Multiple sequence alignment - TraesCS1D01G412700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G412700 chr1D 100.000 6817 0 0 1 6817 473861638 473868454 0.000000e+00 12589.0
1 TraesCS1D01G412700 chr1D 91.400 500 42 1 1069 1568 451140729 451140231 0.000000e+00 684.0
2 TraesCS1D01G412700 chr1D 92.908 141 10 0 1424 1564 451243881 451243741 8.960000e-49 206.0
3 TraesCS1D01G412700 chr1D 86.275 102 10 4 4099 4198 100459076 100458977 2.600000e-19 108.0
4 TraesCS1D01G412700 chr1B 92.546 5849 235 69 441 6212 658914525 658920249 0.000000e+00 8200.0
5 TraesCS1D01G412700 chr1B 87.352 506 51 4 1072 1568 619529331 619528830 9.920000e-158 568.0
6 TraesCS1D01G412700 chr1B 89.503 362 19 9 6258 6601 658920556 658920916 2.260000e-119 440.0
7 TraesCS1D01G412700 chr1B 87.968 374 35 6 443 812 637285969 637286336 3.780000e-117 433.0
8 TraesCS1D01G412700 chr1B 84.491 432 67 0 1119 1550 619535631 619535200 1.760000e-115 427.0
9 TraesCS1D01G412700 chr1B 94.776 268 14 0 1 268 658914083 658914350 1.060000e-112 418.0
10 TraesCS1D01G412700 chr1B 82.533 229 26 5 1340 1568 619544271 619544057 9.030000e-44 189.0
11 TraesCS1D01G412700 chr1A 91.799 5036 210 60 1652 6601 568109100 568114018 0.000000e+00 6824.0
12 TraesCS1D01G412700 chr1A 89.782 1145 62 34 440 1568 568107959 568109064 0.000000e+00 1415.0
13 TraesCS1D01G412700 chr1A 91.200 500 43 1 1069 1568 545896726 545896228 0.000000e+00 678.0
14 TraesCS1D01G412700 chr1A 89.220 436 41 4 1 432 568107487 568107920 2.160000e-149 540.0
15 TraesCS1D01G412700 chr1A 88.732 213 23 1 6600 6811 31531121 31530909 6.780000e-65 259.0
16 TraesCS1D01G412700 chr1A 73.881 268 43 15 6297 6551 568385507 568385760 1.580000e-11 82.4
17 TraesCS1D01G412700 chr4B 88.418 354 33 4 443 794 11349515 11349862 2.940000e-113 420.0
18 TraesCS1D01G412700 chr4B 82.000 400 61 10 2684 3077 80005789 80006183 5.100000e-86 329.0
19 TraesCS1D01G412700 chr4B 81.154 260 37 11 2684 2936 37563543 37563797 1.500000e-46 198.0
20 TraesCS1D01G412700 chr4B 87.629 97 11 1 4099 4194 479155525 479155621 2.010000e-20 111.0
21 TraesCS1D01G412700 chr3A 82.439 410 59 12 2684 3085 743488919 743488515 5.060000e-91 346.0
22 TraesCS1D01G412700 chr5D 82.206 399 59 11 2684 3075 385111294 385110901 3.940000e-87 333.0
23 TraesCS1D01G412700 chr5D 90.000 220 17 5 6598 6817 440380337 440380551 5.210000e-71 279.0
24 TraesCS1D01G412700 chr5D 88.073 218 23 3 6593 6808 291915793 291916009 8.770000e-64 255.0
25 TraesCS1D01G412700 chr6B 81.658 398 55 10 2684 3077 151810382 151810765 1.430000e-81 315.0
26 TraesCS1D01G412700 chr6B 87.629 97 11 1 4099 4194 507471564 507471660 2.010000e-20 111.0
27 TraesCS1D01G412700 chr5B 88.258 264 30 1 1213 1476 710757632 710757894 1.430000e-81 315.0
28 TraesCS1D01G412700 chr5B 87.879 264 30 2 1213 1476 673112435 673112696 6.640000e-80 309.0
29 TraesCS1D01G412700 chr6D 88.845 251 28 0 1093 1343 318999232 318999482 6.640000e-80 309.0
30 TraesCS1D01G412700 chr6D 89.524 210 21 1 6600 6809 131937395 131937603 1.460000e-66 265.0
31 TraesCS1D01G412700 chr6D 87.554 233 23 5 6579 6808 352843641 352843870 1.460000e-66 265.0
32 TraesCS1D01G412700 chr6D 83.186 113 15 4 4099 4210 452542041 452542150 4.350000e-17 100.0
33 TraesCS1D01G412700 chr2D 90.254 236 20 3 6583 6817 197912462 197912229 8.590000e-79 305.0
34 TraesCS1D01G412700 chr3D 89.189 222 24 0 6596 6817 126221752 126221973 1.870000e-70 278.0
35 TraesCS1D01G412700 chr3D 88.546 227 23 2 6591 6817 43539869 43540092 8.710000e-69 272.0
36 TraesCS1D01G412700 chr4A 88.679 212 22 2 6600 6811 96820047 96819838 2.440000e-64 257.0
37 TraesCS1D01G412700 chr4A 89.157 83 8 1 3649 3731 274860056 274860137 1.210000e-17 102.0
38 TraesCS1D01G412700 chr7B 91.304 92 7 1 4099 4189 357651575 357651484 2.580000e-24 124.0
39 TraesCS1D01G412700 chr2A 90.426 94 8 1 4102 4194 205917688 205917595 9.280000e-24 122.0
40 TraesCS1D01G412700 chr6A 84.906 106 13 3 4099 4201 502244243 502244348 3.360000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G412700 chr1D 473861638 473868454 6816 False 12589.000000 12589 100.000 1 6817 1 chr1D.!!$F1 6816
1 TraesCS1D01G412700 chr1B 658914083 658920916 6833 False 3019.333333 8200 92.275 1 6601 3 chr1B.!!$F2 6600
2 TraesCS1D01G412700 chr1B 619528830 619529331 501 True 568.000000 568 87.352 1072 1568 1 chr1B.!!$R1 496
3 TraesCS1D01G412700 chr1A 568107487 568114018 6531 False 2926.333333 6824 90.267 1 6601 3 chr1A.!!$F2 6600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 955 0.322187 ATAATCGGCGGCCCATAACC 60.322 55.000 14.55 0.0 0.0 2.85 F
1664 1742 0.036732 TGATGCTGTTCCCCTGTGTC 59.963 55.000 0.00 0.0 0.0 3.67 F
2609 2713 1.267806 CAGCCGCAGTGTGATTTCTTT 59.732 47.619 4.93 0.0 0.0 2.52 F
2613 2717 4.037446 AGCCGCAGTGTGATTTCTTTAAAA 59.963 37.500 4.93 0.0 0.0 1.52 F
3819 3928 1.001378 GCGAGCACATGTGGAAAAGTT 60.001 47.619 26.55 0.0 0.0 2.66 F
4965 5098 0.107508 ATGATGACACCAAGGCCGAG 60.108 55.000 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1906 0.104120 TGCGTCAACACACTACTGCT 59.896 50.000 0.00 0.00 0.00 4.24 R
2651 2755 0.173708 GGCTAGCTGCGTACTTGACT 59.826 55.000 15.72 0.00 44.05 3.41 R
3514 3623 4.201910 GCAGCAAACGAGGCTTTTCATATA 60.202 41.667 0.00 0.00 40.23 0.86 R
4022 4132 6.364568 TTTCCTCATCAGAGTCTTCATGAA 57.635 37.500 8.12 8.12 40.40 2.57 R
5584 5720 0.110823 CGCCAAACTACTCAACGTGC 60.111 55.000 0.00 0.00 0.00 5.34 R
6767 7199 0.028902 AAGTTTCGCCGAGTTTGTGC 59.971 50.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.831736 ACCTGGTATTCTGGTTCCGAG 59.168 52.381 0.00 0.00 43.99 4.63
44 45 1.611977 TCTGGTTCCGAGCATATACCG 59.388 52.381 0.00 0.00 31.96 4.02
47 48 1.067776 GGTTCCGAGCATATACCGAGG 60.068 57.143 0.00 0.00 0.00 4.63
116 117 4.006989 TCTGACCCACGATTTGGTTTATG 58.993 43.478 0.00 0.00 45.25 1.90
155 156 2.561037 CGGTTTCCCCAACACAGCC 61.561 63.158 0.00 0.00 37.07 4.85
186 187 0.601311 GGAGACACACAGCACAGACC 60.601 60.000 0.00 0.00 0.00 3.85
268 269 2.615912 CTGAATTCTCCCGGAATCTTGC 59.384 50.000 0.73 0.00 43.17 4.01
301 303 1.466186 AGGAGGCACTTTTCCCCCT 60.466 57.895 0.00 0.00 41.55 4.79
303 305 1.501654 GGAGGCACTTTTCCCCCTCT 61.502 60.000 5.61 0.00 41.55 3.69
304 306 0.405973 GAGGCACTTTTCCCCCTCTT 59.594 55.000 0.00 0.00 41.55 2.85
305 307 1.633945 GAGGCACTTTTCCCCCTCTTA 59.366 52.381 0.00 0.00 41.55 2.10
306 308 2.041216 GAGGCACTTTTCCCCCTCTTAA 59.959 50.000 0.00 0.00 41.55 1.85
307 309 2.654896 AGGCACTTTTCCCCCTCTTAAT 59.345 45.455 0.00 0.00 27.25 1.40
308 310 3.077543 AGGCACTTTTCCCCCTCTTAATT 59.922 43.478 0.00 0.00 27.25 1.40
309 311 3.195610 GGCACTTTTCCCCCTCTTAATTG 59.804 47.826 0.00 0.00 0.00 2.32
317 319 7.712204 TTTCCCCCTCTTAATTGTCATTTAC 57.288 36.000 0.00 0.00 0.00 2.01
348 350 5.927689 TGCACAATGACAAATTCCTGAATTC 59.072 36.000 5.64 0.00 39.88 2.17
402 405 6.572167 TGATGCATCATGAACACTAAACAA 57.428 33.333 25.42 0.00 0.00 2.83
403 406 6.614160 TGATGCATCATGAACACTAAACAAG 58.386 36.000 25.42 0.00 0.00 3.16
424 427 7.917003 ACAAGGAAATAATATTTTTGGCCAGT 58.083 30.769 5.11 0.00 0.00 4.00
432 435 2.356665 TTTTTGGCCAGTGAGTGCTA 57.643 45.000 5.11 0.00 0.00 3.49
434 437 1.896220 TTTGGCCAGTGAGTGCTAAG 58.104 50.000 5.11 0.00 29.45 2.18
436 439 1.639722 TGGCCAGTGAGTGCTAAGTA 58.360 50.000 0.00 0.00 0.00 2.24
437 440 1.275291 TGGCCAGTGAGTGCTAAGTAC 59.725 52.381 0.00 0.00 0.00 2.73
438 441 1.550976 GGCCAGTGAGTGCTAAGTACT 59.449 52.381 0.00 0.00 0.00 2.73
573 611 4.933064 CCGCGGCCTCGTCATCTC 62.933 72.222 14.67 0.00 38.89 2.75
574 612 4.933064 CGCGGCCTCGTCATCTCC 62.933 72.222 7.05 0.00 38.89 3.71
575 613 3.532155 GCGGCCTCGTCATCTCCT 61.532 66.667 0.00 0.00 38.89 3.69
576 614 2.725008 CGGCCTCGTCATCTCCTC 59.275 66.667 0.00 0.00 0.00 3.71
577 615 2.851071 CGGCCTCGTCATCTCCTCC 61.851 68.421 0.00 0.00 0.00 4.30
578 616 2.503382 GGCCTCGTCATCTCCTCCC 61.503 68.421 0.00 0.00 0.00 4.30
623 661 0.739462 TTCAACCACCGCATAGCTCG 60.739 55.000 0.00 0.00 0.00 5.03
731 772 2.390777 AATATACCGGCGGGGGAGGA 62.391 60.000 31.78 9.29 41.60 3.71
798 842 0.459934 CAGAGCAGAGGAAGCGAAGG 60.460 60.000 0.00 0.00 37.01 3.46
801 845 2.586792 CAGAGGAAGCGAAGGGGG 59.413 66.667 0.00 0.00 0.00 5.40
835 880 6.418101 CAAATGGGATAAGAGTGGAAGAGAA 58.582 40.000 0.00 0.00 0.00 2.87
848 893 3.067833 GGAAGAGAAGACGACCCAAAAG 58.932 50.000 0.00 0.00 0.00 2.27
859 904 7.297936 AGACGACCCAAAAGGATTTAATTTT 57.702 32.000 0.00 0.00 37.28 1.82
861 906 7.014808 AGACGACCCAAAAGGATTTAATTTTCA 59.985 33.333 0.00 0.00 37.28 2.69
862 907 7.676004 ACGACCCAAAAGGATTTAATTTTCAT 58.324 30.769 0.00 0.00 37.28 2.57
896 941 4.198087 GCCCAGGGCCCAATAATC 57.802 61.111 27.56 3.56 44.06 1.75
898 943 1.228552 CCCAGGGCCCAATAATCGG 60.229 63.158 27.56 11.82 0.00 4.18
900 945 2.113139 AGGGCCCAATAATCGGCG 59.887 61.111 27.56 0.00 46.73 6.46
901 946 2.983592 GGGCCCAATAATCGGCGG 60.984 66.667 19.95 0.00 46.73 6.13
903 948 3.670377 GCCCAATAATCGGCGGCC 61.670 66.667 9.54 9.54 34.94 6.13
905 950 2.203280 CCAATAATCGGCGGCCCA 60.203 61.111 14.55 0.00 0.00 5.36
909 954 1.199097 CAATAATCGGCGGCCCATAAC 59.801 52.381 14.55 0.00 0.00 1.89
910 955 0.322187 ATAATCGGCGGCCCATAACC 60.322 55.000 14.55 0.00 0.00 2.85
912 957 3.767630 ATCGGCGGCCCATAACCAC 62.768 63.158 14.55 0.00 0.00 4.16
913 958 4.787286 CGGCGGCCCATAACCACA 62.787 66.667 14.55 0.00 0.00 4.17
1037 1094 3.115017 TAGGCTCCATCCCCTCCCC 62.115 68.421 0.00 0.00 32.65 4.81
1058 1117 0.041833 CTCCTCCTCCTCCTCCACAA 59.958 60.000 0.00 0.00 0.00 3.33
1574 1652 4.588899 CCTTCATCACCAAGGTATCAACA 58.411 43.478 0.00 0.00 36.40 3.33
1576 1654 4.632327 TCATCACCAAGGTATCAACACA 57.368 40.909 0.00 0.00 0.00 3.72
1595 1673 1.375908 GTCTGCCACCGAATGCTGA 60.376 57.895 0.00 0.00 33.76 4.26
1611 1689 1.361668 CTGACCCGCTGAATCCGTTG 61.362 60.000 0.00 0.00 0.00 4.10
1644 1722 2.852143 GCCATCGACTGCAAATGATTCG 60.852 50.000 3.27 0.00 0.00 3.34
1650 1728 3.103738 GACTGCAAATGATTCGTGATGC 58.896 45.455 9.03 9.03 0.00 3.91
1664 1742 0.036732 TGATGCTGTTCCCCTGTGTC 59.963 55.000 0.00 0.00 0.00 3.67
1734 1812 3.263425 TCTTCAGGTCCCAGGATTACAAC 59.737 47.826 0.00 0.00 0.00 3.32
1755 1833 6.649141 ACAACGCTATCATGTTCTGTCTTAAA 59.351 34.615 0.00 0.00 0.00 1.52
1789 1867 2.287009 GGACGCAGGTTTTCTTCAAGTG 60.287 50.000 0.00 0.00 0.00 3.16
1807 1895 8.439993 TTCAAGTGCTTGTGTTGTTACTTATA 57.560 30.769 11.17 0.00 41.16 0.98
1809 1897 8.503196 TCAAGTGCTTGTGTTGTTACTTATATG 58.497 33.333 11.17 0.00 41.16 1.78
1811 1899 9.496873 AAGTGCTTGTGTTGTTACTTATATGTA 57.503 29.630 0.00 0.00 0.00 2.29
1937 2025 7.011389 TCCGCTGAAATTTACATTATCTGTCTG 59.989 37.037 0.00 0.00 39.39 3.51
2024 2112 5.394663 CGAACCTGAGAAGAAGATGGTATGT 60.395 44.000 0.00 0.00 0.00 2.29
2025 2113 5.606348 ACCTGAGAAGAAGATGGTATGTC 57.394 43.478 0.00 0.00 0.00 3.06
2046 2134 5.235616 TGTCGAAACATTTGTCAGAGTTACC 59.764 40.000 0.00 0.00 0.00 2.85
2048 2136 4.755123 CGAAACATTTGTCAGAGTTACCCT 59.245 41.667 0.00 0.00 0.00 4.34
2113 2217 3.708013 GCCTAGGGATGTACTTGGC 57.292 57.895 11.72 2.45 46.38 4.52
2223 2327 3.131396 ACTGCTTTTCTACCACTCAACG 58.869 45.455 0.00 0.00 0.00 4.10
2497 2601 5.108187 ACTTATGTTCAGATCTGGCATGT 57.892 39.130 28.17 20.69 32.33 3.21
2509 2613 2.376518 TCTGGCATGTCTTCTCCCTTTT 59.623 45.455 0.00 0.00 0.00 2.27
2530 2634 6.439675 TTTTCACACTAAGGGTAACAACAC 57.560 37.500 0.00 0.00 39.74 3.32
2587 2691 5.557576 TTCTCTGCATATCTTGGTAGCAT 57.442 39.130 0.00 0.00 34.35 3.79
2609 2713 1.267806 CAGCCGCAGTGTGATTTCTTT 59.732 47.619 4.93 0.00 0.00 2.52
2613 2717 4.037446 AGCCGCAGTGTGATTTCTTTAAAA 59.963 37.500 4.93 0.00 0.00 1.52
2657 2761 5.296780 TGCCAGTTCTGTTTTTAGAGTCAAG 59.703 40.000 0.00 0.00 0.00 3.02
2660 2764 7.518529 GCCAGTTCTGTTTTTAGAGTCAAGTAC 60.519 40.741 0.00 0.00 0.00 2.73
2769 2873 4.894784 TCTGAACATCTGGTCCTTTGTAC 58.105 43.478 0.00 0.00 0.00 2.90
2786 2890 9.016438 TCCTTTGTACTGTACTTTCAAACTTTT 57.984 29.630 17.98 0.00 0.00 2.27
3260 3364 7.286546 AGCATGTCTATTACTATCAGTGTGTCT 59.713 37.037 0.00 0.00 0.00 3.41
3514 3623 8.342634 GTCGTGCAAAGGTATTTACATTATGAT 58.657 33.333 0.00 0.00 29.18 2.45
3696 3805 4.724399 TCAAGGTATCCTGCTGTTTTTGA 58.276 39.130 0.00 0.00 32.13 2.69
3701 3810 6.012745 AGGTATCCTGCTGTTTTTGAATTCT 58.987 36.000 7.05 0.00 29.57 2.40
3819 3928 1.001378 GCGAGCACATGTGGAAAAGTT 60.001 47.619 26.55 0.00 0.00 2.66
4022 4132 6.767456 ACAGTGAGAATGAAGAGACTCAAAT 58.233 36.000 5.02 0.00 40.30 2.32
4292 4421 7.792374 TTTAATCAGGTATGATGCTCAACTC 57.208 36.000 0.00 0.00 45.67 3.01
4420 4549 8.596781 ACAGATCTGTTAGAGGTAATAACTGT 57.403 34.615 22.89 0.00 41.83 3.55
4448 4577 3.750371 TCCACATGAATTTTGTCCTCGT 58.250 40.909 0.00 0.00 0.00 4.18
4449 4578 3.501828 TCCACATGAATTTTGTCCTCGTG 59.498 43.478 0.00 0.00 33.24 4.35
4493 4623 5.815581 ACAATAGCCAATGGACTCAACTTA 58.184 37.500 2.05 0.00 0.00 2.24
4683 4813 0.389817 TCGGTCAGGATCTGTTTGCG 60.390 55.000 0.00 0.00 32.61 4.85
4742 4872 1.406069 GGATGAAAGAGAGAAGCCGCA 60.406 52.381 0.00 0.00 0.00 5.69
4758 4888 7.099120 AGAAGCCGCATAAGAATTTGAAAAAT 58.901 30.769 0.00 0.00 0.00 1.82
4787 4917 4.509302 GGATTCAGGAAAGAAGGAAACCCT 60.509 45.833 0.00 0.00 34.97 4.34
4809 4939 1.354040 CTAAAGCACAGCTGGACTCG 58.646 55.000 19.93 1.81 39.62 4.18
4902 5032 0.967380 TCCGAGCTGCAGATGACTCA 60.967 55.000 20.43 0.00 0.00 3.41
4936 5069 2.540931 GACGAGTCAGACGATCTAGACC 59.459 54.545 0.00 0.00 30.28 3.85
4965 5098 0.107508 ATGATGACACCAAGGCCGAG 60.108 55.000 0.00 0.00 0.00 4.63
5052 5185 6.147164 CCTACAACAAGTACATGTTTGACGAT 59.853 38.462 13.52 0.00 41.44 3.73
5073 5206 2.991540 GGCCTGCCCAAGTGGTTC 60.992 66.667 0.00 0.00 36.04 3.62
5091 5224 2.107292 CGCCGAGGACGAGAAGAGA 61.107 63.158 0.00 0.00 42.66 3.10
5280 5413 0.179100 CGGACCAGAGCGACATCAAT 60.179 55.000 0.00 0.00 0.00 2.57
5406 5539 2.035626 GGCAAGGGCAAGGTGCTA 59.964 61.111 0.00 0.00 44.28 3.49
5469 5602 4.048470 AAGAAGGGCGGGAAGGGC 62.048 66.667 0.00 0.00 0.00 5.19
5471 5604 4.360405 GAAGGGCGGGAAGGGCAA 62.360 66.667 0.00 0.00 0.00 4.52
5472 5605 3.879180 GAAGGGCGGGAAGGGCAAA 62.879 63.158 0.00 0.00 0.00 3.68
5473 5606 3.886550 AAGGGCGGGAAGGGCAAAG 62.887 63.158 0.00 0.00 0.00 2.77
5601 5737 0.872388 GGGCACGTTGAGTAGTTTGG 59.128 55.000 0.00 0.00 0.00 3.28
5627 5763 0.592148 GCTTATGGATGAGCAGCTGC 59.408 55.000 31.53 31.53 39.03 5.25
5721 5857 5.616204 CGGGTAGCTAAGCTGTTTTTGTTAC 60.616 44.000 0.00 0.00 40.10 2.50
5780 5920 7.539712 TCAGTCTGTCAGAAAAGTTTTGTAG 57.460 36.000 5.36 0.00 0.00 2.74
5794 5934 7.500720 AAGTTTTGTAGGTTACGCTTGTATT 57.499 32.000 0.00 0.00 0.00 1.89
5802 5942 4.098349 AGGTTACGCTTGTATTGGACGATA 59.902 41.667 0.00 0.00 0.00 2.92
5880 6021 5.930569 ACGAACTTACCTTAAACTTGCTAGG 59.069 40.000 0.00 0.00 0.00 3.02
5938 6081 2.035632 GCTAGGACACATGGAGCTACT 58.964 52.381 0.00 0.00 0.00 2.57
5939 6082 3.117474 AGCTAGGACACATGGAGCTACTA 60.117 47.826 0.00 0.00 41.60 1.82
5940 6083 3.004944 GCTAGGACACATGGAGCTACTAC 59.995 52.174 0.00 0.00 0.00 2.73
5941 6084 3.101643 AGGACACATGGAGCTACTACA 57.898 47.619 0.00 0.00 0.00 2.74
5943 6086 4.804597 AGGACACATGGAGCTACTACATA 58.195 43.478 0.00 0.00 31.81 2.29
5944 6087 5.398236 AGGACACATGGAGCTACTACATAT 58.602 41.667 0.00 0.00 31.81 1.78
5945 6088 5.841237 AGGACACATGGAGCTACTACATATT 59.159 40.000 0.00 0.00 31.81 1.28
5946 6089 6.327626 AGGACACATGGAGCTACTACATATTT 59.672 38.462 0.00 0.00 31.81 1.40
5947 6090 6.425114 GGACACATGGAGCTACTACATATTTG 59.575 42.308 0.00 0.00 31.81 2.32
5948 6091 6.889198 ACACATGGAGCTACTACATATTTGT 58.111 36.000 0.00 0.00 31.81 2.83
5949 6092 8.018537 ACACATGGAGCTACTACATATTTGTA 57.981 34.615 0.00 0.00 31.81 2.41
5963 6106 9.983804 CTACATATTTGTAGCAGCAATATCATG 57.016 33.333 9.93 0.00 46.46 3.07
5964 6107 8.625786 ACATATTTGTAGCAGCAATATCATGA 57.374 30.769 0.00 0.00 33.16 3.07
5965 6108 9.070179 ACATATTTGTAGCAGCAATATCATGAA 57.930 29.630 0.00 0.00 33.16 2.57
5966 6109 9.556030 CATATTTGTAGCAGCAATATCATGAAG 57.444 33.333 0.00 0.00 0.00 3.02
5967 6110 7.812690 ATTTGTAGCAGCAATATCATGAAGA 57.187 32.000 0.00 0.00 0.00 2.87
5968 6111 7.628769 TTTGTAGCAGCAATATCATGAAGAA 57.371 32.000 0.00 0.00 0.00 2.52
5969 6112 7.628769 TTGTAGCAGCAATATCATGAAGAAA 57.371 32.000 0.00 0.00 0.00 2.52
5970 6113 7.628769 TGTAGCAGCAATATCATGAAGAAAA 57.371 32.000 0.00 0.00 0.00 2.29
5971 6114 7.475015 TGTAGCAGCAATATCATGAAGAAAAC 58.525 34.615 0.00 0.00 0.00 2.43
5972 6115 6.519679 AGCAGCAATATCATGAAGAAAACA 57.480 33.333 0.00 0.00 0.00 2.83
6051 6199 2.562912 CGCACGTACGTACCCTGT 59.437 61.111 22.34 9.34 0.00 4.00
6052 6200 1.798725 CGCACGTACGTACCCTGTG 60.799 63.158 22.34 20.46 0.00 3.66
6053 6201 1.580942 GCACGTACGTACCCTGTGA 59.419 57.895 26.38 0.00 32.39 3.58
6054 6202 0.039256 GCACGTACGTACCCTGTGAA 60.039 55.000 26.38 0.00 32.39 3.18
6055 6203 1.973138 CACGTACGTACCCTGTGAAG 58.027 55.000 22.34 8.44 32.39 3.02
6068 6216 2.039613 CCTGTGAAGAGGAGAAAGCCTT 59.960 50.000 0.00 0.00 38.73 4.35
6069 6217 3.497584 CCTGTGAAGAGGAGAAAGCCTTT 60.498 47.826 0.00 0.00 38.73 3.11
6070 6218 3.480470 TGTGAAGAGGAGAAAGCCTTTG 58.520 45.455 0.00 0.00 38.73 2.77
6071 6219 2.816672 GTGAAGAGGAGAAAGCCTTTGG 59.183 50.000 0.00 0.00 38.73 3.28
6072 6220 2.224867 TGAAGAGGAGAAAGCCTTTGGG 60.225 50.000 0.00 0.00 38.73 4.12
6073 6221 0.701147 AGAGGAGAAAGCCTTTGGGG 59.299 55.000 0.00 0.00 38.73 4.96
6179 6332 0.398664 ATTCCGATTCCCGTCTCCCT 60.399 55.000 0.00 0.00 36.31 4.20
6180 6333 1.041447 TTCCGATTCCCGTCTCCCTC 61.041 60.000 0.00 0.00 36.31 4.30
6191 6345 1.594331 GTCTCCCTCGCAACTTGTTT 58.406 50.000 0.00 0.00 0.00 2.83
6192 6346 1.947456 GTCTCCCTCGCAACTTGTTTT 59.053 47.619 0.00 0.00 0.00 2.43
6220 6374 0.107017 AATCCGGATCCCACAGCTTG 60.107 55.000 19.43 0.00 0.00 4.01
6221 6375 1.987807 ATCCGGATCCCACAGCTTGG 61.988 60.000 12.38 7.69 46.47 3.61
6230 6404 2.951269 CACAGCTTGGAATCCAGCA 58.049 52.632 20.21 0.63 33.81 4.41
6232 6406 1.822990 CACAGCTTGGAATCCAGCAAT 59.177 47.619 20.21 9.12 33.81 3.56
6245 6650 1.199327 CCAGCAATCCGATGATGATGC 59.801 52.381 3.22 0.00 38.99 3.91
6298 6713 1.127213 GCAAGCATTTTGGCAACGATG 59.873 47.619 15.04 15.04 42.51 3.84
6321 6740 1.594862 GACTAATGATGGCTCACGCAC 59.405 52.381 0.00 0.00 38.10 5.34
6354 6776 2.289945 ACTCCCACTTTGCTCTGCTTAG 60.290 50.000 0.00 0.00 0.00 2.18
6356 6778 0.807496 CCACTTTGCTCTGCTTAGCC 59.193 55.000 0.29 0.00 42.05 3.93
6358 6780 1.467734 CACTTTGCTCTGCTTAGCCTG 59.532 52.381 0.29 0.00 42.05 4.85
6380 6802 7.041030 GCCTGGCTTATATACTCCTTTTCTTTC 60.041 40.741 12.43 0.00 0.00 2.62
6403 6825 4.563184 CGTGAAGATGTTTGGAGTACTAGC 59.437 45.833 0.00 0.00 0.00 3.42
6407 6829 5.700402 AGATGTTTGGAGTACTAGCCAAT 57.300 39.130 14.89 2.99 43.19 3.16
6409 6831 3.950397 TGTTTGGAGTACTAGCCAATGG 58.050 45.455 14.89 0.00 43.19 3.16
6414 6836 3.958798 TGGAGTACTAGCCAATGGTCTAC 59.041 47.826 0.00 0.00 0.00 2.59
6415 6837 4.216708 GGAGTACTAGCCAATGGTCTACT 58.783 47.826 0.00 0.89 0.00 2.57
6445 6868 4.259356 TCAAGCCTCAACATCAGATGAAG 58.741 43.478 17.81 10.52 0.00 3.02
6450 6873 4.789807 CCTCAACATCAGATGAAGGGATT 58.210 43.478 17.81 0.00 0.00 3.01
6451 6874 4.579340 CCTCAACATCAGATGAAGGGATTG 59.421 45.833 17.81 9.69 0.00 2.67
6558 6985 4.046489 TGAGATGCCCCCTCTCTTATCTAT 59.954 45.833 2.39 0.00 39.90 1.98
6603 7035 3.743396 CACTCTGTGGTCAAACTAAGAGC 59.257 47.826 0.00 0.00 35.62 4.09
6604 7036 3.388024 ACTCTGTGGTCAAACTAAGAGCA 59.612 43.478 0.00 0.00 40.79 4.26
6605 7037 4.040952 ACTCTGTGGTCAAACTAAGAGCAT 59.959 41.667 0.00 0.00 44.22 3.79
6606 7038 4.569943 TCTGTGGTCAAACTAAGAGCATC 58.430 43.478 0.00 0.00 44.22 3.91
6617 7049 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
6618 7050 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
6619 7051 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
6628 7060 3.431725 GCCGTTCGGCCTTCAAGG 61.432 66.667 23.38 0.00 44.99 3.61
6629 7061 2.746277 CCGTTCGGCCTTCAAGGG 60.746 66.667 5.33 2.12 35.37 3.95
6637 7069 2.671619 CCTTCAAGGGCGCCGAAA 60.672 61.111 22.54 10.65 0.00 3.46
6638 7070 2.265182 CCTTCAAGGGCGCCGAAAA 61.265 57.895 22.54 11.02 0.00 2.29
6639 7071 1.657556 CTTCAAGGGCGCCGAAAAA 59.342 52.632 22.54 11.40 0.00 1.94
6640 7072 0.387239 CTTCAAGGGCGCCGAAAAAG 60.387 55.000 22.54 17.07 0.00 2.27
6641 7073 0.820074 TTCAAGGGCGCCGAAAAAGA 60.820 50.000 22.54 9.42 0.00 2.52
6642 7074 1.210155 CAAGGGCGCCGAAAAAGAG 59.790 57.895 22.54 0.00 0.00 2.85
6643 7075 2.626780 AAGGGCGCCGAAAAAGAGC 61.627 57.895 22.54 2.36 0.00 4.09
6644 7076 4.116328 GGGCGCCGAAAAAGAGCC 62.116 66.667 22.54 0.00 46.51 4.70
6645 7077 4.460873 GGCGCCGAAAAAGAGCCG 62.461 66.667 12.58 0.00 38.28 5.52
6646 7078 3.723348 GCGCCGAAAAAGAGCCGT 61.723 61.111 0.00 0.00 0.00 5.68
6647 7079 2.474712 CGCCGAAAAAGAGCCGTC 59.525 61.111 0.00 0.00 0.00 4.79
6648 7080 2.027625 CGCCGAAAAAGAGCCGTCT 61.028 57.895 0.00 0.00 32.81 4.18
6649 7081 1.497722 GCCGAAAAAGAGCCGTCTG 59.502 57.895 0.00 0.00 31.37 3.51
6650 7082 1.228657 GCCGAAAAAGAGCCGTCTGT 61.229 55.000 0.00 0.00 31.37 3.41
6651 7083 0.512952 CCGAAAAAGAGCCGTCTGTG 59.487 55.000 0.00 0.00 31.37 3.66
6652 7084 0.512952 CGAAAAAGAGCCGTCTGTGG 59.487 55.000 0.00 0.00 31.37 4.17
6653 7085 0.875059 GAAAAAGAGCCGTCTGTGGG 59.125 55.000 0.00 0.00 31.37 4.61
6661 7093 4.988598 CGTCTGTGGGCAAGCCGT 62.989 66.667 4.80 0.00 36.85 5.68
6662 7094 3.050275 GTCTGTGGGCAAGCCGTC 61.050 66.667 4.80 1.30 36.85 4.79
6663 7095 4.680237 TCTGTGGGCAAGCCGTCG 62.680 66.667 4.80 0.00 36.85 5.12
6673 7105 2.107141 AGCCGTCGCTAGATTGGC 59.893 61.111 0.00 0.26 46.08 4.52
6674 7106 2.967615 GCCGTCGCTAGATTGGCC 60.968 66.667 0.00 0.00 41.84 5.36
6675 7107 2.280186 CCGTCGCTAGATTGGCCC 60.280 66.667 0.00 0.00 0.00 5.80
6676 7108 2.280186 CGTCGCTAGATTGGCCCC 60.280 66.667 0.00 0.00 0.00 5.80
6677 7109 2.797278 CGTCGCTAGATTGGCCCCT 61.797 63.158 0.00 0.00 0.00 4.79
6678 7110 1.461091 CGTCGCTAGATTGGCCCCTA 61.461 60.000 0.00 0.00 0.00 3.53
6679 7111 0.756903 GTCGCTAGATTGGCCCCTAA 59.243 55.000 0.00 0.00 0.00 2.69
6680 7112 1.048601 TCGCTAGATTGGCCCCTAAG 58.951 55.000 0.00 0.00 0.00 2.18
6681 7113 0.035458 CGCTAGATTGGCCCCTAAGG 59.965 60.000 0.00 0.00 39.47 2.69
6698 7130 2.760385 GGCGACCTAGCTCCCAGT 60.760 66.667 0.00 0.00 37.29 4.00
6699 7131 2.787567 GGCGACCTAGCTCCCAGTC 61.788 68.421 0.00 0.00 37.29 3.51
6700 7132 3.111939 CGACCTAGCTCCCAGTCG 58.888 66.667 11.65 11.65 45.07 4.18
6701 7133 1.749638 CGACCTAGCTCCCAGTCGT 60.750 63.158 15.56 0.00 45.25 4.34
6702 7134 1.716826 CGACCTAGCTCCCAGTCGTC 61.717 65.000 15.56 1.96 45.25 4.20
6703 7135 1.716826 GACCTAGCTCCCAGTCGTCG 61.717 65.000 0.00 0.00 0.00 5.12
6704 7136 2.482333 CCTAGCTCCCAGTCGTCGG 61.482 68.421 0.00 0.00 0.00 4.79
6705 7137 3.127352 CTAGCTCCCAGTCGTCGGC 62.127 68.421 0.00 0.00 0.00 5.54
6711 7143 4.742201 CCAGTCGTCGGCCCACAG 62.742 72.222 0.16 0.00 0.00 3.66
6712 7144 4.742201 CAGTCGTCGGCCCACAGG 62.742 72.222 0.16 0.00 0.00 4.00
6714 7146 4.736896 GTCGTCGGCCCACAGGTC 62.737 72.222 0.16 0.00 34.57 3.85
6743 7175 3.935196 GGCGACGTCCGTACAAAA 58.065 55.556 10.58 0.00 41.15 2.44
6744 7176 2.448477 GGCGACGTCCGTACAAAAT 58.552 52.632 10.58 0.00 41.15 1.82
6745 7177 1.627879 GGCGACGTCCGTACAAAATA 58.372 50.000 10.58 0.00 41.15 1.40
6746 7178 2.195922 GGCGACGTCCGTACAAAATAT 58.804 47.619 10.58 0.00 41.15 1.28
6747 7179 3.371168 GGCGACGTCCGTACAAAATATA 58.629 45.455 10.58 0.00 41.15 0.86
6748 7180 3.983344 GGCGACGTCCGTACAAAATATAT 59.017 43.478 10.58 0.00 41.15 0.86
6749 7181 4.143473 GGCGACGTCCGTACAAAATATATG 60.143 45.833 10.58 0.00 41.15 1.78
6750 7182 4.676471 GCGACGTCCGTACAAAATATATGA 59.324 41.667 10.58 0.00 41.15 2.15
6751 7183 5.173673 GCGACGTCCGTACAAAATATATGAA 59.826 40.000 10.58 0.00 41.15 2.57
6752 7184 6.291743 GCGACGTCCGTACAAAATATATGAAA 60.292 38.462 10.58 0.00 41.15 2.69
6753 7185 7.611387 CGACGTCCGTACAAAATATATGAAAA 58.389 34.615 10.58 0.00 0.00 2.29
6754 7186 7.576602 CGACGTCCGTACAAAATATATGAAAAC 59.423 37.037 10.58 0.00 0.00 2.43
6755 7187 8.483307 ACGTCCGTACAAAATATATGAAAACT 57.517 30.769 0.00 0.00 0.00 2.66
6756 7188 8.598075 ACGTCCGTACAAAATATATGAAAACTC 58.402 33.333 0.00 0.00 0.00 3.01
6757 7189 7.786118 CGTCCGTACAAAATATATGAAAACTCG 59.214 37.037 0.00 0.00 0.00 4.18
6758 7190 8.810427 GTCCGTACAAAATATATGAAAACTCGA 58.190 33.333 0.00 0.00 0.00 4.04
6759 7191 8.810427 TCCGTACAAAATATATGAAAACTCGAC 58.190 33.333 0.00 0.00 0.00 4.20
6760 7192 7.786118 CCGTACAAAATATATGAAAACTCGACG 59.214 37.037 0.00 0.00 0.00 5.12
6761 7193 8.525876 CGTACAAAATATATGAAAACTCGACGA 58.474 33.333 0.00 0.00 0.00 4.20
6768 7200 8.767944 ATATATGAAAACTCGACGATTTTTGC 57.232 30.769 24.87 17.48 27.50 3.68
6769 7201 4.280101 TGAAAACTCGACGATTTTTGCA 57.720 36.364 24.87 19.20 27.50 4.08
6770 7202 4.032355 TGAAAACTCGACGATTTTTGCAC 58.968 39.130 24.87 14.15 27.50 4.57
6771 7203 3.684103 AAACTCGACGATTTTTGCACA 57.316 38.095 7.31 0.00 0.00 4.57
6772 7204 3.684103 AACTCGACGATTTTTGCACAA 57.316 38.095 0.00 0.00 0.00 3.33
6773 7205 3.684103 ACTCGACGATTTTTGCACAAA 57.316 38.095 0.00 0.00 0.00 2.83
6774 7206 3.359654 ACTCGACGATTTTTGCACAAAC 58.640 40.909 0.00 0.00 0.00 2.93
6775 7207 3.064820 ACTCGACGATTTTTGCACAAACT 59.935 39.130 0.00 0.00 0.00 2.66
6776 7208 3.613563 TCGACGATTTTTGCACAAACTC 58.386 40.909 0.00 1.79 0.00 3.01
6777 7209 2.397154 CGACGATTTTTGCACAAACTCG 59.603 45.455 21.00 21.00 39.55 4.18
6778 7210 2.719046 GACGATTTTTGCACAAACTCGG 59.281 45.455 23.71 13.92 38.73 4.63
6779 7211 1.451651 CGATTTTTGCACAAACTCGGC 59.548 47.619 17.79 0.00 34.62 5.54
6780 7212 1.451651 GATTTTTGCACAAACTCGGCG 59.548 47.619 0.00 0.00 0.00 6.46
6781 7213 0.452184 TTTTTGCACAAACTCGGCGA 59.548 45.000 10.14 10.14 0.00 5.54
6782 7214 0.452184 TTTTGCACAAACTCGGCGAA 59.548 45.000 12.13 0.00 0.00 4.70
6783 7215 0.452184 TTTGCACAAACTCGGCGAAA 59.548 45.000 12.13 0.00 0.00 3.46
6784 7216 0.248296 TTGCACAAACTCGGCGAAAC 60.248 50.000 12.13 0.00 0.00 2.78
6785 7217 1.092921 TGCACAAACTCGGCGAAACT 61.093 50.000 12.13 0.00 0.00 2.66
6786 7218 0.028902 GCACAAACTCGGCGAAACTT 59.971 50.000 12.13 1.16 0.00 2.66
6787 7219 1.920272 GCACAAACTCGGCGAAACTTC 60.920 52.381 12.13 0.00 0.00 3.01
6788 7220 1.329292 CACAAACTCGGCGAAACTTCA 59.671 47.619 12.13 0.00 0.00 3.02
6789 7221 2.032030 CACAAACTCGGCGAAACTTCAT 60.032 45.455 12.13 0.00 0.00 2.57
6790 7222 2.616842 ACAAACTCGGCGAAACTTCATT 59.383 40.909 12.13 0.00 0.00 2.57
6791 7223 2.969443 AACTCGGCGAAACTTCATTG 57.031 45.000 12.13 0.00 0.00 2.82
6792 7224 2.163818 ACTCGGCGAAACTTCATTGA 57.836 45.000 12.13 0.00 0.00 2.57
6793 7225 2.489971 ACTCGGCGAAACTTCATTGAA 58.510 42.857 12.13 0.00 0.00 2.69
6794 7226 2.480419 ACTCGGCGAAACTTCATTGAAG 59.520 45.455 22.00 22.00 44.37 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.050703 CCGCATCCTCGGTATATGC 57.949 57.895 0.00 0.00 44.18 3.14
44 45 2.094659 CACACGTCACCGCATCCTC 61.095 63.158 0.00 0.00 37.70 3.71
47 48 1.503818 AAACCACACGTCACCGCATC 61.504 55.000 0.00 0.00 37.70 3.91
116 117 2.435059 GTCGGCAAGAGCACCCTC 60.435 66.667 0.00 0.00 44.61 4.30
140 141 0.105760 ATGTGGCTGTGTTGGGGAAA 60.106 50.000 0.00 0.00 0.00 3.13
186 187 1.545136 TGCCATGTTGTAATGCTGTGG 59.455 47.619 0.00 0.00 0.00 4.17
226 227 6.223852 TCAGAGGAAACAACTTATCTGACAC 58.776 40.000 0.00 0.00 36.07 3.67
287 289 2.597578 TTAAGAGGGGGAAAAGTGCC 57.402 50.000 0.00 0.00 33.53 5.01
301 303 8.955388 TGCAGCATAAGTAAATGACAATTAAGA 58.045 29.630 0.00 0.00 0.00 2.10
303 305 8.518702 TGTGCAGCATAAGTAAATGACAATTAA 58.481 29.630 0.00 0.00 0.00 1.40
304 306 8.049655 TGTGCAGCATAAGTAAATGACAATTA 57.950 30.769 0.00 0.00 0.00 1.40
305 307 6.923012 TGTGCAGCATAAGTAAATGACAATT 58.077 32.000 0.00 0.00 0.00 2.32
306 308 6.513806 TGTGCAGCATAAGTAAATGACAAT 57.486 33.333 0.00 0.00 0.00 2.71
307 309 5.956068 TGTGCAGCATAAGTAAATGACAA 57.044 34.783 0.00 0.00 0.00 3.18
308 310 5.956068 TTGTGCAGCATAAGTAAATGACA 57.044 34.783 0.00 0.00 0.00 3.58
309 311 6.470235 GTCATTGTGCAGCATAAGTAAATGAC 59.530 38.462 15.55 15.55 42.87 3.06
317 319 5.290158 GGAATTTGTCATTGTGCAGCATAAG 59.710 40.000 10.62 3.38 0.00 1.73
348 350 5.473504 ACCAGTAGCATTTTTGGTTCAGTAG 59.526 40.000 0.00 0.00 40.94 2.57
402 405 7.400052 ACTCACTGGCCAAAAATATTATTTCCT 59.600 33.333 7.01 0.00 0.00 3.36
403 406 7.492344 CACTCACTGGCCAAAAATATTATTTCC 59.508 37.037 7.01 0.95 0.00 3.13
412 415 1.708341 AGCACTCACTGGCCAAAAAT 58.292 45.000 7.01 0.00 0.00 1.82
414 417 2.229792 CTTAGCACTCACTGGCCAAAA 58.770 47.619 7.01 0.00 0.00 2.44
415 418 1.142870 ACTTAGCACTCACTGGCCAAA 59.857 47.619 7.01 0.00 0.00 3.28
424 427 5.561679 TCTTCTCTCAGTACTTAGCACTCA 58.438 41.667 0.00 0.00 0.00 3.41
432 435 5.083821 AGCCTTCTTCTTCTCTCAGTACTT 58.916 41.667 0.00 0.00 0.00 2.24
434 437 4.461081 TGAGCCTTCTTCTTCTCTCAGTAC 59.539 45.833 0.00 0.00 0.00 2.73
436 439 3.258123 GTGAGCCTTCTTCTTCTCTCAGT 59.742 47.826 0.00 0.00 32.08 3.41
437 440 3.368323 GGTGAGCCTTCTTCTTCTCTCAG 60.368 52.174 0.00 0.00 32.08 3.35
438 441 2.564947 GGTGAGCCTTCTTCTTCTCTCA 59.435 50.000 0.00 0.00 0.00 3.27
487 525 2.043852 GAGTCGGAGGAGCTGGGA 60.044 66.667 0.00 0.00 0.00 4.37
567 605 2.727071 GGGGAGGGGGAGGAGATGA 61.727 68.421 0.00 0.00 0.00 2.92
574 612 4.179599 GAGGAGGGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
577 615 4.825679 GTGGAGGAGGGGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
578 616 4.825679 GGTGGAGGAGGGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
623 661 4.736896 GTCGACGAGTGGGGGTGC 62.737 72.222 0.00 0.00 0.00 5.01
711 749 1.295423 CTCCCCCGCCGGTATATTG 59.705 63.158 1.90 0.00 0.00 1.90
714 752 3.510633 TCCTCCCCCGCCGGTATA 61.511 66.667 1.90 0.00 0.00 1.47
798 842 0.972471 CCATTTGCCACTTCTCCCCC 60.972 60.000 0.00 0.00 0.00 5.40
801 845 2.149973 ATCCCATTTGCCACTTCTCC 57.850 50.000 0.00 0.00 0.00 3.71
802 846 4.526970 TCTTATCCCATTTGCCACTTCTC 58.473 43.478 0.00 0.00 0.00 2.87
803 847 4.018050 ACTCTTATCCCATTTGCCACTTCT 60.018 41.667 0.00 0.00 0.00 2.85
804 848 4.096984 CACTCTTATCCCATTTGCCACTTC 59.903 45.833 0.00 0.00 0.00 3.01
805 849 4.019174 CACTCTTATCCCATTTGCCACTT 58.981 43.478 0.00 0.00 0.00 3.16
807 851 2.689983 CCACTCTTATCCCATTTGCCAC 59.310 50.000 0.00 0.00 0.00 5.01
808 852 2.580322 TCCACTCTTATCCCATTTGCCA 59.420 45.455 0.00 0.00 0.00 4.92
809 853 3.297134 TCCACTCTTATCCCATTTGCC 57.703 47.619 0.00 0.00 0.00 4.52
810 854 4.526970 TCTTCCACTCTTATCCCATTTGC 58.473 43.478 0.00 0.00 0.00 3.68
811 855 5.994250 TCTCTTCCACTCTTATCCCATTTG 58.006 41.667 0.00 0.00 0.00 2.32
812 856 6.445139 TCTTCTCTTCCACTCTTATCCCATTT 59.555 38.462 0.00 0.00 0.00 2.32
835 880 6.911250 AAATTAAATCCTTTTGGGTCGTCT 57.089 33.333 0.00 0.00 40.87 4.18
859 904 5.946972 TGGGCCGTAAAGAGAAATTAAATGA 59.053 36.000 0.00 0.00 0.00 2.57
861 906 5.359860 CCTGGGCCGTAAAGAGAAATTAAAT 59.640 40.000 0.00 0.00 0.00 1.40
862 907 4.703093 CCTGGGCCGTAAAGAGAAATTAAA 59.297 41.667 0.00 0.00 0.00 1.52
865 910 2.620627 CCCTGGGCCGTAAAGAGAAATT 60.621 50.000 0.00 0.00 0.00 1.82
866 911 1.064685 CCCTGGGCCGTAAAGAGAAAT 60.065 52.381 0.00 0.00 0.00 2.17
867 912 0.326927 CCCTGGGCCGTAAAGAGAAA 59.673 55.000 0.00 0.00 0.00 2.52
868 913 1.988015 CCCTGGGCCGTAAAGAGAA 59.012 57.895 0.00 0.00 0.00 2.87
869 914 2.666098 GCCCTGGGCCGTAAAGAGA 61.666 63.158 27.77 0.00 44.06 3.10
870 915 2.124695 GCCCTGGGCCGTAAAGAG 60.125 66.667 27.77 0.00 44.06 2.85
891 936 0.322187 GGTTATGGGCCGCCGATTAT 60.322 55.000 12.63 2.60 0.00 1.28
892 937 1.071814 GGTTATGGGCCGCCGATTA 59.928 57.895 12.63 0.02 0.00 1.75
893 938 2.203294 GGTTATGGGCCGCCGATT 60.203 61.111 12.63 0.00 0.00 3.34
894 939 3.484806 TGGTTATGGGCCGCCGAT 61.485 61.111 12.03 12.03 0.00 4.18
895 940 4.476752 GTGGTTATGGGCCGCCGA 62.477 66.667 2.55 0.00 0.00 5.54
896 941 4.787286 TGTGGTTATGGGCCGCCG 62.787 66.667 2.55 0.00 35.76 6.46
898 943 3.138128 GGTGTGGTTATGGGCCGC 61.138 66.667 0.00 0.00 37.06 6.53
900 945 0.543174 TTTGGGTGTGGTTATGGGCC 60.543 55.000 0.00 0.00 0.00 5.80
901 946 0.606096 GTTTGGGTGTGGTTATGGGC 59.394 55.000 0.00 0.00 0.00 5.36
903 948 1.892474 CCTGTTTGGGTGTGGTTATGG 59.108 52.381 0.00 0.00 0.00 2.74
905 950 1.627864 GCCTGTTTGGGTGTGGTTAT 58.372 50.000 0.00 0.00 36.00 1.89
909 954 2.917227 GGGCCTGTTTGGGTGTGG 60.917 66.667 0.84 0.00 36.00 4.17
910 955 1.533753 ATGGGCCTGTTTGGGTGTG 60.534 57.895 4.53 0.00 36.00 3.82
912 957 2.342650 CGATGGGCCTGTTTGGGTG 61.343 63.158 4.53 0.00 36.00 4.61
913 958 2.035626 CGATGGGCCTGTTTGGGT 59.964 61.111 4.53 0.00 36.00 4.51
1037 1094 2.328589 TGGAGGAGGAGGAGGAGGG 61.329 68.421 0.00 0.00 0.00 4.30
1307 1385 3.718210 GATGGGCACGAGGTCGACC 62.718 68.421 27.67 27.67 43.02 4.79
1574 1652 1.672356 GCATTCGGTGGCAGACTGT 60.672 57.895 3.99 0.00 32.09 3.55
1576 1654 1.376424 CAGCATTCGGTGGCAGACT 60.376 57.895 0.00 0.00 36.97 3.24
1595 1673 1.671054 CACAACGGATTCAGCGGGT 60.671 57.895 0.00 0.00 0.00 5.28
1619 1697 3.544684 TCATTTGCAGTCGATGGCTATT 58.455 40.909 11.74 0.06 0.00 1.73
1620 1698 3.198409 TCATTTGCAGTCGATGGCTAT 57.802 42.857 11.74 4.02 0.00 2.97
1628 1706 3.348309 CATCACGAATCATTTGCAGTCG 58.652 45.455 0.00 0.00 37.71 4.18
1633 1711 3.141002 ACAGCATCACGAATCATTTGC 57.859 42.857 0.00 0.00 0.00 3.68
1644 1722 0.250901 ACACAGGGGAACAGCATCAC 60.251 55.000 0.00 0.00 0.00 3.06
1650 1728 1.597742 CACTTGACACAGGGGAACAG 58.402 55.000 0.00 0.00 0.00 3.16
1664 1742 5.515270 CAGCTGATTTTGATATGTGCACTTG 59.485 40.000 19.41 0.00 0.00 3.16
1734 1812 6.647212 TGTTTAAGACAGAACATGATAGCG 57.353 37.500 0.00 0.00 33.40 4.26
1755 1833 0.394938 TGCGTCCAATACACACCTGT 59.605 50.000 0.00 0.00 0.00 4.00
1769 1847 2.854805 GCACTTGAAGAAAACCTGCGTC 60.855 50.000 0.00 0.00 0.00 5.19
1807 1895 5.962433 ACACACTACTGCTACGAAATACAT 58.038 37.500 0.00 0.00 0.00 2.29
1809 1897 5.860182 TCAACACACTACTGCTACGAAATAC 59.140 40.000 0.00 0.00 0.00 1.89
1811 1899 4.684703 GTCAACACACTACTGCTACGAAAT 59.315 41.667 0.00 0.00 0.00 2.17
1813 1901 3.635331 GTCAACACACTACTGCTACGAA 58.365 45.455 0.00 0.00 0.00 3.85
1814 1902 2.350102 CGTCAACACACTACTGCTACGA 60.350 50.000 0.00 0.00 0.00 3.43
1815 1903 1.976728 CGTCAACACACTACTGCTACG 59.023 52.381 0.00 0.00 0.00 3.51
1816 1904 1.719780 GCGTCAACACACTACTGCTAC 59.280 52.381 0.00 0.00 0.00 3.58
1817 1905 1.338655 TGCGTCAACACACTACTGCTA 59.661 47.619 0.00 0.00 0.00 3.49
1818 1906 0.104120 TGCGTCAACACACTACTGCT 59.896 50.000 0.00 0.00 0.00 4.24
1819 1907 1.136252 CATGCGTCAACACACTACTGC 60.136 52.381 0.00 0.00 0.00 4.40
1820 1908 2.403259 TCATGCGTCAACACACTACTG 58.597 47.619 0.00 0.00 0.00 2.74
1894 1982 1.811266 GATGTGCCACGACTCGCAT 60.811 57.895 0.00 0.00 37.33 4.73
1937 2025 8.123445 CAATCTTTGCTGGTGCTTTATATTTC 57.877 34.615 0.00 0.00 40.48 2.17
2024 2112 4.753107 GGGTAACTCTGACAAATGTTTCGA 59.247 41.667 0.00 0.00 0.00 3.71
2025 2113 4.755123 AGGGTAACTCTGACAAATGTTTCG 59.245 41.667 0.00 0.00 0.00 3.46
2046 2134 7.639113 TTAAAGGGATGCTAACACATTTAGG 57.361 36.000 0.00 0.00 0.00 2.69
2048 2136 8.588290 ACATTAAAGGGATGCTAACACATTTA 57.412 30.769 0.00 0.00 0.00 1.40
2090 2194 1.879575 AGTACATCCCTAGGCTGCAA 58.120 50.000 2.05 0.00 0.00 4.08
2113 2217 7.323656 CGCTGTCTTTTGTCCTTTTTATTAGTG 59.676 37.037 0.00 0.00 0.00 2.74
2179 2283 4.952460 ACTGCAAGAAAAATGAACATGCT 58.048 34.783 0.00 0.00 37.43 3.79
2223 2327 1.242076 CCCTCATTCCCGATGCATTC 58.758 55.000 0.00 0.00 35.64 2.67
2282 2386 6.837312 ACACCAGCCATGCTTATTTATAGTA 58.163 36.000 0.00 0.00 36.40 1.82
2334 2438 6.374333 TGGTAAAATTACAGAGCTAGCAAAGG 59.626 38.462 18.83 5.83 35.37 3.11
2371 2475 7.610865 ACGATGTGATAAATTCATGGGTTTTT 58.389 30.769 0.00 0.00 36.54 1.94
2389 2493 6.668541 AAGTTCCATATTGAAGACGATGTG 57.331 37.500 0.00 0.00 0.00 3.21
2497 2601 5.621193 CCTTAGTGTGAAAAAGGGAGAAGA 58.379 41.667 0.00 0.00 36.85 2.87
2509 2613 5.100344 TGTGTTGTTACCCTTAGTGTGAA 57.900 39.130 0.00 0.00 0.00 3.18
2547 2651 5.688621 CAGAGAAATGTTTTCACACATGTGG 59.311 40.000 28.64 17.57 45.65 4.17
2587 2691 0.874390 GAAATCACACTGCGGCTGAA 59.126 50.000 14.07 0.00 0.00 3.02
2636 2740 7.556433 CGTACTTGACTCTAAAAACAGAACTG 58.444 38.462 0.00 0.00 0.00 3.16
2651 2755 0.173708 GGCTAGCTGCGTACTTGACT 59.826 55.000 15.72 0.00 44.05 3.41
2657 2761 1.651987 TCAAATGGCTAGCTGCGTAC 58.348 50.000 15.72 0.00 44.05 3.67
2660 2764 2.857592 ATTTCAAATGGCTAGCTGCG 57.142 45.000 15.72 0.00 44.05 5.18
2717 2821 7.504924 TCAGTTCTTTACCATTAACCACTTG 57.495 36.000 0.00 0.00 0.00 3.16
2848 2952 1.409064 TGACTCCATCATCGTACCTGC 59.591 52.381 0.00 0.00 29.99 4.85
3091 3195 3.206964 TCTGGCACACAACGAAACATAA 58.793 40.909 0.00 0.00 0.00 1.90
3260 3364 0.843309 TGAAAGGCACCTCTCCACAA 59.157 50.000 0.00 0.00 0.00 3.33
3301 3410 2.411628 ATGCGCCACCTAACATAACA 57.588 45.000 4.18 0.00 0.00 2.41
3302 3411 2.220133 CGTATGCGCCACCTAACATAAC 59.780 50.000 4.18 0.00 0.00 1.89
3514 3623 4.201910 GCAGCAAACGAGGCTTTTCATATA 60.202 41.667 0.00 0.00 40.23 0.86
3696 3805 8.734386 CAAGGCAAAGTAAGACAGATAAGAATT 58.266 33.333 0.00 0.00 0.00 2.17
3701 3810 7.386848 GTGTACAAGGCAAAGTAAGACAGATAA 59.613 37.037 0.00 0.00 0.00 1.75
4022 4132 6.364568 TTTCCTCATCAGAGTCTTCATGAA 57.635 37.500 8.12 8.12 40.40 2.57
4262 4391 7.828717 TGAGCATCATACCTGATTAAAAAGACA 59.171 33.333 0.00 0.00 42.56 3.41
4420 4549 8.365060 AGGACAAAATTCATGTGGATTAATGA 57.635 30.769 0.00 0.00 0.00 2.57
4758 4888 4.849810 TCCTTCTTTCCTGAATCCACCTTA 59.150 41.667 0.00 0.00 0.00 2.69
4787 4917 0.606401 GTCCAGCTGTGCTTTAGCCA 60.606 55.000 13.81 0.00 42.07 4.75
4809 4939 2.038689 AGTCGGTTTCTCCTTCTTTCCC 59.961 50.000 0.00 0.00 0.00 3.97
4936 5069 2.092807 TGGTGTCATCATCCATGTCCTG 60.093 50.000 0.00 0.00 33.66 3.86
4950 5083 2.847234 ACCTCGGCCTTGGTGTCA 60.847 61.111 14.64 0.00 34.90 3.58
5073 5206 2.107292 TCTCTTCTCGTCCTCGGCG 61.107 63.158 0.00 0.00 37.69 6.46
5091 5224 1.600636 CTTCATGGGCACGGTGTGT 60.601 57.895 10.24 0.00 35.75 3.72
5280 5413 1.073722 CTTGGCCTTGGACTGCTCA 59.926 57.895 3.32 0.00 0.00 4.26
5406 5539 1.995626 CTTCATCCGGGGGTCCACT 60.996 63.158 0.00 0.00 0.00 4.00
5478 5611 4.715523 TTCTTCCCCTTGCCGCCG 62.716 66.667 0.00 0.00 0.00 6.46
5584 5720 0.110823 CGCCAAACTACTCAACGTGC 60.111 55.000 0.00 0.00 0.00 5.34
5586 5722 1.338973 TCTCGCCAAACTACTCAACGT 59.661 47.619 0.00 0.00 0.00 3.99
5601 5737 1.938926 GCTCATCCATAAGCCTCTCGC 60.939 57.143 0.00 0.00 37.98 5.03
5610 5746 0.178767 ACGCAGCTGCTCATCCATAA 59.821 50.000 34.22 0.00 39.32 1.90
5627 5763 0.504384 CTTTCAGCAGTCGACACACG 59.496 55.000 19.50 4.12 44.09 4.49
5629 5765 2.309528 AACTTTCAGCAGTCGACACA 57.690 45.000 19.50 0.00 0.00 3.72
5636 5772 1.334869 CAGGCGAAAACTTTCAGCAGT 59.665 47.619 15.63 5.17 37.95 4.40
5721 5857 9.283420 CTCTCATAGCATCAACGTATTATAGTG 57.717 37.037 0.00 0.00 0.00 2.74
5753 5893 7.084486 ACAAAACTTTTCTGACAGACTGAAAC 58.916 34.615 10.08 1.03 42.84 2.78
5754 5894 7.214467 ACAAAACTTTTCTGACAGACTGAAA 57.786 32.000 10.08 2.73 41.97 2.69
5755 5895 6.817765 ACAAAACTTTTCTGACAGACTGAA 57.182 33.333 10.08 0.11 35.29 3.02
5780 5920 2.609350 TCGTCCAATACAAGCGTAACC 58.391 47.619 0.00 0.00 0.00 2.85
5794 5934 7.338196 ACAAATTATTGTCCACAATATCGTCCA 59.662 33.333 11.97 0.00 46.78 4.02
5802 5942 7.603404 CCACAATCACAAATTATTGTCCACAAT 59.397 33.333 9.80 9.80 46.78 2.71
5880 6021 3.818773 TGTTTTCTAGTAGGCCACAAAGC 59.181 43.478 5.01 1.70 0.00 3.51
5938 6081 9.723601 TCATGATATTGCTGCTACAAATATGTA 57.276 29.630 0.00 0.00 41.05 2.29
5939 6082 8.625786 TCATGATATTGCTGCTACAAATATGT 57.374 30.769 0.00 0.00 43.74 2.29
5940 6083 9.556030 CTTCATGATATTGCTGCTACAAATATG 57.444 33.333 0.00 0.00 32.27 1.78
5941 6084 9.511272 TCTTCATGATATTGCTGCTACAAATAT 57.489 29.630 0.00 1.98 32.27 1.28
5943 6086 7.812690 TCTTCATGATATTGCTGCTACAAAT 57.187 32.000 0.00 0.00 32.27 2.32
5944 6087 7.628769 TTCTTCATGATATTGCTGCTACAAA 57.371 32.000 0.00 0.00 32.27 2.83
5945 6088 7.628769 TTTCTTCATGATATTGCTGCTACAA 57.371 32.000 0.00 0.00 0.00 2.41
5946 6089 7.121020 TGTTTTCTTCATGATATTGCTGCTACA 59.879 33.333 0.00 0.00 0.00 2.74
5947 6090 7.475015 TGTTTTCTTCATGATATTGCTGCTAC 58.525 34.615 0.00 0.00 0.00 3.58
5948 6091 7.337689 ACTGTTTTCTTCATGATATTGCTGCTA 59.662 33.333 0.00 0.00 0.00 3.49
5949 6092 6.152323 ACTGTTTTCTTCATGATATTGCTGCT 59.848 34.615 0.00 0.00 0.00 4.24
5950 6093 6.327934 ACTGTTTTCTTCATGATATTGCTGC 58.672 36.000 0.00 0.00 0.00 5.25
5951 6094 7.642978 GCTACTGTTTTCTTCATGATATTGCTG 59.357 37.037 0.00 0.00 0.00 4.41
5952 6095 7.337689 TGCTACTGTTTTCTTCATGATATTGCT 59.662 33.333 0.00 0.00 0.00 3.91
5953 6096 7.475015 TGCTACTGTTTTCTTCATGATATTGC 58.525 34.615 0.00 0.00 0.00 3.56
5954 6097 9.447040 CATGCTACTGTTTTCTTCATGATATTG 57.553 33.333 0.00 0.00 33.64 1.90
5955 6098 9.399797 TCATGCTACTGTTTTCTTCATGATATT 57.600 29.630 0.00 0.00 35.39 1.28
5956 6099 8.969260 TCATGCTACTGTTTTCTTCATGATAT 57.031 30.769 0.00 0.00 35.39 1.63
5957 6100 8.791327 TTCATGCTACTGTTTTCTTCATGATA 57.209 30.769 0.00 0.00 38.67 2.15
5958 6101 7.692460 TTCATGCTACTGTTTTCTTCATGAT 57.308 32.000 0.00 0.00 38.67 2.45
5959 6102 7.532571 CATTCATGCTACTGTTTTCTTCATGA 58.467 34.615 0.00 0.00 37.60 3.07
5960 6103 7.736031 CATTCATGCTACTGTTTTCTTCATG 57.264 36.000 0.00 0.00 33.24 3.07
5987 6130 4.282449 TCATTCCGAGTTAACTGAGACCAA 59.718 41.667 14.14 1.88 0.00 3.67
5989 6132 4.451629 TCATTCCGAGTTAACTGAGACC 57.548 45.455 14.14 0.00 0.00 3.85
6051 6199 2.224867 CCCAAAGGCTTTCTCCTCTTCA 60.225 50.000 10.08 0.00 34.82 3.02
6052 6200 2.441410 CCCAAAGGCTTTCTCCTCTTC 58.559 52.381 10.08 0.00 34.82 2.87
6053 6201 1.076187 CCCCAAAGGCTTTCTCCTCTT 59.924 52.381 10.08 0.00 34.82 2.85
6054 6202 0.701147 CCCCAAAGGCTTTCTCCTCT 59.299 55.000 10.08 0.00 34.82 3.69
6055 6203 0.405973 ACCCCAAAGGCTTTCTCCTC 59.594 55.000 10.08 0.00 40.58 3.71
6072 6220 4.960866 AAACGGCGACCCCCAACC 62.961 66.667 16.62 0.00 0.00 3.77
6073 6221 3.359523 GAAACGGCGACCCCCAAC 61.360 66.667 16.62 0.00 0.00 3.77
6119 6271 3.012518 CGTGGATTCAAAGCTTCCATCT 58.987 45.455 7.33 0.00 41.37 2.90
6122 6274 1.533625 CCGTGGATTCAAAGCTTCCA 58.466 50.000 0.00 0.00 37.20 3.53
6138 6290 4.530857 GCAGGGTCGCTATGCCGT 62.531 66.667 0.00 0.00 33.81 5.68
6191 6345 1.151777 GATCCGGATTCGCTTCGCAA 61.152 55.000 20.22 0.00 34.56 4.85
6192 6346 1.591594 GATCCGGATTCGCTTCGCA 60.592 57.895 20.22 0.00 34.56 5.10
6194 6348 1.664965 GGGATCCGGATTCGCTTCG 60.665 63.158 20.22 0.00 34.56 3.79
6220 6374 2.260844 TCATCGGATTGCTGGATTCC 57.739 50.000 0.00 0.00 0.00 3.01
6221 6375 3.405831 TCATCATCGGATTGCTGGATTC 58.594 45.455 0.00 0.00 0.00 2.52
6222 6376 3.497103 TCATCATCGGATTGCTGGATT 57.503 42.857 0.00 0.00 0.00 3.01
6223 6377 3.344515 CATCATCATCGGATTGCTGGAT 58.655 45.455 0.00 0.00 0.00 3.41
6224 6378 2.774687 CATCATCATCGGATTGCTGGA 58.225 47.619 0.00 0.00 0.00 3.86
6230 6404 3.136763 GTCACTGCATCATCATCGGATT 58.863 45.455 0.00 0.00 0.00 3.01
6232 6406 1.536709 CGTCACTGCATCATCATCGGA 60.537 52.381 0.00 0.00 0.00 4.55
6298 6713 1.221414 GTGAGCCATCATTAGTCGGC 58.779 55.000 0.00 0.00 45.23 5.54
6321 6740 1.168714 GTGGGAGTGCTTTTAGGCTG 58.831 55.000 0.00 0.00 0.00 4.85
6354 6776 5.870706 AGAAAAGGAGTATATAAGCCAGGC 58.129 41.667 1.84 1.84 0.00 4.85
6356 6778 7.711339 ACGAAAGAAAAGGAGTATATAAGCCAG 59.289 37.037 0.00 0.00 0.00 4.85
6358 6780 7.709613 TCACGAAAGAAAAGGAGTATATAAGCC 59.290 37.037 0.00 0.00 0.00 4.35
6380 6802 4.563184 GCTAGTACTCCAAACATCTTCACG 59.437 45.833 0.00 0.00 0.00 4.35
6403 6825 6.480320 GCTTGATAACTACAGTAGACCATTGG 59.520 42.308 14.94 0.00 0.00 3.16
6407 6829 5.269991 AGGCTTGATAACTACAGTAGACCA 58.730 41.667 14.94 3.71 0.00 4.02
6409 6831 6.452494 TGAGGCTTGATAACTACAGTAGAC 57.548 41.667 14.94 3.78 0.00 2.59
6414 6836 6.108687 TGATGTTGAGGCTTGATAACTACAG 58.891 40.000 0.00 0.00 0.00 2.74
6415 6837 6.048732 TGATGTTGAGGCTTGATAACTACA 57.951 37.500 0.00 0.00 0.00 2.74
6601 7033 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
6602 7034 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
6612 7044 2.746277 CCCTTGAAGGCCGAACGG 60.746 66.667 5.50 9.00 32.73 4.44
6620 7052 1.801309 TTTTTCGGCGCCCTTGAAGG 61.801 55.000 23.46 3.69 34.30 3.46
6621 7053 0.387239 CTTTTTCGGCGCCCTTGAAG 60.387 55.000 23.46 16.07 0.00 3.02
6622 7054 0.820074 TCTTTTTCGGCGCCCTTGAA 60.820 50.000 23.46 16.26 0.00 2.69
6623 7055 1.228003 TCTTTTTCGGCGCCCTTGA 60.228 52.632 23.46 10.06 0.00 3.02
6624 7056 1.210155 CTCTTTTTCGGCGCCCTTG 59.790 57.895 23.46 7.26 0.00 3.61
6625 7057 2.626780 GCTCTTTTTCGGCGCCCTT 61.627 57.895 23.46 0.00 0.00 3.95
6626 7058 3.056328 GCTCTTTTTCGGCGCCCT 61.056 61.111 23.46 0.00 0.00 5.19
6627 7059 4.116328 GGCTCTTTTTCGGCGCCC 62.116 66.667 23.46 2.37 34.75 6.13
6628 7060 4.460873 CGGCTCTTTTTCGGCGCC 62.461 66.667 19.07 19.07 42.11 6.53
6631 7063 1.228657 ACAGACGGCTCTTTTTCGGC 61.229 55.000 0.00 0.00 0.00 5.54
6632 7064 0.512952 CACAGACGGCTCTTTTTCGG 59.487 55.000 0.00 0.00 0.00 4.30
6633 7065 0.512952 CCACAGACGGCTCTTTTTCG 59.487 55.000 0.00 0.00 0.00 3.46
6634 7066 0.875059 CCCACAGACGGCTCTTTTTC 59.125 55.000 0.00 0.00 0.00 2.29
6635 7067 1.172812 GCCCACAGACGGCTCTTTTT 61.173 55.000 0.00 0.00 43.48 1.94
6636 7068 1.600916 GCCCACAGACGGCTCTTTT 60.601 57.895 0.00 0.00 43.48 2.27
6637 7069 2.032681 GCCCACAGACGGCTCTTT 59.967 61.111 0.00 0.00 43.48 2.52
6644 7076 4.988598 ACGGCTTGCCCACAGACG 62.989 66.667 6.02 0.00 0.00 4.18
6645 7077 3.050275 GACGGCTTGCCCACAGAC 61.050 66.667 6.02 0.00 0.00 3.51
6646 7078 4.680237 CGACGGCTTGCCCACAGA 62.680 66.667 6.02 0.00 0.00 3.41
6657 7089 2.967615 GGCCAATCTAGCGACGGC 60.968 66.667 0.00 0.00 39.31 5.68
6658 7090 2.280186 GGGCCAATCTAGCGACGG 60.280 66.667 4.39 0.00 0.00 4.79
6659 7091 1.461091 TAGGGGCCAATCTAGCGACG 61.461 60.000 4.39 0.00 0.00 5.12
6660 7092 0.756903 TTAGGGGCCAATCTAGCGAC 59.243 55.000 4.39 0.00 0.00 5.19
6661 7093 1.048601 CTTAGGGGCCAATCTAGCGA 58.951 55.000 4.39 0.00 0.00 4.93
6662 7094 0.035458 CCTTAGGGGCCAATCTAGCG 59.965 60.000 4.39 0.00 0.00 4.26
6675 7107 1.465200 GGAGCTAGGTCGCCCTTAGG 61.465 65.000 15.43 0.00 42.66 2.69
6676 7108 1.465200 GGGAGCTAGGTCGCCCTTAG 61.465 65.000 24.22 0.00 42.09 2.18
6677 7109 1.457079 GGGAGCTAGGTCGCCCTTA 60.457 63.158 24.22 0.00 42.09 2.69
6678 7110 2.764547 GGGAGCTAGGTCGCCCTT 60.765 66.667 24.22 0.00 42.09 3.95
6679 7111 4.075793 TGGGAGCTAGGTCGCCCT 62.076 66.667 29.34 0.00 45.12 5.19
6680 7112 3.541713 CTGGGAGCTAGGTCGCCC 61.542 72.222 29.34 20.74 45.10 6.13
6681 7113 2.760385 ACTGGGAGCTAGGTCGCC 60.760 66.667 29.34 23.22 0.00 5.54
6682 7114 2.809010 GACTGGGAGCTAGGTCGC 59.191 66.667 26.90 26.90 0.00 5.19
6683 7115 3.111939 CGACTGGGAGCTAGGTCG 58.888 66.667 15.43 8.94 43.74 4.79
6684 7116 1.716826 CGACGACTGGGAGCTAGGTC 61.717 65.000 13.67 13.67 0.00 3.85
6685 7117 1.749638 CGACGACTGGGAGCTAGGT 60.750 63.158 0.00 0.00 0.00 3.08
6686 7118 2.482333 CCGACGACTGGGAGCTAGG 61.482 68.421 0.00 0.00 0.00 3.02
6687 7119 3.111939 CCGACGACTGGGAGCTAG 58.888 66.667 0.00 0.00 0.00 3.42
6688 7120 3.138798 GCCGACGACTGGGAGCTA 61.139 66.667 0.00 0.00 0.00 3.32
6694 7126 4.742201 CTGTGGGCCGACGACTGG 62.742 72.222 13.67 0.00 0.00 4.00
6695 7127 4.742201 CCTGTGGGCCGACGACTG 62.742 72.222 13.67 3.51 0.00 3.51
6697 7129 4.736896 GACCTGTGGGCCGACGAC 62.737 72.222 13.67 0.00 35.63 4.34
6726 7158 1.627879 TATTTTGTACGGACGTCGCC 58.372 50.000 9.92 0.00 43.89 5.54
6727 7159 4.676471 TCATATATTTTGTACGGACGTCGC 59.324 41.667 9.92 1.55 43.89 5.19
6728 7160 6.736807 TTCATATATTTTGTACGGACGTCG 57.263 37.500 9.92 7.64 45.88 5.12
6729 7161 8.598075 AGTTTTCATATATTTTGTACGGACGTC 58.402 33.333 7.13 7.13 0.00 4.34
6730 7162 8.483307 AGTTTTCATATATTTTGTACGGACGT 57.517 30.769 1.98 1.98 0.00 4.34
6731 7163 7.786118 CGAGTTTTCATATATTTTGTACGGACG 59.214 37.037 0.00 0.00 0.00 4.79
6732 7164 8.810427 TCGAGTTTTCATATATTTTGTACGGAC 58.190 33.333 0.00 0.00 0.00 4.79
6733 7165 8.810427 GTCGAGTTTTCATATATTTTGTACGGA 58.190 33.333 0.00 0.00 0.00 4.69
6734 7166 7.786118 CGTCGAGTTTTCATATATTTTGTACGG 59.214 37.037 0.00 0.00 0.00 4.02
6735 7167 8.525876 TCGTCGAGTTTTCATATATTTTGTACG 58.474 33.333 0.00 0.00 0.00 3.67
6742 7174 9.221775 GCAAAAATCGTCGAGTTTTCATATATT 57.778 29.630 25.52 4.93 37.66 1.28
6743 7175 8.394877 TGCAAAAATCGTCGAGTTTTCATATAT 58.605 29.630 25.52 5.59 37.66 0.86
6744 7176 7.690637 GTGCAAAAATCGTCGAGTTTTCATATA 59.309 33.333 25.52 11.02 37.66 0.86
6745 7177 6.523201 GTGCAAAAATCGTCGAGTTTTCATAT 59.477 34.615 25.52 6.91 37.66 1.78
6746 7178 5.849081 GTGCAAAAATCGTCGAGTTTTCATA 59.151 36.000 25.52 14.44 37.66 2.15
6747 7179 4.675114 GTGCAAAAATCGTCGAGTTTTCAT 59.325 37.500 25.52 7.58 37.66 2.57
6748 7180 4.032355 GTGCAAAAATCGTCGAGTTTTCA 58.968 39.130 25.52 21.95 37.66 2.69
6749 7181 4.032355 TGTGCAAAAATCGTCGAGTTTTC 58.968 39.130 25.52 20.21 37.66 2.29
6750 7182 4.022464 TGTGCAAAAATCGTCGAGTTTT 57.978 36.364 23.41 23.41 39.79 2.43
6751 7183 3.684103 TGTGCAAAAATCGTCGAGTTT 57.316 38.095 14.42 14.42 31.06 2.66
6752 7184 3.684103 TTGTGCAAAAATCGTCGAGTT 57.316 38.095 1.38 1.38 0.00 3.01
6753 7185 3.064820 AGTTTGTGCAAAAATCGTCGAGT 59.935 39.130 5.11 0.00 31.33 4.18
6754 7186 3.617669 AGTTTGTGCAAAAATCGTCGAG 58.382 40.909 5.11 0.00 31.33 4.04
6755 7187 3.613563 GAGTTTGTGCAAAAATCGTCGA 58.386 40.909 5.11 0.00 31.33 4.20
6756 7188 2.397154 CGAGTTTGTGCAAAAATCGTCG 59.603 45.455 23.36 19.02 37.18 5.12
6757 7189 2.719046 CCGAGTTTGTGCAAAAATCGTC 59.281 45.455 26.38 15.80 38.77 4.20
6758 7190 2.726633 CCGAGTTTGTGCAAAAATCGT 58.273 42.857 26.38 10.72 38.77 3.73
6759 7191 1.451651 GCCGAGTTTGTGCAAAAATCG 59.548 47.619 24.08 24.08 39.47 3.34
6760 7192 1.451651 CGCCGAGTTTGTGCAAAAATC 59.548 47.619 5.11 8.24 31.33 2.17
6761 7193 1.066303 TCGCCGAGTTTGTGCAAAAAT 59.934 42.857 5.11 0.00 31.33 1.82
6762 7194 0.452184 TCGCCGAGTTTGTGCAAAAA 59.548 45.000 0.00 0.00 31.33 1.94
6763 7195 0.452184 TTCGCCGAGTTTGTGCAAAA 59.548 45.000 0.00 0.00 31.33 2.44
6764 7196 0.452184 TTTCGCCGAGTTTGTGCAAA 59.548 45.000 0.00 0.00 0.00 3.68
6765 7197 0.248296 GTTTCGCCGAGTTTGTGCAA 60.248 50.000 0.00 0.00 0.00 4.08
6766 7198 1.092921 AGTTTCGCCGAGTTTGTGCA 61.093 50.000 0.00 0.00 0.00 4.57
6767 7199 0.028902 AAGTTTCGCCGAGTTTGTGC 59.971 50.000 0.00 0.00 0.00 4.57
6768 7200 1.329292 TGAAGTTTCGCCGAGTTTGTG 59.671 47.619 0.00 0.00 0.00 3.33
6769 7201 1.658994 TGAAGTTTCGCCGAGTTTGT 58.341 45.000 0.00 0.00 0.00 2.83
6770 7202 2.969443 ATGAAGTTTCGCCGAGTTTG 57.031 45.000 0.00 0.00 0.00 2.93
6771 7203 2.875933 TCAATGAAGTTTCGCCGAGTTT 59.124 40.909 0.00 0.00 0.00 2.66
6772 7204 2.489971 TCAATGAAGTTTCGCCGAGTT 58.510 42.857 0.00 0.00 0.00 3.01
6773 7205 2.163818 TCAATGAAGTTTCGCCGAGT 57.836 45.000 0.00 0.00 0.00 4.18
6774 7206 3.109230 CTTCAATGAAGTTTCGCCGAG 57.891 47.619 14.47 0.00 35.21 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.