Multiple sequence alignment - TraesCS1D01G412500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G412500 chr1D 100.000 4817 0 0 1 4817 473854774 473859590 0.000000e+00 8896
1 TraesCS1D01G412500 chr1B 90.498 4378 176 91 553 4812 658907773 658912028 0.000000e+00 5559
2 TraesCS1D01G412500 chr1B 91.690 361 24 3 197 553 658907188 658907546 3.350000e-136 496
3 TraesCS1D01G412500 chr1B 87.895 190 21 2 34 223 524479193 524479380 6.270000e-54 222
4 TraesCS1D01G412500 chrUn 90.198 3336 166 62 739 4019 1495015 1491786 0.000000e+00 4200
5 TraesCS1D01G412500 chrUn 86.732 814 59 27 4018 4804 1491758 1490967 0.000000e+00 859
6 TraesCS1D01G412500 chr7A 92.683 451 29 3 34 483 692504207 692503760 0.000000e+00 647
7 TraesCS1D01G412500 chr7A 89.227 427 43 3 34 459 709424550 709424974 9.180000e-147 531
8 TraesCS1D01G412500 chr7B 89.474 456 39 4 34 486 735919073 735918624 7.000000e-158 568
9 TraesCS1D01G412500 chr7B 88.290 427 40 5 34 459 709628647 709629064 2.000000e-138 503
10 TraesCS1D01G412500 chr2D 88.132 455 51 3 33 486 446847792 446847340 5.490000e-149 538
11 TraesCS1D01G412500 chr7D 87.239 431 51 4 55 483 569123673 569124101 5.600000e-134 488
12 TraesCS1D01G412500 chr3A 86.220 254 33 2 2745 2997 78718437 78718185 1.710000e-69 274
13 TraesCS1D01G412500 chr3D 85.375 253 35 2 2745 2996 67459578 67459327 1.330000e-65 261
14 TraesCS1D01G412500 chr3B 84.524 252 37 2 2746 2996 112263552 112263302 1.040000e-61 248
15 TraesCS1D01G412500 chr2B 89.005 191 19 2 33 223 46945681 46945869 8.060000e-58 235
16 TraesCS1D01G412500 chr2A 88.482 191 21 1 33 223 470240302 470240491 3.750000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G412500 chr1D 473854774 473859590 4816 False 8896.0 8896 100.000 1 4817 1 chr1D.!!$F1 4816
1 TraesCS1D01G412500 chr1B 658907188 658912028 4840 False 3027.5 5559 91.094 197 4812 2 chr1B.!!$F2 4615
2 TraesCS1D01G412500 chrUn 1490967 1495015 4048 True 2529.5 4200 88.465 739 4804 2 chrUn.!!$R1 4065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 957 0.031616 ATTTCGCTCCCTCCCTCTCT 60.032 55.000 0.00 0.00 0.00 3.10 F
1258 1532 0.462759 GAAGCGGGACAGGAAGGATG 60.463 60.000 0.00 0.00 0.00 3.51 F
2673 3030 0.037697 CGTCCTCGTCACCATCCAAA 60.038 55.000 0.00 0.00 0.00 3.28 F
2710 3072 1.401318 GCATGGCATGGCATGGGTAA 61.401 55.000 44.47 18.18 0.00 2.85 F
3549 3911 3.493877 CGGCTAGCTTGATCAAGAAGATG 59.506 47.826 34.43 21.01 40.79 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2673 3030 0.393267 GCCATGCCATGCCATGTTTT 60.393 50.0 14.98 0.0 40.72 2.43 R
2694 3056 0.759812 CCATTACCCATGCCATGCCA 60.760 55.0 0.00 0.0 0.00 4.92 R
3549 3911 0.384353 GAAGCGAGCAAACGACCAAC 60.384 55.0 0.00 0.0 35.09 3.77 R
3679 4041 0.536006 CATCTCCTCCAATTCCGGCC 60.536 60.0 0.00 0.0 0.00 6.13 R
4407 4815 0.672342 ACGACCGCATACTATGTCCC 59.328 55.0 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.719268 AGCAGAGAGAGAGAGAGAACA 57.281 47.619 0.00 0.00 0.00 3.18
23 24 4.032960 AGCAGAGAGAGAGAGAGAACAA 57.967 45.455 0.00 0.00 0.00 2.83
24 25 4.406456 AGCAGAGAGAGAGAGAGAACAAA 58.594 43.478 0.00 0.00 0.00 2.83
25 26 5.018809 AGCAGAGAGAGAGAGAGAACAAAT 58.981 41.667 0.00 0.00 0.00 2.32
26 27 5.126061 AGCAGAGAGAGAGAGAGAACAAATC 59.874 44.000 0.00 0.00 0.00 2.17
27 28 5.572211 CAGAGAGAGAGAGAGAACAAATCG 58.428 45.833 0.00 0.00 0.00 3.34
28 29 5.353956 CAGAGAGAGAGAGAGAACAAATCGA 59.646 44.000 0.00 0.00 0.00 3.59
29 30 5.586243 AGAGAGAGAGAGAGAACAAATCGAG 59.414 44.000 0.00 0.00 0.00 4.04
30 31 5.496556 AGAGAGAGAGAGAACAAATCGAGA 58.503 41.667 0.00 0.00 0.00 4.04
31 32 6.122277 AGAGAGAGAGAGAACAAATCGAGAT 58.878 40.000 0.00 0.00 0.00 2.75
32 33 6.603201 AGAGAGAGAGAGAACAAATCGAGATT 59.397 38.462 0.00 0.00 0.00 2.40
33 34 7.122650 AGAGAGAGAGAGAACAAATCGAGATTT 59.877 37.037 5.32 5.32 41.33 2.17
34 35 7.610865 AGAGAGAGAGAACAAATCGAGATTTT 58.389 34.615 8.21 0.00 38.84 1.82
35 36 8.093927 AGAGAGAGAGAACAAATCGAGATTTTT 58.906 33.333 8.21 6.91 38.84 1.94
74 75 9.393512 AGGAACTTTCATTAATCAAGAGAGATG 57.606 33.333 9.87 0.00 27.25 2.90
75 76 8.127954 GGAACTTTCATTAATCAAGAGAGATGC 58.872 37.037 9.87 0.00 0.00 3.91
76 77 8.804912 AACTTTCATTAATCAAGAGAGATGCT 57.195 30.769 9.87 0.00 0.00 3.79
77 78 8.804912 ACTTTCATTAATCAAGAGAGATGCTT 57.195 30.769 9.87 0.00 0.00 3.91
78 79 9.896645 ACTTTCATTAATCAAGAGAGATGCTTA 57.103 29.630 9.87 0.00 0.00 3.09
80 81 9.671279 TTTCATTAATCAAGAGAGATGCTTACA 57.329 29.630 0.00 0.00 0.00 2.41
81 82 9.842775 TTCATTAATCAAGAGAGATGCTTACAT 57.157 29.630 0.00 0.00 39.98 2.29
82 83 9.842775 TCATTAATCAAGAGAGATGCTTACATT 57.157 29.630 0.00 0.00 36.35 2.71
84 85 9.842775 ATTAATCAAGAGAGATGCTTACATTCA 57.157 29.630 0.00 0.00 36.35 2.57
85 86 7.551035 AATCAAGAGAGATGCTTACATTCAC 57.449 36.000 0.00 0.00 36.35 3.18
86 87 6.041423 TCAAGAGAGATGCTTACATTCACA 57.959 37.500 0.00 0.00 36.35 3.58
87 88 5.871524 TCAAGAGAGATGCTTACATTCACAC 59.128 40.000 0.00 0.00 36.35 3.82
88 89 5.674052 AGAGAGATGCTTACATTCACACT 57.326 39.130 0.00 0.00 36.35 3.55
89 90 6.047511 AGAGAGATGCTTACATTCACACTT 57.952 37.500 0.00 0.00 36.35 3.16
90 91 5.873712 AGAGAGATGCTTACATTCACACTTG 59.126 40.000 0.00 0.00 36.35 3.16
91 92 5.798132 AGAGATGCTTACATTCACACTTGA 58.202 37.500 0.00 0.00 36.35 3.02
92 93 5.641209 AGAGATGCTTACATTCACACTTGAC 59.359 40.000 0.00 0.00 36.35 3.18
93 94 5.555017 AGATGCTTACATTCACACTTGACT 58.445 37.500 0.00 0.00 36.35 3.41
94 95 6.701340 AGATGCTTACATTCACACTTGACTA 58.299 36.000 0.00 0.00 36.35 2.59
95 96 7.334090 AGATGCTTACATTCACACTTGACTAT 58.666 34.615 0.00 0.00 36.35 2.12
96 97 6.726258 TGCTTACATTCACACTTGACTATG 57.274 37.500 0.00 0.00 0.00 2.23
97 98 5.122239 TGCTTACATTCACACTTGACTATGC 59.878 40.000 0.00 0.00 0.00 3.14
98 99 5.352569 GCTTACATTCACACTTGACTATGCT 59.647 40.000 0.00 0.00 0.00 3.79
99 100 6.535150 GCTTACATTCACACTTGACTATGCTA 59.465 38.462 0.00 0.00 0.00 3.49
100 101 7.254252 GCTTACATTCACACTTGACTATGCTAG 60.254 40.741 0.00 0.00 0.00 3.42
101 102 4.872691 ACATTCACACTTGACTATGCTAGC 59.127 41.667 8.10 8.10 0.00 3.42
102 103 4.808414 TTCACACTTGACTATGCTAGCT 57.192 40.909 17.23 4.07 0.00 3.32
103 104 5.914898 TTCACACTTGACTATGCTAGCTA 57.085 39.130 17.23 2.58 0.00 3.32
104 105 6.471233 TTCACACTTGACTATGCTAGCTAT 57.529 37.500 17.23 10.27 0.00 2.97
105 106 6.078202 TCACACTTGACTATGCTAGCTATC 57.922 41.667 17.23 8.52 0.00 2.08
106 107 5.830457 TCACACTTGACTATGCTAGCTATCT 59.170 40.000 17.23 0.66 0.00 1.98
107 108 6.016693 TCACACTTGACTATGCTAGCTATCTC 60.017 42.308 17.23 6.22 0.00 2.75
108 109 5.830457 ACACTTGACTATGCTAGCTATCTCA 59.170 40.000 17.23 8.75 0.00 3.27
109 110 6.493115 ACACTTGACTATGCTAGCTATCTCAT 59.507 38.462 17.23 2.04 0.00 2.90
110 111 7.015098 ACACTTGACTATGCTAGCTATCTCATT 59.985 37.037 17.23 0.23 0.00 2.57
111 112 8.518702 CACTTGACTATGCTAGCTATCTCATTA 58.481 37.037 17.23 0.00 0.00 1.90
112 113 8.739039 ACTTGACTATGCTAGCTATCTCATTAG 58.261 37.037 17.23 9.06 0.00 1.73
113 114 7.637631 TGACTATGCTAGCTATCTCATTAGG 57.362 40.000 17.23 0.00 0.00 2.69
114 115 6.605194 TGACTATGCTAGCTATCTCATTAGGG 59.395 42.308 17.23 0.00 0.00 3.53
115 116 6.736581 ACTATGCTAGCTATCTCATTAGGGA 58.263 40.000 17.23 0.00 0.00 4.20
116 117 7.185565 ACTATGCTAGCTATCTCATTAGGGAA 58.814 38.462 17.23 0.00 0.00 3.97
117 118 5.991933 TGCTAGCTATCTCATTAGGGAAG 57.008 43.478 17.23 0.00 0.00 3.46
118 119 5.398236 TGCTAGCTATCTCATTAGGGAAGT 58.602 41.667 17.23 0.00 0.00 3.01
119 120 5.841237 TGCTAGCTATCTCATTAGGGAAGTT 59.159 40.000 17.23 0.00 0.00 2.66
120 121 6.327626 TGCTAGCTATCTCATTAGGGAAGTTT 59.672 38.462 17.23 0.00 0.00 2.66
121 122 6.871492 GCTAGCTATCTCATTAGGGAAGTTTC 59.129 42.308 7.70 0.00 0.00 2.78
122 123 5.848406 AGCTATCTCATTAGGGAAGTTTCG 58.152 41.667 0.00 0.00 0.00 3.46
123 124 5.598830 AGCTATCTCATTAGGGAAGTTTCGA 59.401 40.000 0.00 0.00 0.00 3.71
124 125 6.098409 AGCTATCTCATTAGGGAAGTTTCGAA 59.902 38.462 0.00 0.00 0.00 3.71
125 126 6.422400 GCTATCTCATTAGGGAAGTTTCGAAG 59.578 42.308 0.00 0.00 0.00 3.79
126 127 4.504858 TCTCATTAGGGAAGTTTCGAAGC 58.495 43.478 3.49 3.49 0.00 3.86
127 128 3.606687 TCATTAGGGAAGTTTCGAAGCC 58.393 45.455 8.51 4.35 0.00 4.35
128 129 3.008594 TCATTAGGGAAGTTTCGAAGCCA 59.991 43.478 8.51 0.00 0.00 4.75
129 130 3.495434 TTAGGGAAGTTTCGAAGCCAA 57.505 42.857 8.51 0.00 0.00 4.52
130 131 1.605753 AGGGAAGTTTCGAAGCCAAC 58.394 50.000 8.51 0.00 0.00 3.77
131 132 1.133915 AGGGAAGTTTCGAAGCCAACA 60.134 47.619 8.51 0.00 0.00 3.33
132 133 1.679153 GGGAAGTTTCGAAGCCAACAA 59.321 47.619 8.51 0.00 0.00 2.83
133 134 2.287608 GGGAAGTTTCGAAGCCAACAAG 60.288 50.000 8.51 0.00 0.00 3.16
134 135 2.385315 GAAGTTTCGAAGCCAACAAGC 58.615 47.619 8.51 0.00 0.00 4.01
136 137 1.334869 AGTTTCGAAGCCAACAAGCTG 59.665 47.619 8.51 0.00 44.11 4.24
137 138 1.065551 GTTTCGAAGCCAACAAGCTGT 59.934 47.619 0.00 0.00 44.11 4.40
138 139 1.388547 TTCGAAGCCAACAAGCTGTT 58.611 45.000 0.00 0.00 44.11 3.16
139 140 0.944386 TCGAAGCCAACAAGCTGTTC 59.056 50.000 0.00 0.00 44.11 3.18
140 141 0.384725 CGAAGCCAACAAGCTGTTCG 60.385 55.000 0.00 0.00 44.11 3.95
141 142 0.661483 GAAGCCAACAAGCTGTTCGC 60.661 55.000 9.43 9.43 43.30 4.70
150 151 2.050985 GCTGTTCGCTGTTGCACC 60.051 61.111 0.00 0.00 39.64 5.01
151 152 2.639286 CTGTTCGCTGTTGCACCC 59.361 61.111 0.00 0.00 39.64 4.61
152 153 3.240606 CTGTTCGCTGTTGCACCCG 62.241 63.158 0.00 0.00 39.64 5.28
153 154 3.276846 GTTCGCTGTTGCACCCGT 61.277 61.111 0.00 0.00 39.64 5.28
154 155 2.970324 TTCGCTGTTGCACCCGTC 60.970 61.111 0.00 0.00 39.64 4.79
155 156 4.980805 TCGCTGTTGCACCCGTCC 62.981 66.667 0.00 0.00 39.64 4.79
157 158 4.947147 GCTGTTGCACCCGTCCCA 62.947 66.667 0.00 0.00 39.41 4.37
158 159 2.034066 CTGTTGCACCCGTCCCAT 59.966 61.111 0.00 0.00 0.00 4.00
159 160 1.298340 CTGTTGCACCCGTCCCATA 59.702 57.895 0.00 0.00 0.00 2.74
160 161 1.003112 TGTTGCACCCGTCCCATAC 60.003 57.895 0.00 0.00 0.00 2.39
161 162 1.003112 GTTGCACCCGTCCCATACA 60.003 57.895 0.00 0.00 0.00 2.29
162 163 0.606944 GTTGCACCCGTCCCATACAA 60.607 55.000 0.00 0.00 0.00 2.41
163 164 0.322098 TTGCACCCGTCCCATACAAG 60.322 55.000 0.00 0.00 0.00 3.16
164 165 2.112815 GCACCCGTCCCATACAAGC 61.113 63.158 0.00 0.00 0.00 4.01
165 166 1.298340 CACCCGTCCCATACAAGCA 59.702 57.895 0.00 0.00 0.00 3.91
166 167 0.322098 CACCCGTCCCATACAAGCAA 60.322 55.000 0.00 0.00 0.00 3.91
167 168 0.035439 ACCCGTCCCATACAAGCAAG 60.035 55.000 0.00 0.00 0.00 4.01
168 169 0.748005 CCCGTCCCATACAAGCAAGG 60.748 60.000 0.00 0.00 0.00 3.61
169 170 0.748005 CCGTCCCATACAAGCAAGGG 60.748 60.000 0.00 0.00 42.86 3.95
170 171 0.035439 CGTCCCATACAAGCAAGGGT 60.035 55.000 0.00 0.00 42.12 4.34
171 172 1.463674 GTCCCATACAAGCAAGGGTG 58.536 55.000 0.00 0.00 42.12 4.61
172 173 1.072266 TCCCATACAAGCAAGGGTGT 58.928 50.000 0.00 0.00 42.12 4.16
173 174 1.176527 CCCATACAAGCAAGGGTGTG 58.823 55.000 0.00 0.00 36.52 3.82
174 175 1.176527 CCATACAAGCAAGGGTGTGG 58.823 55.000 0.00 0.00 39.42 4.17
175 176 0.527565 CATACAAGCAAGGGTGTGGC 59.472 55.000 0.00 0.00 0.00 5.01
176 177 0.405585 ATACAAGCAAGGGTGTGGCT 59.594 50.000 0.00 0.00 40.14 4.75
177 178 1.060729 TACAAGCAAGGGTGTGGCTA 58.939 50.000 0.00 0.00 36.76 3.93
178 179 0.250901 ACAAGCAAGGGTGTGGCTAG 60.251 55.000 0.00 0.00 36.76 3.42
179 180 1.303643 AAGCAAGGGTGTGGCTAGC 60.304 57.895 6.04 6.04 36.76 3.42
180 181 2.034066 GCAAGGGTGTGGCTAGCA 59.966 61.111 18.24 0.00 0.00 3.49
181 182 2.042831 GCAAGGGTGTGGCTAGCAG 61.043 63.158 18.24 0.00 0.00 4.24
182 183 2.042831 CAAGGGTGTGGCTAGCAGC 61.043 63.158 18.24 8.93 41.46 5.25
183 184 2.528818 AAGGGTGTGGCTAGCAGCA 61.529 57.895 18.24 11.64 44.75 4.41
184 185 1.856539 AAGGGTGTGGCTAGCAGCAT 61.857 55.000 18.24 0.00 44.75 3.79
185 186 1.379044 GGGTGTGGCTAGCAGCATT 60.379 57.895 18.24 0.00 44.75 3.56
186 187 0.107214 GGGTGTGGCTAGCAGCATTA 60.107 55.000 18.24 0.00 44.75 1.90
187 188 1.303309 GGTGTGGCTAGCAGCATTAG 58.697 55.000 18.24 0.00 44.75 1.73
188 189 0.659957 GTGTGGCTAGCAGCATTAGC 59.340 55.000 18.24 5.29 44.75 3.09
189 190 0.252761 TGTGGCTAGCAGCATTAGCA 59.747 50.000 18.24 0.00 44.75 3.49
190 191 1.134007 TGTGGCTAGCAGCATTAGCAT 60.134 47.619 18.24 0.00 44.75 3.79
191 192 1.266175 GTGGCTAGCAGCATTAGCATG 59.734 52.381 18.24 0.00 44.75 4.06
230 231 6.040391 GCTAGACTAATGTTCCTCTCATGAGT 59.960 42.308 21.92 3.12 39.06 3.41
260 261 5.708697 TCATTCTGTCTCACTAACTCGGTAA 59.291 40.000 0.00 0.00 0.00 2.85
263 264 3.151554 TGTCTCACTAACTCGGTAAGCA 58.848 45.455 0.00 0.00 0.00 3.91
298 299 3.452264 TCAACATCCCTCGACTGAATCAT 59.548 43.478 0.00 0.00 0.00 2.45
299 300 4.649218 TCAACATCCCTCGACTGAATCATA 59.351 41.667 0.00 0.00 0.00 2.15
300 301 5.305386 TCAACATCCCTCGACTGAATCATAT 59.695 40.000 0.00 0.00 0.00 1.78
319 320 1.783284 TTAGCAGCAGTTCGACACAG 58.217 50.000 0.00 0.00 0.00 3.66
320 321 0.667487 TAGCAGCAGTTCGACACAGC 60.667 55.000 0.00 6.91 38.19 4.40
349 350 0.606401 CCACCAGTGGCAAGTTCGAT 60.606 55.000 9.78 0.00 44.73 3.59
367 368 2.125350 GAGTGAAGAGCCAGCCGG 60.125 66.667 0.00 0.00 0.00 6.13
377 378 3.036429 GCCAGCCGGAGTCCTTCAT 62.036 63.158 5.05 0.00 0.00 2.57
383 384 0.032678 CCGGAGTCCTTCATCCATCG 59.967 60.000 7.77 0.00 35.14 3.84
389 390 1.153107 CCTTCATCCATCGCAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
437 438 3.756677 CGAGCACACGTGTCGCAG 61.757 66.667 30.73 23.56 31.50 5.18
438 439 2.658593 GAGCACACGTGTCGCAGT 60.659 61.111 30.73 18.97 0.00 4.40
440 441 1.337817 GAGCACACGTGTCGCAGTAG 61.338 60.000 30.73 17.15 0.00 2.57
457 461 3.306166 CAGTAGAAATAACCGCACCTTCG 59.694 47.826 0.00 0.00 0.00 3.79
483 488 0.179073 CGAAGAATCATCCCCGCACT 60.179 55.000 0.00 0.00 0.00 4.40
484 489 1.068588 CGAAGAATCATCCCCGCACTA 59.931 52.381 0.00 0.00 0.00 2.74
488 493 1.689273 GAATCATCCCCGCACTAGTCT 59.311 52.381 0.00 0.00 0.00 3.24
530 535 8.261349 AGGCAAACAGAGAAGATTATCTAGAT 57.739 34.615 10.73 10.73 0.00 1.98
541 546 8.952278 AGAAGATTATCTAGATAAATCGCGTCT 58.048 33.333 25.17 21.28 36.90 4.18
563 795 0.995803 TCATCCCCGAATTGGTGGAA 59.004 50.000 0.00 0.00 39.58 3.53
570 802 2.890945 CCCGAATTGGTGGAAGAAGTTT 59.109 45.455 0.00 0.00 35.15 2.66
571 803 3.057526 CCCGAATTGGTGGAAGAAGTTTC 60.058 47.826 0.00 0.00 35.15 2.78
666 900 2.281345 GGATCAGCAGGGGCATCG 60.281 66.667 0.00 0.00 44.61 3.84
715 949 0.322546 GGTTGACCATTTCGCTCCCT 60.323 55.000 0.00 0.00 35.64 4.20
716 950 1.087501 GTTGACCATTTCGCTCCCTC 58.912 55.000 0.00 0.00 0.00 4.30
717 951 0.035439 TTGACCATTTCGCTCCCTCC 60.035 55.000 0.00 0.00 0.00 4.30
718 952 1.153147 GACCATTTCGCTCCCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
719 953 1.616628 ACCATTTCGCTCCCTCCCT 60.617 57.895 0.00 0.00 0.00 4.20
720 954 1.147153 CCATTTCGCTCCCTCCCTC 59.853 63.158 0.00 0.00 0.00 4.30
721 955 1.341156 CCATTTCGCTCCCTCCCTCT 61.341 60.000 0.00 0.00 0.00 3.69
722 956 0.105778 CATTTCGCTCCCTCCCTCTC 59.894 60.000 0.00 0.00 0.00 3.20
723 957 0.031616 ATTTCGCTCCCTCCCTCTCT 60.032 55.000 0.00 0.00 0.00 3.10
724 958 0.684805 TTTCGCTCCCTCCCTCTCTC 60.685 60.000 0.00 0.00 0.00 3.20
725 959 2.895426 TTCGCTCCCTCCCTCTCTCG 62.895 65.000 0.00 0.00 0.00 4.04
726 960 2.520741 GCTCCCTCCCTCTCTCGG 60.521 72.222 0.00 0.00 0.00 4.63
782 1016 2.365768 GTCTCCTCCCCTCCCACC 60.366 72.222 0.00 0.00 0.00 4.61
817 1051 3.316573 GAGCTGTGGACTTCCCCCG 62.317 68.421 0.00 0.00 34.29 5.73
818 1052 4.410400 GCTGTGGACTTCCCCCGG 62.410 72.222 0.00 0.00 34.29 5.73
826 1060 4.806339 CTTCCCCCGGCCCTCTCT 62.806 72.222 0.00 0.00 0.00 3.10
827 1061 4.798682 TTCCCCCGGCCCTCTCTC 62.799 72.222 0.00 0.00 0.00 3.20
832 1066 2.364317 CCGGCCCTCTCTCCAGAA 60.364 66.667 0.00 0.00 0.00 3.02
839 1089 3.078097 GCCCTCTCTCCAGAAAAGAAAC 58.922 50.000 0.00 0.00 0.00 2.78
1250 1524 1.219393 GGAAGGAGAAGCGGGACAG 59.781 63.158 0.00 0.00 0.00 3.51
1257 1531 0.618968 AGAAGCGGGACAGGAAGGAT 60.619 55.000 0.00 0.00 0.00 3.24
1258 1532 0.462759 GAAGCGGGACAGGAAGGATG 60.463 60.000 0.00 0.00 0.00 3.51
1259 1533 2.514824 GCGGGACAGGAAGGATGC 60.515 66.667 0.00 0.00 0.00 3.91
1260 1534 2.190578 CGGGACAGGAAGGATGCC 59.809 66.667 0.00 0.00 0.00 4.40
1261 1535 2.669133 CGGGACAGGAAGGATGCCA 61.669 63.158 0.00 0.00 34.43 4.92
1263 1537 1.450312 GGACAGGAAGGATGCCACG 60.450 63.158 0.00 0.00 34.43 4.94
1264 1538 2.045926 ACAGGAAGGATGCCACGC 60.046 61.111 0.00 0.00 34.43 5.34
1265 1539 2.046023 CAGGAAGGATGCCACGCA 60.046 61.111 0.00 0.00 34.43 5.24
1301 1575 4.812476 CGACCTCGGCATCGGCAA 62.812 66.667 0.00 0.00 43.71 4.52
1302 1576 3.195698 GACCTCGGCATCGGCAAC 61.196 66.667 0.00 0.00 43.71 4.17
1303 1577 3.950794 GACCTCGGCATCGGCAACA 62.951 63.158 0.00 0.00 43.71 3.33
1304 1578 2.745884 CCTCGGCATCGGCAACAA 60.746 61.111 0.00 0.00 43.71 2.83
1305 1579 2.331893 CCTCGGCATCGGCAACAAA 61.332 57.895 0.00 0.00 43.71 2.83
1306 1580 1.135315 CTCGGCATCGGCAACAAAG 59.865 57.895 0.00 0.00 43.71 2.77
1307 1581 2.179018 CGGCATCGGCAACAAAGG 59.821 61.111 0.00 0.00 43.71 3.11
1308 1582 2.573340 GGCATCGGCAACAAAGGG 59.427 61.111 0.00 0.00 43.71 3.95
1309 1583 2.573340 GCATCGGCAACAAAGGGG 59.427 61.111 0.00 0.00 40.72 4.79
1340 1616 2.384391 ATCGACGTACGTGATCCGCC 62.384 60.000 28.16 8.35 43.13 6.13
1341 1617 2.649975 GACGTACGTGATCCGCCG 60.650 66.667 28.16 11.71 41.42 6.46
1342 1618 4.183686 ACGTACGTGATCCGCCGG 62.184 66.667 22.14 0.00 41.42 6.13
1360 1636 3.333414 CCGATGCGGCGATTCATT 58.667 55.556 12.98 0.00 41.17 2.57
1361 1637 2.527671 CCGATGCGGCGATTCATTA 58.472 52.632 12.98 0.00 41.17 1.90
1362 1638 0.865111 CCGATGCGGCGATTCATTAA 59.135 50.000 12.98 0.00 41.17 1.40
1365 1641 2.474526 CGATGCGGCGATTCATTAATCC 60.475 50.000 12.98 0.00 38.66 3.01
1387 1663 7.921786 TCCTGTGAATCGAAATGTATTTTCT 57.078 32.000 0.00 0.00 41.37 2.52
1414 1700 2.553086 TGGTTGACCTAACGTGTGTTC 58.447 47.619 1.34 0.00 40.28 3.18
1415 1701 2.168936 TGGTTGACCTAACGTGTGTTCT 59.831 45.455 1.34 0.00 40.28 3.01
1416 1702 3.200483 GGTTGACCTAACGTGTGTTCTT 58.800 45.455 0.00 0.00 40.28 2.52
1417 1703 3.624410 GGTTGACCTAACGTGTGTTCTTT 59.376 43.478 0.00 0.00 40.28 2.52
1457 1747 3.239587 TCGCGTTCTTGTTGATGGATA 57.760 42.857 5.77 0.00 0.00 2.59
1612 1911 3.118555 TGCCGTATACCTAAGTTGCACAT 60.119 43.478 0.00 0.00 0.00 3.21
1620 1919 9.855021 GTATACCTAAGTTGCACATTTTTCAAT 57.145 29.630 0.00 0.00 0.00 2.57
1673 1974 6.940867 AGGAAACCAACTAAGATCCTACAAAC 59.059 38.462 0.00 0.00 35.59 2.93
1688 1994 9.657419 GATCCTACAAACCATGAAATTCAAATT 57.343 29.630 0.00 0.00 0.00 1.82
1690 1996 8.869109 TCCTACAAACCATGAAATTCAAATTCT 58.131 29.630 0.00 0.00 0.00 2.40
1945 2294 5.707764 GCCCCTTTAAATATAGAGGAAGCAG 59.292 44.000 0.00 0.00 35.82 4.24
1955 2304 9.533831 AAATATAGAGGAAGCAGAAAAGGAAAA 57.466 29.630 0.00 0.00 0.00 2.29
1956 2305 8.744568 ATATAGAGGAAGCAGAAAAGGAAAAG 57.255 34.615 0.00 0.00 0.00 2.27
1974 2323 6.600427 AGGAAAAGAAAAGGAACGTTGACTTA 59.400 34.615 5.00 0.00 30.97 2.24
2019 2368 6.528423 CGACTTATTTGACTAGTCTTCTGTGG 59.472 42.308 23.01 11.53 36.90 4.17
2021 2370 4.623932 ATTTGACTAGTCTTCTGTGGCA 57.376 40.909 23.01 0.00 0.00 4.92
2081 2432 1.539496 CGGGTGAACGAGGAGAACAAA 60.539 52.381 0.00 0.00 35.47 2.83
2664 3021 3.125573 CGCTCCTCGTCCTCGTCA 61.126 66.667 0.00 0.00 38.33 4.35
2665 3022 2.486042 GCTCCTCGTCCTCGTCAC 59.514 66.667 0.00 0.00 38.33 3.67
2672 3029 0.896479 TCGTCCTCGTCACCATCCAA 60.896 55.000 0.00 0.00 38.33 3.53
2673 3030 0.037697 CGTCCTCGTCACCATCCAAA 60.038 55.000 0.00 0.00 0.00 3.28
2691 3053 2.116827 AAAAACATGGCATGGCATGG 57.883 45.000 45.64 33.58 33.41 3.66
2708 3070 3.158648 GCATGGCATGGCATGGGT 61.159 61.111 44.47 22.76 0.00 4.51
2709 3071 1.833492 GCATGGCATGGCATGGGTA 60.833 57.895 44.47 18.86 0.00 3.69
2710 3072 1.401318 GCATGGCATGGCATGGGTAA 61.401 55.000 44.47 18.18 0.00 2.85
2724 3086 6.127026 TGGCATGGGTAATGGGTTTAATTAAC 60.127 38.462 0.00 0.00 36.71 2.01
3549 3911 3.493877 CGGCTAGCTTGATCAAGAAGATG 59.506 47.826 34.43 21.01 40.79 2.90
3776 4151 3.305608 GCAGCAGCTTTGGAGTAACAAAT 60.306 43.478 0.00 0.00 39.39 2.32
3833 4208 5.390991 GGCTTTAGTTCAGACCTTCAAATCG 60.391 44.000 0.00 0.00 0.00 3.34
3837 4212 4.561105 AGTTCAGACCTTCAAATCGAGAC 58.439 43.478 0.00 0.00 0.00 3.36
3904 4279 6.128172 CGAAGATGAAATTAACCTCAGCACTT 60.128 38.462 6.64 6.16 30.32 3.16
3948 4325 2.863704 GCCTGAATTTTGCAAAGCGTCT 60.864 45.455 12.41 0.00 0.00 4.18
4011 4388 1.274703 ATGGAGCCAGACAACCCGAT 61.275 55.000 0.00 0.00 0.00 4.18
4024 4430 0.108329 ACCCGATAAGGCGAAGTGTG 60.108 55.000 0.00 0.00 39.21 3.82
4045 4451 3.443329 TGAAGCAACTTCAGCAGACAAAA 59.557 39.130 5.94 0.00 44.27 2.44
4059 4465 6.927381 CAGCAGACAAAAAGAGGATTGAATTT 59.073 34.615 0.00 0.00 0.00 1.82
4068 4474 4.501071 AGAGGATTGAATTTGCATTGCAC 58.499 39.130 11.66 0.00 38.71 4.57
4256 4664 7.284261 AGGGTGAGAAGAAAAGAAAAGAAGAAG 59.716 37.037 0.00 0.00 0.00 2.85
4262 4670 9.847706 AGAAGAAAAGAAAAGAAGAAGAAACAC 57.152 29.630 0.00 0.00 0.00 3.32
4264 4672 8.040716 AGAAAAGAAAAGAAGAAGAAACACGA 57.959 30.769 0.00 0.00 0.00 4.35
4265 4673 7.963465 AGAAAAGAAAAGAAGAAGAAACACGAC 59.037 33.333 0.00 0.00 0.00 4.34
4266 4674 6.986904 AAGAAAAGAAGAAGAAACACGACT 57.013 33.333 0.00 0.00 0.00 4.18
4267 4675 8.488651 AAAGAAAAGAAGAAGAAACACGACTA 57.511 30.769 0.00 0.00 0.00 2.59
4268 4676 8.664211 AAGAAAAGAAGAAGAAACACGACTAT 57.336 30.769 0.00 0.00 0.00 2.12
4279 4687 7.229581 AGAAACACGACTATTTTCCTACTCT 57.770 36.000 0.00 0.00 30.82 3.24
4286 4694 5.910166 CGACTATTTTCCTACTCTCATGACG 59.090 44.000 0.00 0.00 0.00 4.35
4290 4698 4.436242 TTTCCTACTCTCATGACGTGAC 57.564 45.455 0.00 0.00 32.22 3.67
4297 4705 0.710567 CTCATGACGTGACAAGCGAC 59.289 55.000 0.00 0.00 32.22 5.19
4300 4708 0.109272 ATGACGTGACAAGCGACGAT 60.109 50.000 0.00 0.00 38.94 3.73
4407 4815 3.067320 TCACCTTCACATCTATCTGCTCG 59.933 47.826 0.00 0.00 0.00 5.03
4408 4816 2.363680 ACCTTCACATCTATCTGCTCGG 59.636 50.000 0.00 0.00 0.00 4.63
4424 4833 0.956633 TCGGGACATAGTATGCGGTC 59.043 55.000 10.16 0.70 0.00 4.79
4425 4834 0.386858 CGGGACATAGTATGCGGTCG 60.387 60.000 10.16 5.85 0.00 4.79
4438 4847 0.438830 GCGGTCGTTAGAAACTGCTG 59.561 55.000 0.00 0.00 43.07 4.41
4445 4854 3.732219 TCGTTAGAAACTGCTGTACAACG 59.268 43.478 17.75 17.75 38.96 4.10
4448 4857 5.107607 CGTTAGAAACTGCTGTACAACGATT 60.108 40.000 18.45 1.62 39.73 3.34
4449 4858 4.992381 AGAAACTGCTGTACAACGATTC 57.008 40.909 0.00 0.00 0.00 2.52
4450 4859 4.377021 AGAAACTGCTGTACAACGATTCA 58.623 39.130 0.00 0.00 0.00 2.57
4451 4860 4.997395 AGAAACTGCTGTACAACGATTCAT 59.003 37.500 0.00 0.00 0.00 2.57
4452 4861 4.928661 AACTGCTGTACAACGATTCATC 57.071 40.909 0.00 0.00 0.00 2.92
4453 4862 3.925379 ACTGCTGTACAACGATTCATCA 58.075 40.909 0.00 0.00 0.00 3.07
4454 4863 4.507710 ACTGCTGTACAACGATTCATCAT 58.492 39.130 0.00 0.00 0.00 2.45
4455 4864 4.937620 ACTGCTGTACAACGATTCATCATT 59.062 37.500 0.00 0.00 0.00 2.57
4456 4865 5.063944 ACTGCTGTACAACGATTCATCATTC 59.936 40.000 0.00 0.00 0.00 2.67
4459 4868 5.008019 GCTGTACAACGATTCATCATTCCAT 59.992 40.000 0.00 0.00 0.00 3.41
4462 4871 7.496747 TGTACAACGATTCATCATTCCATAGA 58.503 34.615 0.00 0.00 0.00 1.98
4474 4883 4.287845 TCATTCCATAGAGGGTGATCATGG 59.712 45.833 0.00 0.13 37.98 3.66
4475 4884 1.980765 TCCATAGAGGGTGATCATGGC 59.019 52.381 0.00 0.00 36.82 4.40
4476 4885 1.983691 CCATAGAGGGTGATCATGGCT 59.016 52.381 0.00 0.00 30.49 4.75
4482 4891 2.036992 GAGGGTGATCATGGCTACAGAG 59.963 54.545 0.00 0.00 0.00 3.35
4519 4928 8.884726 GTTATGACCTCAAGATAAACCTTCTTC 58.115 37.037 0.00 0.00 31.11 2.87
4625 5034 4.793216 GCATGATCGTTTTGCTCGTTAAAT 59.207 37.500 0.00 0.00 33.61 1.40
4627 5036 6.183359 GCATGATCGTTTTGCTCGTTAAATTT 60.183 34.615 0.00 0.00 33.61 1.82
4659 5068 4.284234 AGGAACTGTTTCATTCCCCAAATG 59.716 41.667 0.98 0.00 44.78 2.32
4801 5232 9.346725 CCTTCAATTTCTTGTTATGCTTAACTC 57.653 33.333 19.69 0.00 38.81 3.01
4812 5243 9.462174 TTGTTATGCTTAACTCAACTGAATTTG 57.538 29.630 19.69 0.00 38.81 2.32
4813 5244 7.594758 TGTTATGCTTAACTCAACTGAATTTGC 59.405 33.333 19.69 0.00 38.81 3.68
4814 5245 5.512753 TGCTTAACTCAACTGAATTTGCA 57.487 34.783 0.00 0.00 0.00 4.08
4815 5246 5.900425 TGCTTAACTCAACTGAATTTGCAA 58.100 33.333 0.00 0.00 0.00 4.08
4816 5247 6.514947 TGCTTAACTCAACTGAATTTGCAAT 58.485 32.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.372343 TGTTCTCTCTCTCTCTCTGCTAT 57.628 43.478 0.00 0.00 0.00 2.97
4 5 5.353956 TCGATTTGTTCTCTCTCTCTCTCTG 59.646 44.000 0.00 0.00 0.00 3.35
5 6 5.496556 TCGATTTGTTCTCTCTCTCTCTCT 58.503 41.667 0.00 0.00 0.00 3.10
6 7 5.584649 TCTCGATTTGTTCTCTCTCTCTCTC 59.415 44.000 0.00 0.00 0.00 3.20
7 8 5.496556 TCTCGATTTGTTCTCTCTCTCTCT 58.503 41.667 0.00 0.00 0.00 3.10
8 9 5.811399 TCTCGATTTGTTCTCTCTCTCTC 57.189 43.478 0.00 0.00 0.00 3.20
9 10 6.773976 AATCTCGATTTGTTCTCTCTCTCT 57.226 37.500 0.00 0.00 0.00 3.10
10 11 7.826260 AAAATCTCGATTTGTTCTCTCTCTC 57.174 36.000 5.71 0.00 40.57 3.20
35 36 2.358322 AGTTCCTTCTCCCGCAAAAA 57.642 45.000 0.00 0.00 0.00 1.94
36 37 2.358322 AAGTTCCTTCTCCCGCAAAA 57.642 45.000 0.00 0.00 0.00 2.44
37 38 2.227194 GAAAGTTCCTTCTCCCGCAAA 58.773 47.619 0.00 0.00 0.00 3.68
38 39 1.142060 TGAAAGTTCCTTCTCCCGCAA 59.858 47.619 0.00 0.00 0.00 4.85
39 40 0.762418 TGAAAGTTCCTTCTCCCGCA 59.238 50.000 0.00 0.00 0.00 5.69
40 41 2.115343 ATGAAAGTTCCTTCTCCCGC 57.885 50.000 0.00 0.00 0.00 6.13
41 42 5.880332 TGATTAATGAAAGTTCCTTCTCCCG 59.120 40.000 0.00 0.00 0.00 5.14
42 43 7.611855 TCTTGATTAATGAAAGTTCCTTCTCCC 59.388 37.037 0.00 0.00 0.00 4.30
43 44 8.567285 TCTTGATTAATGAAAGTTCCTTCTCC 57.433 34.615 0.00 0.00 0.00 3.71
44 45 9.442047 TCTCTTGATTAATGAAAGTTCCTTCTC 57.558 33.333 0.00 0.00 0.00 2.87
45 46 9.447157 CTCTCTTGATTAATGAAAGTTCCTTCT 57.553 33.333 0.00 0.00 0.00 2.85
46 47 9.442047 TCTCTCTTGATTAATGAAAGTTCCTTC 57.558 33.333 0.00 0.00 0.00 3.46
47 48 9.972106 ATCTCTCTTGATTAATGAAAGTTCCTT 57.028 29.630 0.00 0.00 0.00 3.36
48 49 9.393512 CATCTCTCTTGATTAATGAAAGTTCCT 57.606 33.333 0.00 0.00 0.00 3.36
49 50 8.127954 GCATCTCTCTTGATTAATGAAAGTTCC 58.872 37.037 0.00 0.00 0.00 3.62
50 51 8.891720 AGCATCTCTCTTGATTAATGAAAGTTC 58.108 33.333 0.00 0.00 0.00 3.01
51 52 8.804912 AGCATCTCTCTTGATTAATGAAAGTT 57.195 30.769 0.00 0.00 0.00 2.66
52 53 8.804912 AAGCATCTCTCTTGATTAATGAAAGT 57.195 30.769 0.00 0.00 0.00 2.66
54 55 9.671279 TGTAAGCATCTCTCTTGATTAATGAAA 57.329 29.630 0.00 0.00 27.84 2.69
55 56 9.842775 ATGTAAGCATCTCTCTTGATTAATGAA 57.157 29.630 0.00 0.00 27.84 2.57
56 57 9.842775 AATGTAAGCATCTCTCTTGATTAATGA 57.157 29.630 0.00 0.00 33.50 2.57
58 59 9.842775 TGAATGTAAGCATCTCTCTTGATTAAT 57.157 29.630 0.00 0.00 33.50 1.40
59 60 9.102757 GTGAATGTAAGCATCTCTCTTGATTAA 57.897 33.333 0.00 0.00 33.50 1.40
60 61 8.260114 TGTGAATGTAAGCATCTCTCTTGATTA 58.740 33.333 0.00 0.00 33.50 1.75
61 62 7.065563 GTGTGAATGTAAGCATCTCTCTTGATT 59.934 37.037 0.00 0.00 33.50 2.57
62 63 6.538021 GTGTGAATGTAAGCATCTCTCTTGAT 59.462 38.462 0.00 0.00 33.50 2.57
63 64 5.871524 GTGTGAATGTAAGCATCTCTCTTGA 59.128 40.000 0.00 0.00 33.50 3.02
64 65 5.873712 AGTGTGAATGTAAGCATCTCTCTTG 59.126 40.000 0.00 0.00 33.50 3.02
65 66 6.047511 AGTGTGAATGTAAGCATCTCTCTT 57.952 37.500 0.00 0.00 33.50 2.85
66 67 5.674052 AGTGTGAATGTAAGCATCTCTCT 57.326 39.130 0.00 0.00 33.50 3.10
67 68 5.871524 TCAAGTGTGAATGTAAGCATCTCTC 59.128 40.000 0.00 0.00 33.50 3.20
68 69 5.641209 GTCAAGTGTGAATGTAAGCATCTCT 59.359 40.000 0.00 0.00 34.87 3.10
69 70 5.641209 AGTCAAGTGTGAATGTAAGCATCTC 59.359 40.000 0.00 0.00 34.87 2.75
70 71 5.555017 AGTCAAGTGTGAATGTAAGCATCT 58.445 37.500 0.00 0.00 34.87 2.90
71 72 5.869753 AGTCAAGTGTGAATGTAAGCATC 57.130 39.130 0.00 0.00 34.87 3.91
72 73 6.183360 GCATAGTCAAGTGTGAATGTAAGCAT 60.183 38.462 0.00 0.00 34.87 3.79
73 74 5.122239 GCATAGTCAAGTGTGAATGTAAGCA 59.878 40.000 0.00 0.00 34.87 3.91
74 75 5.352569 AGCATAGTCAAGTGTGAATGTAAGC 59.647 40.000 0.00 0.00 34.87 3.09
75 76 6.974932 AGCATAGTCAAGTGTGAATGTAAG 57.025 37.500 0.00 0.00 34.87 2.34
76 77 6.535150 GCTAGCATAGTCAAGTGTGAATGTAA 59.465 38.462 10.63 0.00 41.93 2.41
77 78 6.042777 GCTAGCATAGTCAAGTGTGAATGTA 58.957 40.000 10.63 0.00 41.93 2.29
78 79 4.872691 GCTAGCATAGTCAAGTGTGAATGT 59.127 41.667 10.63 0.00 41.93 2.71
79 80 5.114780 AGCTAGCATAGTCAAGTGTGAATG 58.885 41.667 18.83 0.00 41.93 2.67
80 81 5.350504 AGCTAGCATAGTCAAGTGTGAAT 57.649 39.130 18.83 0.00 41.93 2.57
81 82 4.808414 AGCTAGCATAGTCAAGTGTGAA 57.192 40.909 18.83 0.00 41.93 3.18
82 83 5.830457 AGATAGCTAGCATAGTCAAGTGTGA 59.170 40.000 18.83 0.00 41.93 3.58
83 84 6.083098 AGATAGCTAGCATAGTCAAGTGTG 57.917 41.667 18.83 0.00 41.93 3.82
84 85 5.830457 TGAGATAGCTAGCATAGTCAAGTGT 59.170 40.000 18.83 0.00 41.93 3.55
85 86 6.324561 TGAGATAGCTAGCATAGTCAAGTG 57.675 41.667 18.83 0.00 41.93 3.16
86 87 7.537596 AATGAGATAGCTAGCATAGTCAAGT 57.462 36.000 18.83 4.55 41.93 3.16
87 88 8.190122 CCTAATGAGATAGCTAGCATAGTCAAG 58.810 40.741 18.83 9.12 41.93 3.02
88 89 7.123397 CCCTAATGAGATAGCTAGCATAGTCAA 59.877 40.741 18.83 2.63 41.93 3.18
89 90 6.605194 CCCTAATGAGATAGCTAGCATAGTCA 59.395 42.308 18.83 14.15 41.93 3.41
90 91 6.831353 TCCCTAATGAGATAGCTAGCATAGTC 59.169 42.308 18.83 8.74 41.93 2.59
91 92 6.736581 TCCCTAATGAGATAGCTAGCATAGT 58.263 40.000 18.83 1.33 41.93 2.12
92 93 7.341769 ACTTCCCTAATGAGATAGCTAGCATAG 59.658 40.741 18.83 7.75 43.09 2.23
93 94 7.185565 ACTTCCCTAATGAGATAGCTAGCATA 58.814 38.462 18.83 6.92 0.00 3.14
94 95 6.022315 ACTTCCCTAATGAGATAGCTAGCAT 58.978 40.000 18.83 8.43 0.00 3.79
95 96 5.398236 ACTTCCCTAATGAGATAGCTAGCA 58.602 41.667 18.83 3.19 0.00 3.49
96 97 5.993748 ACTTCCCTAATGAGATAGCTAGC 57.006 43.478 6.62 6.62 0.00 3.42
97 98 7.040340 TCGAAACTTCCCTAATGAGATAGCTAG 60.040 40.741 0.00 0.00 0.00 3.42
98 99 6.776116 TCGAAACTTCCCTAATGAGATAGCTA 59.224 38.462 0.00 0.00 0.00 3.32
99 100 5.598830 TCGAAACTTCCCTAATGAGATAGCT 59.401 40.000 0.00 0.00 0.00 3.32
100 101 5.844004 TCGAAACTTCCCTAATGAGATAGC 58.156 41.667 0.00 0.00 0.00 2.97
101 102 6.422400 GCTTCGAAACTTCCCTAATGAGATAG 59.578 42.308 0.00 0.00 0.00 2.08
102 103 6.281405 GCTTCGAAACTTCCCTAATGAGATA 58.719 40.000 0.00 0.00 0.00 1.98
103 104 5.119694 GCTTCGAAACTTCCCTAATGAGAT 58.880 41.667 0.00 0.00 0.00 2.75
104 105 4.504858 GCTTCGAAACTTCCCTAATGAGA 58.495 43.478 0.00 0.00 0.00 3.27
105 106 3.623510 GGCTTCGAAACTTCCCTAATGAG 59.376 47.826 0.00 0.00 0.00 2.90
106 107 3.008594 TGGCTTCGAAACTTCCCTAATGA 59.991 43.478 0.00 0.00 0.00 2.57
107 108 3.343617 TGGCTTCGAAACTTCCCTAATG 58.656 45.455 0.00 0.00 0.00 1.90
108 109 3.713826 TGGCTTCGAAACTTCCCTAAT 57.286 42.857 0.00 0.00 0.00 1.73
109 110 3.143728 GTTGGCTTCGAAACTTCCCTAA 58.856 45.455 0.00 0.00 0.00 2.69
110 111 2.105134 TGTTGGCTTCGAAACTTCCCTA 59.895 45.455 0.00 0.00 0.00 3.53
111 112 1.133915 TGTTGGCTTCGAAACTTCCCT 60.134 47.619 0.00 0.00 0.00 4.20
112 113 1.314730 TGTTGGCTTCGAAACTTCCC 58.685 50.000 0.00 0.00 0.00 3.97
113 114 2.858646 GCTTGTTGGCTTCGAAACTTCC 60.859 50.000 0.00 0.00 0.00 3.46
114 115 2.033424 AGCTTGTTGGCTTCGAAACTTC 59.967 45.455 0.00 0.00 39.86 3.01
115 116 2.024414 AGCTTGTTGGCTTCGAAACTT 58.976 42.857 0.00 0.00 39.86 2.66
116 117 1.334869 CAGCTTGTTGGCTTCGAAACT 59.665 47.619 0.00 0.00 41.00 2.66
117 118 1.065551 ACAGCTTGTTGGCTTCGAAAC 59.934 47.619 0.00 0.00 41.00 2.78
118 119 1.388547 ACAGCTTGTTGGCTTCGAAA 58.611 45.000 0.00 0.00 41.00 3.46
119 120 1.333619 GAACAGCTTGTTGGCTTCGAA 59.666 47.619 0.00 0.00 41.28 3.71
120 121 0.944386 GAACAGCTTGTTGGCTTCGA 59.056 50.000 6.31 0.00 41.28 3.71
121 122 0.384725 CGAACAGCTTGTTGGCTTCG 60.385 55.000 6.31 0.00 41.28 3.79
122 123 3.461843 CGAACAGCTTGTTGGCTTC 57.538 52.632 6.31 0.00 41.28 3.86
134 135 2.639286 GGGTGCAACAGCGAACAG 59.361 61.111 3.06 0.00 39.98 3.16
135 136 3.276091 CGGGTGCAACAGCGAACA 61.276 61.111 3.06 0.00 39.98 3.18
136 137 3.236618 GACGGGTGCAACAGCGAAC 62.237 63.158 3.06 0.00 39.98 3.95
137 138 2.970324 GACGGGTGCAACAGCGAA 60.970 61.111 3.06 0.00 39.98 4.70
138 139 4.980805 GGACGGGTGCAACAGCGA 62.981 66.667 3.06 0.00 39.98 4.93
140 141 2.813226 TATGGGACGGGTGCAACAGC 62.813 60.000 3.06 0.00 39.98 4.40
141 142 1.024579 GTATGGGACGGGTGCAACAG 61.025 60.000 3.06 0.64 39.98 3.16
142 143 1.003112 GTATGGGACGGGTGCAACA 60.003 57.895 3.06 0.00 39.98 3.33
143 144 0.606944 TTGTATGGGACGGGTGCAAC 60.607 55.000 0.00 0.00 0.00 4.17
144 145 0.322098 CTTGTATGGGACGGGTGCAA 60.322 55.000 0.00 0.00 0.00 4.08
145 146 1.298340 CTTGTATGGGACGGGTGCA 59.702 57.895 0.00 0.00 0.00 4.57
146 147 2.112815 GCTTGTATGGGACGGGTGC 61.113 63.158 0.00 0.00 0.00 5.01
147 148 0.322098 TTGCTTGTATGGGACGGGTG 60.322 55.000 0.00 0.00 0.00 4.61
148 149 0.035439 CTTGCTTGTATGGGACGGGT 60.035 55.000 0.00 0.00 0.00 5.28
149 150 0.748005 CCTTGCTTGTATGGGACGGG 60.748 60.000 0.00 0.00 0.00 5.28
150 151 0.748005 CCCTTGCTTGTATGGGACGG 60.748 60.000 4.10 0.00 42.11 4.79
151 152 0.035439 ACCCTTGCTTGTATGGGACG 60.035 55.000 14.64 0.00 42.11 4.79
152 153 1.271926 ACACCCTTGCTTGTATGGGAC 60.272 52.381 14.64 0.00 42.11 4.46
153 154 1.072266 ACACCCTTGCTTGTATGGGA 58.928 50.000 14.64 0.00 42.11 4.37
154 155 1.176527 CACACCCTTGCTTGTATGGG 58.823 55.000 7.85 7.85 44.89 4.00
155 156 1.176527 CCACACCCTTGCTTGTATGG 58.823 55.000 0.00 0.00 0.00 2.74
156 157 0.527565 GCCACACCCTTGCTTGTATG 59.472 55.000 0.00 0.00 0.00 2.39
157 158 0.405585 AGCCACACCCTTGCTTGTAT 59.594 50.000 0.00 0.00 29.17 2.29
158 159 1.003118 CTAGCCACACCCTTGCTTGTA 59.997 52.381 0.00 0.00 36.57 2.41
159 160 0.250901 CTAGCCACACCCTTGCTTGT 60.251 55.000 0.00 0.00 36.57 3.16
160 161 1.589716 GCTAGCCACACCCTTGCTTG 61.590 60.000 2.29 0.00 36.57 4.01
161 162 1.303643 GCTAGCCACACCCTTGCTT 60.304 57.895 2.29 0.00 36.57 3.91
162 163 2.352805 GCTAGCCACACCCTTGCT 59.647 61.111 2.29 0.00 39.10 3.91
163 164 2.034066 TGCTAGCCACACCCTTGC 59.966 61.111 13.29 0.00 0.00 4.01
164 165 2.042831 GCTGCTAGCCACACCCTTG 61.043 63.158 13.29 0.00 34.48 3.61
165 166 1.856539 ATGCTGCTAGCCACACCCTT 61.857 55.000 13.29 0.00 41.51 3.95
166 167 1.856539 AATGCTGCTAGCCACACCCT 61.857 55.000 13.29 0.00 41.51 4.34
167 168 0.107214 TAATGCTGCTAGCCACACCC 60.107 55.000 13.29 0.00 41.51 4.61
168 169 1.303309 CTAATGCTGCTAGCCACACC 58.697 55.000 13.29 0.00 41.51 4.16
169 170 0.659957 GCTAATGCTGCTAGCCACAC 59.340 55.000 13.29 0.00 41.51 3.82
170 171 0.252761 TGCTAATGCTGCTAGCCACA 59.747 50.000 13.29 10.86 41.51 4.17
171 172 1.266175 CATGCTAATGCTGCTAGCCAC 59.734 52.381 13.29 4.56 41.51 5.01
172 173 1.601166 CATGCTAATGCTGCTAGCCA 58.399 50.000 13.29 3.93 41.51 4.75
180 181 9.583756 GCTAAAATTAGTCGGCATGCTAATGCT 62.584 40.741 18.92 11.13 43.99 3.79
181 182 7.538594 GCTAAAATTAGTCGGCATGCTAATGC 61.539 42.308 18.92 9.15 43.90 3.56
182 183 5.853282 GCTAAAATTAGTCGGCATGCTAATG 59.147 40.000 18.92 5.56 37.79 1.90
183 184 5.765182 AGCTAAAATTAGTCGGCATGCTAAT 59.235 36.000 18.92 10.65 38.95 1.73
184 185 5.123227 AGCTAAAATTAGTCGGCATGCTAA 58.877 37.500 18.92 8.62 33.32 3.09
185 186 4.703897 AGCTAAAATTAGTCGGCATGCTA 58.296 39.130 18.92 3.12 33.32 3.49
186 187 3.545703 AGCTAAAATTAGTCGGCATGCT 58.454 40.909 18.92 0.00 33.32 3.79
187 188 3.971032 AGCTAAAATTAGTCGGCATGC 57.029 42.857 9.90 9.90 33.32 4.06
188 189 5.986135 AGTCTAGCTAAAATTAGTCGGCATG 59.014 40.000 0.00 0.00 33.32 4.06
189 190 6.163135 AGTCTAGCTAAAATTAGTCGGCAT 57.837 37.500 0.00 0.00 33.32 4.40
190 191 5.593679 AGTCTAGCTAAAATTAGTCGGCA 57.406 39.130 0.00 0.00 33.32 5.69
191 192 7.652507 ACATTAGTCTAGCTAAAATTAGTCGGC 59.347 37.037 9.65 0.00 42.35 5.54
192 193 9.530633 AACATTAGTCTAGCTAAAATTAGTCGG 57.469 33.333 9.65 0.00 42.35 4.79
198 199 9.825109 GAGAGGAACATTAGTCTAGCTAAAATT 57.175 33.333 9.65 7.68 42.35 1.82
199 200 8.982723 TGAGAGGAACATTAGTCTAGCTAAAAT 58.017 33.333 9.65 0.00 42.35 1.82
200 201 8.362464 TGAGAGGAACATTAGTCTAGCTAAAA 57.638 34.615 9.65 0.00 42.35 1.52
201 202 7.956328 TGAGAGGAACATTAGTCTAGCTAAA 57.044 36.000 9.65 0.00 42.35 1.85
260 261 2.296190 TGTTGATAGATCGCGGTATGCT 59.704 45.455 6.13 0.00 43.27 3.79
263 264 3.119101 GGGATGTTGATAGATCGCGGTAT 60.119 47.826 6.13 0.00 29.46 2.73
298 299 3.511699 CTGTGTCGAACTGCTGCTAATA 58.488 45.455 0.00 0.00 0.00 0.98
299 300 2.341257 CTGTGTCGAACTGCTGCTAAT 58.659 47.619 0.00 0.00 0.00 1.73
300 301 1.783284 CTGTGTCGAACTGCTGCTAA 58.217 50.000 0.00 0.00 0.00 3.09
319 320 1.152756 ACTGGTGGTGGAAACTGGC 60.153 57.895 0.00 0.00 0.00 4.85
320 321 2.719376 CACTGGTGGTGGAAACTGG 58.281 57.895 0.00 0.00 41.90 4.00
349 350 2.659016 CGGCTGGCTCTTCACTCA 59.341 61.111 0.00 0.00 0.00 3.41
367 368 1.863267 CTGCGATGGATGAAGGACTC 58.137 55.000 0.00 0.00 0.00 3.36
377 378 1.444672 CTGAGATGGCTGCGATGGA 59.555 57.895 0.66 0.00 0.00 3.41
383 384 0.679002 TTGGAAGCTGAGATGGCTGC 60.679 55.000 0.00 0.00 40.19 5.25
406 407 4.148891 GTGTGCTCGTTAATTGTGCTAAC 58.851 43.478 0.00 0.00 0.00 2.34
437 438 3.061697 CACGAAGGTGCGGTTATTTCTAC 59.938 47.826 0.00 0.00 37.35 2.59
438 439 3.255725 CACGAAGGTGCGGTTATTTCTA 58.744 45.455 0.00 0.00 37.35 2.10
440 441 1.129811 CCACGAAGGTGCGGTTATTTC 59.870 52.381 0.00 0.00 43.00 2.17
457 461 0.931005 GGATGATTCTTCGCGACCAC 59.069 55.000 9.15 0.00 0.00 4.16
467 472 1.689273 GACTAGTGCGGGGATGATTCT 59.311 52.381 0.00 0.00 0.00 2.40
488 493 8.185506 TGTTTGCCTAGATACGGATTTATCTA 57.814 34.615 0.00 0.00 39.21 1.98
530 535 3.613193 CGGGGATGATTAGACGCGATTTA 60.613 47.826 15.93 0.00 41.02 1.40
541 546 2.780592 TCCACCAATTCGGGGATGATTA 59.219 45.455 0.00 0.00 43.25 1.75
563 795 2.470821 CGGTCGTCAGTTGAAACTTCT 58.529 47.619 0.00 0.00 37.08 2.85
570 802 2.522436 ACCCCGGTCGTCAGTTGA 60.522 61.111 0.00 0.00 0.00 3.18
571 803 2.048503 GACCCCGGTCGTCAGTTG 60.049 66.667 12.76 0.00 35.30 3.16
817 1051 1.280457 TCTTTTCTGGAGAGAGGGCC 58.720 55.000 0.00 0.00 0.00 5.80
818 1052 3.078097 GTTTCTTTTCTGGAGAGAGGGC 58.922 50.000 0.00 0.00 0.00 5.19
820 1054 3.244249 ACGGTTTCTTTTCTGGAGAGAGG 60.244 47.826 0.00 0.00 0.00 3.69
825 1059 2.475487 GTCGACGGTTTCTTTTCTGGAG 59.525 50.000 0.00 0.00 0.00 3.86
826 1060 2.476821 GTCGACGGTTTCTTTTCTGGA 58.523 47.619 0.00 0.00 0.00 3.86
827 1061 1.191647 CGTCGACGGTTTCTTTTCTGG 59.808 52.381 29.70 0.00 35.37 3.86
1250 1524 3.499737 CGTGCGTGGCATCCTTCC 61.500 66.667 0.00 0.00 41.91 3.46
1287 1561 2.257286 CTTTGTTGCCGATGCCGAGG 62.257 60.000 0.00 0.00 38.22 4.63
1297 1571 3.680786 GTCGGCCCCTTTGTTGCC 61.681 66.667 0.00 0.00 41.85 4.52
1298 1572 3.680786 GGTCGGCCCCTTTGTTGC 61.681 66.667 0.00 0.00 0.00 4.17
1299 1573 1.971695 GAGGTCGGCCCCTTTGTTG 60.972 63.158 0.08 0.00 34.03 3.33
1300 1574 2.434774 GAGGTCGGCCCCTTTGTT 59.565 61.111 0.08 0.00 34.03 2.83
1301 1575 2.852075 TGAGGTCGGCCCCTTTGT 60.852 61.111 0.08 0.00 34.03 2.83
1302 1576 2.359975 GTGAGGTCGGCCCCTTTG 60.360 66.667 0.08 0.00 34.03 2.77
1303 1577 3.647771 GGTGAGGTCGGCCCCTTT 61.648 66.667 0.08 0.00 34.03 3.11
1304 1578 4.974438 TGGTGAGGTCGGCCCCTT 62.974 66.667 0.08 0.00 34.03 3.95
1305 1579 4.741239 ATGGTGAGGTCGGCCCCT 62.741 66.667 0.08 0.00 37.62 4.79
1306 1580 4.176752 GATGGTGAGGTCGGCCCC 62.177 72.222 0.08 0.00 34.57 5.80
1307 1581 4.530857 CGATGGTGAGGTCGGCCC 62.531 72.222 0.08 0.00 34.39 5.80
1308 1582 3.458163 TCGATGGTGAGGTCGGCC 61.458 66.667 0.00 0.00 38.34 6.13
1309 1583 2.202756 GTCGATGGTGAGGTCGGC 60.203 66.667 0.00 0.00 38.34 5.54
1343 1619 2.474526 GATTAATGAATCGCCGCATCGG 60.475 50.000 0.14 0.14 39.97 4.18
1356 1632 7.864108 ACATTTCGATTCACAGGATTAATGA 57.136 32.000 0.00 0.00 0.00 2.57
1387 1663 6.095160 ACACACGTTAGGTCAACCAAATTTAA 59.905 34.615 1.33 0.00 38.89 1.52
1396 1672 4.870221 AAAGAACACACGTTAGGTCAAC 57.130 40.909 4.99 0.00 34.75 3.18
1414 1700 2.223641 CCATCGCACATGGATCCAAAAG 60.224 50.000 20.67 14.21 41.64 2.27
1415 1701 1.750206 CCATCGCACATGGATCCAAAA 59.250 47.619 20.67 0.00 41.64 2.44
1416 1702 1.064832 TCCATCGCACATGGATCCAAA 60.065 47.619 20.67 0.00 42.81 3.28
1417 1703 0.545646 TCCATCGCACATGGATCCAA 59.454 50.000 20.67 0.22 42.81 3.53
1440 1730 4.571984 TCTGCATATCCATCAACAAGAACG 59.428 41.667 0.00 0.00 0.00 3.95
1643 1942 5.073144 AGGATCTTAGTTGGTTTCCTGTTCA 59.927 40.000 0.00 0.00 32.48 3.18
1644 1943 5.561679 AGGATCTTAGTTGGTTTCCTGTTC 58.438 41.667 0.00 0.00 32.48 3.18
1673 1974 7.972277 ACGATCTTCAGAATTTGAATTTCATGG 59.028 33.333 0.00 0.00 44.48 3.66
1688 1994 8.451908 TTCATCTGTTATAGACGATCTTCAGA 57.548 34.615 1.65 0.00 38.49 3.27
1690 1996 9.302345 GTTTTCATCTGTTATAGACGATCTTCA 57.698 33.333 1.65 0.00 38.49 3.02
1782 2102 4.700213 TGGCTAGGCTAACACATTTTCTTC 59.300 41.667 18.18 0.00 0.00 2.87
1783 2103 4.459337 GTGGCTAGGCTAACACATTTTCTT 59.541 41.667 18.18 0.00 34.16 2.52
1784 2104 4.010349 GTGGCTAGGCTAACACATTTTCT 58.990 43.478 18.18 0.00 34.16 2.52
1785 2105 3.756434 TGTGGCTAGGCTAACACATTTTC 59.244 43.478 21.11 2.70 38.76 2.29
1832 2152 2.990066 AGATCTCAAACGGCTTAGGG 57.010 50.000 0.00 0.00 0.00 3.53
1913 2252 7.093245 CCTCTATATTTAAAGGGGCTCTAGACC 60.093 44.444 0.00 0.00 44.61 3.85
1945 2294 6.809689 TCAACGTTCCTTTTCTTTTCCTTTTC 59.190 34.615 0.00 0.00 0.00 2.29
1950 2299 5.244785 AGTCAACGTTCCTTTTCTTTTCC 57.755 39.130 0.00 0.00 0.00 3.13
1955 2304 7.282450 AGTCAAATAAGTCAACGTTCCTTTTCT 59.718 33.333 13.29 0.00 0.00 2.52
1956 2305 7.415229 AGTCAAATAAGTCAACGTTCCTTTTC 58.585 34.615 13.29 0.00 0.00 2.29
2000 2349 4.623932 TGCCACAGAAGACTAGTCAAAT 57.376 40.909 24.44 10.34 0.00 2.32
2008 2357 3.498774 AAGTCATTGCCACAGAAGACT 57.501 42.857 0.00 0.00 37.90 3.24
2019 2368 1.594862 CGCTAGCTGGTAAGTCATTGC 59.405 52.381 13.93 0.00 0.00 3.56
2021 2370 1.473434 GCCGCTAGCTGGTAAGTCATT 60.473 52.381 21.34 0.00 38.99 2.57
2058 2409 4.052229 CTCCTCGTTCACCCGCGT 62.052 66.667 4.92 0.00 0.00 6.01
2081 2432 1.153745 GAGCATCGTCTTGAGCCGT 60.154 57.895 0.00 0.00 0.00 5.68
2165 2516 2.299429 ATGGCTGCTCCTCTGCTGT 61.299 57.895 0.00 0.00 39.31 4.40
2672 3029 1.951424 GCCATGCCATGCCATGTTTTT 60.951 47.619 14.98 0.00 40.72 1.94
2673 3030 0.393267 GCCATGCCATGCCATGTTTT 60.393 50.000 14.98 0.00 40.72 2.43
2676 3033 1.764454 ATGCCATGCCATGCCATGT 60.764 52.632 14.98 0.00 40.72 3.21
2688 3050 2.515979 CCATGCCATGCCATGCCAT 61.516 57.895 11.13 0.00 40.92 4.40
2689 3051 3.157949 CCATGCCATGCCATGCCA 61.158 61.111 11.13 0.00 40.92 4.92
2690 3052 3.936203 CCCATGCCATGCCATGCC 61.936 66.667 11.13 0.00 40.92 4.40
2691 3053 1.401318 TTACCCATGCCATGCCATGC 61.401 55.000 11.13 0.00 40.92 4.06
2692 3054 1.001520 CATTACCCATGCCATGCCATG 59.998 52.381 9.68 9.68 41.71 3.66
2693 3055 1.344065 CATTACCCATGCCATGCCAT 58.656 50.000 0.00 0.00 0.00 4.40
2694 3056 0.759812 CCATTACCCATGCCATGCCA 60.760 55.000 0.00 0.00 0.00 4.92
2695 3057 1.474332 CCCATTACCCATGCCATGCC 61.474 60.000 0.00 0.00 0.00 4.40
2696 3058 0.760189 ACCCATTACCCATGCCATGC 60.760 55.000 0.00 0.00 0.00 4.06
2697 3059 1.792115 AACCCATTACCCATGCCATG 58.208 50.000 0.00 0.00 0.00 3.66
2698 3060 2.566708 AAACCCATTACCCATGCCAT 57.433 45.000 0.00 0.00 0.00 4.40
2699 3061 3.474798 TTAAACCCATTACCCATGCCA 57.525 42.857 0.00 0.00 0.00 4.92
2700 3062 6.099125 AGTTAATTAAACCCATTACCCATGCC 59.901 38.462 0.00 0.00 39.03 4.40
2701 3063 6.983890 CAGTTAATTAAACCCATTACCCATGC 59.016 38.462 0.00 0.00 39.03 4.06
2702 3064 8.073467 ACAGTTAATTAAACCCATTACCCATG 57.927 34.615 0.00 0.00 39.03 3.66
2703 3065 8.673456 AACAGTTAATTAAACCCATTACCCAT 57.327 30.769 0.00 0.00 39.03 4.00
2704 3066 8.493787 AAACAGTTAATTAAACCCATTACCCA 57.506 30.769 0.00 0.00 39.03 4.51
2705 3067 8.809066 AGAAACAGTTAATTAAACCCATTACCC 58.191 33.333 0.00 0.00 39.03 3.69
2706 3068 9.634163 CAGAAACAGTTAATTAAACCCATTACC 57.366 33.333 0.00 0.00 39.03 2.85
2707 3069 9.135843 GCAGAAACAGTTAATTAAACCCATTAC 57.864 33.333 0.00 0.00 39.03 1.89
2708 3070 8.308207 GGCAGAAACAGTTAATTAAACCCATTA 58.692 33.333 0.00 0.00 39.03 1.90
2709 3071 7.158697 GGCAGAAACAGTTAATTAAACCCATT 58.841 34.615 0.00 0.00 39.03 3.16
2710 3072 6.571537 CGGCAGAAACAGTTAATTAAACCCAT 60.572 38.462 0.00 0.00 39.03 4.00
2724 3086 1.157870 AACACCGTCGGCAGAAACAG 61.158 55.000 12.28 0.00 0.00 3.16
2975 3337 2.821366 CCCGACAGCAGCATGGAC 60.821 66.667 0.00 0.00 35.86 4.02
3215 3577 2.047465 AACAGCTGCGGCAGAGAG 60.047 61.111 32.72 21.60 41.70 3.20
3427 3789 4.767255 CTCCACCTCCGGCACTGC 62.767 72.222 0.00 0.00 0.00 4.40
3428 3790 4.767255 GCTCCACCTCCGGCACTG 62.767 72.222 0.00 0.00 0.00 3.66
3549 3911 0.384353 GAAGCGAGCAAACGACCAAC 60.384 55.000 0.00 0.00 35.09 3.77
3679 4041 0.536006 CATCTCCTCCAATTCCGGCC 60.536 60.000 0.00 0.00 0.00 6.13
3776 4151 9.513906 TGTATTCTCATCAATCTACCACAAAAA 57.486 29.630 0.00 0.00 0.00 1.94
3801 4176 3.686726 GTCTGAACTAAAGCCACCTCATG 59.313 47.826 0.00 0.00 0.00 3.07
3833 4208 8.272176 CAGTTTATCTTGATTGAATAGCGTCTC 58.728 37.037 0.00 0.00 0.00 3.36
3837 4212 9.559958 AAAACAGTTTATCTTGATTGAATAGCG 57.440 29.630 0.00 0.00 0.00 4.26
3864 4239 8.585189 TTTCATCTTCGAGATAATCATCAGTG 57.415 34.615 0.00 0.00 32.12 3.66
3904 4279 0.615331 GTCTGGGATCACAGGAGCAA 59.385 55.000 24.64 1.80 38.98 3.91
3948 4325 4.678509 AAGCTGCGTCGAAATGAAAATA 57.321 36.364 0.00 0.00 0.00 1.40
4001 4378 1.287425 CTTCGCCTTATCGGGTTGTC 58.713 55.000 0.00 0.00 0.00 3.18
4011 4388 1.871039 GTTGCTTCACACTTCGCCTTA 59.129 47.619 0.00 0.00 0.00 2.69
4024 4430 3.698029 TTTGTCTGCTGAAGTTGCTTC 57.302 42.857 0.00 2.22 40.54 3.86
4045 4451 4.933400 GTGCAATGCAAATTCAATCCTCTT 59.067 37.500 10.44 0.00 41.47 2.85
4068 4474 2.522836 CTGTAGATAGCCTGCAGTGG 57.477 55.000 13.81 0.00 46.44 4.00
4256 4664 7.088905 TGAGAGTAGGAAAATAGTCGTGTTTC 58.911 38.462 0.00 0.00 31.55 2.78
4259 4667 6.377429 TCATGAGAGTAGGAAAATAGTCGTGT 59.623 38.462 0.00 0.00 31.55 4.49
4262 4670 5.910166 CGTCATGAGAGTAGGAAAATAGTCG 59.090 44.000 0.00 0.00 31.55 4.18
4264 4672 6.377429 TCACGTCATGAGAGTAGGAAAATAGT 59.623 38.462 0.00 0.00 31.91 2.12
4265 4673 6.693545 GTCACGTCATGAGAGTAGGAAAATAG 59.306 42.308 0.00 0.00 38.28 1.73
4266 4674 6.152154 TGTCACGTCATGAGAGTAGGAAAATA 59.848 38.462 0.00 0.00 38.28 1.40
4267 4675 5.047306 TGTCACGTCATGAGAGTAGGAAAAT 60.047 40.000 0.00 0.00 38.28 1.82
4268 4676 4.279922 TGTCACGTCATGAGAGTAGGAAAA 59.720 41.667 0.00 0.00 38.28 2.29
4279 4687 1.001745 CGTCGCTTGTCACGTCATGA 61.002 55.000 0.00 0.00 33.79 3.07
4286 4694 2.809181 TGACATCGTCGCTTGTCAC 58.191 52.632 20.17 4.24 45.35 3.67
4290 4698 0.723414 AAGCATGACATCGTCGCTTG 59.277 50.000 9.30 0.00 37.66 4.01
4297 4705 6.236357 CGCTATAAATACAAGCATGACATCG 58.764 40.000 0.00 0.00 35.98 3.84
4300 4708 5.056480 AGCGCTATAAATACAAGCATGACA 58.944 37.500 8.99 0.00 35.98 3.58
4407 4815 0.672342 ACGACCGCATACTATGTCCC 59.328 55.000 0.00 0.00 0.00 4.46
4408 4816 2.503920 AACGACCGCATACTATGTCC 57.496 50.000 0.00 0.00 0.00 4.02
4424 4833 3.732219 TCGTTGTACAGCAGTTTCTAACG 59.268 43.478 10.49 6.77 40.44 3.18
4425 4834 5.840940 ATCGTTGTACAGCAGTTTCTAAC 57.159 39.130 10.49 0.00 0.00 2.34
4438 4847 7.116948 CCTCTATGGAATGATGAATCGTTGTAC 59.883 40.741 2.51 0.00 36.24 2.90
4445 4854 6.119240 TCACCCTCTATGGAATGATGAATC 57.881 41.667 0.00 0.00 38.35 2.52
4448 4857 5.157395 TGATCACCCTCTATGGAATGATGA 58.843 41.667 0.00 0.00 39.79 2.92
4449 4858 5.494390 TGATCACCCTCTATGGAATGATG 57.506 43.478 0.00 0.00 39.79 3.07
4450 4859 5.045066 CCATGATCACCCTCTATGGAATGAT 60.045 44.000 0.00 1.24 41.28 2.45
4451 4860 4.287845 CCATGATCACCCTCTATGGAATGA 59.712 45.833 0.00 0.00 40.52 2.57
4452 4861 4.586884 CCATGATCACCCTCTATGGAATG 58.413 47.826 0.00 0.00 40.52 2.67
4453 4862 3.009916 GCCATGATCACCCTCTATGGAAT 59.990 47.826 12.44 0.00 40.52 3.01
4454 4863 2.373169 GCCATGATCACCCTCTATGGAA 59.627 50.000 12.44 0.00 40.52 3.53
4455 4864 1.980765 GCCATGATCACCCTCTATGGA 59.019 52.381 12.44 0.00 40.52 3.41
4456 4865 1.983691 AGCCATGATCACCCTCTATGG 59.016 52.381 0.00 0.52 40.91 2.74
4459 4868 3.117131 TCTGTAGCCATGATCACCCTCTA 60.117 47.826 0.00 0.00 0.00 2.43
4462 4871 2.045524 CTCTGTAGCCATGATCACCCT 58.954 52.381 0.00 0.00 0.00 4.34
4474 4883 4.545208 AACTTCTTCCTTCCTCTGTAGC 57.455 45.455 0.00 0.00 0.00 3.58
4475 4884 7.262048 GTCATAACTTCTTCCTTCCTCTGTAG 58.738 42.308 0.00 0.00 0.00 2.74
4476 4885 6.154706 GGTCATAACTTCTTCCTTCCTCTGTA 59.845 42.308 0.00 0.00 0.00 2.74
4482 4891 5.422214 TGAGGTCATAACTTCTTCCTTCC 57.578 43.478 0.00 0.00 32.89 3.46
4627 5036 7.039993 GGGAATGAAACAGTTCCTAGCTTAAAA 60.040 37.037 0.00 0.00 42.76 1.52
4675 5084 6.133356 TGAAACAGAAGTAAGGAATTGGGTT 58.867 36.000 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.