Multiple sequence alignment - TraesCS1D01G413600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G413600 chr1D 100.000 5959 0 0 1 5959 474009341 474015299 0.000000e+00 11005.0
1 TraesCS1D01G413600 chr1D 82.652 905 104 23 2576 3478 474026660 474027513 0.000000e+00 752.0
2 TraesCS1D01G413600 chr1D 86.828 372 39 6 2363 2733 474019467 474019829 2.000000e-109 407.0
3 TraesCS1D01G413600 chr1D 80.313 447 58 14 1 419 394748070 394748514 1.610000e-80 311.0
4 TraesCS1D01G413600 chr1D 83.578 341 28 9 4396 4734 474027511 474027825 1.620000e-75 294.0
5 TraesCS1D01G413600 chr1D 78.182 495 67 28 1007 1486 474052890 474053358 1.640000e-70 278.0
6 TraesCS1D01G413600 chr1D 76.771 353 59 18 4613 4961 474056356 474056689 6.140000e-40 176.0
7 TraesCS1D01G413600 chr1D 85.542 166 12 5 2326 2490 474024886 474025040 4.780000e-36 163.0
8 TraesCS1D01G413600 chr1D 80.365 219 30 9 1077 1287 479499603 479499390 2.880000e-33 154.0
9 TraesCS1D01G413600 chr1D 96.774 31 1 0 2211 2241 474024835 474024865 1.100000e-02 52.8
10 TraesCS1D01G413600 chr1A 90.024 2917 170 52 543 3403 568412750 568415601 0.000000e+00 3663.0
11 TraesCS1D01G413600 chr1A 93.323 1917 81 22 3432 5310 568415595 568417502 0.000000e+00 2787.0
12 TraesCS1D01G413600 chr1A 87.991 458 46 4 5295 5747 568417516 568417969 3.160000e-147 532.0
13 TraesCS1D01G413600 chr1A 79.116 498 60 34 1007 1486 568543722 568544193 2.700000e-78 303.0
14 TraesCS1D01G413600 chr1A 78.378 333 49 17 1164 1492 575741503 575741190 1.690000e-45 195.0
15 TraesCS1D01G413600 chr1A 91.837 98 7 1 4580 4677 568527247 568527343 1.040000e-27 135.0
16 TraesCS1D01G413600 chr1A 75.877 228 36 12 1743 1957 508959045 508958824 1.370000e-16 99.0
17 TraesCS1D01G413600 chr1B 88.362 1899 129 46 603 2456 659377456 659379307 0.000000e+00 2198.0
18 TraesCS1D01G413600 chr1B 88.540 1719 132 25 3947 5627 659380995 659382686 0.000000e+00 2023.0
19 TraesCS1D01G413600 chr1B 92.909 1368 79 12 3644 4998 659530920 659532282 0.000000e+00 1973.0
20 TraesCS1D01G413600 chr1B 88.425 1486 117 29 2454 3931 659379465 659380903 0.000000e+00 1740.0
21 TraesCS1D01G413600 chr1B 90.286 1225 69 14 2457 3655 659529698 659530898 0.000000e+00 1557.0
22 TraesCS1D01G413600 chr1B 88.240 1318 94 35 4459 5760 659390429 659391701 0.000000e+00 1519.0
23 TraesCS1D01G413600 chr1B 83.137 1186 131 29 2302 3480 659389259 659390382 0.000000e+00 1018.0
24 TraesCS1D01G413600 chr1B 84.288 1082 127 21 2412 3480 659520626 659521677 0.000000e+00 1016.0
25 TraesCS1D01G413600 chr1B 86.096 748 58 22 5031 5761 659532279 659532997 0.000000e+00 763.0
26 TraesCS1D01G413600 chr1B 87.242 533 51 8 2383 2906 659386254 659386778 5.140000e-165 592.0
27 TraesCS1D01G413600 chr1B 85.536 560 61 15 2357 2906 659537207 659537756 8.670000e-158 568.0
28 TraesCS1D01G413600 chr1B 84.964 552 56 11 2295 2840 659542209 659542739 8.790000e-148 534.0
29 TraesCS1D01G413600 chr1B 87.871 404 39 6 2363 2764 659515892 659516287 3.250000e-127 466.0
30 TraesCS1D01G413600 chr1B 88.251 366 35 7 5270 5628 659536392 659536756 1.190000e-116 431.0
31 TraesCS1D01G413600 chr1B 89.157 332 31 2 2580 2906 659396440 659396771 5.560000e-110 409.0
32 TraesCS1D01G413600 chr1B 85.279 394 45 11 5244 5628 659394210 659394599 1.560000e-105 394.0
33 TraesCS1D01G413600 chr1B 84.987 393 49 9 5244 5628 659385251 659385641 2.010000e-104 390.0
34 TraesCS1D01G413600 chr1B 84.949 392 51 7 5244 5628 659535714 659536104 2.010000e-104 390.0
35 TraesCS1D01G413600 chr1B 85.319 361 43 8 5260 5618 659388538 659388890 1.220000e-96 364.0
36 TraesCS1D01G413600 chr1B 77.846 492 68 28 1006 1486 659554966 659555427 3.540000e-67 267.0
37 TraesCS1D01G413600 chr1B 90.551 127 10 2 2295 2420 659519548 659519673 3.690000e-37 167.0
38 TraesCS1D01G413600 chr1B 88.710 124 14 0 1164 1287 667681971 667681848 1.030000e-32 152.0
39 TraesCS1D01G413600 chr1B 90.385 104 10 0 4401 4504 659521680 659521783 2.900000e-28 137.0
40 TraesCS1D01G413600 chr1B 93.151 73 5 0 2188 2260 659519408 659519480 2.270000e-19 108.0
41 TraesCS1D01G413600 chr1B 95.522 67 3 0 5893 5959 659533091 659533157 2.270000e-19 108.0
42 TraesCS1D01G413600 chr1B 77.528 178 31 8 2188 2358 659529508 659529683 1.370000e-16 99.0
43 TraesCS1D01G413600 chr1B 74.897 243 37 18 1731 1957 659555740 659555974 8.230000e-14 89.8
44 TraesCS1D01G413600 chr1B 91.304 46 3 1 2211 2256 659519519 659519563 1.790000e-05 62.1
45 TraesCS1D01G413600 chr1B 89.130 46 4 1 2211 2256 659389223 659389267 8.340000e-04 56.5
46 TraesCS1D01G413600 chr4D 87.442 430 28 6 1 419 5930826 5930412 6.990000e-129 472.0
47 TraesCS1D01G413600 chr4D 80.324 432 34 11 1 419 92662490 92662097 4.550000e-71 279.0
48 TraesCS1D01G413600 chr4D 85.593 118 17 0 4844 4961 494074562 494074679 2.250000e-24 124.0
49 TraesCS1D01G413600 chr4D 76.639 244 37 14 1724 1958 494099584 494099816 3.770000e-22 117.0
50 TraesCS1D01G413600 chr7B 89.508 305 32 0 1 305 690935698 690936002 2.600000e-103 387.0
51 TraesCS1D01G413600 chr7B 78.521 284 40 12 1316 1597 22541020 22541284 3.690000e-37 167.0
52 TraesCS1D01G413600 chr7B 85.526 152 10 8 279 419 11533404 11533254 1.340000e-31 148.0
53 TraesCS1D01G413600 chr6D 83.898 354 56 1 2 355 298215351 298215703 2.660000e-88 337.0
54 TraesCS1D01G413600 chr2A 81.731 416 56 11 1 400 161711811 161711400 4.450000e-86 329.0
55 TraesCS1D01G413600 chr4B 80.624 449 55 12 1 419 43763767 43764213 9.640000e-83 318.0
56 TraesCS1D01G413600 chr4B 75.799 438 67 25 1 418 76562595 76562177 1.020000e-42 185.0
57 TraesCS1D01G413600 chr4B 88.119 101 12 0 4861 4961 633329589 633329689 2.920000e-23 121.0
58 TraesCS1D01G413600 chr4B 83.051 118 20 0 4844 4961 633149596 633149713 2.270000e-19 108.0
59 TraesCS1D01G413600 chr5A 80.222 450 56 24 1 419 45264058 45263611 2.090000e-79 307.0
60 TraesCS1D01G413600 chr5A 79.345 397 51 11 1731 2106 456476430 456476044 3.570000e-62 250.0
61 TraesCS1D01G413600 chr5A 77.385 283 45 12 1316 1597 456476868 456476604 3.720000e-32 150.0
62 TraesCS1D01G413600 chr5A 85.593 118 17 0 4844 4961 673559516 673559633 2.250000e-24 124.0
63 TraesCS1D01G413600 chr7A 79.688 448 57 16 1 417 571374421 571373977 5.840000e-75 292.0
64 TraesCS1D01G413600 chr7A 83.237 173 26 3 1316 1487 80346119 80346289 8.000000e-34 156.0
65 TraesCS1D01G413600 chr3B 87.448 239 29 1 1051 1289 418473577 418473814 2.120000e-69 274.0
66 TraesCS1D01G413600 chr3B 78.571 448 60 19 1 419 172107761 172107321 4.580000e-66 263.0
67 TraesCS1D01G413600 chr6A 80.201 399 49 12 1726 2103 77505896 77506285 7.610000e-69 272.0
68 TraesCS1D01G413600 chr6A 79.612 412 54 13 1726 2116 22037240 22036838 9.840000e-68 268.0
69 TraesCS1D01G413600 chr6A 84.524 168 19 5 1321 1487 77505472 77505633 6.180000e-35 159.0
70 TraesCS1D01G413600 chr6A 83.815 173 21 5 1316 1487 22037669 22037503 2.220000e-34 158.0
71 TraesCS1D01G413600 chr6A 75.983 229 34 17 1743 1957 26325223 26325002 1.370000e-16 99.0
72 TraesCS1D01G413600 chr3A 79.612 412 54 12 1726 2116 20202861 20203263 9.840000e-68 268.0
73 TraesCS1D01G413600 chr3A 79.422 277 36 12 1323 1597 525197954 525198211 6.140000e-40 176.0
74 TraesCS1D01G413600 chr3A 75.877 228 36 12 1743 1957 411267241 411267020 1.370000e-16 99.0
75 TraesCS1D01G413600 chr4A 84.190 253 37 3 2 253 584050287 584050537 5.970000e-60 243.0
76 TraesCS1D01G413600 chr4A 83.465 254 39 3 1 253 626282423 626282172 3.590000e-57 233.0
77 TraesCS1D01G413600 chr7D 78.571 168 34 2 3034 3200 608516548 608516714 6.310000e-20 110.0
78 TraesCS1D01G413600 chr6B 86.420 81 11 0 1877 1957 423096683 423096763 8.230000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G413600 chr1D 474009341 474015299 5958 False 11005.000000 11005 100.000000 1 5959 1 chr1D.!!$F2 5958
1 TraesCS1D01G413600 chr1D 474024835 474027825 2990 False 315.450000 752 87.136500 2211 4734 4 chr1D.!!$F4 2523
2 TraesCS1D01G413600 chr1D 474052890 474056689 3799 False 227.000000 278 77.476500 1007 4961 2 chr1D.!!$F5 3954
3 TraesCS1D01G413600 chr1A 568412750 568417969 5219 False 2327.333333 3663 90.446000 543 5747 3 chr1A.!!$F3 5204
4 TraesCS1D01G413600 chr1B 659377456 659396771 19315 False 973.045455 2198 87.074364 603 5760 11 chr1B.!!$F2 5157
5 TraesCS1D01G413600 chr1B 659529508 659537756 8248 False 736.125000 1973 87.634625 2188 5959 8 chr1B.!!$F4 3771
6 TraesCS1D01G413600 chr1B 659542209 659542739 530 False 534.000000 534 84.964000 2295 2840 1 chr1B.!!$F1 545
7 TraesCS1D01G413600 chr1B 659515892 659521783 5891 False 326.016667 1016 89.591667 2188 4504 6 chr1B.!!$F3 2316
8 TraesCS1D01G413600 chr6A 77505472 77506285 813 False 215.500000 272 82.362500 1321 2103 2 chr6A.!!$F1 782
9 TraesCS1D01G413600 chr6A 22036838 22037669 831 True 213.000000 268 81.713500 1316 2116 2 chr6A.!!$R2 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.036732 TCTCCAAATCGTGCAAGCCT 59.963 50.000 0.0 0.00 0.00 4.58 F
508 509 0.108138 ATCGTGCAAGCCTCTGGTAC 60.108 55.000 0.0 0.00 0.00 3.34 F
1336 1365 0.327259 TCCATGCTTGCTCTGCTTCT 59.673 50.000 0.0 0.00 0.00 2.85 F
1864 2349 0.464373 TCCTTCATGCTTGCCGATCC 60.464 55.000 0.0 0.00 0.00 3.36 F
2558 6693 0.107831 TTCTGACACCCGGTTTCTGG 59.892 55.000 0.0 2.11 0.00 3.86 F
3009 7158 0.243907 GTTGTGCAGAGAGCCGTAGA 59.756 55.000 0.0 0.00 44.83 2.59 F
4050 8454 1.895798 TCTACTGCTGGGACAACTCTG 59.104 52.381 0.0 0.00 38.70 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1307 1332 0.325933 CAAGCATGGAGGAGGTGACA 59.674 55.000 0.00 0.00 0.00 3.58 R
2283 3702 0.664767 CTAGTGAGAATAGGCGGCGC 60.665 60.000 26.17 26.17 0.00 6.53 R
2397 3838 1.962807 CTCCAAGGAACAAACATGCCA 59.037 47.619 0.00 0.00 0.00 4.92 R
3817 8070 2.670414 GAGACAAGATCGAACCTTGCTG 59.330 50.000 22.82 8.21 43.45 4.41 R
4431 8862 1.139058 ACCTCGGACATTATGAGCCAC 59.861 52.381 0.00 0.00 0.00 5.01 R
4859 9334 1.803922 CGCGCTCACGACCATGTAA 60.804 57.895 5.56 0.00 43.93 2.41 R
5762 19177 0.107410 ATGGAAAATGGCGCGGACTA 60.107 50.000 8.83 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.974293 TTTCCCCCGGAGTTGCCC 61.974 66.667 0.73 0.00 31.21 5.36
26 27 4.988598 CGGAGTTGCCCACGCTGT 62.989 66.667 0.00 0.00 35.36 4.40
27 28 3.050275 GGAGTTGCCCACGCTGTC 61.050 66.667 0.00 0.00 35.36 3.51
31 32 2.672651 TTGCCCACGCTGTCATGG 60.673 61.111 0.00 0.00 35.36 3.66
32 33 3.189376 TTGCCCACGCTGTCATGGA 62.189 57.895 0.00 0.00 38.34 3.41
34 35 2.436646 CCCACGCTGTCATGGACC 60.437 66.667 0.00 0.00 38.34 4.46
37 38 1.293179 CACGCTGTCATGGACCAGA 59.707 57.895 0.00 0.00 0.00 3.86
40 41 0.320683 CGCTGTCATGGACCAGACAA 60.321 55.000 20.32 10.01 43.48 3.18
42 43 1.947678 GCTGTCATGGACCAGACAAGG 60.948 57.143 20.32 14.01 43.48 3.61
43 44 0.692476 TGTCATGGACCAGACAAGGG 59.308 55.000 18.68 0.00 41.42 3.95
45 46 1.906574 GTCATGGACCAGACAAGGGTA 59.093 52.381 15.25 0.00 39.19 3.69
46 47 2.093447 GTCATGGACCAGACAAGGGTAG 60.093 54.545 15.25 0.00 39.19 3.18
47 48 2.187958 CATGGACCAGACAAGGGTAGA 58.812 52.381 0.00 0.00 39.19 2.59
48 49 2.409064 TGGACCAGACAAGGGTAGAA 57.591 50.000 0.00 0.00 39.19 2.10
49 50 2.915869 TGGACCAGACAAGGGTAGAAT 58.084 47.619 0.00 0.00 39.19 2.40
50 51 2.838202 TGGACCAGACAAGGGTAGAATC 59.162 50.000 0.00 0.00 39.19 2.52
51 52 2.170817 GGACCAGACAAGGGTAGAATCC 59.829 54.545 0.00 0.00 39.19 3.01
58 59 4.265206 GGGTAGAATCCCGACGGA 57.735 61.111 17.49 1.45 44.33 4.69
70 71 4.899239 GACGGATCCGCCCAGCTG 62.899 72.222 33.62 6.78 44.19 4.24
80 81 4.988598 CCCAGCTGCCGACGTGTT 62.989 66.667 8.66 0.00 0.00 3.32
81 82 3.716006 CCAGCTGCCGACGTGTTG 61.716 66.667 8.66 0.00 0.00 3.33
83 84 4.908687 AGCTGCCGACGTGTTGCA 62.909 61.111 0.00 0.00 0.00 4.08
84 85 3.726517 GCTGCCGACGTGTTGCAT 61.727 61.111 0.00 0.00 33.97 3.96
85 86 2.476051 CTGCCGACGTGTTGCATC 59.524 61.111 0.00 0.00 33.97 3.91
86 87 3.027170 CTGCCGACGTGTTGCATCC 62.027 63.158 0.00 0.00 33.97 3.51
87 88 4.147322 GCCGACGTGTTGCATCCG 62.147 66.667 0.00 0.00 0.00 4.18
88 89 4.147322 CCGACGTGTTGCATCCGC 62.147 66.667 0.00 0.00 39.24 5.54
91 92 3.308878 GACGTGTTGCATCCGCCAC 62.309 63.158 0.00 0.00 37.32 5.01
92 93 4.101790 CGTGTTGCATCCGCCACC 62.102 66.667 0.00 0.00 37.32 4.61
93 94 4.101790 GTGTTGCATCCGCCACCG 62.102 66.667 0.00 0.00 37.32 4.94
106 107 2.202518 CACCGCGTCGACCGTAAT 60.203 61.111 20.03 7.24 39.32 1.89
107 108 2.100991 ACCGCGTCGACCGTAATC 59.899 61.111 20.03 0.69 39.32 1.75
108 109 2.653130 CCGCGTCGACCGTAATCC 60.653 66.667 20.03 0.71 39.32 3.01
109 110 2.100797 CGCGTCGACCGTAATCCA 59.899 61.111 10.58 0.00 39.32 3.41
110 111 2.219562 CGCGTCGACCGTAATCCAC 61.220 63.158 10.58 0.00 39.32 4.02
111 112 1.138247 GCGTCGACCGTAATCCACT 59.862 57.895 10.58 0.00 39.32 4.00
112 113 1.138047 GCGTCGACCGTAATCCACTG 61.138 60.000 10.58 0.00 39.32 3.66
113 114 0.448990 CGTCGACCGTAATCCACTGA 59.551 55.000 10.58 0.00 0.00 3.41
114 115 1.792993 CGTCGACCGTAATCCACTGAC 60.793 57.143 10.58 0.00 0.00 3.51
115 116 0.813184 TCGACCGTAATCCACTGACC 59.187 55.000 0.00 0.00 0.00 4.02
116 117 0.528924 CGACCGTAATCCACTGACCA 59.471 55.000 0.00 0.00 0.00 4.02
117 118 1.067425 CGACCGTAATCCACTGACCAA 60.067 52.381 0.00 0.00 0.00 3.67
118 119 2.618053 GACCGTAATCCACTGACCAAG 58.382 52.381 0.00 0.00 0.00 3.61
121 122 1.751437 GTAATCCACTGACCAAGGCC 58.249 55.000 0.00 0.00 0.00 5.19
122 123 0.623723 TAATCCACTGACCAAGGCCC 59.376 55.000 0.00 0.00 0.00 5.80
123 124 1.434513 AATCCACTGACCAAGGCCCA 61.435 55.000 0.00 0.00 0.00 5.36
125 126 2.669569 CACTGACCAAGGCCCACG 60.670 66.667 0.00 0.00 0.00 4.94
126 127 4.643387 ACTGACCAAGGCCCACGC 62.643 66.667 0.00 0.00 0.00 5.34
139 140 2.423446 CACGCCTGGGCCTAGATC 59.577 66.667 19.36 7.96 37.98 2.75
141 142 3.996124 CGCCTGGGCCTAGATCCG 61.996 72.222 19.36 13.03 37.98 4.18
142 143 3.631046 GCCTGGGCCTAGATCCGG 61.631 72.222 19.36 1.70 34.56 5.14
143 144 3.631046 CCTGGGCCTAGATCCGGC 61.631 72.222 19.36 13.79 46.83 6.13
198 199 3.770040 TCCCTGGTGACCGCGATG 61.770 66.667 8.23 0.00 0.00 3.84
200 201 4.758251 CCTGGTGACCGCGATGCA 62.758 66.667 8.23 0.00 0.00 3.96
201 202 3.490759 CTGGTGACCGCGATGCAC 61.491 66.667 8.23 12.55 0.00 4.57
204 205 3.490759 GTGACCGCGATGCACCAG 61.491 66.667 8.23 0.00 0.00 4.00
206 207 3.188786 GACCGCGATGCACCAGAC 61.189 66.667 8.23 0.00 0.00 3.51
211 212 4.794439 CGATGCACCAGACGGCGA 62.794 66.667 16.62 0.00 34.57 5.54
212 213 2.434185 GATGCACCAGACGGCGAA 60.434 61.111 16.62 0.00 34.57 4.70
213 214 2.434884 ATGCACCAGACGGCGAAG 60.435 61.111 16.62 1.97 34.57 3.79
240 241 2.695646 GCAGACGAACGGAATCGC 59.304 61.111 7.33 1.96 46.51 4.58
241 242 2.799540 GCAGACGAACGGAATCGCC 61.800 63.158 7.33 0.00 46.51 5.54
315 316 4.323477 CCCCACACGAGCGGGAAA 62.323 66.667 7.60 0.00 46.34 3.13
317 318 2.613506 CCCACACGAGCGGGAAAAC 61.614 63.158 0.00 0.00 46.34 2.43
318 319 2.613506 CCACACGAGCGGGAAAACC 61.614 63.158 0.00 0.00 0.00 3.27
319 320 2.281276 ACACGAGCGGGAAAACCC 60.281 61.111 0.00 0.00 34.99 4.11
328 329 2.353958 GGAAAACCCCGAGTCCCC 59.646 66.667 0.00 0.00 0.00 4.81
330 331 4.340246 AAAACCCCGAGTCCCCGC 62.340 66.667 0.00 0.00 0.00 6.13
389 390 3.039526 AGGGAGGAGGGGGAGGAG 61.040 72.222 0.00 0.00 0.00 3.69
390 391 3.036959 GGGAGGAGGGGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
391 392 2.612251 GGAGGAGGGGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
392 393 2.612251 GAGGAGGGGGAGGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
393 394 3.039526 AGGAGGGGGAGGAGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
394 395 4.179599 GGAGGGGGAGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
395 396 4.179599 GAGGGGGAGGAGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
396 397 4.761304 AGGGGGAGGAGAGGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
398 399 3.369388 GGGGAGGAGAGGGGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
399 400 2.284151 GGGAGGAGAGGGGGAGTC 59.716 72.222 0.00 0.00 0.00 3.36
400 401 2.284151 GGAGGAGAGGGGGAGTCC 59.716 72.222 0.00 0.00 0.00 3.85
401 402 2.123640 GAGGAGAGGGGGAGTCCG 60.124 72.222 2.26 0.00 35.33 4.79
402 403 3.742248 GAGGAGAGGGGGAGTCCGG 62.742 73.684 2.26 0.00 35.33 5.14
412 413 3.210528 GAGTCCGGCCGACGAGAT 61.211 66.667 30.73 7.78 46.92 2.75
414 415 3.700831 AGTCCGGCCGACGAGATCT 62.701 63.158 30.73 11.91 46.92 2.75
418 419 3.917760 GGCCGACGAGATCTGGGG 61.918 72.222 9.72 2.89 0.00 4.96
419 420 2.833582 GCCGACGAGATCTGGGGA 60.834 66.667 9.72 0.00 0.00 4.81
421 422 1.956629 GCCGACGAGATCTGGGGAAA 61.957 60.000 9.72 0.00 0.00 3.13
423 424 1.471676 CCGACGAGATCTGGGGAAAAG 60.472 57.143 9.72 0.00 0.00 2.27
424 425 1.471676 CGACGAGATCTGGGGAAAAGG 60.472 57.143 9.72 0.00 0.00 3.11
425 426 1.831736 GACGAGATCTGGGGAAAAGGA 59.168 52.381 9.72 0.00 0.00 3.36
426 427 2.436173 GACGAGATCTGGGGAAAAGGAT 59.564 50.000 9.72 0.00 0.00 3.24
427 428 2.171448 ACGAGATCTGGGGAAAAGGATG 59.829 50.000 9.72 0.00 0.00 3.51
429 430 3.072184 CGAGATCTGGGGAAAAGGATGAT 59.928 47.826 0.00 0.00 0.00 2.45
430 431 4.396522 GAGATCTGGGGAAAAGGATGATG 58.603 47.826 0.00 0.00 0.00 3.07
432 433 4.668812 AGATCTGGGGAAAAGGATGATGAT 59.331 41.667 0.00 0.00 0.00 2.45
434 435 3.117398 TCTGGGGAAAAGGATGATGATGG 60.117 47.826 0.00 0.00 0.00 3.51
435 436 2.858133 TGGGGAAAAGGATGATGATGGA 59.142 45.455 0.00 0.00 0.00 3.41
436 437 3.271755 TGGGGAAAAGGATGATGATGGAA 59.728 43.478 0.00 0.00 0.00 3.53
437 438 3.893813 GGGGAAAAGGATGATGATGGAAG 59.106 47.826 0.00 0.00 0.00 3.46
439 440 3.004106 GGAAAAGGATGATGATGGAAGCG 59.996 47.826 0.00 0.00 0.00 4.68
440 441 2.267174 AAGGATGATGATGGAAGCGG 57.733 50.000 0.00 0.00 0.00 5.52
441 442 1.135094 AGGATGATGATGGAAGCGGT 58.865 50.000 0.00 0.00 0.00 5.68
443 444 2.301296 AGGATGATGATGGAAGCGGTAG 59.699 50.000 0.00 0.00 0.00 3.18
444 445 2.300152 GGATGATGATGGAAGCGGTAGA 59.700 50.000 0.00 0.00 0.00 2.59
445 446 3.055530 GGATGATGATGGAAGCGGTAGAT 60.056 47.826 0.00 0.00 0.00 1.98
446 447 3.391506 TGATGATGGAAGCGGTAGATG 57.608 47.619 0.00 0.00 0.00 2.90
447 448 2.037641 TGATGATGGAAGCGGTAGATGG 59.962 50.000 0.00 0.00 0.00 3.51
448 449 1.496060 TGATGGAAGCGGTAGATGGT 58.504 50.000 0.00 0.00 0.00 3.55
449 450 1.138859 TGATGGAAGCGGTAGATGGTG 59.861 52.381 0.00 0.00 0.00 4.17
451 452 0.824109 TGGAAGCGGTAGATGGTGAG 59.176 55.000 0.00 0.00 0.00 3.51
452 453 0.105039 GGAAGCGGTAGATGGTGAGG 59.895 60.000 0.00 0.00 0.00 3.86
453 454 0.530870 GAAGCGGTAGATGGTGAGGC 60.531 60.000 0.00 0.00 0.00 4.70
454 455 1.972660 AAGCGGTAGATGGTGAGGCC 61.973 60.000 0.00 0.00 37.90 5.19
455 456 2.435693 GCGGTAGATGGTGAGGCCT 61.436 63.158 3.86 3.86 38.35 5.19
456 457 1.972660 GCGGTAGATGGTGAGGCCTT 61.973 60.000 6.77 0.00 38.35 4.35
457 458 0.179073 CGGTAGATGGTGAGGCCTTG 60.179 60.000 6.77 0.00 38.35 3.61
458 459 0.464554 GGTAGATGGTGAGGCCTTGC 60.465 60.000 6.77 2.23 38.35 4.01
478 479 2.253513 CGAAGGTGGCACCGAAAAT 58.746 52.632 29.76 15.27 44.90 1.82
479 480 0.168128 CGAAGGTGGCACCGAAAATC 59.832 55.000 29.76 20.98 44.90 2.17
480 481 1.243902 GAAGGTGGCACCGAAAATCA 58.756 50.000 29.76 0.00 44.90 2.57
481 482 1.818674 GAAGGTGGCACCGAAAATCAT 59.181 47.619 29.76 8.04 44.90 2.45
482 483 1.923356 AGGTGGCACCGAAAATCATT 58.077 45.000 29.76 7.26 44.90 2.57
484 485 1.818674 GGTGGCACCGAAAATCATTCT 59.181 47.619 22.83 0.00 0.00 2.40
485 486 2.159379 GGTGGCACCGAAAATCATTCTC 60.159 50.000 22.83 0.00 0.00 2.87
486 487 2.091541 TGGCACCGAAAATCATTCTCC 58.908 47.619 0.00 0.00 0.00 3.71
487 488 2.091541 GGCACCGAAAATCATTCTCCA 58.908 47.619 0.00 0.00 0.00 3.86
488 489 2.491693 GGCACCGAAAATCATTCTCCAA 59.508 45.455 0.00 0.00 0.00 3.53
489 490 3.056891 GGCACCGAAAATCATTCTCCAAA 60.057 43.478 0.00 0.00 0.00 3.28
490 491 4.381932 GGCACCGAAAATCATTCTCCAAAT 60.382 41.667 0.00 0.00 0.00 2.32
491 492 4.800471 GCACCGAAAATCATTCTCCAAATC 59.200 41.667 0.00 0.00 0.00 2.17
493 494 4.700213 ACCGAAAATCATTCTCCAAATCGT 59.300 37.500 0.00 0.00 0.00 3.73
494 495 5.030295 CCGAAAATCATTCTCCAAATCGTG 58.970 41.667 0.00 0.00 0.00 4.35
495 496 4.496895 CGAAAATCATTCTCCAAATCGTGC 59.503 41.667 0.00 0.00 0.00 5.34
496 497 5.389859 AAAATCATTCTCCAAATCGTGCA 57.610 34.783 0.00 0.00 0.00 4.57
498 499 4.627611 ATCATTCTCCAAATCGTGCAAG 57.372 40.909 0.00 0.00 0.00 4.01
499 500 2.162208 TCATTCTCCAAATCGTGCAAGC 59.838 45.455 0.00 0.00 0.00 4.01
500 501 0.881118 TTCTCCAAATCGTGCAAGCC 59.119 50.000 0.00 0.00 0.00 4.35
501 502 0.036732 TCTCCAAATCGTGCAAGCCT 59.963 50.000 0.00 0.00 0.00 4.58
503 504 0.036732 TCCAAATCGTGCAAGCCTCT 59.963 50.000 0.00 0.00 0.00 3.69
504 505 0.169672 CCAAATCGTGCAAGCCTCTG 59.830 55.000 0.00 0.00 0.00 3.35
505 506 0.169672 CAAATCGTGCAAGCCTCTGG 59.830 55.000 0.00 0.00 0.00 3.86
506 507 0.250901 AAATCGTGCAAGCCTCTGGT 60.251 50.000 0.00 0.00 0.00 4.00
508 509 0.108138 ATCGTGCAAGCCTCTGGTAC 60.108 55.000 0.00 0.00 0.00 3.34
510 511 1.374947 GTGCAAGCCTCTGGTACCA 59.625 57.895 15.39 15.39 0.00 3.25
512 513 0.698238 TGCAAGCCTCTGGTACCATT 59.302 50.000 16.75 3.08 0.00 3.16
513 514 1.075374 TGCAAGCCTCTGGTACCATTT 59.925 47.619 16.75 2.67 0.00 2.32
514 515 1.474077 GCAAGCCTCTGGTACCATTTG 59.526 52.381 16.75 15.00 0.00 2.32
517 518 3.806949 AGCCTCTGGTACCATTTGAAA 57.193 42.857 16.75 0.00 0.00 2.69
519 520 4.677182 AGCCTCTGGTACCATTTGAAAAT 58.323 39.130 16.75 0.00 0.00 1.82
520 521 4.463891 AGCCTCTGGTACCATTTGAAAATG 59.536 41.667 16.75 8.51 44.12 2.32
533 534 5.565592 TTTGAAAATGGATGAGACGATGG 57.434 39.130 0.00 0.00 0.00 3.51
534 535 4.220693 TGAAAATGGATGAGACGATGGT 57.779 40.909 0.00 0.00 0.00 3.55
535 536 4.588899 TGAAAATGGATGAGACGATGGTT 58.411 39.130 0.00 0.00 0.00 3.67
536 537 5.009631 TGAAAATGGATGAGACGATGGTTT 58.990 37.500 0.00 0.00 0.00 3.27
537 538 6.176896 TGAAAATGGATGAGACGATGGTTTA 58.823 36.000 0.00 0.00 0.00 2.01
539 540 3.179443 TGGATGAGACGATGGTTTAGC 57.821 47.619 0.00 0.00 0.00 3.09
540 541 2.766263 TGGATGAGACGATGGTTTAGCT 59.234 45.455 0.00 0.00 0.00 3.32
541 542 3.197766 TGGATGAGACGATGGTTTAGCTT 59.802 43.478 0.00 0.00 0.00 3.74
545 546 4.894784 TGAGACGATGGTTTAGCTTTTCT 58.105 39.130 0.00 0.00 0.00 2.52
556 557 7.839907 TGGTTTAGCTTTTCTATGCATCAAAT 58.160 30.769 0.19 0.00 0.00 2.32
559 560 9.017669 GTTTAGCTTTTCTATGCATCAAATCAG 57.982 33.333 0.19 0.79 0.00 2.90
562 563 7.649973 AGCTTTTCTATGCATCAAATCAGATC 58.350 34.615 0.19 0.00 0.00 2.75
563 564 7.502895 AGCTTTTCTATGCATCAAATCAGATCT 59.497 33.333 0.19 0.00 0.00 2.75
576 578 9.827198 ATCAAATCAGATCTAGACTCCTCTATT 57.173 33.333 0.00 0.00 0.00 1.73
577 579 9.295825 TCAAATCAGATCTAGACTCCTCTATTC 57.704 37.037 0.00 0.00 0.00 1.75
581 583 7.380536 TCAGATCTAGACTCCTCTATTCGTAC 58.619 42.308 0.00 0.00 0.00 3.67
607 609 4.436998 GCTAGGGTCGCGTGCACT 62.437 66.667 16.19 9.80 0.00 4.40
698 710 7.970061 GCATAAGATTTACAAGTTGATGCTCAA 59.030 33.333 10.54 0.00 35.44 3.02
735 747 0.880278 TGGAGAAGCAAGCGTGTGAC 60.880 55.000 0.59 0.00 0.00 3.67
749 761 2.143008 TGTGACGTGGACACATACAC 57.857 50.000 4.58 9.25 42.20 2.90
776 788 1.870458 CGTCGACGCGCCTATGAAA 60.870 57.895 26.59 0.00 0.00 2.69
991 1013 1.696832 CTCGCGCCTAGCTTGGTTTC 61.697 60.000 15.85 4.54 45.59 2.78
1044 1069 3.785859 GGCAGCGACCATGAGGGA 61.786 66.667 0.00 0.00 41.15 4.20
1260 1285 2.280389 CAGGACGCCATGATCCGG 60.280 66.667 0.00 0.00 40.20 5.14
1293 1318 1.768077 CATCTCCCAGGTCCCCCTC 60.768 68.421 0.00 0.00 39.89 4.30
1295 1320 1.837533 ATCTCCCAGGTCCCCCTCAA 61.838 60.000 0.00 0.00 39.89 3.02
1297 1322 3.339093 CCCAGGTCCCCCTCAACC 61.339 72.222 0.00 0.00 39.89 3.77
1298 1323 2.531685 CCAGGTCCCCCTCAACCA 60.532 66.667 0.00 0.00 39.89 3.67
1299 1324 2.160171 CCAGGTCCCCCTCAACCAA 61.160 63.158 0.00 0.00 39.89 3.67
1302 1327 2.539081 GGTCCCCCTCAACCAAGCT 61.539 63.158 0.00 0.00 35.53 3.74
1307 1332 2.437897 CCTCAACCAAGCTGCCCT 59.562 61.111 0.00 0.00 0.00 5.19
1308 1333 1.975407 CCTCAACCAAGCTGCCCTG 60.975 63.158 0.00 0.00 0.00 4.45
1336 1365 0.327259 TCCATGCTTGCTCTGCTTCT 59.673 50.000 0.00 0.00 0.00 2.85
1338 1367 1.941294 CCATGCTTGCTCTGCTTCTAG 59.059 52.381 0.00 0.00 0.00 2.43
1342 1371 2.200899 GCTTGCTCTGCTTCTAGCTAC 58.799 52.381 0.00 0.00 42.97 3.58
1343 1372 2.159114 GCTTGCTCTGCTTCTAGCTACT 60.159 50.000 0.00 0.00 42.97 2.57
1344 1373 3.678529 GCTTGCTCTGCTTCTAGCTACTT 60.679 47.826 0.00 0.00 42.97 2.24
1345 1374 3.791973 TGCTCTGCTTCTAGCTACTTC 57.208 47.619 0.00 0.00 42.97 3.01
1347 1376 2.693074 GCTCTGCTTCTAGCTACTTCCT 59.307 50.000 0.00 0.00 42.97 3.36
1349 1378 4.681744 CTCTGCTTCTAGCTACTTCCTTG 58.318 47.826 0.00 0.00 42.97 3.61
1350 1379 3.118956 TCTGCTTCTAGCTACTTCCTTGC 60.119 47.826 0.00 0.00 42.97 4.01
1407 1445 3.676605 TTCTCGGCGTTCGGCTCA 61.677 61.111 15.85 2.77 42.94 4.26
1499 1537 3.307199 GGGGTGAGAAGTTTCGACCATTA 60.307 47.826 14.25 0.00 36.73 1.90
1560 1598 6.935208 GGAGTTGACCTTGTACAATTAGTCTT 59.065 38.462 23.23 14.49 0.00 3.01
1697 2147 3.496130 AGACTGAACTGAAGTTGCATTCG 59.504 43.478 0.00 0.00 38.56 3.34
1716 2176 6.620733 GCATTCGTTTACTCTAATGTGCTTGT 60.621 38.462 0.00 0.00 32.99 3.16
1718 2178 6.223138 TCGTTTACTCTAATGTGCTTGTTG 57.777 37.500 0.00 0.00 0.00 3.33
1753 2213 0.673333 AGTCGTTGATGATTGCGGCA 60.673 50.000 0.00 0.00 0.00 5.69
1795 2255 3.400007 GCCATCTCCTTCGCGAAC 58.600 61.111 19.38 1.25 0.00 3.95
1814 2279 0.861185 CGTATGACATGATGCACCCG 59.139 55.000 0.00 0.00 0.00 5.28
1829 2294 1.678635 CCCGCATCTTTCCCAAGCA 60.679 57.895 0.00 0.00 0.00 3.91
1859 2344 2.680577 CACTTTTCCTTCATGCTTGCC 58.319 47.619 0.00 0.00 0.00 4.52
1860 2345 1.270550 ACTTTTCCTTCATGCTTGCCG 59.729 47.619 0.00 0.00 0.00 5.69
1864 2349 0.464373 TCCTTCATGCTTGCCGATCC 60.464 55.000 0.00 0.00 0.00 3.36
1868 2353 2.108514 CATGCTTGCCGATCCGTGT 61.109 57.895 0.00 0.00 0.00 4.49
1965 2451 8.559536 CCTACACGGTTCGTATAAAGTATCTTA 58.440 37.037 0.00 0.00 38.32 2.10
2000 2486 9.638239 TTTATTTTGTTCCTAGAATGTTCATGC 57.362 29.630 0.00 0.00 0.00 4.06
2001 2487 5.643379 TTTGTTCCTAGAATGTTCATGCC 57.357 39.130 0.00 0.00 0.00 4.40
2044 2530 5.929415 AGAGTTTTTAGTACTTCTCAGCTGC 59.071 40.000 9.47 0.00 0.00 5.25
2157 2644 6.376299 TGTCGACACAGTATTGGACTAGTTAT 59.624 38.462 15.76 0.00 35.64 1.89
2158 2645 7.094075 TGTCGACACAGTATTGGACTAGTTATT 60.094 37.037 15.76 0.00 35.64 1.40
2160 2647 8.959548 TCGACACAGTATTGGACTAGTTATTAA 58.040 33.333 0.00 0.00 35.64 1.40
2205 3535 8.109705 TGTTATGTATGAATTATGTGATGCCC 57.890 34.615 0.00 0.00 0.00 5.36
2283 3702 2.358737 GGCTCCGTGAACCAGGTG 60.359 66.667 0.00 0.00 0.00 4.00
2359 3799 5.163622 ACCATGCAGTTGTTCATTATGTAGC 60.164 40.000 0.00 0.00 0.00 3.58
2397 3838 3.659183 ATCTTCTTGGCCTATGTGCTT 57.341 42.857 3.32 0.00 0.00 3.91
2437 4839 1.363744 GCTGCTTGCAGTACTAGGTG 58.636 55.000 21.55 0.00 42.31 4.00
2520 6653 9.899226 AGTTAATTTCTGATACTCTGTTTTTGC 57.101 29.630 0.00 0.00 0.00 3.68
2522 6655 9.677567 TTAATTTCTGATACTCTGTTTTTGCAC 57.322 29.630 0.00 0.00 0.00 4.57
2523 6656 6.691754 TTTCTGATACTCTGTTTTTGCACA 57.308 33.333 0.00 0.00 0.00 4.57
2524 6657 5.929697 TCTGATACTCTGTTTTTGCACAG 57.070 39.130 0.00 0.00 44.96 3.66
2532 6665 5.384063 TCTGTTTTTGCACAGAGTTTTCA 57.616 34.783 0.84 0.00 46.76 2.69
2552 6686 4.658063 TCAATTAATTTCTGACACCCGGT 58.342 39.130 0.00 0.00 0.00 5.28
2558 6693 0.107831 TTCTGACACCCGGTTTCTGG 59.892 55.000 0.00 2.11 0.00 3.86
2566 6701 1.202952 ACCCGGTTTCTGGTGCAAATA 60.203 47.619 0.00 0.00 32.36 1.40
2571 6706 3.731867 CGGTTTCTGGTGCAAATATCTGC 60.732 47.826 0.00 0.00 42.95 4.26
2815 6962 1.344438 AGACTGACATCACAGCGGAAA 59.656 47.619 0.00 0.00 41.06 3.13
2841 6988 6.602803 TGAATGATATAAAGGCAAGCACTTGA 59.397 34.615 14.44 0.00 42.93 3.02
2959 7108 7.448777 TGTGTCACTCTTCTAGAAGTAACATCT 59.551 37.037 27.59 5.29 39.38 2.90
3009 7158 0.243907 GTTGTGCAGAGAGCCGTAGA 59.756 55.000 0.00 0.00 44.83 2.59
3091 7240 7.491696 CGAACTCCCTTACTAGTAATTTCCTTG 59.508 40.741 15.57 2.71 0.00 3.61
3134 7285 7.450014 TGGTCCATCACATACAAAAATTACTGT 59.550 33.333 0.00 0.00 0.00 3.55
3274 7430 4.813027 CAGGTGAGTTATGCAGCATTTTT 58.187 39.130 14.58 0.00 36.28 1.94
3275 7431 4.624024 CAGGTGAGTTATGCAGCATTTTTG 59.376 41.667 14.58 0.00 36.28 2.44
3317 7491 2.695359 TGTAGGCATGACTTTTCGGAC 58.305 47.619 6.27 0.00 0.00 4.79
3331 7505 4.806640 TTTCGGACGGAATTAGGTTACT 57.193 40.909 0.00 0.00 33.85 2.24
3395 7570 4.759693 TGTTTGCTACATAACCAACCTGAG 59.240 41.667 0.00 0.00 0.00 3.35
3400 7575 4.081642 GCTACATAACCAACCTGAGAGTGA 60.082 45.833 0.00 0.00 0.00 3.41
3401 7576 4.273148 ACATAACCAACCTGAGAGTGAC 57.727 45.455 0.00 0.00 0.00 3.67
3402 7577 3.646162 ACATAACCAACCTGAGAGTGACA 59.354 43.478 0.00 0.00 0.00 3.58
3403 7578 4.102524 ACATAACCAACCTGAGAGTGACAA 59.897 41.667 0.00 0.00 0.00 3.18
3404 7579 2.918712 ACCAACCTGAGAGTGACAAG 57.081 50.000 0.00 0.00 0.00 3.16
3405 7580 2.119495 ACCAACCTGAGAGTGACAAGT 58.881 47.619 0.00 0.00 0.00 3.16
3406 7581 2.505819 ACCAACCTGAGAGTGACAAGTT 59.494 45.455 0.00 0.00 0.00 2.66
3407 7582 3.709653 ACCAACCTGAGAGTGACAAGTTA 59.290 43.478 0.00 0.00 0.00 2.24
3408 7583 4.058817 CCAACCTGAGAGTGACAAGTTAC 58.941 47.826 0.00 0.00 0.00 2.50
3409 7584 4.442893 CCAACCTGAGAGTGACAAGTTACA 60.443 45.833 0.00 0.00 0.00 2.41
3410 7585 4.323553 ACCTGAGAGTGACAAGTTACAC 57.676 45.455 0.00 0.00 37.30 2.90
3412 7587 4.406003 ACCTGAGAGTGACAAGTTACACTT 59.594 41.667 13.57 6.57 45.54 3.16
3413 7588 5.104900 ACCTGAGAGTGACAAGTTACACTTT 60.105 40.000 13.57 9.59 45.54 2.66
3414 7589 5.235186 CCTGAGAGTGACAAGTTACACTTTG 59.765 44.000 13.57 6.92 45.54 2.77
3415 7590 5.116180 TGAGAGTGACAAGTTACACTTTGG 58.884 41.667 13.57 0.00 45.54 3.28
3416 7591 3.877508 AGAGTGACAAGTTACACTTTGGC 59.122 43.478 13.57 4.47 45.54 4.52
3417 7592 3.616219 AGTGACAAGTTACACTTTGGCA 58.384 40.909 8.48 0.00 43.52 4.92
3418 7593 4.013728 AGTGACAAGTTACACTTTGGCAA 58.986 39.130 0.00 0.00 43.52 4.52
3419 7594 4.461081 AGTGACAAGTTACACTTTGGCAAA 59.539 37.500 12.79 12.79 43.52 3.68
3420 7595 5.047660 AGTGACAAGTTACACTTTGGCAAAA 60.048 36.000 14.43 0.00 43.52 2.44
3421 7596 5.635700 GTGACAAGTTACACTTTGGCAAAAA 59.364 36.000 14.43 2.36 36.03 1.94
3422 7597 6.312672 GTGACAAGTTACACTTTGGCAAAAAT 59.687 34.615 14.43 2.28 36.03 1.82
3423 7598 6.876257 TGACAAGTTACACTTTGGCAAAAATT 59.124 30.769 14.43 1.34 36.03 1.82
3424 7599 7.389053 TGACAAGTTACACTTTGGCAAAAATTT 59.611 29.630 14.43 5.69 36.03 1.82
3425 7600 7.747888 ACAAGTTACACTTTGGCAAAAATTTC 58.252 30.769 14.43 3.80 36.03 2.17
3426 7601 7.606073 ACAAGTTACACTTTGGCAAAAATTTCT 59.394 29.630 14.43 5.89 36.03 2.52
3427 7602 8.450180 CAAGTTACACTTTGGCAAAAATTTCTT 58.550 29.630 14.43 10.95 36.03 2.52
3428 7603 8.560355 AGTTACACTTTGGCAAAAATTTCTTT 57.440 26.923 14.43 0.00 0.00 2.52
3429 7604 8.664798 AGTTACACTTTGGCAAAAATTTCTTTC 58.335 29.630 14.43 0.37 0.00 2.62
3430 7605 8.447053 GTTACACTTTGGCAAAAATTTCTTTCA 58.553 29.630 14.43 0.00 0.00 2.69
3431 7606 7.446001 ACACTTTGGCAAAAATTTCTTTCAA 57.554 28.000 14.43 0.00 0.00 2.69
3432 7607 7.529158 ACACTTTGGCAAAAATTTCTTTCAAG 58.471 30.769 14.43 0.00 0.00 3.02
3433 7608 7.174772 ACACTTTGGCAAAAATTTCTTTCAAGT 59.825 29.630 14.43 0.33 0.00 3.16
3434 7609 7.693536 CACTTTGGCAAAAATTTCTTTCAAGTC 59.306 33.333 14.43 0.00 0.00 3.01
3544 7764 8.947055 ATAAATAACTTCATGGCATGGTTTTC 57.053 30.769 26.15 0.00 0.00 2.29
3817 8070 9.705290 TTTTGAGGCCATTTAAGTTATCTTTTC 57.295 29.630 5.01 0.00 35.36 2.29
3851 8179 3.853712 GTCTCGCTGACAGCACTG 58.146 61.111 26.32 15.08 42.58 3.66
3910 8238 3.243771 GCTACTAGATAAAGCTGGCCGAA 60.244 47.826 0.00 0.00 33.40 4.30
4050 8454 1.895798 TCTACTGCTGGGACAACTCTG 59.104 52.381 0.00 0.00 38.70 3.35
4101 8505 7.743116 TTTCCTCAAGGTATATTCAGGTGTA 57.257 36.000 0.00 0.00 36.34 2.90
4191 8609 2.039084 GGTCTCTTCCTCTTCTGCCAAA 59.961 50.000 0.00 0.00 0.00 3.28
4213 8631 7.284034 CCAAAGCCACTCTGAACTTATCATATT 59.716 37.037 0.00 0.00 37.44 1.28
4318 8738 4.566004 TCTTGTGGTATGTCTGCAGTTAC 58.434 43.478 14.67 13.41 0.00 2.50
4319 8739 4.283467 TCTTGTGGTATGTCTGCAGTTACT 59.717 41.667 14.67 0.00 0.00 2.24
4577 9041 7.062749 ACCGATGCATTAGGAAAGTATTCTA 57.937 36.000 23.59 0.00 35.79 2.10
4770 9235 2.297129 GCTCTCCCCTCTTGCCTGT 61.297 63.158 0.00 0.00 0.00 4.00
4813 9283 8.519492 ACCATGAAACTTGATGAAATTTTACG 57.481 30.769 0.00 0.00 0.00 3.18
4859 9334 2.048127 GCAGGGACTTTCGCGTCT 60.048 61.111 5.77 0.00 34.60 4.18
5026 18381 7.117956 GTGTAGCTCTTCAAGTTAGGGTAAAAG 59.882 40.741 0.00 0.00 0.00 2.27
5027 18382 5.004448 AGCTCTTCAAGTTAGGGTAAAAGC 58.996 41.667 0.00 0.00 0.00 3.51
5202 18576 4.344865 GGGAACGAGCAGCCCCAA 62.345 66.667 0.00 0.00 38.69 4.12
5213 18587 4.680237 GCCCCAAAAAGGCCGTGC 62.680 66.667 0.00 0.00 45.16 5.34
5264 18643 0.250901 GCTTTGAGGCCCAGTCTTCA 60.251 55.000 0.00 0.00 0.00 3.02
5280 18660 3.251004 GTCTTCATTCTTGGTTTCTGCGT 59.749 43.478 0.00 0.00 0.00 5.24
5306 18686 7.040340 TCCAAACGGTAATCAAGCTAATCAAAA 60.040 33.333 0.00 0.00 0.00 2.44
5336 18744 3.036091 CTCCCGGTTAGATTAGTCCCAA 58.964 50.000 0.00 0.00 0.00 4.12
5341 18749 3.368739 CGGTTAGATTAGTCCCAAACCGT 60.369 47.826 20.03 0.00 43.45 4.83
5385 18793 4.232188 TCAGACGTGTATAAGAGGAGGT 57.768 45.455 0.00 0.00 0.00 3.85
5394 18802 0.905357 TAAGAGGAGGTGCAAGGCTC 59.095 55.000 0.00 0.00 0.00 4.70
5397 18805 4.785453 GGAGGTGCAAGGCTCCGG 62.785 72.222 0.00 0.00 45.53 5.14
5546 18954 1.945394 CATCATAGTGGCTTGCCACTC 59.055 52.381 39.89 19.79 46.65 3.51
5547 18955 0.983467 TCATAGTGGCTTGCCACTCA 59.017 50.000 39.89 28.16 46.65 3.41
5552 18960 2.743928 GGCTTGCCACTCAGGTCG 60.744 66.667 6.79 0.00 40.61 4.79
5588 18996 4.715523 TTGCACTGTAGCCCGGGC 62.716 66.667 39.29 39.29 42.33 6.13
5608 19016 3.989787 GGCGCACCCCAACCAAAG 61.990 66.667 10.83 0.00 0.00 2.77
5609 19017 2.909965 GCGCACCCCAACCAAAGA 60.910 61.111 0.30 0.00 0.00 2.52
5646 19054 8.939201 TTTAACTCAACTTGCAATTGATTTGA 57.061 26.923 22.51 17.11 37.53 2.69
5647 19055 9.545105 TTTAACTCAACTTGCAATTGATTTGAT 57.455 25.926 22.51 12.43 37.53 2.57
5648 19056 9.545105 TTAACTCAACTTGCAATTGATTTGATT 57.455 25.926 22.51 15.20 37.53 2.57
5652 19062 9.967245 CTCAACTTGCAATTGATTTGATTATTG 57.033 29.630 10.34 1.13 37.53 1.90
5688 19098 7.945033 TCAAAATAAAATGAGCTGTGAAACC 57.055 32.000 0.00 0.00 34.36 3.27
5705 19115 0.698238 ACCACAATGGCCTAGCTCAA 59.302 50.000 3.32 0.00 42.67 3.02
5707 19117 2.291800 ACCACAATGGCCTAGCTCAATT 60.292 45.455 3.32 0.00 42.67 2.32
5738 19153 4.615452 GCTCTTGCTTTGAACCTGATCAAG 60.615 45.833 0.00 0.00 40.21 3.02
5740 19155 4.516698 TCTTGCTTTGAACCTGATCAAGTC 59.483 41.667 0.00 0.00 40.21 3.01
5761 19176 2.280628 GCTAATCACGACCCAAAGAGG 58.719 52.381 0.00 0.00 37.03 3.69
5762 19177 2.354805 GCTAATCACGACCCAAAGAGGT 60.355 50.000 0.00 0.00 45.12 3.85
5763 19178 3.118884 GCTAATCACGACCCAAAGAGGTA 60.119 47.826 0.00 0.00 41.42 3.08
5764 19179 3.611766 AATCACGACCCAAAGAGGTAG 57.388 47.619 0.00 0.00 41.42 3.18
5765 19180 2.005370 TCACGACCCAAAGAGGTAGT 57.995 50.000 0.00 0.00 45.44 2.73
5766 19181 1.891150 TCACGACCCAAAGAGGTAGTC 59.109 52.381 0.00 0.00 43.05 2.59
5767 19182 1.067071 CACGACCCAAAGAGGTAGTCC 60.067 57.143 0.00 0.00 43.05 3.85
5768 19183 0.172803 CGACCCAAAGAGGTAGTCCG 59.827 60.000 0.00 0.00 41.42 4.79
5769 19184 0.108281 GACCCAAAGAGGTAGTCCGC 60.108 60.000 0.00 0.00 41.42 5.54
5770 19185 1.153628 CCCAAAGAGGTAGTCCGCG 60.154 63.158 0.00 0.00 38.56 6.46
5771 19186 1.810030 CCAAAGAGGTAGTCCGCGC 60.810 63.158 0.00 0.00 38.56 6.86
5772 19187 1.810030 CAAAGAGGTAGTCCGCGCC 60.810 63.158 0.00 0.00 38.56 6.53
5773 19188 2.280552 AAAGAGGTAGTCCGCGCCA 61.281 57.895 0.00 0.00 38.56 5.69
5774 19189 1.614241 AAAGAGGTAGTCCGCGCCAT 61.614 55.000 0.00 0.00 38.56 4.40
5775 19190 1.614241 AAGAGGTAGTCCGCGCCATT 61.614 55.000 0.00 0.00 38.56 3.16
5776 19191 1.153429 GAGGTAGTCCGCGCCATTT 60.153 57.895 0.00 0.00 39.05 2.32
5777 19192 0.743345 GAGGTAGTCCGCGCCATTTT 60.743 55.000 0.00 0.00 39.05 1.82
5778 19193 0.743345 AGGTAGTCCGCGCCATTTTC 60.743 55.000 0.00 0.00 39.05 2.29
5795 19210 7.812669 CGCCATTTTCCATAAGTTAGTTTTTCT 59.187 33.333 0.00 0.00 0.00 2.52
5816 19231 9.717942 TTTTCTTTTTGTCTTTTTGAGAATCCA 57.282 25.926 0.00 0.00 35.79 3.41
5817 19232 9.717942 TTTCTTTTTGTCTTTTTGAGAATCCAA 57.282 25.926 0.00 0.00 35.79 3.53
5818 19233 9.889128 TTCTTTTTGTCTTTTTGAGAATCCAAT 57.111 25.926 0.00 0.00 35.79 3.16
5819 19234 9.316730 TCTTTTTGTCTTTTTGAGAATCCAATG 57.683 29.630 0.00 0.00 35.79 2.82
5821 19236 8.422973 TTTTGTCTTTTTGAGAATCCAATGTG 57.577 30.769 0.00 0.00 35.79 3.21
5823 19238 7.815840 TGTCTTTTTGAGAATCCAATGTGTA 57.184 32.000 0.00 0.00 35.79 2.90
5824 19239 7.648142 TGTCTTTTTGAGAATCCAATGTGTAC 58.352 34.615 0.00 0.00 35.79 2.90
5825 19240 6.797033 GTCTTTTTGAGAATCCAATGTGTACG 59.203 38.462 0.00 0.00 35.79 3.67
5826 19241 6.708502 TCTTTTTGAGAATCCAATGTGTACGA 59.291 34.615 0.00 0.00 0.00 3.43
5827 19242 6.869315 TTTTGAGAATCCAATGTGTACGAA 57.131 33.333 0.00 0.00 0.00 3.85
5828 19243 6.869315 TTTGAGAATCCAATGTGTACGAAA 57.131 33.333 0.00 0.00 0.00 3.46
5830 19245 6.421377 TGAGAATCCAATGTGTACGAAATG 57.579 37.500 0.00 0.00 0.00 2.32
5832 19247 5.253330 AGAATCCAATGTGTACGAAATGGT 58.747 37.500 0.00 0.00 0.00 3.55
5833 19248 5.710099 AGAATCCAATGTGTACGAAATGGTT 59.290 36.000 0.00 2.92 0.00 3.67
5835 19250 5.866335 TCCAATGTGTACGAAATGGTTAC 57.134 39.130 0.00 0.00 0.00 2.50
5836 19251 4.389382 TCCAATGTGTACGAAATGGTTACG 59.611 41.667 0.00 0.00 0.00 3.18
5837 19252 4.389382 CCAATGTGTACGAAATGGTTACGA 59.611 41.667 0.00 0.00 0.00 3.43
5838 19253 5.107026 CCAATGTGTACGAAATGGTTACGAA 60.107 40.000 0.00 0.00 0.00 3.85
5840 19255 5.327502 TGTGTACGAAATGGTTACGAAAC 57.672 39.130 0.00 0.00 34.66 2.78
5841 19256 5.049167 TGTGTACGAAATGGTTACGAAACT 58.951 37.500 0.00 0.00 35.81 2.66
5842 19257 5.175491 TGTGTACGAAATGGTTACGAAACTC 59.825 40.000 0.00 0.00 35.81 3.01
5843 19258 4.382457 TGTACGAAATGGTTACGAAACTCG 59.618 41.667 0.00 0.00 46.93 4.18
5883 19298 7.506114 TGTAGACAAGTATTTTGAAGTCTGGT 58.494 34.615 0.00 0.00 37.00 4.00
5885 19300 6.357367 AGACAAGTATTTTGAAGTCTGGTGT 58.643 36.000 0.00 0.00 35.24 4.16
5891 19308 7.155328 AGTATTTTGAAGTCTGGTGTCTACTG 58.845 38.462 0.00 0.00 0.00 2.74
5895 19312 4.476297 TGAAGTCTGGTGTCTACTGGTAA 58.524 43.478 0.00 0.00 0.00 2.85
5912 19329 7.158099 ACTGGTAAAAACATTATCAAGGAGC 57.842 36.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.050275 GACAGCGTGGGCAACTCC 61.050 66.667 0.00 0.00 43.41 3.85
11 12 1.672356 ATGACAGCGTGGGCAACTC 60.672 57.895 0.00 0.00 43.41 3.01
12 13 1.968017 CATGACAGCGTGGGCAACT 60.968 57.895 0.00 0.00 43.41 3.16
19 20 1.016130 GTCTGGTCCATGACAGCGTG 61.016 60.000 13.52 0.00 33.68 5.34
20 21 1.293498 GTCTGGTCCATGACAGCGT 59.707 57.895 13.52 0.00 33.68 5.07
21 22 0.320683 TTGTCTGGTCCATGACAGCG 60.321 55.000 17.92 0.00 42.98 5.18
22 23 1.446907 CTTGTCTGGTCCATGACAGC 58.553 55.000 17.92 0.00 42.98 4.40
23 24 1.339438 CCCTTGTCTGGTCCATGACAG 60.339 57.143 17.92 13.82 42.98 3.51
24 25 0.692476 CCCTTGTCTGGTCCATGACA 59.308 55.000 15.92 15.92 40.86 3.58
25 26 0.693049 ACCCTTGTCTGGTCCATGAC 59.307 55.000 12.17 12.17 0.00 3.06
26 27 2.187958 CTACCCTTGTCTGGTCCATGA 58.812 52.381 0.00 0.00 37.31 3.07
27 28 2.187958 TCTACCCTTGTCTGGTCCATG 58.812 52.381 0.00 0.00 37.31 3.66
31 32 2.170817 GGGATTCTACCCTTGTCTGGTC 59.829 54.545 0.00 0.00 45.90 4.02
32 33 2.197465 GGGATTCTACCCTTGTCTGGT 58.803 52.381 0.00 0.00 45.90 4.00
63 64 4.988598 AACACGTCGGCAGCTGGG 62.989 66.667 17.12 0.00 0.00 4.45
65 66 4.374702 GCAACACGTCGGCAGCTG 62.375 66.667 10.11 10.11 0.00 4.24
66 67 4.908687 TGCAACACGTCGGCAGCT 62.909 61.111 0.00 0.00 32.95 4.24
67 68 3.651480 GATGCAACACGTCGGCAGC 62.651 63.158 10.54 8.01 41.40 5.25
68 69 2.476051 GATGCAACACGTCGGCAG 59.524 61.111 10.54 0.00 41.40 4.85
69 70 3.047280 GGATGCAACACGTCGGCA 61.047 61.111 7.64 7.64 42.43 5.69
70 71 4.147322 CGGATGCAACACGTCGGC 62.147 66.667 0.00 0.00 34.88 5.54
71 72 4.147322 GCGGATGCAACACGTCGG 62.147 66.667 9.29 0.00 42.15 4.79
72 73 4.147322 GGCGGATGCAACACGTCG 62.147 66.667 9.29 0.00 45.35 5.12
74 75 3.353836 GTGGCGGATGCAACACGT 61.354 61.111 9.29 0.00 44.95 4.49
97 98 0.528924 TGGTCAGTGGATTACGGTCG 59.471 55.000 0.00 0.00 0.00 4.79
98 99 2.618053 CTTGGTCAGTGGATTACGGTC 58.382 52.381 0.00 0.00 0.00 4.79
99 100 1.278127 CCTTGGTCAGTGGATTACGGT 59.722 52.381 0.00 0.00 0.00 4.83
100 101 2.012051 GCCTTGGTCAGTGGATTACGG 61.012 57.143 0.00 0.00 0.00 4.02
102 103 1.682087 GGGCCTTGGTCAGTGGATTAC 60.682 57.143 0.84 0.00 0.00 1.89
103 104 0.623723 GGGCCTTGGTCAGTGGATTA 59.376 55.000 0.84 0.00 0.00 1.75
106 107 2.449518 TGGGCCTTGGTCAGTGGA 60.450 61.111 4.53 0.00 0.00 4.02
107 108 2.282462 GTGGGCCTTGGTCAGTGG 60.282 66.667 4.53 0.00 0.00 4.00
108 109 2.669569 CGTGGGCCTTGGTCAGTG 60.670 66.667 4.53 0.00 0.00 3.66
109 110 4.643387 GCGTGGGCCTTGGTCAGT 62.643 66.667 4.53 0.00 0.00 3.41
121 122 3.164269 ATCTAGGCCCAGGCGTGG 61.164 66.667 18.72 18.72 44.56 4.94
122 123 2.423446 GATCTAGGCCCAGGCGTG 59.577 66.667 13.96 0.00 43.06 5.34
123 124 2.844839 GGATCTAGGCCCAGGCGT 60.845 66.667 9.13 9.13 43.06 5.68
125 126 3.631046 CCGGATCTAGGCCCAGGC 61.631 72.222 0.00 0.00 41.06 4.85
180 181 3.771160 ATCGCGGTCACCAGGGAC 61.771 66.667 6.13 0.00 37.06 4.46
181 182 3.770040 CATCGCGGTCACCAGGGA 61.770 66.667 6.13 7.66 0.00 4.20
183 184 4.758251 TGCATCGCGGTCACCAGG 62.758 66.667 6.13 0.00 0.00 4.45
184 185 3.490759 GTGCATCGCGGTCACCAG 61.491 66.667 6.13 0.00 0.00 4.00
187 188 3.490759 CTGGTGCATCGCGGTCAC 61.491 66.667 6.13 11.79 0.00 3.67
194 195 4.794439 TCGCCGTCTGGTGCATCG 62.794 66.667 0.00 0.00 45.79 3.84
195 196 2.434185 TTCGCCGTCTGGTGCATC 60.434 61.111 0.00 0.00 45.79 3.91
218 219 4.717629 TCCGTTCGTCTGCGGCAG 62.718 66.667 23.72 23.72 46.79 4.85
219 220 3.583276 ATTCCGTTCGTCTGCGGCA 62.583 57.895 1.29 1.29 46.79 5.69
220 221 2.799540 GATTCCGTTCGTCTGCGGC 61.800 63.158 0.00 0.00 46.79 6.53
223 224 2.695646 GCGATTCCGTTCGTCTGC 59.304 61.111 0.00 0.00 41.16 4.26
224 225 3.384927 GGCGATTCCGTTCGTCTG 58.615 61.111 0.00 0.00 40.47 3.51
301 302 2.943653 GGTTTTCCCGCTCGTGTG 59.056 61.111 0.00 0.00 0.00 3.82
312 313 2.046604 CGGGGACTCGGGGTTTTC 60.047 66.667 0.00 0.00 0.00 2.29
371 372 3.036959 TCCTCCCCCTCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
373 374 3.036959 TCTCCTCCCCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
375 376 2.612251 CCTCTCCTCCCCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
376 377 3.039526 CCCTCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
378 379 4.179599 CCCCCTCTCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
380 381 4.179599 CTCCCCCTCTCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
381 382 3.369388 ACTCCCCCTCTCCTCCCC 61.369 72.222 0.00 0.00 0.00 4.81
382 383 2.284151 GACTCCCCCTCTCCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
384 385 2.123640 CGGACTCCCCCTCTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
385 386 3.756783 CCGGACTCCCCCTCTCCT 61.757 72.222 0.00 0.00 0.00 3.69
395 396 3.183776 GATCTCGTCGGCCGGACTC 62.184 68.421 27.83 12.51 43.79 3.36
396 397 3.210528 GATCTCGTCGGCCGGACT 61.211 66.667 27.83 6.13 43.79 3.85
398 399 3.209812 CAGATCTCGTCGGCCGGA 61.210 66.667 27.83 15.37 37.11 5.14
399 400 4.271816 CCAGATCTCGTCGGCCGG 62.272 72.222 27.83 10.69 37.11 6.13
400 401 4.271816 CCCAGATCTCGTCGGCCG 62.272 72.222 22.12 22.12 38.13 6.13
401 402 3.917760 CCCCAGATCTCGTCGGCC 61.918 72.222 0.00 0.00 0.00 6.13
402 403 1.956629 TTTCCCCAGATCTCGTCGGC 61.957 60.000 0.00 0.00 0.00 5.54
403 404 0.535335 TTTTCCCCAGATCTCGTCGG 59.465 55.000 0.00 0.00 0.00 4.79
404 405 1.471676 CCTTTTCCCCAGATCTCGTCG 60.472 57.143 0.00 0.00 0.00 5.12
405 406 1.831736 TCCTTTTCCCCAGATCTCGTC 59.168 52.381 0.00 0.00 0.00 4.20
406 407 1.952621 TCCTTTTCCCCAGATCTCGT 58.047 50.000 0.00 0.00 0.00 4.18
407 408 2.435805 TCATCCTTTTCCCCAGATCTCG 59.564 50.000 0.00 0.00 0.00 4.04
408 409 4.103785 TCATCATCCTTTTCCCCAGATCTC 59.896 45.833 0.00 0.00 0.00 2.75
409 410 4.050037 TCATCATCCTTTTCCCCAGATCT 58.950 43.478 0.00 0.00 0.00 2.75
411 412 4.448787 CCATCATCATCCTTTTCCCCAGAT 60.449 45.833 0.00 0.00 0.00 2.90
412 413 3.117398 CCATCATCATCCTTTTCCCCAGA 60.117 47.826 0.00 0.00 0.00 3.86
414 415 2.858133 TCCATCATCATCCTTTTCCCCA 59.142 45.455 0.00 0.00 0.00 4.96
416 417 3.320256 GCTTCCATCATCATCCTTTTCCC 59.680 47.826 0.00 0.00 0.00 3.97
417 418 3.004106 CGCTTCCATCATCATCCTTTTCC 59.996 47.826 0.00 0.00 0.00 3.13
418 419 3.004106 CCGCTTCCATCATCATCCTTTTC 59.996 47.826 0.00 0.00 0.00 2.29
419 420 2.954318 CCGCTTCCATCATCATCCTTTT 59.046 45.455 0.00 0.00 0.00 2.27
421 422 1.492176 ACCGCTTCCATCATCATCCTT 59.508 47.619 0.00 0.00 0.00 3.36
423 424 2.300152 TCTACCGCTTCCATCATCATCC 59.700 50.000 0.00 0.00 0.00 3.51
424 425 3.667497 TCTACCGCTTCCATCATCATC 57.333 47.619 0.00 0.00 0.00 2.92
425 426 3.307269 CCATCTACCGCTTCCATCATCAT 60.307 47.826 0.00 0.00 0.00 2.45
426 427 2.037641 CCATCTACCGCTTCCATCATCA 59.962 50.000 0.00 0.00 0.00 3.07
427 428 2.037772 ACCATCTACCGCTTCCATCATC 59.962 50.000 0.00 0.00 0.00 2.92
429 430 1.138859 CACCATCTACCGCTTCCATCA 59.861 52.381 0.00 0.00 0.00 3.07
430 431 1.412710 TCACCATCTACCGCTTCCATC 59.587 52.381 0.00 0.00 0.00 3.51
432 433 0.824109 CTCACCATCTACCGCTTCCA 59.176 55.000 0.00 0.00 0.00 3.53
434 435 0.530870 GCCTCACCATCTACCGCTTC 60.531 60.000 0.00 0.00 0.00 3.86
435 436 1.522569 GCCTCACCATCTACCGCTT 59.477 57.895 0.00 0.00 0.00 4.68
436 437 2.435693 GGCCTCACCATCTACCGCT 61.436 63.158 0.00 0.00 38.86 5.52
437 438 1.972660 AAGGCCTCACCATCTACCGC 61.973 60.000 5.23 0.00 43.14 5.68
439 440 0.464554 GCAAGGCCTCACCATCTACC 60.465 60.000 5.23 0.00 43.14 3.18
440 441 0.464554 GGCAAGGCCTCACCATCTAC 60.465 60.000 17.23 0.00 46.69 2.59
441 442 1.915228 GGCAAGGCCTCACCATCTA 59.085 57.895 17.23 0.00 46.69 1.98
458 459 3.835790 TTTCGGTGCCACCTTCGGG 62.836 63.158 12.94 0.00 35.66 5.14
460 461 0.168128 GATTTTCGGTGCCACCTTCG 59.832 55.000 12.94 0.00 35.66 3.79
461 462 1.243902 TGATTTTCGGTGCCACCTTC 58.756 50.000 12.94 1.93 35.66 3.46
462 463 1.923356 ATGATTTTCGGTGCCACCTT 58.077 45.000 12.94 0.00 35.66 3.50
464 465 1.818674 AGAATGATTTTCGGTGCCACC 59.181 47.619 2.98 2.98 34.05 4.61
465 466 2.159379 GGAGAATGATTTTCGGTGCCAC 60.159 50.000 0.00 0.00 0.00 5.01
466 467 2.091541 GGAGAATGATTTTCGGTGCCA 58.908 47.619 0.00 0.00 0.00 4.92
467 468 2.091541 TGGAGAATGATTTTCGGTGCC 58.908 47.619 0.00 0.00 0.00 5.01
468 469 3.848272 TTGGAGAATGATTTTCGGTGC 57.152 42.857 0.00 0.00 0.00 5.01
469 470 5.030295 CGATTTGGAGAATGATTTTCGGTG 58.970 41.667 0.00 0.00 0.00 4.94
470 471 4.700213 ACGATTTGGAGAATGATTTTCGGT 59.300 37.500 0.00 0.00 0.00 4.69
471 472 5.030295 CACGATTTGGAGAATGATTTTCGG 58.970 41.667 0.00 0.00 0.00 4.30
473 474 5.401550 TGCACGATTTGGAGAATGATTTTC 58.598 37.500 0.00 0.00 0.00 2.29
474 475 5.389859 TGCACGATTTGGAGAATGATTTT 57.610 34.783 0.00 0.00 0.00 1.82
475 476 5.389859 TTGCACGATTTGGAGAATGATTT 57.610 34.783 0.00 0.00 0.00 2.17
476 477 4.676196 GCTTGCACGATTTGGAGAATGATT 60.676 41.667 0.00 0.00 0.00 2.57
478 479 2.162208 GCTTGCACGATTTGGAGAATGA 59.838 45.455 0.00 0.00 0.00 2.57
479 480 2.523015 GCTTGCACGATTTGGAGAATG 58.477 47.619 0.00 0.00 0.00 2.67
480 481 1.474077 GGCTTGCACGATTTGGAGAAT 59.526 47.619 0.00 0.00 0.00 2.40
481 482 0.881118 GGCTTGCACGATTTGGAGAA 59.119 50.000 0.00 0.00 0.00 2.87
482 483 0.036732 AGGCTTGCACGATTTGGAGA 59.963 50.000 0.00 0.00 0.00 3.71
484 485 0.036732 AGAGGCTTGCACGATTTGGA 59.963 50.000 0.00 0.00 0.00 3.53
485 486 0.169672 CAGAGGCTTGCACGATTTGG 59.830 55.000 0.00 0.00 0.00 3.28
486 487 0.169672 CCAGAGGCTTGCACGATTTG 59.830 55.000 0.00 0.00 0.00 2.32
487 488 0.250901 ACCAGAGGCTTGCACGATTT 60.251 50.000 0.00 0.00 0.00 2.17
488 489 0.613260 TACCAGAGGCTTGCACGATT 59.387 50.000 0.00 0.00 0.00 3.34
489 490 0.108138 GTACCAGAGGCTTGCACGAT 60.108 55.000 0.00 0.00 0.00 3.73
490 491 1.292223 GTACCAGAGGCTTGCACGA 59.708 57.895 0.00 0.00 0.00 4.35
491 492 1.741770 GGTACCAGAGGCTTGCACG 60.742 63.158 7.15 0.00 0.00 5.34
493 494 0.698238 AATGGTACCAGAGGCTTGCA 59.302 50.000 21.41 0.00 0.00 4.08
494 495 1.474077 CAAATGGTACCAGAGGCTTGC 59.526 52.381 21.41 0.00 0.00 4.01
495 496 3.071874 TCAAATGGTACCAGAGGCTTG 57.928 47.619 21.41 16.39 0.00 4.01
496 497 3.806949 TTCAAATGGTACCAGAGGCTT 57.193 42.857 21.41 6.29 0.00 4.35
498 499 4.747810 CATTTTCAAATGGTACCAGAGGC 58.252 43.478 21.41 0.00 41.54 4.70
510 511 5.653769 ACCATCGTCTCATCCATTTTCAAAT 59.346 36.000 0.00 0.00 0.00 2.32
512 513 4.588899 ACCATCGTCTCATCCATTTTCAA 58.411 39.130 0.00 0.00 0.00 2.69
513 514 4.220693 ACCATCGTCTCATCCATTTTCA 57.779 40.909 0.00 0.00 0.00 2.69
514 515 5.567138 AAACCATCGTCTCATCCATTTTC 57.433 39.130 0.00 0.00 0.00 2.29
517 518 4.130118 GCTAAACCATCGTCTCATCCATT 58.870 43.478 0.00 0.00 0.00 3.16
519 520 2.766263 AGCTAAACCATCGTCTCATCCA 59.234 45.455 0.00 0.00 0.00 3.41
520 521 3.460857 AGCTAAACCATCGTCTCATCC 57.539 47.619 0.00 0.00 0.00 3.51
521 522 5.582665 AGAAAAGCTAAACCATCGTCTCATC 59.417 40.000 0.00 0.00 0.00 2.92
522 523 5.491982 AGAAAAGCTAAACCATCGTCTCAT 58.508 37.500 0.00 0.00 0.00 2.90
523 524 4.894784 AGAAAAGCTAAACCATCGTCTCA 58.105 39.130 0.00 0.00 0.00 3.27
524 525 6.510317 GCATAGAAAAGCTAAACCATCGTCTC 60.510 42.308 0.00 0.00 31.66 3.36
525 526 5.294552 GCATAGAAAAGCTAAACCATCGTCT 59.705 40.000 0.00 0.00 31.66 4.18
526 527 5.064707 TGCATAGAAAAGCTAAACCATCGTC 59.935 40.000 0.00 0.00 31.66 4.20
528 529 5.484173 TGCATAGAAAAGCTAAACCATCG 57.516 39.130 0.00 0.00 31.66 3.84
529 530 7.031226 TGATGCATAGAAAAGCTAAACCATC 57.969 36.000 0.00 0.00 35.14 3.51
531 532 6.832520 TTGATGCATAGAAAAGCTAAACCA 57.167 33.333 0.00 0.00 31.66 3.67
532 533 7.975616 TGATTTGATGCATAGAAAAGCTAAACC 59.024 33.333 0.00 0.00 31.66 3.27
533 534 8.915871 TGATTTGATGCATAGAAAAGCTAAAC 57.084 30.769 0.00 0.00 31.66 2.01
534 535 8.959548 TCTGATTTGATGCATAGAAAAGCTAAA 58.040 29.630 0.00 0.00 31.66 1.85
535 536 8.510243 TCTGATTTGATGCATAGAAAAGCTAA 57.490 30.769 0.00 0.00 31.66 3.09
536 537 8.687292 ATCTGATTTGATGCATAGAAAAGCTA 57.313 30.769 0.00 0.00 0.00 3.32
537 538 7.502895 AGATCTGATTTGATGCATAGAAAAGCT 59.497 33.333 0.00 0.00 0.00 3.74
541 542 9.486497 GTCTAGATCTGATTTGATGCATAGAAA 57.514 33.333 5.18 2.19 0.00 2.52
545 546 7.454066 AGGAGTCTAGATCTGATTTGATGCATA 59.546 37.037 5.18 0.00 0.00 3.14
556 557 6.428083 ACGAATAGAGGAGTCTAGATCTGA 57.572 41.667 5.18 0.00 38.73 3.27
559 560 7.117236 CACTGTACGAATAGAGGAGTCTAGATC 59.883 44.444 0.00 0.00 38.73 2.75
562 563 5.467399 CCACTGTACGAATAGAGGAGTCTAG 59.533 48.000 0.00 0.00 38.73 2.43
563 564 5.129980 TCCACTGTACGAATAGAGGAGTCTA 59.870 44.000 0.00 0.00 39.70 2.59
565 566 4.197750 TCCACTGTACGAATAGAGGAGTC 58.802 47.826 0.00 0.00 30.48 3.36
576 578 0.395311 CCTAGCCCTCCACTGTACGA 60.395 60.000 0.00 0.00 0.00 3.43
577 579 1.392710 CCCTAGCCCTCCACTGTACG 61.393 65.000 0.00 0.00 0.00 3.67
581 583 2.427245 CGACCCTAGCCCTCCACTG 61.427 68.421 0.00 0.00 0.00 3.66
607 609 1.107945 TGTGGTTAGCGATCCGATCA 58.892 50.000 9.07 0.00 0.00 2.92
698 710 2.171659 TCCAACTGTACCACATGTGTGT 59.828 45.455 23.79 21.30 44.21 3.72
735 747 6.914215 ACGTTATAATAGTGTATGTGTCCACG 59.086 38.462 0.00 0.00 36.69 4.94
747 759 2.086549 GCGCGTCGACGTTATAATAGTG 59.913 50.000 35.48 14.11 42.22 2.74
748 760 2.301787 GCGCGTCGACGTTATAATAGT 58.698 47.619 35.48 0.00 42.22 2.12
749 761 1.640915 GGCGCGTCGACGTTATAATAG 59.359 52.381 35.48 18.31 42.22 1.73
1260 1285 2.444895 ATGGAGAGGCCGAGGTCC 60.445 66.667 0.00 2.67 40.66 4.46
1293 1318 1.529010 TGACAGGGCAGCTTGGTTG 60.529 57.895 0.00 0.00 0.00 3.77
1295 1320 2.113986 GTGACAGGGCAGCTTGGT 59.886 61.111 0.00 0.00 0.00 3.67
1297 1322 1.673665 GAGGTGACAGGGCAGCTTG 60.674 63.158 8.43 0.00 45.74 4.01
1298 1323 2.753029 GAGGTGACAGGGCAGCTT 59.247 61.111 8.43 0.00 45.74 3.74
1302 1327 2.607750 GGAGGAGGTGACAGGGCA 60.608 66.667 0.00 0.00 0.00 5.36
1307 1332 0.325933 CAAGCATGGAGGAGGTGACA 59.674 55.000 0.00 0.00 0.00 3.58
1308 1333 1.028868 GCAAGCATGGAGGAGGTGAC 61.029 60.000 0.00 0.00 0.00 3.67
1336 1365 6.062258 ACATTTTAGGCAAGGAAGTAGCTA 57.938 37.500 0.00 0.00 0.00 3.32
1338 1367 5.183140 TCAACATTTTAGGCAAGGAAGTAGC 59.817 40.000 0.00 0.00 0.00 3.58
1342 1371 5.712152 AGTCAACATTTTAGGCAAGGAAG 57.288 39.130 0.00 0.00 0.00 3.46
1343 1372 5.183140 GCTAGTCAACATTTTAGGCAAGGAA 59.817 40.000 0.00 0.00 0.00 3.36
1344 1373 4.700213 GCTAGTCAACATTTTAGGCAAGGA 59.300 41.667 0.00 0.00 0.00 3.36
1345 1374 4.702131 AGCTAGTCAACATTTTAGGCAAGG 59.298 41.667 0.00 0.00 0.00 3.61
1347 1376 5.106712 CGAAGCTAGTCAACATTTTAGGCAA 60.107 40.000 0.00 0.00 0.00 4.52
1349 1378 4.392138 ACGAAGCTAGTCAACATTTTAGGC 59.608 41.667 0.00 0.00 0.00 3.93
1350 1379 5.063564 GGACGAAGCTAGTCAACATTTTAGG 59.936 44.000 19.69 0.00 40.20 2.69
1499 1537 9.945904 CTTAAGTAGTAGTCAAAGGGAGAAAAT 57.054 33.333 0.00 0.00 0.00 1.82
1560 1598 9.817809 AACTAATTAAATAGCTCACGAGATTCA 57.182 29.630 0.00 0.00 0.00 2.57
1598 1636 3.181476 GCAACACCAACTCCAAATTCAGT 60.181 43.478 0.00 0.00 0.00 3.41
1697 2147 7.042051 TCAGACAACAAGCACATTAGAGTAAAC 60.042 37.037 0.00 0.00 0.00 2.01
1716 2176 6.618287 ACGACTGAAATTTCAATCAGACAA 57.382 33.333 24.63 0.53 44.64 3.18
1718 2178 6.658831 TCAACGACTGAAATTTCAATCAGAC 58.341 36.000 24.63 12.17 44.64 3.51
1795 2255 0.861185 CGGGTGCATCATGTCATACG 59.139 55.000 0.00 0.00 0.00 3.06
1837 2302 2.322161 CAAGCATGAAGGAAAAGTGCG 58.678 47.619 0.00 0.00 40.54 5.34
1859 2344 5.231568 GTCCTGTAGATTAAAACACGGATCG 59.768 44.000 0.00 0.00 30.77 3.69
1860 2345 6.338937 AGTCCTGTAGATTAAAACACGGATC 58.661 40.000 0.00 0.00 30.77 3.36
1864 2349 5.159209 ACGAGTCCTGTAGATTAAAACACG 58.841 41.667 0.00 0.00 0.00 4.49
1868 2353 5.633830 ACGACGAGTCCTGTAGATTAAAA 57.366 39.130 0.00 0.00 0.00 1.52
1974 2460 9.638239 GCATGAACATTCTAGGAACAAAATAAA 57.362 29.630 0.00 0.00 0.00 1.40
2000 2486 2.621998 CTGAAAGCATAAGGCCATGAGG 59.378 50.000 5.01 0.00 46.50 3.86
2001 2487 3.548770 TCTGAAAGCATAAGGCCATGAG 58.451 45.455 5.01 0.00 46.50 2.90
2283 3702 0.664767 CTAGTGAGAATAGGCGGCGC 60.665 60.000 26.17 26.17 0.00 6.53
2359 3799 5.600484 AGAAGATACCAAGGGTGATAGACAG 59.400 44.000 0.00 0.00 36.19 3.51
2397 3838 1.962807 CTCCAAGGAACAAACATGCCA 59.037 47.619 0.00 0.00 0.00 4.92
2437 4839 7.568199 AATATGGTAGGTGTTTAGTTGCATC 57.432 36.000 0.00 0.00 0.00 3.91
2520 6653 9.734620 TGTCAGAAATTAATTGAAAACTCTGTG 57.265 29.630 18.24 4.82 32.68 3.66
2522 6655 9.185192 GGTGTCAGAAATTAATTGAAAACTCTG 57.815 33.333 14.92 14.92 0.00 3.35
2523 6656 8.360390 GGGTGTCAGAAATTAATTGAAAACTCT 58.640 33.333 0.39 0.00 0.00 3.24
2524 6657 7.326063 CGGGTGTCAGAAATTAATTGAAAACTC 59.674 37.037 0.39 0.00 0.00 3.01
2526 6659 6.364976 CCGGGTGTCAGAAATTAATTGAAAAC 59.635 38.462 0.39 0.00 0.00 2.43
2530 6663 4.658063 ACCGGGTGTCAGAAATTAATTGA 58.342 39.130 6.32 0.00 0.00 2.57
2531 6664 5.385509 AACCGGGTGTCAGAAATTAATTG 57.614 39.130 6.32 0.00 0.00 2.32
2532 6665 5.773176 AGAAACCGGGTGTCAGAAATTAATT 59.227 36.000 19.35 0.00 0.00 1.40
2552 6686 3.429492 TGGCAGATATTTGCACCAGAAA 58.571 40.909 18.91 0.00 45.86 2.52
2558 6693 4.280174 AGAATGGATGGCAGATATTTGCAC 59.720 41.667 18.91 9.53 45.86 4.57
2566 6701 3.203710 TCCTGAAAGAATGGATGGCAGAT 59.796 43.478 0.00 0.00 34.07 2.90
2571 6706 3.973425 AGGTTCCTGAAAGAATGGATGG 58.027 45.455 0.00 0.00 34.07 3.51
2815 6962 7.286087 TCAAGTGCTTGCCTTTATATCATTCAT 59.714 33.333 7.03 0.00 40.24 2.57
2841 6988 7.750655 AGTCAATAAGAGGGAGAAAAAGAGTT 58.249 34.615 0.00 0.00 0.00 3.01
3009 7158 4.298332 CGTAGCCTTTTTGTTTGCAGATT 58.702 39.130 0.00 0.00 0.00 2.40
3091 7240 5.555966 TGGACCAAAAATATGAAAAAGGGC 58.444 37.500 0.00 0.00 0.00 5.19
3274 7430 7.549839 ACAACTTACTATGCCTAAACGATACA 58.450 34.615 0.00 0.00 0.00 2.29
3275 7431 7.998753 ACAACTTACTATGCCTAAACGATAC 57.001 36.000 0.00 0.00 0.00 2.24
3355 7530 3.382083 AACAACCAAACACCTCTCCTT 57.618 42.857 0.00 0.00 0.00 3.36
3404 7579 8.447053 TGAAAGAAATTTTTGCCAAAGTGTAAC 58.553 29.630 0.00 0.00 0.00 2.50
3405 7580 8.553459 TGAAAGAAATTTTTGCCAAAGTGTAA 57.447 26.923 0.00 0.00 0.00 2.41
3406 7581 8.553459 TTGAAAGAAATTTTTGCCAAAGTGTA 57.447 26.923 0.00 0.00 0.00 2.90
3407 7582 7.174772 ACTTGAAAGAAATTTTTGCCAAAGTGT 59.825 29.630 0.00 0.00 0.00 3.55
3408 7583 7.529158 ACTTGAAAGAAATTTTTGCCAAAGTG 58.471 30.769 0.00 0.00 0.00 3.16
3409 7584 7.390162 TGACTTGAAAGAAATTTTTGCCAAAGT 59.610 29.630 0.00 0.00 0.00 2.66
3410 7585 7.693536 GTGACTTGAAAGAAATTTTTGCCAAAG 59.306 33.333 0.00 0.00 0.00 2.77
3411 7586 7.173907 TGTGACTTGAAAGAAATTTTTGCCAAA 59.826 29.630 0.00 0.00 0.00 3.28
3412 7587 6.652481 TGTGACTTGAAAGAAATTTTTGCCAA 59.348 30.769 0.00 0.00 0.00 4.52
3413 7588 6.169094 TGTGACTTGAAAGAAATTTTTGCCA 58.831 32.000 0.00 0.00 0.00 4.92
3414 7589 6.238184 CCTGTGACTTGAAAGAAATTTTTGCC 60.238 38.462 0.00 0.00 0.00 4.52
3415 7590 6.238184 CCCTGTGACTTGAAAGAAATTTTTGC 60.238 38.462 0.00 0.00 0.00 3.68
3416 7591 6.818142 ACCCTGTGACTTGAAAGAAATTTTTG 59.182 34.615 0.00 0.00 0.00 2.44
3417 7592 6.946340 ACCCTGTGACTTGAAAGAAATTTTT 58.054 32.000 0.00 0.00 0.00 1.94
3418 7593 6.544928 ACCCTGTGACTTGAAAGAAATTTT 57.455 33.333 0.00 0.00 0.00 1.82
3419 7594 7.039714 GGATACCCTGTGACTTGAAAGAAATTT 60.040 37.037 0.00 0.00 0.00 1.82
3420 7595 6.434340 GGATACCCTGTGACTTGAAAGAAATT 59.566 38.462 0.00 0.00 0.00 1.82
3421 7596 5.946377 GGATACCCTGTGACTTGAAAGAAAT 59.054 40.000 0.00 0.00 0.00 2.17
3422 7597 5.313712 GGATACCCTGTGACTTGAAAGAAA 58.686 41.667 0.00 0.00 0.00 2.52
3423 7598 4.906618 GGATACCCTGTGACTTGAAAGAA 58.093 43.478 0.00 0.00 0.00 2.52
3424 7599 4.553330 GGATACCCTGTGACTTGAAAGA 57.447 45.455 0.00 0.00 0.00 2.52
3458 7676 6.872920 TCATAATAACAAGGAATTGTTGGGC 58.127 36.000 14.83 0.00 44.11 5.36
3484 7702 8.494347 CTTTATTGAAGATAGCATAGTGCTGAC 58.506 37.037 14.28 8.08 45.25 3.51
3544 7764 6.022163 ACTTTGATTGAGAAAGCAGAATGG 57.978 37.500 0.00 0.00 34.33 3.16
3817 8070 2.670414 GAGACAAGATCGAACCTTGCTG 59.330 50.000 22.82 8.21 43.45 4.41
4006 8410 7.506938 AGAGATCTGAAATTTGAAGTGGGAAAA 59.493 33.333 0.00 0.00 0.00 2.29
4050 8454 2.225467 ACAGAAACTGCAAGAAGGCTC 58.775 47.619 0.00 0.00 37.43 4.70
4191 8609 6.893583 ACAATATGATAAGTTCAGAGTGGCT 58.106 36.000 3.27 0.00 43.88 4.75
4213 8631 5.529430 CCTGTAACAAGTAACCATCACAACA 59.471 40.000 0.00 0.00 0.00 3.33
4227 8647 5.547465 TGTGGTAGATTGTCCTGTAACAAG 58.453 41.667 0.00 0.00 42.09 3.16
4318 8738 1.225745 GTCACGCGGCGAAATGAAG 60.226 57.895 30.94 9.15 0.00 3.02
4319 8739 2.857448 GTCACGCGGCGAAATGAA 59.143 55.556 30.94 4.62 0.00 2.57
4431 8862 1.139058 ACCTCGGACATTATGAGCCAC 59.861 52.381 0.00 0.00 0.00 5.01
4546 9010 3.884895 TCCTAATGCATCGGTTGTGAAT 58.115 40.909 0.00 0.00 0.00 2.57
4770 9235 5.250543 TCATGGTTCAGAACTAATCCTTGGA 59.749 40.000 13.13 0.00 0.00 3.53
4813 9283 8.146479 TGTTTATACAGATGATGAATGAGCAC 57.854 34.615 0.00 0.00 0.00 4.40
4859 9334 1.803922 CGCGCTCACGACCATGTAA 60.804 57.895 5.56 0.00 43.93 2.41
5026 18381 1.668419 ATTCTTGCCTGACATACGGC 58.332 50.000 0.00 0.00 46.46 5.68
5027 18382 3.009723 ACAATTCTTGCCTGACATACGG 58.990 45.455 0.00 0.00 0.00 4.02
5040 18395 1.001378 GCTGACCGTGCAACAATTCTT 60.001 47.619 0.00 0.00 35.74 2.52
5041 18396 0.593128 GCTGACCGTGCAACAATTCT 59.407 50.000 0.00 0.00 35.74 2.40
5043 18398 1.163420 TCGCTGACCGTGCAACAATT 61.163 50.000 0.00 0.00 35.74 2.32
5045 18400 1.565156 GATCGCTGACCGTGCAACAA 61.565 55.000 0.00 0.00 35.74 2.83
5046 18401 2.027073 GATCGCTGACCGTGCAACA 61.027 57.895 0.00 0.00 35.74 3.33
5047 18402 1.291877 AAGATCGCTGACCGTGCAAC 61.292 55.000 0.00 0.00 38.35 4.17
5202 18576 1.826487 AGGAAACGCACGGCCTTTT 60.826 52.632 0.00 0.00 0.00 2.27
5213 18587 2.501223 TACAGCCTCGGCAGGAAACG 62.501 60.000 11.02 0.00 43.65 3.60
5264 18643 2.270352 TGGACGCAGAAACCAAGAAT 57.730 45.000 0.00 0.00 0.00 2.40
5280 18660 5.492895 TGATTAGCTTGATTACCGTTTGGA 58.507 37.500 0.00 0.00 39.21 3.53
5336 18744 1.868997 CTGATCTGCGCAAACGGTT 59.131 52.632 13.05 0.00 40.57 4.44
5341 18749 0.659427 GCTATGCTGATCTGCGCAAA 59.341 50.000 13.05 0.00 39.89 3.68
5366 18774 2.688958 GCACCTCCTCTTATACACGTCT 59.311 50.000 0.00 0.00 0.00 4.18
5371 18779 2.170607 GCCTTGCACCTCCTCTTATACA 59.829 50.000 0.00 0.00 0.00 2.29
5385 18793 1.896660 GTTGAACCGGAGCCTTGCA 60.897 57.895 9.46 0.00 0.00 4.08
5394 18802 3.933332 GAGAAAGGTATGAGTTGAACCGG 59.067 47.826 0.00 0.00 38.37 5.28
5397 18805 3.371285 GCCGAGAAAGGTATGAGTTGAAC 59.629 47.826 0.00 0.00 0.00 3.18
5513 18921 3.906218 CACTATGATGGATCCTCTCCCAA 59.094 47.826 14.23 0.00 44.23 4.12
5518 18926 3.272716 AGCCACTATGATGGATCCTCT 57.727 47.619 14.23 0.00 43.02 3.69
5546 18954 3.103911 GGAACACGCGACGACCTG 61.104 66.667 15.93 0.68 0.00 4.00
5547 18955 4.353437 GGGAACACGCGACGACCT 62.353 66.667 15.93 0.00 0.00 3.85
5688 19098 5.581126 TTTAATTGAGCTAGGCCATTGTG 57.419 39.130 5.01 0.00 0.00 3.33
5724 19134 2.839486 AGCGACTTGATCAGGTTCAA 57.161 45.000 12.24 0.00 34.55 2.69
5725 19135 3.953712 TTAGCGACTTGATCAGGTTCA 57.046 42.857 12.24 0.00 0.00 3.18
5726 19136 4.268884 GTGATTAGCGACTTGATCAGGTTC 59.731 45.833 12.24 7.40 0.00 3.62
5727 19137 4.184629 GTGATTAGCGACTTGATCAGGTT 58.815 43.478 12.24 0.00 0.00 3.50
5728 19138 3.735208 CGTGATTAGCGACTTGATCAGGT 60.735 47.826 10.69 10.69 32.61 4.00
5729 19139 2.791560 CGTGATTAGCGACTTGATCAGG 59.208 50.000 2.78 2.78 0.00 3.86
5730 19140 3.695816 TCGTGATTAGCGACTTGATCAG 58.304 45.455 0.00 0.00 33.09 2.90
5731 19141 3.775661 TCGTGATTAGCGACTTGATCA 57.224 42.857 0.00 0.00 33.09 2.92
5740 19155 1.927174 CTCTTTGGGTCGTGATTAGCG 59.073 52.381 0.00 0.00 0.00 4.26
5761 19176 1.022451 TGGAAAATGGCGCGGACTAC 61.022 55.000 8.83 0.00 0.00 2.73
5762 19177 0.107410 ATGGAAAATGGCGCGGACTA 60.107 50.000 8.83 0.00 0.00 2.59
5763 19178 0.107410 TATGGAAAATGGCGCGGACT 60.107 50.000 8.83 0.00 0.00 3.85
5764 19179 0.736053 TTATGGAAAATGGCGCGGAC 59.264 50.000 8.83 0.00 0.00 4.79
5765 19180 1.021202 CTTATGGAAAATGGCGCGGA 58.979 50.000 8.83 0.00 0.00 5.54
5766 19181 0.738389 ACTTATGGAAAATGGCGCGG 59.262 50.000 8.83 0.00 0.00 6.46
5767 19182 2.559998 AACTTATGGAAAATGGCGCG 57.440 45.000 0.00 0.00 0.00 6.86
5768 19183 4.632538 ACTAACTTATGGAAAATGGCGC 57.367 40.909 0.00 0.00 0.00 6.53
5769 19184 7.812669 AGAAAAACTAACTTATGGAAAATGGCG 59.187 33.333 0.00 0.00 0.00 5.69
5770 19185 9.489084 AAGAAAAACTAACTTATGGAAAATGGC 57.511 29.630 0.00 0.00 0.00 4.40
5795 19210 8.881743 CACATTGGATTCTCAAAAAGACAAAAA 58.118 29.630 0.00 0.00 32.27 1.94
5800 19215 6.797033 CGTACACATTGGATTCTCAAAAAGAC 59.203 38.462 0.00 0.00 32.27 3.01
5802 19217 6.898041 TCGTACACATTGGATTCTCAAAAAG 58.102 36.000 0.00 0.00 0.00 2.27
5809 19224 5.253330 ACCATTTCGTACACATTGGATTCT 58.747 37.500 8.43 0.00 0.00 2.40
5810 19225 5.560966 ACCATTTCGTACACATTGGATTC 57.439 39.130 8.43 0.00 0.00 2.52
5811 19226 5.975693 AACCATTTCGTACACATTGGATT 57.024 34.783 8.43 0.00 0.00 3.01
5812 19227 5.064198 CGTAACCATTTCGTACACATTGGAT 59.936 40.000 8.43 0.90 0.00 3.41
5813 19228 4.389382 CGTAACCATTTCGTACACATTGGA 59.611 41.667 8.43 0.00 0.00 3.53
5814 19229 4.389382 TCGTAACCATTTCGTACACATTGG 59.611 41.667 0.00 0.00 0.00 3.16
5815 19230 5.518529 TCGTAACCATTTCGTACACATTG 57.481 39.130 0.00 0.00 0.00 2.82
5816 19231 6.203338 AGTTTCGTAACCATTTCGTACACATT 59.797 34.615 0.85 0.00 34.71 2.71
5817 19232 5.697633 AGTTTCGTAACCATTTCGTACACAT 59.302 36.000 0.85 0.00 34.71 3.21
5818 19233 5.049167 AGTTTCGTAACCATTTCGTACACA 58.951 37.500 0.85 0.00 34.71 3.72
5819 19234 5.580911 AGTTTCGTAACCATTTCGTACAC 57.419 39.130 0.85 0.00 34.71 2.90
5821 19236 4.863437 CGAGTTTCGTAACCATTTCGTAC 58.137 43.478 0.85 0.00 34.72 3.67
5856 19271 8.836413 CCAGACTTCAAAATACTTGTCTACAAA 58.164 33.333 0.00 0.00 35.15 2.83
5857 19272 7.990886 ACCAGACTTCAAAATACTTGTCTACAA 59.009 33.333 0.00 0.00 34.03 2.41
5858 19273 7.441157 CACCAGACTTCAAAATACTTGTCTACA 59.559 37.037 0.00 0.00 34.03 2.74
5859 19274 7.441458 ACACCAGACTTCAAAATACTTGTCTAC 59.559 37.037 0.00 0.00 34.03 2.59
5860 19275 7.506114 ACACCAGACTTCAAAATACTTGTCTA 58.494 34.615 0.00 0.00 34.03 2.59
5861 19276 6.357367 ACACCAGACTTCAAAATACTTGTCT 58.643 36.000 0.00 0.00 35.48 3.41
5862 19277 6.483640 AGACACCAGACTTCAAAATACTTGTC 59.516 38.462 0.00 0.00 0.00 3.18
5863 19278 6.357367 AGACACCAGACTTCAAAATACTTGT 58.643 36.000 0.00 0.00 0.00 3.16
5864 19279 6.867662 AGACACCAGACTTCAAAATACTTG 57.132 37.500 0.00 0.00 0.00 3.16
5865 19280 7.657761 CAGTAGACACCAGACTTCAAAATACTT 59.342 37.037 0.00 0.00 0.00 2.24
5866 19281 7.155328 CAGTAGACACCAGACTTCAAAATACT 58.845 38.462 0.00 0.00 0.00 2.12
5867 19282 6.369065 CCAGTAGACACCAGACTTCAAAATAC 59.631 42.308 0.00 0.00 0.00 1.89
5868 19283 6.042781 ACCAGTAGACACCAGACTTCAAAATA 59.957 38.462 0.00 0.00 0.00 1.40
5883 19298 9.226606 CCTTGATAATGTTTTTACCAGTAGACA 57.773 33.333 0.00 0.00 0.00 3.41
5885 19300 9.667107 CTCCTTGATAATGTTTTTACCAGTAGA 57.333 33.333 0.00 0.00 0.00 2.59
5891 19308 6.405842 CCCTGCTCCTTGATAATGTTTTTACC 60.406 42.308 0.00 0.00 0.00 2.85
5895 19312 3.448660 GCCCTGCTCCTTGATAATGTTTT 59.551 43.478 0.00 0.00 0.00 2.43
5912 19329 2.621526 ACAAACTTTAAACGGAGCCCTG 59.378 45.455 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.