Multiple sequence alignment - TraesCS1D01G411300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G411300 chr1D 100.000 2801 0 0 1 2801 472559921 472562721 0.000000e+00 5173.0
1 TraesCS1D01G411300 chr1D 88.308 804 91 3 999 1802 452269953 452269153 0.000000e+00 961.0
2 TraesCS1D01G411300 chr1D 86.525 423 40 7 1 422 23401052 23401458 1.530000e-122 449.0
3 TraesCS1D01G411300 chr1D 93.651 63 4 0 2727 2789 15516948 15516886 8.260000e-16 95.3
4 TraesCS1D01G411300 chr1B 93.504 2417 84 28 434 2801 657271491 657273883 0.000000e+00 3526.0
5 TraesCS1D01G411300 chr1B 88.404 802 90 3 998 1799 622218324 622219122 0.000000e+00 963.0
6 TraesCS1D01G411300 chr1A 90.357 1763 85 31 434 2166 566563619 566565326 0.000000e+00 2235.0
7 TraesCS1D01G411300 chr1A 88.199 805 92 3 998 1802 547216601 547215800 0.000000e+00 957.0
8 TraesCS1D01G411300 chr1A 91.627 418 20 1 1 418 446215606 446215204 5.240000e-157 564.0
9 TraesCS1D01G411300 chr1A 90.465 430 27 11 2181 2606 566565484 566565903 3.150000e-154 555.0
10 TraesCS1D01G411300 chr1A 90.385 416 25 1 1 416 133187960 133187560 1.480000e-147 532.0
11 TraesCS1D01G411300 chr1A 85.472 413 45 1 1 413 24447334 24447731 1.550000e-112 416.0
12 TraesCS1D01G411300 chr5A 93.176 806 52 3 998 1803 553420888 553421690 0.000000e+00 1181.0
13 TraesCS1D01G411300 chr5A 91.045 67 5 1 2723 2788 23817526 23817592 3.840000e-14 89.8
14 TraesCS1D01G411300 chr5A 88.889 72 7 1 2723 2793 12560781 12560710 1.380000e-13 87.9
15 TraesCS1D01G411300 chr5B 95.362 733 34 0 1071 1803 532876729 532877461 0.000000e+00 1166.0
16 TraesCS1D01G411300 chr5B 87.683 820 99 2 1000 1817 638345230 638344411 0.000000e+00 953.0
17 TraesCS1D01G411300 chr5B 88.889 72 7 1 2723 2793 13922247 13922176 1.380000e-13 87.9
18 TraesCS1D01G411300 chr5D 94.816 733 38 0 1071 1803 438360047 438360779 0.000000e+00 1144.0
19 TraesCS1D01G411300 chr5D 93.062 418 14 1 1 418 448728311 448727909 5.160000e-167 597.0
20 TraesCS1D01G411300 chr3A 93.541 418 12 6 1 418 499687582 499687180 2.390000e-170 608.0
21 TraesCS1D01G411300 chr4A 91.573 356 15 4 63 418 566891440 566891780 7.020000e-131 477.0
22 TraesCS1D01G411300 chr3B 88.158 380 31 6 7 386 743816076 743815711 9.210000e-120 440.0
23 TraesCS1D01G411300 chr3B 84.123 422 51 4 1 422 773546879 773546474 7.270000e-106 394.0
24 TraesCS1D01G411300 chr3B 89.855 69 6 1 2720 2787 516636655 516636723 1.380000e-13 87.9
25 TraesCS1D01G411300 chr3B 89.855 69 6 1 2720 2787 641529720 641529788 1.380000e-13 87.9
26 TraesCS1D01G411300 chr7B 93.846 65 3 1 2723 2786 296330890 296330826 2.300000e-16 97.1
27 TraesCS1D01G411300 chr7D 92.308 65 4 1 2723 2786 604972460 604972524 1.070000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G411300 chr1D 472559921 472562721 2800 False 5173 5173 100.000 1 2801 1 chr1D.!!$F2 2800
1 TraesCS1D01G411300 chr1D 452269153 452269953 800 True 961 961 88.308 999 1802 1 chr1D.!!$R2 803
2 TraesCS1D01G411300 chr1B 657271491 657273883 2392 False 3526 3526 93.504 434 2801 1 chr1B.!!$F2 2367
3 TraesCS1D01G411300 chr1B 622218324 622219122 798 False 963 963 88.404 998 1799 1 chr1B.!!$F1 801
4 TraesCS1D01G411300 chr1A 566563619 566565903 2284 False 1395 2235 90.411 434 2606 2 chr1A.!!$F2 2172
5 TraesCS1D01G411300 chr1A 547215800 547216601 801 True 957 957 88.199 998 1802 1 chr1A.!!$R3 804
6 TraesCS1D01G411300 chr5A 553420888 553421690 802 False 1181 1181 93.176 998 1803 1 chr5A.!!$F2 805
7 TraesCS1D01G411300 chr5B 532876729 532877461 732 False 1166 1166 95.362 1071 1803 1 chr5B.!!$F1 732
8 TraesCS1D01G411300 chr5B 638344411 638345230 819 True 953 953 87.683 1000 1817 1 chr5B.!!$R2 817
9 TraesCS1D01G411300 chr5D 438360047 438360779 732 False 1144 1144 94.816 1071 1803 1 chr5D.!!$F1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 554 0.033504 TTCACAGCTTCTCGTGGGTC 59.966 55.0 2.42 0.0 33.83 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2020 1.022735 GCATGCTCTGGTTGATCCTG 58.977 55.0 11.37 0.0 37.07 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.242549 CTGACATCAGTGAGCTTAGCA 57.757 47.619 7.07 0.00 39.09 3.49
30 31 3.593096 CTGACATCAGTGAGCTTAGCAA 58.407 45.455 7.07 0.00 39.09 3.91
31 32 3.593096 TGACATCAGTGAGCTTAGCAAG 58.407 45.455 7.07 0.00 0.00 4.01
32 33 3.259123 TGACATCAGTGAGCTTAGCAAGA 59.741 43.478 7.07 0.00 0.00 3.02
33 34 4.248859 GACATCAGTGAGCTTAGCAAGAA 58.751 43.478 7.07 0.00 0.00 2.52
34 35 4.645535 ACATCAGTGAGCTTAGCAAGAAA 58.354 39.130 7.07 0.00 0.00 2.52
35 36 4.453819 ACATCAGTGAGCTTAGCAAGAAAC 59.546 41.667 7.07 0.00 0.00 2.78
36 37 4.342862 TCAGTGAGCTTAGCAAGAAACT 57.657 40.909 7.07 0.00 0.00 2.66
37 38 4.708177 TCAGTGAGCTTAGCAAGAAACTT 58.292 39.130 7.07 0.00 0.00 2.66
38 39 4.752101 TCAGTGAGCTTAGCAAGAAACTTC 59.248 41.667 7.07 0.00 0.00 3.01
39 40 4.754114 CAGTGAGCTTAGCAAGAAACTTCT 59.246 41.667 7.07 0.00 39.74 2.85
41 42 6.425114 CAGTGAGCTTAGCAAGAAACTTCTTA 59.575 38.462 7.07 0.00 45.23 2.10
42 43 6.648725 AGTGAGCTTAGCAAGAAACTTCTTAG 59.351 38.462 7.07 0.81 45.23 2.18
43 44 6.425417 GTGAGCTTAGCAAGAAACTTCTTAGT 59.575 38.462 7.07 0.00 45.23 2.24
44 45 6.425114 TGAGCTTAGCAAGAAACTTCTTAGTG 59.575 38.462 7.07 0.00 45.23 2.74
45 46 6.525629 AGCTTAGCAAGAAACTTCTTAGTGA 58.474 36.000 7.07 0.00 45.23 3.41
46 47 6.992715 AGCTTAGCAAGAAACTTCTTAGTGAA 59.007 34.615 7.07 0.00 45.23 3.18
47 48 7.041712 AGCTTAGCAAGAAACTTCTTAGTGAAC 60.042 37.037 7.07 0.00 45.23 3.18
48 49 7.254795 GCTTAGCAAGAAACTTCTTAGTGAACA 60.255 37.037 0.00 0.00 45.23 3.18
49 50 8.500753 TTAGCAAGAAACTTCTTAGTGAACAA 57.499 30.769 4.43 0.00 45.23 2.83
50 51 7.391148 AGCAAGAAACTTCTTAGTGAACAAA 57.609 32.000 4.43 0.00 45.23 2.83
51 52 7.826690 AGCAAGAAACTTCTTAGTGAACAAAA 58.173 30.769 4.43 0.00 45.23 2.44
52 53 8.470002 AGCAAGAAACTTCTTAGTGAACAAAAT 58.530 29.630 4.43 0.00 45.23 1.82
53 54 8.534778 GCAAGAAACTTCTTAGTGAACAAAATG 58.465 33.333 4.43 0.00 45.23 2.32
54 55 9.573133 CAAGAAACTTCTTAGTGAACAAAATGT 57.427 29.630 4.43 0.00 45.23 2.71
58 59 9.516314 AAACTTCTTAGTGAACAAAATGTTAGC 57.484 29.630 0.00 0.00 35.46 3.09
59 60 7.649057 ACTTCTTAGTGAACAAAATGTTAGCC 58.351 34.615 0.00 0.00 41.28 3.93
60 61 7.284489 ACTTCTTAGTGAACAAAATGTTAGCCA 59.716 33.333 0.00 0.00 41.28 4.75
61 62 7.759489 TCTTAGTGAACAAAATGTTAGCCAT 57.241 32.000 0.00 0.00 41.28 4.40
62 63 8.856153 TCTTAGTGAACAAAATGTTAGCCATA 57.144 30.769 0.00 0.00 41.28 2.74
63 64 9.461312 TCTTAGTGAACAAAATGTTAGCCATAT 57.539 29.630 0.00 0.00 41.28 1.78
81 82 8.798859 AGCCATATAATAAACAGGAATAGCTG 57.201 34.615 0.00 0.00 0.00 4.24
82 83 8.605947 AGCCATATAATAAACAGGAATAGCTGA 58.394 33.333 0.00 0.00 0.00 4.26
83 84 8.887717 GCCATATAATAAACAGGAATAGCTGAG 58.112 37.037 0.00 0.00 0.00 3.35
89 90 8.635765 AATAAACAGGAATAGCTGAGAAAACA 57.364 30.769 0.00 0.00 0.00 2.83
90 91 6.566197 AAACAGGAATAGCTGAGAAAACAG 57.434 37.500 0.00 0.00 40.43 3.16
91 92 5.489792 ACAGGAATAGCTGAGAAAACAGA 57.510 39.130 0.00 0.00 39.94 3.41
92 93 5.869579 ACAGGAATAGCTGAGAAAACAGAA 58.130 37.500 0.00 0.00 39.94 3.02
93 94 5.703130 ACAGGAATAGCTGAGAAAACAGAAC 59.297 40.000 0.00 0.00 39.94 3.01
94 95 4.932200 AGGAATAGCTGAGAAAACAGAACG 59.068 41.667 0.00 0.00 39.94 3.95
95 96 4.929808 GGAATAGCTGAGAAAACAGAACGA 59.070 41.667 0.00 0.00 39.94 3.85
96 97 5.408604 GGAATAGCTGAGAAAACAGAACGAA 59.591 40.000 0.00 0.00 39.94 3.85
97 98 6.092807 GGAATAGCTGAGAAAACAGAACGAAT 59.907 38.462 0.00 0.00 39.94 3.34
98 99 4.999751 AGCTGAGAAAACAGAACGAATC 57.000 40.909 0.00 0.00 39.94 2.52
99 100 4.380531 AGCTGAGAAAACAGAACGAATCA 58.619 39.130 0.00 0.00 39.94 2.57
100 101 4.816385 AGCTGAGAAAACAGAACGAATCAA 59.184 37.500 0.00 0.00 39.94 2.57
101 102 5.471456 AGCTGAGAAAACAGAACGAATCAAT 59.529 36.000 0.00 0.00 39.94 2.57
102 103 6.016777 AGCTGAGAAAACAGAACGAATCAATT 60.017 34.615 0.00 0.00 39.94 2.32
103 104 6.304208 GCTGAGAAAACAGAACGAATCAATTC 59.696 38.462 0.00 0.00 39.94 2.17
104 105 6.668323 TGAGAAAACAGAACGAATCAATTCC 58.332 36.000 0.00 0.00 33.28 3.01
105 106 6.262049 TGAGAAAACAGAACGAATCAATTCCA 59.738 34.615 0.00 0.00 33.28 3.53
106 107 7.038154 AGAAAACAGAACGAATCAATTCCAA 57.962 32.000 0.00 0.00 33.28 3.53
107 108 6.918022 AGAAAACAGAACGAATCAATTCCAAC 59.082 34.615 0.00 0.00 33.28 3.77
108 109 4.766404 ACAGAACGAATCAATTCCAACC 57.234 40.909 0.00 0.00 33.28 3.77
109 110 4.398319 ACAGAACGAATCAATTCCAACCT 58.602 39.130 0.00 0.00 33.28 3.50
110 111 5.556915 ACAGAACGAATCAATTCCAACCTA 58.443 37.500 0.00 0.00 33.28 3.08
111 112 5.643777 ACAGAACGAATCAATTCCAACCTAG 59.356 40.000 0.00 0.00 33.28 3.02
112 113 4.636206 AGAACGAATCAATTCCAACCTAGC 59.364 41.667 0.00 0.00 33.28 3.42
113 114 3.950397 ACGAATCAATTCCAACCTAGCA 58.050 40.909 0.00 0.00 33.28 3.49
114 115 3.941483 ACGAATCAATTCCAACCTAGCAG 59.059 43.478 0.00 0.00 33.28 4.24
115 116 3.242870 CGAATCAATTCCAACCTAGCAGC 60.243 47.826 0.00 0.00 33.28 5.25
116 117 2.877097 TCAATTCCAACCTAGCAGCA 57.123 45.000 0.00 0.00 0.00 4.41
117 118 3.370840 TCAATTCCAACCTAGCAGCAT 57.629 42.857 0.00 0.00 0.00 3.79
118 119 3.018856 TCAATTCCAACCTAGCAGCATG 58.981 45.455 0.00 0.00 40.87 4.06
119 120 3.018856 CAATTCCAACCTAGCAGCATGA 58.981 45.455 0.00 0.00 39.69 3.07
120 121 2.408271 TTCCAACCTAGCAGCATGAG 57.592 50.000 0.00 0.00 39.69 2.90
121 122 1.571955 TCCAACCTAGCAGCATGAGA 58.428 50.000 0.00 0.00 39.69 3.27
122 123 1.908619 TCCAACCTAGCAGCATGAGAA 59.091 47.619 0.00 0.00 39.69 2.87
123 124 2.305635 TCCAACCTAGCAGCATGAGAAA 59.694 45.455 0.00 0.00 39.69 2.52
124 125 2.681848 CCAACCTAGCAGCATGAGAAAG 59.318 50.000 0.00 0.00 39.69 2.62
125 126 2.035530 ACCTAGCAGCATGAGAAAGC 57.964 50.000 0.00 0.00 39.69 3.51
126 127 1.280133 ACCTAGCAGCATGAGAAAGCA 59.720 47.619 0.00 0.00 39.69 3.91
127 128 2.092538 ACCTAGCAGCATGAGAAAGCAT 60.093 45.455 0.00 0.00 39.69 3.79
128 129 3.135348 ACCTAGCAGCATGAGAAAGCATA 59.865 43.478 0.00 0.00 39.69 3.14
129 130 4.202440 ACCTAGCAGCATGAGAAAGCATAT 60.202 41.667 0.00 0.00 39.69 1.78
130 131 4.760715 CCTAGCAGCATGAGAAAGCATATT 59.239 41.667 0.00 0.00 39.69 1.28
131 132 4.569761 AGCAGCATGAGAAAGCATATTG 57.430 40.909 0.00 0.00 39.69 1.90
132 133 3.318275 AGCAGCATGAGAAAGCATATTGG 59.682 43.478 0.00 0.00 39.69 3.16
133 134 3.639538 CAGCATGAGAAAGCATATTGGC 58.360 45.455 0.00 0.00 39.69 4.52
134 135 3.318275 CAGCATGAGAAAGCATATTGGCT 59.682 43.478 0.00 0.00 43.21 4.75
173 174 8.850454 GTTTATTCTTAAACTTGTCAAGCACA 57.150 30.769 12.66 0.00 42.53 4.57
174 175 9.296400 GTTTATTCTTAAACTTGTCAAGCACAA 57.704 29.630 12.66 3.29 42.53 3.33
175 176 9.862371 TTTATTCTTAAACTTGTCAAGCACAAA 57.138 25.926 12.66 1.97 44.71 2.83
176 177 7.992180 ATTCTTAAACTTGTCAAGCACAAAG 57.008 32.000 12.66 10.77 44.71 2.77
177 178 6.509418 TCTTAAACTTGTCAAGCACAAAGT 57.491 33.333 12.66 0.00 44.71 2.66
178 179 6.919721 TCTTAAACTTGTCAAGCACAAAGTT 58.080 32.000 12.66 0.00 44.71 2.66
179 180 8.046294 TCTTAAACTTGTCAAGCACAAAGTTA 57.954 30.769 12.66 0.00 44.71 2.24
180 181 8.682710 TCTTAAACTTGTCAAGCACAAAGTTAT 58.317 29.630 12.66 0.00 44.71 1.89
181 182 9.944663 CTTAAACTTGTCAAGCACAAAGTTATA 57.055 29.630 12.66 0.00 44.71 0.98
183 184 8.856490 AAACTTGTCAAGCACAAAGTTATAAG 57.144 30.769 12.66 0.00 44.71 1.73
184 185 6.438763 ACTTGTCAAGCACAAAGTTATAAGC 58.561 36.000 12.66 0.00 44.71 3.09
185 186 6.039270 ACTTGTCAAGCACAAAGTTATAAGCA 59.961 34.615 12.66 0.00 44.71 3.91
186 187 6.384258 TGTCAAGCACAAAGTTATAAGCAA 57.616 33.333 0.00 0.00 29.30 3.91
187 188 6.205784 TGTCAAGCACAAAGTTATAAGCAAC 58.794 36.000 0.00 0.00 29.30 4.17
188 189 6.183360 TGTCAAGCACAAAGTTATAAGCAACA 60.183 34.615 0.00 0.00 29.30 3.33
189 190 6.142320 GTCAAGCACAAAGTTATAAGCAACAC 59.858 38.462 0.00 0.00 0.00 3.32
190 191 6.039270 TCAAGCACAAAGTTATAAGCAACACT 59.961 34.615 0.00 0.00 0.00 3.55
191 192 6.391227 AGCACAAAGTTATAAGCAACACTT 57.609 33.333 0.00 0.00 42.76 3.16
192 193 6.438763 AGCACAAAGTTATAAGCAACACTTC 58.561 36.000 0.00 0.00 39.97 3.01
193 194 6.263168 AGCACAAAGTTATAAGCAACACTTCT 59.737 34.615 0.00 0.00 39.97 2.85
194 195 7.444183 AGCACAAAGTTATAAGCAACACTTCTA 59.556 33.333 0.00 0.00 39.97 2.10
195 196 8.237267 GCACAAAGTTATAAGCAACACTTCTAT 58.763 33.333 0.00 0.00 39.97 1.98
203 204 9.884636 TTATAAGCAACACTTCTATTCTTAGCA 57.115 29.630 0.00 0.00 39.97 3.49
204 205 6.734104 AAGCAACACTTCTATTCTTAGCAG 57.266 37.500 0.00 0.00 30.77 4.24
205 206 5.181748 AGCAACACTTCTATTCTTAGCAGG 58.818 41.667 0.00 0.00 0.00 4.85
206 207 5.046304 AGCAACACTTCTATTCTTAGCAGGA 60.046 40.000 0.00 0.00 0.00 3.86
207 208 5.643777 GCAACACTTCTATTCTTAGCAGGAA 59.356 40.000 0.00 0.00 0.00 3.36
208 209 6.183360 GCAACACTTCTATTCTTAGCAGGAAG 60.183 42.308 0.00 0.00 37.00 3.46
209 210 6.859112 ACACTTCTATTCTTAGCAGGAAGA 57.141 37.500 0.00 0.00 35.55 2.87
210 211 7.246171 ACACTTCTATTCTTAGCAGGAAGAA 57.754 36.000 9.92 9.92 46.63 2.52
218 219 6.620877 TTCTTAGCAGGAAGAATAAGTGGA 57.379 37.500 4.80 0.00 39.87 4.02
219 220 6.814954 TCTTAGCAGGAAGAATAAGTGGAT 57.185 37.500 0.00 0.00 32.46 3.41
220 221 6.586344 TCTTAGCAGGAAGAATAAGTGGATG 58.414 40.000 0.00 0.00 32.46 3.51
221 222 6.384015 TCTTAGCAGGAAGAATAAGTGGATGA 59.616 38.462 0.00 0.00 32.46 2.92
222 223 4.775236 AGCAGGAAGAATAAGTGGATGAC 58.225 43.478 0.00 0.00 0.00 3.06
223 224 3.879892 GCAGGAAGAATAAGTGGATGACC 59.120 47.826 0.00 0.00 0.00 4.02
224 225 4.626287 GCAGGAAGAATAAGTGGATGACCA 60.626 45.833 0.00 0.00 44.76 4.02
234 235 1.667595 TGGATGACCAAGATGGGTGA 58.332 50.000 0.87 0.00 43.37 4.02
235 236 1.991813 TGGATGACCAAGATGGGTGAA 59.008 47.619 0.87 0.00 43.37 3.18
236 237 2.378208 TGGATGACCAAGATGGGTGAAA 59.622 45.455 0.87 0.00 43.37 2.69
237 238 3.011595 TGGATGACCAAGATGGGTGAAAT 59.988 43.478 0.87 0.00 43.37 2.17
238 239 4.026052 GGATGACCAAGATGGGTGAAATT 58.974 43.478 0.87 0.00 43.37 1.82
239 240 5.200483 GGATGACCAAGATGGGTGAAATTA 58.800 41.667 0.87 0.00 43.37 1.40
240 241 5.067805 GGATGACCAAGATGGGTGAAATTAC 59.932 44.000 0.87 0.00 43.37 1.89
241 242 5.255397 TGACCAAGATGGGTGAAATTACT 57.745 39.130 0.87 0.00 43.37 2.24
242 243 6.381498 TGACCAAGATGGGTGAAATTACTA 57.619 37.500 0.87 0.00 43.37 1.82
243 244 6.969043 TGACCAAGATGGGTGAAATTACTAT 58.031 36.000 0.87 0.00 43.37 2.12
244 245 7.054124 TGACCAAGATGGGTGAAATTACTATC 58.946 38.462 0.87 0.00 43.37 2.08
245 246 6.365520 ACCAAGATGGGTGAAATTACTATCC 58.634 40.000 0.87 0.00 43.37 2.59
246 247 6.069088 ACCAAGATGGGTGAAATTACTATCCA 60.069 38.462 0.87 0.00 43.37 3.41
247 248 6.833416 CCAAGATGGGTGAAATTACTATCCAA 59.167 38.462 0.00 0.00 32.67 3.53
248 249 7.341769 CCAAGATGGGTGAAATTACTATCCAAA 59.658 37.037 0.00 0.00 32.67 3.28
249 250 8.917088 CAAGATGGGTGAAATTACTATCCAAAT 58.083 33.333 0.00 0.00 0.00 2.32
250 251 9.492730 AAGATGGGTGAAATTACTATCCAAATT 57.507 29.630 0.00 0.00 0.00 1.82
251 252 9.492730 AGATGGGTGAAATTACTATCCAAATTT 57.507 29.630 0.00 0.00 37.85 1.82
252 253 9.533253 GATGGGTGAAATTACTATCCAAATTTG 57.467 33.333 11.40 11.40 35.87 2.32
253 254 8.657387 TGGGTGAAATTACTATCCAAATTTGA 57.343 30.769 19.86 6.29 35.87 2.69
254 255 9.094578 TGGGTGAAATTACTATCCAAATTTGAA 57.905 29.630 19.86 0.00 35.87 2.69
255 256 9.936759 GGGTGAAATTACTATCCAAATTTGAAA 57.063 29.630 19.86 7.65 35.87 2.69
289 290 8.614469 AATTGCTTAATCTCCTGAATAGTAGC 57.386 34.615 0.00 0.00 0.00 3.58
290 291 6.985653 TGCTTAATCTCCTGAATAGTAGCT 57.014 37.500 0.00 0.00 0.00 3.32
291 292 7.366847 TGCTTAATCTCCTGAATAGTAGCTT 57.633 36.000 0.00 0.00 0.00 3.74
292 293 7.212976 TGCTTAATCTCCTGAATAGTAGCTTG 58.787 38.462 0.00 0.00 0.00 4.01
293 294 7.069950 TGCTTAATCTCCTGAATAGTAGCTTGA 59.930 37.037 0.00 0.00 0.00 3.02
294 295 7.383843 GCTTAATCTCCTGAATAGTAGCTTGAC 59.616 40.741 0.00 0.00 0.00 3.18
295 296 8.540507 TTAATCTCCTGAATAGTAGCTTGACT 57.459 34.615 0.00 0.00 0.00 3.41
296 297 9.642343 TTAATCTCCTGAATAGTAGCTTGACTA 57.358 33.333 0.00 0.00 36.38 2.59
297 298 8.540507 AATCTCCTGAATAGTAGCTTGACTAA 57.459 34.615 0.00 0.00 35.58 2.24
298 299 7.336161 TCTCCTGAATAGTAGCTTGACTAAC 57.664 40.000 0.00 0.00 35.58 2.34
299 300 6.890268 TCTCCTGAATAGTAGCTTGACTAACA 59.110 38.462 0.00 0.00 35.58 2.41
300 301 7.561722 TCTCCTGAATAGTAGCTTGACTAACAT 59.438 37.037 0.00 0.00 35.58 2.71
301 302 7.492524 TCCTGAATAGTAGCTTGACTAACATG 58.507 38.462 0.00 0.00 35.58 3.21
302 303 7.342026 TCCTGAATAGTAGCTTGACTAACATGA 59.658 37.037 0.00 0.65 35.58 3.07
303 304 7.651304 CCTGAATAGTAGCTTGACTAACATGAG 59.349 40.741 0.00 0.00 35.58 2.90
304 305 8.293699 TGAATAGTAGCTTGACTAACATGAGA 57.706 34.615 0.00 0.00 35.58 3.27
305 306 8.749354 TGAATAGTAGCTTGACTAACATGAGAA 58.251 33.333 0.00 0.00 35.58 2.87
306 307 8.934507 AATAGTAGCTTGACTAACATGAGAAC 57.065 34.615 0.00 0.00 35.58 3.01
307 308 6.597832 AGTAGCTTGACTAACATGAGAACT 57.402 37.500 0.00 0.00 30.90 3.01
308 309 7.704578 AGTAGCTTGACTAACATGAGAACTA 57.295 36.000 0.00 0.00 30.90 2.24
309 310 8.123639 AGTAGCTTGACTAACATGAGAACTAA 57.876 34.615 0.00 0.00 30.90 2.24
310 311 8.585881 AGTAGCTTGACTAACATGAGAACTAAA 58.414 33.333 0.00 0.00 30.90 1.85
311 312 9.204570 GTAGCTTGACTAACATGAGAACTAAAA 57.795 33.333 0.00 0.00 30.90 1.52
312 313 8.677148 AGCTTGACTAACATGAGAACTAAAAA 57.323 30.769 0.00 0.00 0.00 1.94
313 314 8.778358 AGCTTGACTAACATGAGAACTAAAAAG 58.222 33.333 0.00 0.00 0.00 2.27
314 315 8.774586 GCTTGACTAACATGAGAACTAAAAAGA 58.225 33.333 0.00 0.00 0.00 2.52
317 318 9.996554 TGACTAACATGAGAACTAAAAAGATGA 57.003 29.630 0.00 0.00 0.00 2.92
322 323 9.566432 AACATGAGAACTAAAAAGATGAGAACT 57.434 29.630 0.00 0.00 0.00 3.01
334 335 9.481340 AAAAAGATGAGAACTAAAAAGAATGGC 57.519 29.630 0.00 0.00 0.00 4.40
335 336 7.765695 AAGATGAGAACTAAAAAGAATGGCA 57.234 32.000 0.00 0.00 0.00 4.92
336 337 7.388460 AGATGAGAACTAAAAAGAATGGCAG 57.612 36.000 0.00 0.00 0.00 4.85
337 338 7.170965 AGATGAGAACTAAAAAGAATGGCAGA 58.829 34.615 0.00 0.00 0.00 4.26
338 339 7.833183 AGATGAGAACTAAAAAGAATGGCAGAT 59.167 33.333 0.00 0.00 0.00 2.90
339 340 7.765695 TGAGAACTAAAAAGAATGGCAGATT 57.234 32.000 0.00 0.00 0.00 2.40
340 341 8.181904 TGAGAACTAAAAAGAATGGCAGATTT 57.818 30.769 0.00 0.00 0.00 2.17
341 342 9.295825 TGAGAACTAAAAAGAATGGCAGATTTA 57.704 29.630 0.00 0.00 0.00 1.40
342 343 9.780413 GAGAACTAAAAAGAATGGCAGATTTAG 57.220 33.333 13.80 13.80 36.76 1.85
343 344 8.246871 AGAACTAAAAAGAATGGCAGATTTAGC 58.753 33.333 14.66 0.00 35.03 3.09
351 352 2.947448 GGCAGATTTAGCCCAGTTTG 57.053 50.000 0.00 0.00 46.50 2.93
352 353 1.478105 GGCAGATTTAGCCCAGTTTGG 59.522 52.381 0.00 0.00 46.50 3.28
353 354 2.446435 GCAGATTTAGCCCAGTTTGGA 58.554 47.619 0.00 0.00 40.96 3.53
354 355 2.424956 GCAGATTTAGCCCAGTTTGGAG 59.575 50.000 0.00 0.00 40.96 3.86
355 356 3.690460 CAGATTTAGCCCAGTTTGGAGT 58.310 45.455 0.00 0.00 40.96 3.85
356 357 4.082125 CAGATTTAGCCCAGTTTGGAGTT 58.918 43.478 0.00 0.00 40.96 3.01
357 358 4.524328 CAGATTTAGCCCAGTTTGGAGTTT 59.476 41.667 0.00 0.00 40.96 2.66
358 359 4.524328 AGATTTAGCCCAGTTTGGAGTTTG 59.476 41.667 0.00 0.00 40.96 2.93
359 360 3.586470 TTAGCCCAGTTTGGAGTTTGA 57.414 42.857 0.00 0.00 40.96 2.69
360 361 1.692411 AGCCCAGTTTGGAGTTTGAC 58.308 50.000 0.00 0.00 40.96 3.18
361 362 0.673985 GCCCAGTTTGGAGTTTGACC 59.326 55.000 0.00 0.00 40.96 4.02
362 363 2.026905 GCCCAGTTTGGAGTTTGACCA 61.027 52.381 0.00 0.00 40.96 4.02
363 364 1.956477 CCCAGTTTGGAGTTTGACCAG 59.044 52.381 0.00 0.00 40.96 4.00
364 365 2.422803 CCCAGTTTGGAGTTTGACCAGA 60.423 50.000 0.00 0.00 40.96 3.86
365 366 2.880890 CCAGTTTGGAGTTTGACCAGAG 59.119 50.000 0.00 0.00 40.96 3.35
366 367 3.433598 CCAGTTTGGAGTTTGACCAGAGA 60.434 47.826 0.00 0.00 40.96 3.10
367 368 4.392940 CAGTTTGGAGTTTGACCAGAGAT 58.607 43.478 0.00 0.00 38.70 2.75
368 369 5.513094 CCAGTTTGGAGTTTGACCAGAGATA 60.513 44.000 0.00 0.00 40.96 1.98
369 370 5.641209 CAGTTTGGAGTTTGACCAGAGATAG 59.359 44.000 0.00 0.00 38.70 2.08
370 371 5.544176 AGTTTGGAGTTTGACCAGAGATAGA 59.456 40.000 0.00 0.00 38.70 1.98
371 372 6.043243 AGTTTGGAGTTTGACCAGAGATAGAA 59.957 38.462 0.00 0.00 38.70 2.10
372 373 5.407407 TGGAGTTTGACCAGAGATAGAAC 57.593 43.478 0.00 0.00 33.22 3.01
373 374 4.838423 TGGAGTTTGACCAGAGATAGAACA 59.162 41.667 0.00 0.00 33.22 3.18
374 375 5.047021 TGGAGTTTGACCAGAGATAGAACAG 60.047 44.000 0.00 0.00 33.22 3.16
375 376 5.186021 GGAGTTTGACCAGAGATAGAACAGA 59.814 44.000 0.00 0.00 0.00 3.41
376 377 6.295349 GGAGTTTGACCAGAGATAGAACAGAA 60.295 42.308 0.00 0.00 0.00 3.02
377 378 7.067496 AGTTTGACCAGAGATAGAACAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
378 379 7.684529 AGTTTGACCAGAGATAGAACAGAAAT 58.315 34.615 0.00 0.00 0.00 2.17
379 380 7.605691 AGTTTGACCAGAGATAGAACAGAAATG 59.394 37.037 0.00 0.00 0.00 2.32
380 381 6.857437 TGACCAGAGATAGAACAGAAATGA 57.143 37.500 0.00 0.00 0.00 2.57
381 382 7.429374 TGACCAGAGATAGAACAGAAATGAT 57.571 36.000 0.00 0.00 0.00 2.45
382 383 7.270779 TGACCAGAGATAGAACAGAAATGATG 58.729 38.462 0.00 0.00 0.00 3.07
383 384 6.590068 ACCAGAGATAGAACAGAAATGATGG 58.410 40.000 0.00 0.00 0.00 3.51
384 385 6.385176 ACCAGAGATAGAACAGAAATGATGGA 59.615 38.462 0.00 0.00 0.00 3.41
385 386 7.072202 ACCAGAGATAGAACAGAAATGATGGAT 59.928 37.037 0.00 0.00 0.00 3.41
386 387 7.388224 CCAGAGATAGAACAGAAATGATGGATG 59.612 40.741 0.00 0.00 0.00 3.51
387 388 8.148999 CAGAGATAGAACAGAAATGATGGATGA 58.851 37.037 0.00 0.00 0.00 2.92
388 389 8.369424 AGAGATAGAACAGAAATGATGGATGAG 58.631 37.037 0.00 0.00 0.00 2.90
389 390 8.260099 AGATAGAACAGAAATGATGGATGAGA 57.740 34.615 0.00 0.00 0.00 3.27
390 391 8.882282 AGATAGAACAGAAATGATGGATGAGAT 58.118 33.333 0.00 0.00 0.00 2.75
391 392 8.850007 ATAGAACAGAAATGATGGATGAGATG 57.150 34.615 0.00 0.00 0.00 2.90
392 393 6.896883 AGAACAGAAATGATGGATGAGATGA 58.103 36.000 0.00 0.00 0.00 2.92
393 394 6.993308 AGAACAGAAATGATGGATGAGATGAG 59.007 38.462 0.00 0.00 0.00 2.90
394 395 5.064558 ACAGAAATGATGGATGAGATGAGC 58.935 41.667 0.00 0.00 0.00 4.26
395 396 4.456222 CAGAAATGATGGATGAGATGAGCC 59.544 45.833 0.00 0.00 0.00 4.70
396 397 4.104261 AGAAATGATGGATGAGATGAGCCA 59.896 41.667 0.00 0.00 35.41 4.75
397 398 4.659529 AATGATGGATGAGATGAGCCAT 57.340 40.909 0.00 0.00 44.97 4.40
398 399 5.774102 AATGATGGATGAGATGAGCCATA 57.226 39.130 0.00 0.00 42.30 2.74
399 400 4.820894 TGATGGATGAGATGAGCCATAG 57.179 45.455 0.00 0.00 42.30 2.23
400 401 4.422984 TGATGGATGAGATGAGCCATAGA 58.577 43.478 0.00 0.00 42.30 1.98
401 402 4.842380 TGATGGATGAGATGAGCCATAGAA 59.158 41.667 0.00 0.00 42.30 2.10
402 403 5.487845 TGATGGATGAGATGAGCCATAGAAT 59.512 40.000 0.00 0.00 42.30 2.40
403 404 5.837770 TGGATGAGATGAGCCATAGAATT 57.162 39.130 0.00 0.00 0.00 2.17
404 405 6.196918 TGGATGAGATGAGCCATAGAATTT 57.803 37.500 0.00 0.00 0.00 1.82
405 406 6.002082 TGGATGAGATGAGCCATAGAATTTG 58.998 40.000 0.00 0.00 0.00 2.32
406 407 5.106237 GGATGAGATGAGCCATAGAATTTGC 60.106 44.000 0.00 0.00 0.00 3.68
407 408 5.045012 TGAGATGAGCCATAGAATTTGCT 57.955 39.130 0.00 0.00 36.62 3.91
408 409 5.443283 TGAGATGAGCCATAGAATTTGCTT 58.557 37.500 0.00 0.00 33.41 3.91
409 410 5.530171 TGAGATGAGCCATAGAATTTGCTTC 59.470 40.000 0.00 0.00 33.41 3.86
410 411 4.826183 AGATGAGCCATAGAATTTGCTTCC 59.174 41.667 0.00 0.00 34.11 3.46
411 412 4.240881 TGAGCCATAGAATTTGCTTCCT 57.759 40.909 0.00 0.00 34.11 3.36
412 413 3.949754 TGAGCCATAGAATTTGCTTCCTG 59.050 43.478 0.00 0.00 34.11 3.86
413 414 4.202441 GAGCCATAGAATTTGCTTCCTGA 58.798 43.478 0.00 0.00 34.11 3.86
414 415 4.603131 AGCCATAGAATTTGCTTCCTGAA 58.397 39.130 0.00 0.00 34.11 3.02
415 416 4.400567 AGCCATAGAATTTGCTTCCTGAAC 59.599 41.667 0.00 0.00 34.11 3.18
416 417 4.158394 GCCATAGAATTTGCTTCCTGAACA 59.842 41.667 0.00 0.00 34.11 3.18
417 418 5.678107 GCCATAGAATTTGCTTCCTGAACAG 60.678 44.000 0.00 0.00 34.11 3.16
418 419 5.649395 CCATAGAATTTGCTTCCTGAACAGA 59.351 40.000 3.19 0.00 34.11 3.41
419 420 6.320672 CCATAGAATTTGCTTCCTGAACAGAT 59.679 38.462 3.19 0.00 34.11 2.90
420 421 5.640189 AGAATTTGCTTCCTGAACAGATG 57.360 39.130 3.19 0.00 34.11 2.90
421 422 4.461781 AGAATTTGCTTCCTGAACAGATGG 59.538 41.667 3.19 0.00 34.11 3.51
422 423 3.507162 TTTGCTTCCTGAACAGATGGA 57.493 42.857 3.19 0.00 0.00 3.41
423 424 3.726557 TTGCTTCCTGAACAGATGGAT 57.273 42.857 3.19 0.00 0.00 3.41
424 425 4.842531 TTGCTTCCTGAACAGATGGATA 57.157 40.909 3.19 0.00 0.00 2.59
425 426 4.142609 TGCTTCCTGAACAGATGGATAC 57.857 45.455 3.19 0.00 0.00 2.24
426 427 3.118261 TGCTTCCTGAACAGATGGATACC 60.118 47.826 3.19 0.00 0.00 2.73
427 428 3.118261 GCTTCCTGAACAGATGGATACCA 60.118 47.826 3.19 0.00 38.19 3.25
428 429 4.446371 CTTCCTGAACAGATGGATACCAC 58.554 47.826 3.19 0.00 35.80 4.16
429 430 3.724478 TCCTGAACAGATGGATACCACT 58.276 45.455 3.19 0.00 35.80 4.00
430 431 3.452264 TCCTGAACAGATGGATACCACTG 59.548 47.826 3.19 14.09 35.80 3.66
431 432 3.452264 CCTGAACAGATGGATACCACTGA 59.548 47.826 19.07 4.83 35.80 3.41
432 433 4.442612 CCTGAACAGATGGATACCACTGAG 60.443 50.000 19.07 10.85 35.80 3.35
436 437 4.357325 ACAGATGGATACCACTGAGAAGT 58.643 43.478 19.07 0.00 35.80 3.01
521 522 0.256752 CATCTGCCATCCCCTTCACA 59.743 55.000 0.00 0.00 0.00 3.58
547 548 3.120991 CCTACGTTTTTCACAGCTTCTCG 60.121 47.826 0.00 0.00 0.00 4.04
548 549 2.277084 ACGTTTTTCACAGCTTCTCGT 58.723 42.857 0.00 0.00 0.00 4.18
549 550 2.030457 ACGTTTTTCACAGCTTCTCGTG 59.970 45.455 0.00 0.00 34.34 4.35
550 551 2.599848 CGTTTTTCACAGCTTCTCGTGG 60.600 50.000 2.42 0.00 33.83 4.94
551 552 1.593196 TTTTCACAGCTTCTCGTGGG 58.407 50.000 2.42 0.00 33.83 4.61
553 554 0.033504 TTCACAGCTTCTCGTGGGTC 59.966 55.000 2.42 0.00 33.83 4.46
631 633 3.845178 TGTGAAATTATCAGCGACGAGT 58.155 40.909 0.00 0.00 39.19 4.18
658 660 0.391793 GCCAAGTGGAGTGAGTAGCC 60.392 60.000 0.18 0.00 37.39 3.93
661 674 1.258445 AAGTGGAGTGAGTAGCCGGG 61.258 60.000 2.18 0.00 0.00 5.73
687 700 2.418746 CCCGTGATCTGAAGAAATCCGT 60.419 50.000 0.00 0.00 0.00 4.69
706 719 0.034380 TGGAAAAACCCACGACCACA 60.034 50.000 0.00 0.00 38.00 4.17
732 746 3.443045 CACAGCACCCAATCGCCC 61.443 66.667 0.00 0.00 0.00 6.13
737 751 2.035626 CACCCAATCGCCCAACCT 59.964 61.111 0.00 0.00 0.00 3.50
770 784 0.462759 GAGCCATAGCCACACCTGTC 60.463 60.000 0.00 0.00 41.25 3.51
820 838 0.603065 CTCATCCGCGATATCCACCA 59.397 55.000 8.23 0.00 0.00 4.17
902 921 1.147600 CCCGCCGGGTTAAATAGCT 59.852 57.895 15.86 0.00 38.25 3.32
956 975 3.252284 CCACCACAGCCCCACTCT 61.252 66.667 0.00 0.00 0.00 3.24
957 976 2.348998 CACCACAGCCCCACTCTC 59.651 66.667 0.00 0.00 0.00 3.20
968 987 1.510383 CCACTCTCAGAGAGCACGG 59.490 63.158 25.20 19.01 46.12 4.94
971 990 1.302383 ACTCTCAGAGAGCACGGACG 61.302 60.000 25.20 2.63 46.12 4.79
989 1008 4.039357 CCGGACACGCACGAGTCT 62.039 66.667 17.71 0.00 39.22 3.24
992 1011 1.286260 GGACACGCACGAGTCTTCT 59.714 57.895 17.71 0.00 36.29 2.85
994 1013 0.778815 GACACGCACGAGTCTTCTTG 59.221 55.000 12.41 0.00 33.88 3.02
995 1014 0.384309 ACACGCACGAGTCTTCTTGA 59.616 50.000 0.00 0.00 0.00 3.02
1839 1891 3.218209 GAAACCGACCGTGCACGTG 62.218 63.158 34.81 27.42 37.74 4.49
1939 1995 4.819630 AGTACGAAGGTTGAATGCAAAAGA 59.180 37.500 0.00 0.00 35.42 2.52
1964 2020 7.319646 ACTGTTGTTAGACTTGATGATCTCTC 58.680 38.462 0.00 0.00 0.00 3.20
1992 2048 1.561076 ACCAGAGCATGCAATCACCTA 59.439 47.619 21.98 0.00 0.00 3.08
2016 2072 5.979993 TGTTAATTAACCGGTAGCTGATCA 58.020 37.500 22.47 0.16 35.37 2.92
2034 2090 2.016318 TCATGCAATCGATCGGCTTTT 58.984 42.857 16.41 1.60 0.00 2.27
2052 2108 7.383300 TCGGCTTTTAGTTTCTTAGTTCAGTAC 59.617 37.037 0.00 0.00 0.00 2.73
2053 2109 7.508134 GGCTTTTAGTTTCTTAGTTCAGTACG 58.492 38.462 0.00 0.00 0.00 3.67
2054 2110 7.170489 GGCTTTTAGTTTCTTAGTTCAGTACGT 59.830 37.037 0.00 0.00 0.00 3.57
2055 2111 9.185192 GCTTTTAGTTTCTTAGTTCAGTACGTA 57.815 33.333 0.00 0.00 0.00 3.57
2059 2115 9.973246 TTAGTTTCTTAGTTCAGTACGTATACG 57.027 33.333 23.24 23.24 46.33 3.06
2095 2155 0.905357 AGCGGCAGTGGATCTTTACT 59.095 50.000 1.45 0.00 0.00 2.24
2346 2548 4.412199 TGAAGGAAAAGAGGACCTTTCAGA 59.588 41.667 0.00 0.00 43.90 3.27
2381 2587 7.338710 AGTAAGCATGTAGATTTGAAGGCTTA 58.661 34.615 0.00 0.00 40.45 3.09
2474 2680 4.628333 CACAAGATTTTTATGGGCTGCAAG 59.372 41.667 0.50 0.00 0.00 4.01
2515 2721 3.327600 CACATTCAGTGGAGGTGCA 57.672 52.632 2.73 0.00 44.69 4.57
2516 2722 1.830279 CACATTCAGTGGAGGTGCAT 58.170 50.000 2.73 0.00 44.69 3.96
2517 2723 1.471287 CACATTCAGTGGAGGTGCATG 59.529 52.381 2.73 0.00 44.69 4.06
2518 2724 0.454600 CATTCAGTGGAGGTGCATGC 59.545 55.000 11.82 11.82 0.00 4.06
2582 2788 2.450960 TTCAAACGGCGCCACAATCG 62.451 55.000 28.98 13.91 0.00 3.34
2591 2797 1.375908 GCCACAATCGTGCTCCAGA 60.376 57.895 0.00 0.00 42.17 3.86
2628 2834 5.426689 AGAGAAACATATTCAGACCAGCA 57.573 39.130 0.00 0.00 0.00 4.41
2645 2851 5.111293 ACCAGCAAGTCAAGAACAAAATTG 58.889 37.500 0.00 0.00 0.00 2.32
2677 2883 4.403113 TCATCAGCCGGTACAGTAATTACA 59.597 41.667 17.65 0.00 0.00 2.41
2685 2891 6.183360 GCCGGTACAGTAATTACATATGATGC 60.183 42.308 17.65 8.67 0.00 3.91
2715 2921 4.457603 TGTTTGAACACCCAATAATCCTCG 59.542 41.667 0.00 0.00 33.17 4.63
2737 2944 3.194116 GGACACATACTCCTCCGTAAACA 59.806 47.826 0.00 0.00 0.00 2.83
2738 2945 4.421948 GACACATACTCCTCCGTAAACAG 58.578 47.826 0.00 0.00 0.00 3.16
2748 2955 6.016108 ACTCCTCCGTAAACAGATATAAGAGC 60.016 42.308 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.259123 TCTTGCTAAGCTCACTGATGTCA 59.741 43.478 0.00 0.00 0.00 3.58
11 12 3.854666 TCTTGCTAAGCTCACTGATGTC 58.145 45.455 0.00 0.00 0.00 3.06
12 13 3.969287 TCTTGCTAAGCTCACTGATGT 57.031 42.857 0.00 0.00 0.00 3.06
13 14 4.694509 AGTTTCTTGCTAAGCTCACTGATG 59.305 41.667 0.00 0.00 0.00 3.07
14 15 4.904241 AGTTTCTTGCTAAGCTCACTGAT 58.096 39.130 0.00 0.00 0.00 2.90
15 16 4.342862 AGTTTCTTGCTAAGCTCACTGA 57.657 40.909 0.00 0.00 0.00 3.41
16 17 4.754114 AGAAGTTTCTTGCTAAGCTCACTG 59.246 41.667 0.00 0.00 32.55 3.66
17 18 4.967036 AGAAGTTTCTTGCTAAGCTCACT 58.033 39.130 0.00 0.00 32.55 3.41
18 19 5.681337 AAGAAGTTTCTTGCTAAGCTCAC 57.319 39.130 6.33 0.00 45.27 3.51
19 20 6.425114 CACTAAGAAGTTTCTTGCTAAGCTCA 59.575 38.462 15.51 0.00 46.34 4.26
20 21 6.647067 TCACTAAGAAGTTTCTTGCTAAGCTC 59.353 38.462 15.51 0.00 46.34 4.09
21 22 6.525629 TCACTAAGAAGTTTCTTGCTAAGCT 58.474 36.000 15.51 0.00 46.34 3.74
22 23 6.787085 TCACTAAGAAGTTTCTTGCTAAGC 57.213 37.500 15.51 0.00 46.34 3.09
23 24 8.142994 TGTTCACTAAGAAGTTTCTTGCTAAG 57.857 34.615 15.51 8.44 46.34 2.18
24 25 8.500753 TTGTTCACTAAGAAGTTTCTTGCTAA 57.499 30.769 15.51 4.22 46.34 3.09
25 26 8.500753 TTTGTTCACTAAGAAGTTTCTTGCTA 57.499 30.769 15.51 0.00 46.34 3.49
26 27 7.391148 TTTGTTCACTAAGAAGTTTCTTGCT 57.609 32.000 15.51 0.07 46.34 3.91
27 28 8.534778 CATTTTGTTCACTAAGAAGTTTCTTGC 58.465 33.333 15.51 2.43 46.34 4.01
28 29 9.573133 ACATTTTGTTCACTAAGAAGTTTCTTG 57.427 29.630 15.51 9.05 46.34 3.02
32 33 9.516314 GCTAACATTTTGTTCACTAAGAAGTTT 57.484 29.630 0.00 0.00 40.22 2.66
33 34 8.135529 GGCTAACATTTTGTTCACTAAGAAGTT 58.864 33.333 0.00 0.00 40.22 2.66
34 35 7.284489 TGGCTAACATTTTGTTCACTAAGAAGT 59.716 33.333 0.00 0.00 40.22 3.01
35 36 7.648142 TGGCTAACATTTTGTTCACTAAGAAG 58.352 34.615 0.00 0.00 40.22 2.85
36 37 7.575414 TGGCTAACATTTTGTTCACTAAGAA 57.425 32.000 0.00 0.00 40.22 2.52
37 38 7.759489 ATGGCTAACATTTTGTTCACTAAGA 57.241 32.000 0.00 0.00 40.22 2.10
55 56 9.890629 CAGCTATTCCTGTTTATTATATGGCTA 57.109 33.333 0.00 0.00 29.10 3.93
56 57 8.605947 TCAGCTATTCCTGTTTATTATATGGCT 58.394 33.333 0.00 0.00 34.47 4.75
57 58 8.792830 TCAGCTATTCCTGTTTATTATATGGC 57.207 34.615 0.00 0.00 34.47 4.40
63 64 9.733556 TGTTTTCTCAGCTATTCCTGTTTATTA 57.266 29.630 0.00 0.00 34.47 0.98
64 65 8.635765 TGTTTTCTCAGCTATTCCTGTTTATT 57.364 30.769 0.00 0.00 34.47 1.40
65 66 8.103305 TCTGTTTTCTCAGCTATTCCTGTTTAT 58.897 33.333 0.00 0.00 35.63 1.40
66 67 7.450074 TCTGTTTTCTCAGCTATTCCTGTTTA 58.550 34.615 0.00 0.00 35.63 2.01
67 68 6.299141 TCTGTTTTCTCAGCTATTCCTGTTT 58.701 36.000 0.00 0.00 35.63 2.83
68 69 5.869579 TCTGTTTTCTCAGCTATTCCTGTT 58.130 37.500 0.00 0.00 35.63 3.16
69 70 5.489792 TCTGTTTTCTCAGCTATTCCTGT 57.510 39.130 0.00 0.00 35.63 4.00
70 71 5.163913 CGTTCTGTTTTCTCAGCTATTCCTG 60.164 44.000 0.00 0.00 35.63 3.86
71 72 4.932200 CGTTCTGTTTTCTCAGCTATTCCT 59.068 41.667 0.00 0.00 35.63 3.36
72 73 4.929808 TCGTTCTGTTTTCTCAGCTATTCC 59.070 41.667 0.00 0.00 35.63 3.01
73 74 6.467723 TTCGTTCTGTTTTCTCAGCTATTC 57.532 37.500 0.00 0.00 35.63 1.75
74 75 6.650807 TGATTCGTTCTGTTTTCTCAGCTATT 59.349 34.615 0.00 0.00 35.63 1.73
75 76 6.166279 TGATTCGTTCTGTTTTCTCAGCTAT 58.834 36.000 0.00 0.00 35.63 2.97
76 77 5.538118 TGATTCGTTCTGTTTTCTCAGCTA 58.462 37.500 0.00 0.00 35.63 3.32
77 78 4.380531 TGATTCGTTCTGTTTTCTCAGCT 58.619 39.130 0.00 0.00 35.63 4.24
78 79 4.732285 TGATTCGTTCTGTTTTCTCAGC 57.268 40.909 0.00 0.00 35.63 4.26
79 80 6.798959 GGAATTGATTCGTTCTGTTTTCTCAG 59.201 38.462 0.00 0.00 37.67 3.35
80 81 6.262049 TGGAATTGATTCGTTCTGTTTTCTCA 59.738 34.615 0.00 0.00 37.67 3.27
81 82 6.668323 TGGAATTGATTCGTTCTGTTTTCTC 58.332 36.000 0.00 0.00 37.67 2.87
82 83 6.633500 TGGAATTGATTCGTTCTGTTTTCT 57.367 33.333 0.00 0.00 37.67 2.52
83 84 6.143919 GGTTGGAATTGATTCGTTCTGTTTTC 59.856 38.462 0.00 0.00 37.67 2.29
84 85 5.983118 GGTTGGAATTGATTCGTTCTGTTTT 59.017 36.000 0.00 0.00 37.67 2.43
85 86 5.301805 AGGTTGGAATTGATTCGTTCTGTTT 59.698 36.000 0.00 0.00 37.67 2.83
86 87 4.827284 AGGTTGGAATTGATTCGTTCTGTT 59.173 37.500 0.00 0.00 37.67 3.16
87 88 4.398319 AGGTTGGAATTGATTCGTTCTGT 58.602 39.130 0.00 0.00 37.67 3.41
88 89 5.447818 GCTAGGTTGGAATTGATTCGTTCTG 60.448 44.000 0.00 0.00 37.67 3.02
89 90 4.636206 GCTAGGTTGGAATTGATTCGTTCT 59.364 41.667 0.00 0.00 37.67 3.01
90 91 4.394920 TGCTAGGTTGGAATTGATTCGTTC 59.605 41.667 0.00 0.00 37.67 3.95
91 92 4.331968 TGCTAGGTTGGAATTGATTCGTT 58.668 39.130 0.00 0.00 37.67 3.85
92 93 3.941483 CTGCTAGGTTGGAATTGATTCGT 59.059 43.478 0.00 0.00 37.67 3.85
93 94 3.242870 GCTGCTAGGTTGGAATTGATTCG 60.243 47.826 0.00 0.00 37.67 3.34
94 95 3.696051 TGCTGCTAGGTTGGAATTGATTC 59.304 43.478 0.00 0.00 36.08 2.52
95 96 3.700538 TGCTGCTAGGTTGGAATTGATT 58.299 40.909 0.00 0.00 0.00 2.57
96 97 3.370840 TGCTGCTAGGTTGGAATTGAT 57.629 42.857 0.00 0.00 0.00 2.57
97 98 2.877097 TGCTGCTAGGTTGGAATTGA 57.123 45.000 0.00 0.00 0.00 2.57
98 99 3.018856 TCATGCTGCTAGGTTGGAATTG 58.981 45.455 0.00 0.00 0.00 2.32
99 100 3.054139 TCTCATGCTGCTAGGTTGGAATT 60.054 43.478 0.00 0.00 0.00 2.17
100 101 2.507058 TCTCATGCTGCTAGGTTGGAAT 59.493 45.455 0.00 0.00 0.00 3.01
101 102 1.908619 TCTCATGCTGCTAGGTTGGAA 59.091 47.619 0.00 0.00 0.00 3.53
102 103 1.571955 TCTCATGCTGCTAGGTTGGA 58.428 50.000 0.00 0.00 0.00 3.53
103 104 2.408271 TTCTCATGCTGCTAGGTTGG 57.592 50.000 0.00 0.00 0.00 3.77
104 105 2.097142 GCTTTCTCATGCTGCTAGGTTG 59.903 50.000 0.00 0.00 0.00 3.77
105 106 2.290514 TGCTTTCTCATGCTGCTAGGTT 60.291 45.455 0.00 0.00 0.00 3.50
106 107 1.280133 TGCTTTCTCATGCTGCTAGGT 59.720 47.619 0.00 0.00 0.00 3.08
107 108 2.034104 TGCTTTCTCATGCTGCTAGG 57.966 50.000 0.00 0.00 0.00 3.02
108 109 5.334957 CCAATATGCTTTCTCATGCTGCTAG 60.335 44.000 0.00 0.00 0.00 3.42
109 110 4.517832 CCAATATGCTTTCTCATGCTGCTA 59.482 41.667 0.00 0.00 0.00 3.49
110 111 3.318275 CCAATATGCTTTCTCATGCTGCT 59.682 43.478 0.00 0.00 0.00 4.24
111 112 3.639538 CCAATATGCTTTCTCATGCTGC 58.360 45.455 0.00 0.00 0.00 5.25
112 113 3.318275 AGCCAATATGCTTTCTCATGCTG 59.682 43.478 0.00 0.00 38.85 4.41
113 114 3.563223 AGCCAATATGCTTTCTCATGCT 58.437 40.909 0.00 0.00 38.85 3.79
149 150 9.862371 TTTGTGCTTGACAAGTTTAAGAATAAA 57.138 25.926 16.39 3.88 45.43 1.40
150 151 9.515020 CTTTGTGCTTGACAAGTTTAAGAATAA 57.485 29.630 16.39 0.02 45.43 1.40
151 152 8.682710 ACTTTGTGCTTGACAAGTTTAAGAATA 58.317 29.630 16.39 0.00 45.43 1.75
152 153 7.547227 ACTTTGTGCTTGACAAGTTTAAGAAT 58.453 30.769 16.39 0.00 45.43 2.40
153 154 6.919721 ACTTTGTGCTTGACAAGTTTAAGAA 58.080 32.000 16.39 3.16 45.43 2.52
154 155 6.509418 ACTTTGTGCTTGACAAGTTTAAGA 57.491 33.333 16.39 0.00 45.43 2.10
155 156 8.856490 ATAACTTTGTGCTTGACAAGTTTAAG 57.144 30.769 16.39 15.16 45.43 1.85
157 158 9.944663 CTTATAACTTTGTGCTTGACAAGTTTA 57.055 29.630 16.39 1.45 45.43 2.01
158 159 7.435192 GCTTATAACTTTGTGCTTGACAAGTTT 59.565 33.333 16.39 2.52 45.43 2.66
159 160 6.918022 GCTTATAACTTTGTGCTTGACAAGTT 59.082 34.615 16.39 4.57 45.43 2.66
160 161 6.039270 TGCTTATAACTTTGTGCTTGACAAGT 59.961 34.615 16.39 0.00 45.43 3.16
161 162 6.437928 TGCTTATAACTTTGTGCTTGACAAG 58.562 36.000 11.02 11.02 45.43 3.16
162 163 6.384258 TGCTTATAACTTTGTGCTTGACAA 57.616 33.333 0.00 0.00 43.11 3.18
163 164 6.183360 TGTTGCTTATAACTTTGTGCTTGACA 60.183 34.615 0.00 0.00 0.00 3.58
164 165 6.142320 GTGTTGCTTATAACTTTGTGCTTGAC 59.858 38.462 0.00 0.00 0.00 3.18
165 166 6.039270 AGTGTTGCTTATAACTTTGTGCTTGA 59.961 34.615 0.00 0.00 0.00 3.02
166 167 6.208644 AGTGTTGCTTATAACTTTGTGCTTG 58.791 36.000 0.00 0.00 0.00 4.01
167 168 6.391227 AGTGTTGCTTATAACTTTGTGCTT 57.609 33.333 0.00 0.00 0.00 3.91
168 169 6.263168 AGAAGTGTTGCTTATAACTTTGTGCT 59.737 34.615 0.00 0.00 37.59 4.40
169 170 6.438763 AGAAGTGTTGCTTATAACTTTGTGC 58.561 36.000 0.00 0.00 37.59 4.57
177 178 9.884636 TGCTAAGAATAGAAGTGTTGCTTATAA 57.115 29.630 0.00 0.00 37.59 0.98
178 179 9.534565 CTGCTAAGAATAGAAGTGTTGCTTATA 57.465 33.333 0.00 0.00 37.59 0.98
179 180 7.497249 CCTGCTAAGAATAGAAGTGTTGCTTAT 59.503 37.037 0.00 0.00 37.59 1.73
180 181 6.818644 CCTGCTAAGAATAGAAGTGTTGCTTA 59.181 38.462 0.00 0.00 37.59 3.09
181 182 5.645497 CCTGCTAAGAATAGAAGTGTTGCTT 59.355 40.000 0.00 0.00 40.76 3.91
182 183 5.046304 TCCTGCTAAGAATAGAAGTGTTGCT 60.046 40.000 0.00 0.00 33.41 3.91
183 184 5.178797 TCCTGCTAAGAATAGAAGTGTTGC 58.821 41.667 0.00 0.00 33.41 4.17
184 185 7.099764 TCTTCCTGCTAAGAATAGAAGTGTTG 58.900 38.462 0.00 0.00 33.41 3.33
185 186 7.246171 TCTTCCTGCTAAGAATAGAAGTGTT 57.754 36.000 0.00 0.00 33.41 3.32
186 187 6.859112 TCTTCCTGCTAAGAATAGAAGTGT 57.141 37.500 0.00 0.00 33.41 3.55
195 196 6.620877 TCCACTTATTCTTCCTGCTAAGAA 57.379 37.500 10.49 10.49 46.52 2.52
196 197 6.384015 TCATCCACTTATTCTTCCTGCTAAGA 59.616 38.462 0.00 0.00 33.69 2.10
197 198 6.481644 GTCATCCACTTATTCTTCCTGCTAAG 59.518 42.308 0.00 0.00 0.00 2.18
198 199 6.349300 GTCATCCACTTATTCTTCCTGCTAA 58.651 40.000 0.00 0.00 0.00 3.09
199 200 5.163301 GGTCATCCACTTATTCTTCCTGCTA 60.163 44.000 0.00 0.00 0.00 3.49
200 201 4.384647 GGTCATCCACTTATTCTTCCTGCT 60.385 45.833 0.00 0.00 0.00 4.24
201 202 3.879892 GGTCATCCACTTATTCTTCCTGC 59.120 47.826 0.00 0.00 0.00 4.85
202 203 5.102953 TGGTCATCCACTTATTCTTCCTG 57.897 43.478 0.00 0.00 39.03 3.86
203 204 5.488919 TCTTGGTCATCCACTTATTCTTCCT 59.511 40.000 0.00 0.00 44.22 3.36
204 205 5.745227 TCTTGGTCATCCACTTATTCTTCC 58.255 41.667 0.00 0.00 44.22 3.46
205 206 6.261826 CCATCTTGGTCATCCACTTATTCTTC 59.738 42.308 0.00 0.00 44.22 2.87
206 207 6.125029 CCATCTTGGTCATCCACTTATTCTT 58.875 40.000 0.00 0.00 44.22 2.52
207 208 5.398353 CCCATCTTGGTCATCCACTTATTCT 60.398 44.000 0.00 0.00 44.22 2.40
208 209 4.823989 CCCATCTTGGTCATCCACTTATTC 59.176 45.833 0.00 0.00 44.22 1.75
209 210 4.230502 ACCCATCTTGGTCATCCACTTATT 59.769 41.667 0.00 0.00 44.22 1.40
210 211 3.788142 ACCCATCTTGGTCATCCACTTAT 59.212 43.478 0.00 0.00 44.22 1.73
211 212 3.054434 CACCCATCTTGGTCATCCACTTA 60.054 47.826 0.00 0.00 44.22 2.24
212 213 1.995542 ACCCATCTTGGTCATCCACTT 59.004 47.619 0.00 0.00 44.22 3.16
213 214 1.283029 CACCCATCTTGGTCATCCACT 59.717 52.381 0.00 0.00 44.22 4.00
214 215 1.281867 TCACCCATCTTGGTCATCCAC 59.718 52.381 0.00 0.00 44.22 4.02
215 216 1.667595 TCACCCATCTTGGTCATCCA 58.332 50.000 0.00 0.00 42.66 3.41
216 217 2.806945 TTCACCCATCTTGGTCATCC 57.193 50.000 0.00 0.00 36.12 3.51
217 218 5.888161 AGTAATTTCACCCATCTTGGTCATC 59.112 40.000 0.00 0.00 36.12 2.92
218 219 5.831103 AGTAATTTCACCCATCTTGGTCAT 58.169 37.500 0.00 0.00 36.12 3.06
219 220 5.255397 AGTAATTTCACCCATCTTGGTCA 57.745 39.130 0.00 0.00 36.12 4.02
220 221 6.486993 GGATAGTAATTTCACCCATCTTGGTC 59.513 42.308 0.00 0.00 36.12 4.02
221 222 6.069088 TGGATAGTAATTTCACCCATCTTGGT 60.069 38.462 0.00 0.00 39.96 3.67
222 223 6.364701 TGGATAGTAATTTCACCCATCTTGG 58.635 40.000 0.00 0.00 37.25 3.61
223 224 7.880160 TTGGATAGTAATTTCACCCATCTTG 57.120 36.000 0.00 0.00 0.00 3.02
224 225 9.492730 AATTTGGATAGTAATTTCACCCATCTT 57.507 29.630 0.00 0.00 0.00 2.40
225 226 9.492730 AAATTTGGATAGTAATTTCACCCATCT 57.507 29.630 0.00 0.00 30.31 2.90
226 227 9.533253 CAAATTTGGATAGTAATTTCACCCATC 57.467 33.333 10.49 0.00 33.04 3.51
227 228 9.265862 TCAAATTTGGATAGTAATTTCACCCAT 57.734 29.630 17.90 0.00 33.04 4.00
228 229 8.657387 TCAAATTTGGATAGTAATTTCACCCA 57.343 30.769 17.90 0.00 33.04 4.51
229 230 9.936759 TTTCAAATTTGGATAGTAATTTCACCC 57.063 29.630 17.90 0.00 33.04 4.61
263 264 9.061435 GCTACTATTCAGGAGATTAAGCAATTT 57.939 33.333 0.00 0.00 34.16 1.82
264 265 8.435982 AGCTACTATTCAGGAGATTAAGCAATT 58.564 33.333 0.00 0.00 34.16 2.32
265 266 7.972301 AGCTACTATTCAGGAGATTAAGCAAT 58.028 34.615 0.00 0.00 34.16 3.56
266 267 7.366847 AGCTACTATTCAGGAGATTAAGCAA 57.633 36.000 0.00 0.00 34.16 3.91
267 268 6.985653 AGCTACTATTCAGGAGATTAAGCA 57.014 37.500 0.00 0.00 34.16 3.91
268 269 7.383843 GTCAAGCTACTATTCAGGAGATTAAGC 59.616 40.741 0.00 0.00 39.40 3.09
269 270 8.637986 AGTCAAGCTACTATTCAGGAGATTAAG 58.362 37.037 0.00 0.00 39.40 1.85
270 271 8.540507 AGTCAAGCTACTATTCAGGAGATTAA 57.459 34.615 0.00 0.00 39.40 1.40
271 272 9.642343 TTAGTCAAGCTACTATTCAGGAGATTA 57.358 33.333 0.00 0.00 39.40 1.75
272 273 8.417884 GTTAGTCAAGCTACTATTCAGGAGATT 58.582 37.037 0.00 0.00 42.24 2.40
273 274 7.561722 TGTTAGTCAAGCTACTATTCAGGAGAT 59.438 37.037 0.00 0.00 34.16 2.75
274 275 6.890268 TGTTAGTCAAGCTACTATTCAGGAGA 59.110 38.462 0.00 0.00 34.16 3.71
275 276 7.101652 TGTTAGTCAAGCTACTATTCAGGAG 57.898 40.000 0.00 0.00 35.58 3.69
276 277 7.342026 TCATGTTAGTCAAGCTACTATTCAGGA 59.658 37.037 10.12 10.12 32.16 3.86
277 278 7.492524 TCATGTTAGTCAAGCTACTATTCAGG 58.507 38.462 0.00 3.48 32.16 3.86
278 279 8.409371 TCTCATGTTAGTCAAGCTACTATTCAG 58.591 37.037 0.00 0.00 32.16 3.02
279 280 8.293699 TCTCATGTTAGTCAAGCTACTATTCA 57.706 34.615 0.00 2.07 32.16 2.57
280 281 9.026074 GTTCTCATGTTAGTCAAGCTACTATTC 57.974 37.037 0.00 0.00 32.16 1.75
281 282 8.754080 AGTTCTCATGTTAGTCAAGCTACTATT 58.246 33.333 0.00 0.00 32.16 1.73
282 283 8.299990 AGTTCTCATGTTAGTCAAGCTACTAT 57.700 34.615 0.00 0.00 32.16 2.12
283 284 7.704578 AGTTCTCATGTTAGTCAAGCTACTA 57.295 36.000 0.00 0.00 0.00 1.82
284 285 6.597832 AGTTCTCATGTTAGTCAAGCTACT 57.402 37.500 0.00 0.00 0.00 2.57
285 286 8.758633 TTTAGTTCTCATGTTAGTCAAGCTAC 57.241 34.615 0.00 0.00 0.00 3.58
286 287 9.772973 TTTTTAGTTCTCATGTTAGTCAAGCTA 57.227 29.630 0.00 0.00 0.00 3.32
287 288 8.677148 TTTTTAGTTCTCATGTTAGTCAAGCT 57.323 30.769 0.00 0.00 0.00 3.74
288 289 8.774586 TCTTTTTAGTTCTCATGTTAGTCAAGC 58.225 33.333 0.00 0.00 0.00 4.01
291 292 9.996554 TCATCTTTTTAGTTCTCATGTTAGTCA 57.003 29.630 0.00 0.00 0.00 3.41
296 297 9.566432 AGTTCTCATCTTTTTAGTTCTCATGTT 57.434 29.630 0.00 0.00 0.00 2.71
308 309 9.481340 GCCATTCTTTTTAGTTCTCATCTTTTT 57.519 29.630 0.00 0.00 0.00 1.94
309 310 8.641541 TGCCATTCTTTTTAGTTCTCATCTTTT 58.358 29.630 0.00 0.00 0.00 2.27
310 311 8.181904 TGCCATTCTTTTTAGTTCTCATCTTT 57.818 30.769 0.00 0.00 0.00 2.52
311 312 7.667219 TCTGCCATTCTTTTTAGTTCTCATCTT 59.333 33.333 0.00 0.00 0.00 2.40
312 313 7.170965 TCTGCCATTCTTTTTAGTTCTCATCT 58.829 34.615 0.00 0.00 0.00 2.90
313 314 7.383102 TCTGCCATTCTTTTTAGTTCTCATC 57.617 36.000 0.00 0.00 0.00 2.92
314 315 7.951347 ATCTGCCATTCTTTTTAGTTCTCAT 57.049 32.000 0.00 0.00 0.00 2.90
315 316 7.765695 AATCTGCCATTCTTTTTAGTTCTCA 57.234 32.000 0.00 0.00 0.00 3.27
316 317 9.780413 CTAAATCTGCCATTCTTTTTAGTTCTC 57.220 33.333 0.00 0.00 0.00 2.87
317 318 8.246871 GCTAAATCTGCCATTCTTTTTAGTTCT 58.753 33.333 0.00 0.00 32.12 3.01
318 319 8.399768 GCTAAATCTGCCATTCTTTTTAGTTC 57.600 34.615 0.00 0.00 32.12 3.01
333 334 2.424956 CTCCAAACTGGGCTAAATCTGC 59.575 50.000 0.00 0.00 38.32 4.26
334 335 3.690460 ACTCCAAACTGGGCTAAATCTG 58.310 45.455 0.00 0.00 38.32 2.90
335 336 4.388577 AACTCCAAACTGGGCTAAATCT 57.611 40.909 0.00 0.00 38.32 2.40
336 337 4.522789 TCAAACTCCAAACTGGGCTAAATC 59.477 41.667 0.00 0.00 38.32 2.17
337 338 4.280929 GTCAAACTCCAAACTGGGCTAAAT 59.719 41.667 0.00 0.00 38.32 1.40
338 339 3.634910 GTCAAACTCCAAACTGGGCTAAA 59.365 43.478 0.00 0.00 38.32 1.85
339 340 3.219281 GTCAAACTCCAAACTGGGCTAA 58.781 45.455 0.00 0.00 38.32 3.09
340 341 2.488347 GGTCAAACTCCAAACTGGGCTA 60.488 50.000 0.00 0.00 38.32 3.93
341 342 1.692411 GTCAAACTCCAAACTGGGCT 58.308 50.000 0.00 0.00 38.32 5.19
342 343 0.673985 GGTCAAACTCCAAACTGGGC 59.326 55.000 0.00 0.00 38.32 5.36
343 344 1.956477 CTGGTCAAACTCCAAACTGGG 59.044 52.381 0.00 0.00 38.32 4.45
344 345 2.880890 CTCTGGTCAAACTCCAAACTGG 59.119 50.000 0.00 0.00 39.43 4.00
345 346 3.808728 TCTCTGGTCAAACTCCAAACTG 58.191 45.455 0.00 0.00 34.35 3.16
346 347 4.713792 ATCTCTGGTCAAACTCCAAACT 57.286 40.909 0.00 0.00 34.35 2.66
347 348 5.794894 TCTATCTCTGGTCAAACTCCAAAC 58.205 41.667 0.00 0.00 34.35 2.93
348 349 6.183361 TGTTCTATCTCTGGTCAAACTCCAAA 60.183 38.462 0.00 0.00 34.35 3.28
349 350 5.306937 TGTTCTATCTCTGGTCAAACTCCAA 59.693 40.000 0.00 0.00 34.35 3.53
350 351 4.838423 TGTTCTATCTCTGGTCAAACTCCA 59.162 41.667 0.00 0.00 0.00 3.86
351 352 5.186021 TCTGTTCTATCTCTGGTCAAACTCC 59.814 44.000 0.00 0.00 0.00 3.85
352 353 6.274157 TCTGTTCTATCTCTGGTCAAACTC 57.726 41.667 0.00 0.00 0.00 3.01
353 354 6.672266 TTCTGTTCTATCTCTGGTCAAACT 57.328 37.500 0.00 0.00 0.00 2.66
354 355 7.604164 TCATTTCTGTTCTATCTCTGGTCAAAC 59.396 37.037 0.00 0.00 0.00 2.93
355 356 7.679783 TCATTTCTGTTCTATCTCTGGTCAAA 58.320 34.615 0.00 0.00 0.00 2.69
356 357 7.244886 TCATTTCTGTTCTATCTCTGGTCAA 57.755 36.000 0.00 0.00 0.00 3.18
357 358 6.857437 TCATTTCTGTTCTATCTCTGGTCA 57.143 37.500 0.00 0.00 0.00 4.02
358 359 6.705381 CCATCATTTCTGTTCTATCTCTGGTC 59.295 42.308 0.00 0.00 0.00 4.02
359 360 6.385176 TCCATCATTTCTGTTCTATCTCTGGT 59.615 38.462 0.00 0.00 0.00 4.00
360 361 6.824553 TCCATCATTTCTGTTCTATCTCTGG 58.175 40.000 0.00 0.00 0.00 3.86
361 362 8.148999 TCATCCATCATTTCTGTTCTATCTCTG 58.851 37.037 0.00 0.00 0.00 3.35
362 363 8.260099 TCATCCATCATTTCTGTTCTATCTCT 57.740 34.615 0.00 0.00 0.00 3.10
363 364 8.366401 TCTCATCCATCATTTCTGTTCTATCTC 58.634 37.037 0.00 0.00 0.00 2.75
364 365 8.260099 TCTCATCCATCATTTCTGTTCTATCT 57.740 34.615 0.00 0.00 0.00 1.98
365 366 8.937884 CATCTCATCCATCATTTCTGTTCTATC 58.062 37.037 0.00 0.00 0.00 2.08
366 367 8.657712 TCATCTCATCCATCATTTCTGTTCTAT 58.342 33.333 0.00 0.00 0.00 1.98
367 368 8.026396 TCATCTCATCCATCATTTCTGTTCTA 57.974 34.615 0.00 0.00 0.00 2.10
368 369 6.896883 TCATCTCATCCATCATTTCTGTTCT 58.103 36.000 0.00 0.00 0.00 3.01
369 370 6.293516 GCTCATCTCATCCATCATTTCTGTTC 60.294 42.308 0.00 0.00 0.00 3.18
370 371 5.531659 GCTCATCTCATCCATCATTTCTGTT 59.468 40.000 0.00 0.00 0.00 3.16
371 372 5.064558 GCTCATCTCATCCATCATTTCTGT 58.935 41.667 0.00 0.00 0.00 3.41
372 373 4.456222 GGCTCATCTCATCCATCATTTCTG 59.544 45.833 0.00 0.00 0.00 3.02
373 374 4.104261 TGGCTCATCTCATCCATCATTTCT 59.896 41.667 0.00 0.00 0.00 2.52
374 375 4.395625 TGGCTCATCTCATCCATCATTTC 58.604 43.478 0.00 0.00 0.00 2.17
375 376 4.448720 TGGCTCATCTCATCCATCATTT 57.551 40.909 0.00 0.00 0.00 2.32
376 377 4.659529 ATGGCTCATCTCATCCATCATT 57.340 40.909 0.00 0.00 34.43 2.57
377 378 5.030820 TCTATGGCTCATCTCATCCATCAT 58.969 41.667 0.00 0.00 39.74 2.45
378 379 4.422984 TCTATGGCTCATCTCATCCATCA 58.577 43.478 0.00 0.00 39.74 3.07
379 380 5.417754 TTCTATGGCTCATCTCATCCATC 57.582 43.478 0.00 0.00 39.74 3.51
380 381 6.390048 AATTCTATGGCTCATCTCATCCAT 57.610 37.500 0.00 0.00 41.71 3.41
381 382 5.837770 AATTCTATGGCTCATCTCATCCA 57.162 39.130 0.00 0.00 0.00 3.41
382 383 5.106237 GCAAATTCTATGGCTCATCTCATCC 60.106 44.000 0.00 0.00 0.00 3.51
383 384 5.706369 AGCAAATTCTATGGCTCATCTCATC 59.294 40.000 0.00 0.00 28.71 2.92
384 385 5.632118 AGCAAATTCTATGGCTCATCTCAT 58.368 37.500 0.00 0.00 28.71 2.90
385 386 5.045012 AGCAAATTCTATGGCTCATCTCA 57.955 39.130 0.00 0.00 28.71 3.27
386 387 5.048852 GGAAGCAAATTCTATGGCTCATCTC 60.049 44.000 0.00 0.00 38.07 2.75
387 388 4.826183 GGAAGCAAATTCTATGGCTCATCT 59.174 41.667 0.00 0.00 38.07 2.90
388 389 4.826183 AGGAAGCAAATTCTATGGCTCATC 59.174 41.667 0.00 0.00 38.07 2.92
389 390 4.583489 CAGGAAGCAAATTCTATGGCTCAT 59.417 41.667 0.00 0.00 38.07 2.90
390 391 3.949754 CAGGAAGCAAATTCTATGGCTCA 59.050 43.478 0.00 0.00 38.07 4.26
391 392 4.202441 TCAGGAAGCAAATTCTATGGCTC 58.798 43.478 0.00 0.00 38.07 4.70
392 393 4.240881 TCAGGAAGCAAATTCTATGGCT 57.759 40.909 0.00 0.00 38.07 4.75
393 394 4.158394 TGTTCAGGAAGCAAATTCTATGGC 59.842 41.667 0.00 0.00 38.07 4.40
394 395 5.649395 TCTGTTCAGGAAGCAAATTCTATGG 59.351 40.000 0.00 0.00 38.07 2.74
395 396 6.748333 TCTGTTCAGGAAGCAAATTCTATG 57.252 37.500 0.00 0.00 38.07 2.23
396 397 6.320672 CCATCTGTTCAGGAAGCAAATTCTAT 59.679 38.462 0.00 0.00 38.07 1.98
397 398 5.649395 CCATCTGTTCAGGAAGCAAATTCTA 59.351 40.000 0.00 0.00 38.07 2.10
398 399 4.461781 CCATCTGTTCAGGAAGCAAATTCT 59.538 41.667 0.00 0.00 38.07 2.40
399 400 4.460382 TCCATCTGTTCAGGAAGCAAATTC 59.540 41.667 0.00 0.00 37.17 2.17
400 401 4.410099 TCCATCTGTTCAGGAAGCAAATT 58.590 39.130 0.00 0.00 0.00 1.82
401 402 4.038271 TCCATCTGTTCAGGAAGCAAAT 57.962 40.909 0.00 0.00 0.00 2.32
402 403 3.507162 TCCATCTGTTCAGGAAGCAAA 57.493 42.857 0.00 0.00 0.00 3.68
403 404 3.726557 ATCCATCTGTTCAGGAAGCAA 57.273 42.857 0.00 0.00 34.62 3.91
404 405 3.118261 GGTATCCATCTGTTCAGGAAGCA 60.118 47.826 0.00 0.00 34.62 3.91
405 406 3.118261 TGGTATCCATCTGTTCAGGAAGC 60.118 47.826 0.00 0.00 34.62 3.86
406 407 4.163078 AGTGGTATCCATCTGTTCAGGAAG 59.837 45.833 0.00 0.00 35.28 3.46
407 408 4.080919 CAGTGGTATCCATCTGTTCAGGAA 60.081 45.833 0.00 0.00 35.28 3.36
408 409 3.452264 CAGTGGTATCCATCTGTTCAGGA 59.548 47.826 0.00 0.00 35.28 3.86
409 410 3.452264 TCAGTGGTATCCATCTGTTCAGG 59.548 47.826 13.54 0.00 35.28 3.86
410 411 4.403752 TCTCAGTGGTATCCATCTGTTCAG 59.596 45.833 13.54 0.00 35.28 3.02
411 412 4.352893 TCTCAGTGGTATCCATCTGTTCA 58.647 43.478 13.54 0.00 35.28 3.18
412 413 5.105146 ACTTCTCAGTGGTATCCATCTGTTC 60.105 44.000 13.54 0.00 35.28 3.18
413 414 4.780021 ACTTCTCAGTGGTATCCATCTGTT 59.220 41.667 13.54 0.00 35.28 3.16
414 415 4.357325 ACTTCTCAGTGGTATCCATCTGT 58.643 43.478 13.54 0.00 35.28 3.41
415 416 5.350504 AACTTCTCAGTGGTATCCATCTG 57.649 43.478 10.06 10.06 35.28 2.90
416 417 5.738909 CAAACTTCTCAGTGGTATCCATCT 58.261 41.667 0.00 0.00 35.28 2.90
417 418 4.333926 GCAAACTTCTCAGTGGTATCCATC 59.666 45.833 0.00 0.00 35.28 3.51
418 419 4.265073 GCAAACTTCTCAGTGGTATCCAT 58.735 43.478 0.00 0.00 35.28 3.41
419 420 3.674997 GCAAACTTCTCAGTGGTATCCA 58.325 45.455 0.00 0.00 31.60 3.41
420 421 2.673368 CGCAAACTTCTCAGTGGTATCC 59.327 50.000 0.00 0.00 31.60 2.59
421 422 3.585862 TCGCAAACTTCTCAGTGGTATC 58.414 45.455 0.00 0.00 31.60 2.24
422 423 3.678056 TCGCAAACTTCTCAGTGGTAT 57.322 42.857 0.00 0.00 31.60 2.73
423 424 3.462483 TTCGCAAACTTCTCAGTGGTA 57.538 42.857 0.00 0.00 31.60 3.25
424 425 2.325583 TTCGCAAACTTCTCAGTGGT 57.674 45.000 0.00 0.00 31.60 4.16
425 426 3.691049 TTTTCGCAAACTTCTCAGTGG 57.309 42.857 0.00 0.00 31.60 4.00
426 427 5.036737 ACATTTTTCGCAAACTTCTCAGTG 58.963 37.500 0.00 0.00 31.60 3.66
427 428 5.163663 TGACATTTTTCGCAAACTTCTCAGT 60.164 36.000 0.00 0.00 33.11 3.41
428 429 5.273170 TGACATTTTTCGCAAACTTCTCAG 58.727 37.500 0.00 0.00 0.00 3.35
429 430 5.242069 TGACATTTTTCGCAAACTTCTCA 57.758 34.783 0.00 0.00 0.00 3.27
430 431 5.743872 ACTTGACATTTTTCGCAAACTTCTC 59.256 36.000 0.00 0.00 0.00 2.87
431 432 5.650543 ACTTGACATTTTTCGCAAACTTCT 58.349 33.333 0.00 0.00 0.00 2.85
432 433 5.949233 ACTTGACATTTTTCGCAAACTTC 57.051 34.783 0.00 0.00 0.00 3.01
436 437 3.928992 TGCAACTTGACATTTTTCGCAAA 59.071 34.783 0.00 0.00 0.00 3.68
521 522 3.275999 AGCTGTGAAAAACGTAGGTGTT 58.724 40.909 0.00 0.00 0.00 3.32
547 548 1.571215 CGGTTTTAGCCGTGACCCAC 61.571 60.000 0.00 0.00 46.11 4.61
548 549 1.301874 CGGTTTTAGCCGTGACCCA 60.302 57.895 0.00 0.00 46.11 4.51
549 550 3.569902 CGGTTTTAGCCGTGACCC 58.430 61.111 0.00 0.00 46.11 4.46
610 612 3.612423 CACTCGTCGCTGATAATTTCACA 59.388 43.478 0.00 0.00 0.00 3.58
661 674 2.434185 TTCAGATCACGGGCGTGC 60.434 61.111 0.00 0.00 45.04 5.34
687 700 0.034380 TGTGGTCGTGGGTTTTTCCA 60.034 50.000 0.00 0.00 38.11 3.53
701 714 2.362077 GTGCTGTGGATTTTCTTGTGGT 59.638 45.455 0.00 0.00 0.00 4.16
706 719 2.380064 TGGGTGCTGTGGATTTTCTT 57.620 45.000 0.00 0.00 0.00 2.52
732 746 1.153369 ATGATCGCCGTGGAGGTTG 60.153 57.895 0.00 0.00 43.70 3.77
737 751 2.106938 GCTCATGATCGCCGTGGA 59.893 61.111 0.00 0.00 32.64 4.02
756 770 0.983378 GAGGGGACAGGTGTGGCTAT 60.983 60.000 0.00 0.00 0.00 2.97
757 771 1.612442 GAGGGGACAGGTGTGGCTA 60.612 63.158 0.00 0.00 0.00 3.93
804 822 1.289066 CGTGGTGGATATCGCGGAT 59.711 57.895 6.13 0.00 37.28 4.18
805 823 2.725641 CGTGGTGGATATCGCGGA 59.274 61.111 6.13 0.00 37.28 5.54
956 975 3.749064 GGCGTCCGTGCTCTCTGA 61.749 66.667 0.00 0.00 34.52 3.27
986 1005 1.806542 TCGCCATTGCTTCAAGAAGAC 59.193 47.619 13.70 5.80 40.79 3.01
987 1006 1.806542 GTCGCCATTGCTTCAAGAAGA 59.193 47.619 13.70 0.00 40.79 2.87
988 1007 1.135575 GGTCGCCATTGCTTCAAGAAG 60.136 52.381 5.46 5.46 41.24 2.85
989 1008 0.881118 GGTCGCCATTGCTTCAAGAA 59.119 50.000 0.00 0.00 34.43 2.52
992 1011 1.523154 GGTGGTCGCCATTGCTTCAA 61.523 55.000 1.90 0.00 35.28 2.69
994 1013 2.877691 GGTGGTCGCCATTGCTTC 59.122 61.111 1.90 0.00 35.28 3.86
995 1014 3.055719 CGGTGGTCGCCATTGCTT 61.056 61.111 1.90 0.00 35.28 3.91
1053 1082 2.432628 GACGACGGCAGGTCCTTG 60.433 66.667 0.00 0.00 42.99 3.61
1155 1184 3.807538 TAGAGCACGCGGTCGGAC 61.808 66.667 12.47 0.00 44.60 4.79
1939 1995 7.039434 TGAGAGATCATCAAGTCTAACAACAGT 60.039 37.037 0.00 0.00 0.00 3.55
1964 2020 1.022735 GCATGCTCTGGTTGATCCTG 58.977 55.000 11.37 0.00 37.07 3.86
1975 2031 3.572632 ACATAGGTGATTGCATGCTCT 57.427 42.857 20.33 5.70 0.00 4.09
1992 2048 6.588204 TGATCAGCTACCGGTTAATTAACAT 58.412 36.000 25.59 14.80 37.92 2.71
2016 2072 3.206150 ACTAAAAGCCGATCGATTGCAT 58.794 40.909 18.66 1.19 0.00 3.96
2052 2108 7.373703 GCTGTATGATAAGCATCTACGTATACG 59.626 40.741 23.24 23.24 41.21 3.06
2053 2109 7.373703 CGCTGTATGATAAGCATCTACGTATAC 59.626 40.741 0.00 0.00 39.47 1.47
2054 2110 7.407337 CGCTGTATGATAAGCATCTACGTATA 58.593 38.462 0.00 0.00 39.47 1.47
2055 2111 6.258899 CGCTGTATGATAAGCATCTACGTAT 58.741 40.000 0.00 0.00 39.47 3.06
2056 2112 5.391629 CCGCTGTATGATAAGCATCTACGTA 60.392 44.000 0.00 0.00 39.47 3.57
2057 2113 4.476862 CGCTGTATGATAAGCATCTACGT 58.523 43.478 0.00 0.00 39.47 3.57
2058 2114 3.854240 CCGCTGTATGATAAGCATCTACG 59.146 47.826 7.18 0.00 39.47 3.51
2059 2115 3.614616 GCCGCTGTATGATAAGCATCTAC 59.385 47.826 7.18 0.00 39.47 2.59
2060 2116 3.258123 TGCCGCTGTATGATAAGCATCTA 59.742 43.478 0.00 0.00 39.47 1.98
2061 2117 2.037641 TGCCGCTGTATGATAAGCATCT 59.962 45.455 0.00 0.00 39.47 2.90
2095 2155 5.181245 GCCAAAGACATCTACTTTTACTGCA 59.819 40.000 0.00 0.00 35.74 4.41
2346 2548 8.798859 AATCTACATGCTTACTCTGTCATTTT 57.201 30.769 0.00 0.00 0.00 1.82
2381 2587 8.561738 TCTAGTTTCTTCAGTTTTGTGTCTTT 57.438 30.769 0.00 0.00 0.00 2.52
2461 2667 1.849692 TCATACCCTTGCAGCCCATAA 59.150 47.619 0.00 0.00 0.00 1.90
2474 2680 2.092968 TGTCTGACTTGGCATCATACCC 60.093 50.000 9.51 0.00 0.00 3.69
2515 2721 1.948104 TGCTATCTTTTACGCCGCAT 58.052 45.000 0.00 0.00 0.00 4.73
2516 2722 1.948104 ATGCTATCTTTTACGCCGCA 58.052 45.000 0.00 0.00 0.00 5.69
2517 2723 3.664537 GCTAATGCTATCTTTTACGCCGC 60.665 47.826 0.00 0.00 36.03 6.53
2518 2724 3.493129 TGCTAATGCTATCTTTTACGCCG 59.507 43.478 0.00 0.00 40.48 6.46
2582 2788 8.200792 TCTTTATATTCTTCTTCTCTGGAGCAC 58.799 37.037 0.00 0.00 0.00 4.40
2613 2819 5.181009 TCTTGACTTGCTGGTCTGAATATG 58.819 41.667 10.07 0.00 37.16 1.78
2677 2883 7.086376 GTGTTCAAACAACAGAAGCATCATAT 58.914 34.615 0.00 0.00 41.21 1.78
2715 2921 3.194116 TGTTTACGGAGGAGTATGTGTCC 59.806 47.826 0.00 0.00 0.00 4.02
2757 2964 8.263854 TCCCTCCCTAAAGAAATATAAGAGTG 57.736 38.462 0.00 0.00 0.00 3.51
2758 2965 8.074991 ACTCCCTCCCTAAAGAAATATAAGAGT 58.925 37.037 0.00 0.00 0.00 3.24
2775 2993 1.855599 TGGTACCTAGTACTCCCTCCC 59.144 57.143 14.36 0.00 38.85 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.