Multiple sequence alignment - TraesCS1D01G411200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G411200 chr1D 100.000 4164 0 0 426 4589 472540794 472536631 0.000000e+00 7690.0
1 TraesCS1D01G411200 chr1D 100.000 77 0 0 1 77 472541219 472541143 4.790000e-30 143.0
2 TraesCS1D01G411200 chr1A 96.800 2281 51 12 426 2692 566500887 566498615 0.000000e+00 3788.0
3 TraesCS1D01G411200 chr1A 93.319 1422 57 22 2692 4087 566498578 566497169 0.000000e+00 2065.0
4 TraesCS1D01G411200 chr1A 98.701 77 1 0 1 77 566501066 566500990 2.230000e-28 137.0
5 TraesCS1D01G411200 chr1B 95.919 2279 56 13 426 2690 657191434 657189179 0.000000e+00 3659.0
6 TraesCS1D01G411200 chr1B 91.775 1155 47 19 2692 3807 657189139 657187994 0.000000e+00 1563.0
7 TraesCS1D01G411200 chr2B 87.065 402 44 7 4189 4588 493231750 493232145 9.060000e-122 448.0
8 TraesCS1D01G411200 chr2D 86.822 387 46 4 4201 4586 607662734 607663116 1.180000e-115 427.0
9 TraesCS1D01G411200 chr2D 86.035 401 46 8 4189 4587 589695930 589696322 5.490000e-114 422.0
10 TraesCS1D01G411200 chr7D 86.070 402 47 7 4189 4587 46789639 46790034 1.530000e-114 424.0
11 TraesCS1D01G411200 chr4D 85.012 407 53 7 4186 4588 53739147 53738745 1.540000e-109 407.0
12 TraesCS1D01G411200 chr4D 85.323 402 49 7 4189 4588 396431848 396431455 1.540000e-109 407.0
13 TraesCS1D01G411200 chr5D 85.037 401 55 4 4189 4587 24328830 24328433 1.990000e-108 403.0
14 TraesCS1D01G411200 chr3D 84.826 402 49 10 4189 4588 606385587 606385978 1.200000e-105 394.0
15 TraesCS1D01G411200 chr6D 84.577 402 53 7 4189 4588 409281131 409280737 1.550000e-104 390.0
16 TraesCS1D01G411200 chr7B 94.872 39 1 1 4151 4188 25656531 25656493 4.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G411200 chr1D 472536631 472541219 4588 True 3916.500000 7690 100.000000 1 4589 2 chr1D.!!$R1 4588
1 TraesCS1D01G411200 chr1A 566497169 566501066 3897 True 1996.666667 3788 96.273333 1 4087 3 chr1A.!!$R1 4086
2 TraesCS1D01G411200 chr1B 657187994 657191434 3440 True 2611.000000 3659 93.847000 426 3807 2 chr1B.!!$R1 3381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 0.107508 AGCATGTCGGGGTGAATCAG 60.108 55.0 0.00 0.00 0.00 2.90 F
654 663 1.326951 TGCCACGGATACTGCTAGCA 61.327 55.0 18.22 18.22 0.00 3.49 F
1715 1724 0.846693 GACCAACTGCCTGGGGATAT 59.153 55.0 0.00 0.00 41.16 1.63 F
2767 2820 0.743097 GCCTCATGTCATTCCCTTGC 59.257 55.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1715 1724 1.140252 GCCCCTGAGCGGAGTAATTTA 59.860 52.381 0.00 0.00 33.16 1.40 R
2467 2476 7.332430 TGCGCTACTAATAACTAACATGTGTTT 59.668 33.333 9.73 0.00 39.31 2.83 R
3576 3656 0.459237 ACATCGTCTACTGCTGCTGC 60.459 55.000 8.89 8.89 40.20 5.25 R
4431 4532 0.037447 GGGAGGATATGAGGGCTTGC 59.963 60.000 0.00 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.108970 GGTCGAGGTCTGAATAGGGTT 58.891 52.381 0.00 0.00 0.00 4.11
493 494 0.107508 AGCATGTCGGGGTGAATCAG 60.108 55.000 0.00 0.00 0.00 2.90
502 503 1.538666 GGTGAATCAGGGGGATGGG 59.461 63.158 0.00 0.00 36.02 4.00
586 595 5.151389 CCACGGACACTTTGTTTTATTAGC 58.849 41.667 0.00 0.00 0.00 3.09
628 637 3.691342 CTCGAACGAGGGTGGGCA 61.691 66.667 15.22 0.00 38.51 5.36
654 663 1.326951 TGCCACGGATACTGCTAGCA 61.327 55.000 18.22 18.22 0.00 3.49
688 697 4.160439 TGCTCGAGTTCTCATTAGTCCATT 59.840 41.667 15.13 0.00 0.00 3.16
694 703 6.703607 CGAGTTCTCATTAGTCCATTGCTTAT 59.296 38.462 0.79 0.00 0.00 1.73
731 740 4.662278 TCTTTCCAATGGGTTTCCTAGTG 58.338 43.478 0.00 0.00 34.93 2.74
1524 1533 1.771854 TCACCAGTTGAGGTTAAGCCA 59.228 47.619 0.00 0.00 40.77 4.75
1638 1647 4.423732 GTGATGAACTTTGTGTTGCACTT 58.576 39.130 0.00 0.00 39.30 3.16
1715 1724 0.846693 GACCAACTGCCTGGGGATAT 59.153 55.000 0.00 0.00 41.16 1.63
2158 2167 1.507140 CTAGGCCCCACAACCATCTA 58.493 55.000 0.00 0.00 0.00 1.98
2159 2168 2.057922 CTAGGCCCCACAACCATCTAT 58.942 52.381 0.00 0.00 0.00 1.98
2160 2169 0.846693 AGGCCCCACAACCATCTATC 59.153 55.000 0.00 0.00 0.00 2.08
2161 2170 0.846693 GGCCCCACAACCATCTATCT 59.153 55.000 0.00 0.00 0.00 1.98
2400 2409 5.514500 AAGGCTCACTTAACAATAAGGGA 57.486 39.130 1.04 1.04 46.79 4.20
2467 2476 7.032580 ACTTTTTGACACGTTGATGATTTTCA 58.967 30.769 0.00 0.00 0.00 2.69
2535 2544 2.297033 TCTTGCTTTGGGAATTCACTGC 59.703 45.455 9.56 10.99 0.00 4.40
2547 2556 6.823689 TGGGAATTCACTGCTAAAATACTCTC 59.176 38.462 9.56 0.00 0.00 3.20
2607 2621 6.233434 TGTATCAGGATGTATTTGGATGAGC 58.767 40.000 0.00 0.00 37.40 4.26
2622 2636 5.545588 TGGATGAGCTATCAGTAATCTTGC 58.454 41.667 0.00 0.00 39.29 4.01
2624 2638 4.918810 TGAGCTATCAGTAATCTTGCGA 57.081 40.909 0.00 0.00 0.00 5.10
2767 2820 0.743097 GCCTCATGTCATTCCCTTGC 59.257 55.000 0.00 0.00 0.00 4.01
2816 2872 5.239306 ACATGGTGGATTATTGTCTATTGCG 59.761 40.000 0.00 0.00 0.00 4.85
2835 2891 5.029650 TGCGTTCTGTGCTTAAATAGTTG 57.970 39.130 0.00 0.00 0.00 3.16
2841 2897 6.182039 TCTGTGCTTAAATAGTTGCATGTC 57.818 37.500 0.00 0.00 37.76 3.06
2909 2968 6.631971 TGAGCTAATTGTGTTGTGATTTGA 57.368 33.333 0.00 0.00 0.00 2.69
3385 3459 2.473760 GGATCAGCAGCAGCAGCAG 61.474 63.158 12.92 3.97 45.49 4.24
3590 3670 1.080995 CCTTCGCAGCAGCAGTAGAC 61.081 60.000 0.82 0.00 42.27 2.59
3646 3726 5.106594 TGCTCTTGTATGCAATGTGTACTTG 60.107 40.000 0.00 0.00 36.15 3.16
3667 3747 3.339093 CCCTGGAACCACCCTCCC 61.339 72.222 0.00 0.00 38.00 4.30
3705 3790 4.230502 AGTTGTTTACCATCCATCCATCCT 59.769 41.667 0.00 0.00 0.00 3.24
3792 3888 6.371548 GTCATAAAGAGATTTGTGGTGCTACA 59.628 38.462 0.00 0.00 0.00 2.74
3824 3923 0.610687 AACTGCCAGTAGCCTCTGTC 59.389 55.000 0.00 0.00 42.71 3.51
3840 3939 5.240891 CCTCTGTCTTTCTGTCTGCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
3868 3968 0.823356 TGGTTGCTTGCTTGGACCTC 60.823 55.000 0.00 0.00 0.00 3.85
3869 3969 0.823356 GGTTGCTTGCTTGGACCTCA 60.823 55.000 0.00 0.00 0.00 3.86
3870 3970 1.251251 GTTGCTTGCTTGGACCTCAT 58.749 50.000 0.00 0.00 0.00 2.90
3871 3971 1.068055 GTTGCTTGCTTGGACCTCATG 60.068 52.381 0.00 0.00 0.00 3.07
3873 3973 1.202915 TGCTTGCTTGGACCTCATGAA 60.203 47.619 0.00 0.00 0.00 2.57
3874 3974 1.471684 GCTTGCTTGGACCTCATGAAG 59.528 52.381 0.00 0.00 0.00 3.02
3875 3975 1.471684 CTTGCTTGGACCTCATGAAGC 59.528 52.381 7.70 7.70 41.03 3.86
3901 4002 4.854399 TGGTTTGCGTTTCTAAGTGAATG 58.146 39.130 0.00 0.00 34.24 2.67
3905 4006 5.508200 TTGCGTTTCTAAGTGAATGGTTT 57.492 34.783 0.00 0.00 34.24 3.27
3906 4007 6.621316 TTGCGTTTCTAAGTGAATGGTTTA 57.379 33.333 0.00 0.00 34.24 2.01
3966 4067 2.102420 TGAGAGCGTGGACAAGAAGAAA 59.898 45.455 0.00 0.00 0.00 2.52
3977 4078 4.074970 GACAAGAAGAAAAGATGGAGGCA 58.925 43.478 0.00 0.00 0.00 4.75
3986 4087 2.957402 AGATGGAGGCACAAACAGAA 57.043 45.000 0.00 0.00 0.00 3.02
4001 4102 6.252228 CACAAACAGAAGAAGTTGAAAAGCTC 59.748 38.462 0.00 0.00 0.00 4.09
4002 4103 4.802876 ACAGAAGAAGTTGAAAAGCTCG 57.197 40.909 0.00 0.00 0.00 5.03
4009 4110 2.338500 AGTTGAAAAGCTCGTCGGATC 58.662 47.619 0.00 0.00 0.00 3.36
4065 4166 0.613292 ATCCTGTGCTGAGACCGACT 60.613 55.000 0.00 0.00 0.00 4.18
4076 4177 2.364324 TGAGACCGACTGTGCTAGTTTT 59.636 45.455 0.00 0.00 40.53 2.43
4083 4184 3.241364 CGACTGTGCTAGTTTTTCGATCG 60.241 47.826 9.36 9.36 40.53 3.69
4087 4188 4.304110 TGTGCTAGTTTTTCGATCGAACT 58.696 39.130 29.15 24.58 37.40 3.01
4088 4189 4.149922 TGTGCTAGTTTTTCGATCGAACTG 59.850 41.667 29.15 17.81 35.43 3.16
4089 4190 3.678072 TGCTAGTTTTTCGATCGAACTGG 59.322 43.478 29.15 24.39 35.43 4.00
4090 4191 3.678548 GCTAGTTTTTCGATCGAACTGGT 59.321 43.478 29.15 16.60 35.22 4.00
4091 4192 4.201599 GCTAGTTTTTCGATCGAACTGGTC 60.202 45.833 29.15 16.75 35.22 4.02
4092 4193 3.724374 AGTTTTTCGATCGAACTGGTCA 58.276 40.909 29.15 11.68 32.73 4.02
4093 4194 3.493503 AGTTTTTCGATCGAACTGGTCAC 59.506 43.478 29.15 17.76 32.73 3.67
4094 4195 3.380479 TTTTCGATCGAACTGGTCACT 57.620 42.857 29.15 0.00 33.41 3.41
4095 4196 4.508461 TTTTCGATCGAACTGGTCACTA 57.492 40.909 29.15 9.43 33.41 2.74
4096 4197 3.482722 TTCGATCGAACTGGTCACTAC 57.517 47.619 25.96 0.00 0.00 2.73
4097 4198 1.395954 TCGATCGAACTGGTCACTACG 59.604 52.381 16.99 0.00 0.00 3.51
4098 4199 1.546834 GATCGAACTGGTCACTACGC 58.453 55.000 0.00 0.00 0.00 4.42
4099 4200 0.172803 ATCGAACTGGTCACTACGCC 59.827 55.000 0.00 0.00 0.00 5.68
4100 4201 1.445582 CGAACTGGTCACTACGCCC 60.446 63.158 0.00 0.00 0.00 6.13
4101 4202 1.669440 GAACTGGTCACTACGCCCA 59.331 57.895 0.00 0.00 0.00 5.36
4102 4203 0.669625 GAACTGGTCACTACGCCCAC 60.670 60.000 0.00 0.00 0.00 4.61
4103 4204 1.119574 AACTGGTCACTACGCCCACT 61.120 55.000 0.00 0.00 0.00 4.00
4104 4205 1.079819 CTGGTCACTACGCCCACTG 60.080 63.158 0.00 0.00 0.00 3.66
4105 4206 2.434359 GGTCACTACGCCCACTGC 60.434 66.667 0.00 0.00 0.00 4.40
4106 4207 2.434359 GTCACTACGCCCACTGCC 60.434 66.667 0.00 0.00 36.24 4.85
4107 4208 4.063967 TCACTACGCCCACTGCCG 62.064 66.667 0.00 0.00 36.24 5.69
4124 4225 4.828296 GCCACTCCAGCCCCCATG 62.828 72.222 0.00 0.00 0.00 3.66
4125 4226 4.133373 CCACTCCAGCCCCCATGG 62.133 72.222 4.14 4.14 39.33 3.66
4136 4237 3.419580 CCCATGGGCAGCCACCTA 61.420 66.667 20.41 0.00 0.00 3.08
4137 4238 2.124151 CCATGGGCAGCCACCTAC 60.124 66.667 15.19 0.00 0.00 3.18
4138 4239 2.124151 CATGGGCAGCCACCTACC 60.124 66.667 15.19 0.00 0.00 3.18
4139 4240 3.420482 ATGGGCAGCCACCTACCC 61.420 66.667 15.19 0.00 44.00 3.69
4143 4244 3.798511 GCAGCCACCTACCCCCTC 61.799 72.222 0.00 0.00 0.00 4.30
4144 4245 2.041265 CAGCCACCTACCCCCTCT 59.959 66.667 0.00 0.00 0.00 3.69
4145 4246 2.066999 CAGCCACCTACCCCCTCTC 61.067 68.421 0.00 0.00 0.00 3.20
4146 4247 3.155167 GCCACCTACCCCCTCTCG 61.155 72.222 0.00 0.00 0.00 4.04
4147 4248 2.444140 CCACCTACCCCCTCTCGG 60.444 72.222 0.00 0.00 0.00 4.63
4156 4257 3.133946 CCCTCTCGGGCTTAGAGC 58.866 66.667 10.09 0.00 45.33 4.09
4157 4258 1.758514 CCCTCTCGGGCTTAGAGCA 60.759 63.158 10.09 0.00 45.33 4.26
4158 4259 1.118356 CCCTCTCGGGCTTAGAGCAT 61.118 60.000 10.09 0.00 45.33 3.79
4159 4260 0.755686 CCTCTCGGGCTTAGAGCATT 59.244 55.000 10.09 0.00 44.75 3.56
4160 4261 1.139853 CCTCTCGGGCTTAGAGCATTT 59.860 52.381 10.09 0.00 44.75 2.32
4161 4262 2.365617 CCTCTCGGGCTTAGAGCATTTA 59.634 50.000 10.09 0.00 44.75 1.40
4162 4263 3.385577 CTCTCGGGCTTAGAGCATTTAC 58.614 50.000 2.04 0.00 44.75 2.01
4163 4264 2.764010 TCTCGGGCTTAGAGCATTTACA 59.236 45.455 2.04 0.00 44.75 2.41
4164 4265 3.196901 TCTCGGGCTTAGAGCATTTACAA 59.803 43.478 2.04 0.00 44.75 2.41
4165 4266 3.267483 TCGGGCTTAGAGCATTTACAAC 58.733 45.455 2.04 0.00 44.75 3.32
4166 4267 2.354821 CGGGCTTAGAGCATTTACAACC 59.645 50.000 2.04 0.00 44.75 3.77
4167 4268 2.354821 GGGCTTAGAGCATTTACAACCG 59.645 50.000 2.04 0.00 44.75 4.44
4168 4269 2.354821 GGCTTAGAGCATTTACAACCGG 59.645 50.000 0.00 0.00 44.75 5.28
4169 4270 3.267483 GCTTAGAGCATTTACAACCGGA 58.733 45.455 9.46 0.00 41.89 5.14
4170 4271 3.063588 GCTTAGAGCATTTACAACCGGAC 59.936 47.826 9.46 0.00 41.89 4.79
4171 4272 2.851263 AGAGCATTTACAACCGGACA 57.149 45.000 9.46 0.00 0.00 4.02
4172 4273 3.350219 AGAGCATTTACAACCGGACAT 57.650 42.857 9.46 0.00 0.00 3.06
4173 4274 4.481368 AGAGCATTTACAACCGGACATA 57.519 40.909 9.46 0.00 0.00 2.29
4174 4275 4.442706 AGAGCATTTACAACCGGACATAG 58.557 43.478 9.46 0.00 0.00 2.23
4175 4276 2.943033 AGCATTTACAACCGGACATAGC 59.057 45.455 9.46 1.25 0.00 2.97
4176 4277 2.680841 GCATTTACAACCGGACATAGCA 59.319 45.455 9.46 0.00 0.00 3.49
4177 4278 3.127895 GCATTTACAACCGGACATAGCAA 59.872 43.478 9.46 0.00 0.00 3.91
4178 4279 4.202010 GCATTTACAACCGGACATAGCAAT 60.202 41.667 9.46 0.00 0.00 3.56
4179 4280 5.008217 GCATTTACAACCGGACATAGCAATA 59.992 40.000 9.46 0.00 0.00 1.90
4180 4281 6.293955 GCATTTACAACCGGACATAGCAATAT 60.294 38.462 9.46 0.00 0.00 1.28
4181 4282 6.612247 TTTACAACCGGACATAGCAATATG 57.388 37.500 9.46 0.00 0.00 1.78
4182 4283 4.415881 ACAACCGGACATAGCAATATGA 57.584 40.909 9.46 0.00 0.00 2.15
4183 4284 4.127171 ACAACCGGACATAGCAATATGAC 58.873 43.478 9.46 0.00 0.00 3.06
4184 4285 3.402628 ACCGGACATAGCAATATGACC 57.597 47.619 9.46 4.79 38.37 4.02
4185 4286 2.038557 ACCGGACATAGCAATATGACCC 59.961 50.000 9.46 6.38 38.46 4.46
4186 4287 2.615493 CCGGACATAGCAATATGACCCC 60.615 54.545 0.00 4.56 38.46 4.95
4187 4288 2.303022 CGGACATAGCAATATGACCCCT 59.697 50.000 9.95 0.00 38.46 4.79
4188 4289 3.513912 CGGACATAGCAATATGACCCCTA 59.486 47.826 9.95 0.00 38.46 3.53
4189 4290 4.620803 CGGACATAGCAATATGACCCCTAC 60.621 50.000 9.95 0.00 38.46 3.18
4190 4291 4.286032 GGACATAGCAATATGACCCCTACA 59.714 45.833 2.41 0.00 36.66 2.74
4191 4292 5.045578 GGACATAGCAATATGACCCCTACAT 60.046 44.000 2.41 0.00 36.66 2.29
4192 4293 6.156256 GGACATAGCAATATGACCCCTACATA 59.844 42.308 2.41 0.00 36.66 2.29
4193 4294 7.187824 ACATAGCAATATGACCCCTACATAG 57.812 40.000 2.41 0.00 34.43 2.23
4194 4295 4.559862 AGCAATATGACCCCTACATAGC 57.440 45.455 0.00 0.00 34.43 2.97
4195 4296 3.909995 AGCAATATGACCCCTACATAGCA 59.090 43.478 0.00 0.00 34.43 3.49
4196 4297 4.350816 AGCAATATGACCCCTACATAGCAA 59.649 41.667 0.00 0.00 34.43 3.91
4197 4298 5.014544 AGCAATATGACCCCTACATAGCAAT 59.985 40.000 0.00 0.00 34.43 3.56
4198 4299 6.215431 AGCAATATGACCCCTACATAGCAATA 59.785 38.462 0.00 0.00 34.43 1.90
4199 4300 7.056635 GCAATATGACCCCTACATAGCAATAT 58.943 38.462 0.00 0.00 34.43 1.28
4200 4301 7.012704 GCAATATGACCCCTACATAGCAATATG 59.987 40.741 0.00 0.00 34.43 1.78
4201 4302 7.995052 ATATGACCCCTACATAGCAATATGA 57.005 36.000 2.41 0.00 34.43 2.15
4202 4303 5.483685 TGACCCCTACATAGCAATATGAC 57.516 43.478 2.41 0.00 0.00 3.06
4203 4304 4.286032 TGACCCCTACATAGCAATATGACC 59.714 45.833 2.41 0.00 0.00 4.02
4204 4305 3.587506 ACCCCTACATAGCAATATGACCC 59.412 47.826 2.41 0.00 0.00 4.46
4205 4306 3.054361 CCCCTACATAGCAATATGACCCC 60.054 52.174 2.41 0.00 0.00 4.95
4206 4307 3.846588 CCCTACATAGCAATATGACCCCT 59.153 47.826 2.41 0.00 0.00 4.79
4207 4308 4.289672 CCCTACATAGCAATATGACCCCTT 59.710 45.833 2.41 0.00 0.00 3.95
4208 4309 5.487488 CCCTACATAGCAATATGACCCCTTA 59.513 44.000 2.41 0.00 0.00 2.69
4209 4310 6.012858 CCCTACATAGCAATATGACCCCTTAA 60.013 42.308 2.41 0.00 0.00 1.85
4210 4311 7.458397 CCTACATAGCAATATGACCCCTTAAA 58.542 38.462 2.41 0.00 0.00 1.52
4211 4312 8.109634 CCTACATAGCAATATGACCCCTTAAAT 58.890 37.037 2.41 0.00 0.00 1.40
4212 4313 7.765695 ACATAGCAATATGACCCCTTAAATG 57.234 36.000 2.41 0.00 0.00 2.32
4213 4314 6.209391 ACATAGCAATATGACCCCTTAAATGC 59.791 38.462 2.41 0.00 0.00 3.56
4214 4315 4.808042 AGCAATATGACCCCTTAAATGCT 58.192 39.130 0.00 0.00 36.83 3.79
4215 4316 5.211201 AGCAATATGACCCCTTAAATGCTT 58.789 37.500 0.00 0.00 38.35 3.91
4216 4317 5.069516 AGCAATATGACCCCTTAAATGCTTG 59.930 40.000 0.00 0.00 38.35 4.01
4217 4318 5.291971 CAATATGACCCCTTAAATGCTTGC 58.708 41.667 0.00 0.00 0.00 4.01
4218 4319 1.173043 TGACCCCTTAAATGCTTGCG 58.827 50.000 0.00 0.00 0.00 4.85
4219 4320 0.455815 GACCCCTTAAATGCTTGCGG 59.544 55.000 0.00 0.00 0.00 5.69
4220 4321 0.039035 ACCCCTTAAATGCTTGCGGA 59.961 50.000 0.00 0.00 0.00 5.54
4221 4322 0.455815 CCCCTTAAATGCTTGCGGAC 59.544 55.000 0.00 0.00 0.00 4.79
4222 4323 0.098728 CCCTTAAATGCTTGCGGACG 59.901 55.000 0.00 0.00 0.00 4.79
4223 4324 0.523335 CCTTAAATGCTTGCGGACGC 60.523 55.000 10.13 10.13 42.35 5.19
4224 4325 0.857311 CTTAAATGCTTGCGGACGCG 60.857 55.000 3.53 3.53 45.51 6.01
4225 4326 2.842588 TTAAATGCTTGCGGACGCGC 62.843 55.000 5.73 10.59 45.51 6.86
4246 4347 2.335369 GTCAGCGACCAGACGTGT 59.665 61.111 0.00 0.00 35.59 4.49
4247 4348 1.729838 GTCAGCGACCAGACGTGTC 60.730 63.158 0.00 0.00 35.59 3.67
4248 4349 2.430921 CAGCGACCAGACGTGTCC 60.431 66.667 0.00 0.00 35.59 4.02
4249 4350 4.039357 AGCGACCAGACGTGTCCG 62.039 66.667 0.00 0.00 40.83 4.79
4259 4360 2.943653 CGTGTCCGTTTTGAGCCC 59.056 61.111 0.00 0.00 0.00 5.19
4260 4361 1.597027 CGTGTCCGTTTTGAGCCCT 60.597 57.895 0.00 0.00 0.00 5.19
4261 4362 1.164041 CGTGTCCGTTTTGAGCCCTT 61.164 55.000 0.00 0.00 0.00 3.95
4262 4363 1.874739 CGTGTCCGTTTTGAGCCCTTA 60.875 52.381 0.00 0.00 0.00 2.69
4263 4364 2.433436 GTGTCCGTTTTGAGCCCTTAT 58.567 47.619 0.00 0.00 0.00 1.73
4264 4365 2.817844 GTGTCCGTTTTGAGCCCTTATT 59.182 45.455 0.00 0.00 0.00 1.40
4265 4366 3.254903 GTGTCCGTTTTGAGCCCTTATTT 59.745 43.478 0.00 0.00 0.00 1.40
4266 4367 4.456566 GTGTCCGTTTTGAGCCCTTATTTA 59.543 41.667 0.00 0.00 0.00 1.40
4267 4368 5.124936 GTGTCCGTTTTGAGCCCTTATTTAT 59.875 40.000 0.00 0.00 0.00 1.40
4268 4369 5.355910 TGTCCGTTTTGAGCCCTTATTTATC 59.644 40.000 0.00 0.00 0.00 1.75
4269 4370 4.885325 TCCGTTTTGAGCCCTTATTTATCC 59.115 41.667 0.00 0.00 0.00 2.59
4270 4371 4.642885 CCGTTTTGAGCCCTTATTTATCCA 59.357 41.667 0.00 0.00 0.00 3.41
4271 4372 5.301805 CCGTTTTGAGCCCTTATTTATCCAT 59.698 40.000 0.00 0.00 0.00 3.41
4272 4373 6.438763 CGTTTTGAGCCCTTATTTATCCATC 58.561 40.000 0.00 0.00 0.00 3.51
4273 4374 6.263168 CGTTTTGAGCCCTTATTTATCCATCT 59.737 38.462 0.00 0.00 0.00 2.90
4274 4375 7.428826 GTTTTGAGCCCTTATTTATCCATCTG 58.571 38.462 0.00 0.00 0.00 2.90
4275 4376 4.655963 TGAGCCCTTATTTATCCATCTGC 58.344 43.478 0.00 0.00 0.00 4.26
4276 4377 3.679389 AGCCCTTATTTATCCATCTGCG 58.321 45.455 0.00 0.00 0.00 5.18
4277 4378 2.162408 GCCCTTATTTATCCATCTGCGC 59.838 50.000 0.00 0.00 0.00 6.09
4278 4379 3.411446 CCCTTATTTATCCATCTGCGCA 58.589 45.455 10.98 10.98 0.00 6.09
4279 4380 3.438087 CCCTTATTTATCCATCTGCGCAG 59.562 47.826 31.53 31.53 0.00 5.18
4296 4397 4.419522 CGCAGCCACACTACTTATTTTT 57.580 40.909 0.00 0.00 0.00 1.94
4297 4398 4.403453 CGCAGCCACACTACTTATTTTTC 58.597 43.478 0.00 0.00 0.00 2.29
4298 4399 4.154195 CGCAGCCACACTACTTATTTTTCT 59.846 41.667 0.00 0.00 0.00 2.52
4299 4400 5.631992 GCAGCCACACTACTTATTTTTCTC 58.368 41.667 0.00 0.00 0.00 2.87
4300 4401 5.392057 GCAGCCACACTACTTATTTTTCTCC 60.392 44.000 0.00 0.00 0.00 3.71
4301 4402 5.940470 CAGCCACACTACTTATTTTTCTCCT 59.060 40.000 0.00 0.00 0.00 3.69
4302 4403 6.092807 CAGCCACACTACTTATTTTTCTCCTC 59.907 42.308 0.00 0.00 0.00 3.71
4303 4404 5.938125 GCCACACTACTTATTTTTCTCCTCA 59.062 40.000 0.00 0.00 0.00 3.86
4304 4405 6.599638 GCCACACTACTTATTTTTCTCCTCAT 59.400 38.462 0.00 0.00 0.00 2.90
4305 4406 7.769044 GCCACACTACTTATTTTTCTCCTCATA 59.231 37.037 0.00 0.00 0.00 2.15
4306 4407 9.838339 CCACACTACTTATTTTTCTCCTCATAT 57.162 33.333 0.00 0.00 0.00 1.78
4311 4412 9.197694 CTACTTATTTTTCTCCTCATATGTCCG 57.802 37.037 1.90 0.00 0.00 4.79
4312 4413 6.992715 ACTTATTTTTCTCCTCATATGTCCGG 59.007 38.462 1.90 0.00 0.00 5.14
4313 4414 4.837093 TTTTTCTCCTCATATGTCCGGT 57.163 40.909 0.00 0.00 0.00 5.28
4314 4415 4.402056 TTTTCTCCTCATATGTCCGGTC 57.598 45.455 0.00 0.00 0.00 4.79
4315 4416 2.748209 TCTCCTCATATGTCCGGTCA 57.252 50.000 3.25 3.25 0.00 4.02
4316 4417 2.307768 TCTCCTCATATGTCCGGTCAC 58.692 52.381 2.72 0.00 0.00 3.67
4317 4418 2.091830 TCTCCTCATATGTCCGGTCACT 60.092 50.000 2.72 0.00 0.00 3.41
4318 4419 2.695666 CTCCTCATATGTCCGGTCACTT 59.304 50.000 2.72 0.00 0.00 3.16
4319 4420 2.430694 TCCTCATATGTCCGGTCACTTG 59.569 50.000 2.72 5.02 0.00 3.16
4320 4421 2.205074 CTCATATGTCCGGTCACTTGC 58.795 52.381 2.72 0.00 0.00 4.01
4321 4422 1.552792 TCATATGTCCGGTCACTTGCA 59.447 47.619 2.72 0.00 0.00 4.08
4322 4423 1.665679 CATATGTCCGGTCACTTGCAC 59.334 52.381 2.72 0.00 0.00 4.57
4323 4424 0.389296 TATGTCCGGTCACTTGCACG 60.389 55.000 2.72 0.00 0.00 5.34
4324 4425 2.279918 GTCCGGTCACTTGCACGT 60.280 61.111 0.00 0.00 0.00 4.49
4325 4426 2.279851 TCCGGTCACTTGCACGTG 60.280 61.111 16.76 16.76 36.25 4.49
4326 4427 2.279851 CCGGTCACTTGCACGTGA 60.280 61.111 20.99 20.99 41.33 4.35
4327 4428 1.667830 CCGGTCACTTGCACGTGAT 60.668 57.895 26.42 0.00 44.84 3.06
4328 4429 1.227999 CCGGTCACTTGCACGTGATT 61.228 55.000 26.42 0.00 44.84 2.57
4329 4430 0.110688 CGGTCACTTGCACGTGATTG 60.111 55.000 26.42 18.26 44.84 2.67
4330 4431 1.225855 GGTCACTTGCACGTGATTGA 58.774 50.000 26.42 11.93 44.84 2.57
4331 4432 1.806542 GGTCACTTGCACGTGATTGAT 59.193 47.619 26.42 0.00 44.84 2.57
4332 4433 2.413239 GGTCACTTGCACGTGATTGATG 60.413 50.000 26.42 10.16 44.84 3.07
4333 4434 1.805943 TCACTTGCACGTGATTGATGG 59.194 47.619 20.99 1.64 38.89 3.51
4334 4435 1.805943 CACTTGCACGTGATTGATGGA 59.194 47.619 22.23 0.00 37.06 3.41
4335 4436 2.079158 ACTTGCACGTGATTGATGGAG 58.921 47.619 22.23 6.56 0.00 3.86
4336 4437 2.289631 ACTTGCACGTGATTGATGGAGA 60.290 45.455 22.23 0.00 0.00 3.71
4337 4438 1.725641 TGCACGTGATTGATGGAGAC 58.274 50.000 22.23 0.00 0.00 3.36
4356 4457 8.839310 TGGAGACAAAGAGAGAGAAATAAAAG 57.161 34.615 0.00 0.00 37.44 2.27
4357 4458 8.651389 TGGAGACAAAGAGAGAGAAATAAAAGA 58.349 33.333 0.00 0.00 37.44 2.52
4358 4459 9.495572 GGAGACAAAGAGAGAGAAATAAAAGAA 57.504 33.333 0.00 0.00 0.00 2.52
4360 4461 8.983724 AGACAAAGAGAGAGAAATAAAAGAACG 58.016 33.333 0.00 0.00 0.00 3.95
4361 4462 8.888579 ACAAAGAGAGAGAAATAAAAGAACGA 57.111 30.769 0.00 0.00 0.00 3.85
4362 4463 9.326413 ACAAAGAGAGAGAAATAAAAGAACGAA 57.674 29.630 0.00 0.00 0.00 3.85
4381 4482 9.952188 AGAACGAATAAAGAAAAGAGAAAAAGG 57.048 29.630 0.00 0.00 0.00 3.11
4382 4483 9.731819 GAACGAATAAAGAAAAGAGAAAAAGGT 57.268 29.630 0.00 0.00 0.00 3.50
4383 4484 9.516314 AACGAATAAAGAAAAGAGAAAAAGGTG 57.484 29.630 0.00 0.00 0.00 4.00
4384 4485 8.135529 ACGAATAAAGAAAAGAGAAAAAGGTGG 58.864 33.333 0.00 0.00 0.00 4.61
4385 4486 8.135529 CGAATAAAGAAAAGAGAAAAAGGTGGT 58.864 33.333 0.00 0.00 0.00 4.16
4386 4487 9.464714 GAATAAAGAAAAGAGAAAAAGGTGGTC 57.535 33.333 0.00 0.00 0.00 4.02
4387 4488 5.854010 AAGAAAAGAGAAAAAGGTGGTCC 57.146 39.130 0.00 0.00 0.00 4.46
4388 4489 3.883489 AGAAAAGAGAAAAAGGTGGTCCG 59.117 43.478 0.00 0.00 39.05 4.79
4389 4490 2.271944 AAGAGAAAAAGGTGGTCCGG 57.728 50.000 0.00 0.00 39.05 5.14
4390 4491 0.400594 AGAGAAAAAGGTGGTCCGGG 59.599 55.000 0.00 0.00 39.05 5.73
4391 4492 0.109913 GAGAAAAAGGTGGTCCGGGT 59.890 55.000 0.00 0.00 39.05 5.28
4392 4493 0.179001 AGAAAAAGGTGGTCCGGGTG 60.179 55.000 0.00 0.00 39.05 4.61
4393 4494 1.152631 AAAAAGGTGGTCCGGGTGG 60.153 57.895 0.00 0.00 39.05 4.61
4394 4495 2.650226 AAAAAGGTGGTCCGGGTGGG 62.650 60.000 0.00 0.00 39.05 4.61
4406 4507 4.468689 GGTGGGGCTGCGTCCTAC 62.469 72.222 7.05 7.05 38.08 3.18
4407 4508 4.814294 GTGGGGCTGCGTCCTACG 62.814 72.222 11.05 0.00 45.88 3.51
4409 4510 4.814294 GGGGCTGCGTCCTACGTG 62.814 72.222 0.00 0.00 44.73 4.49
4410 4511 4.814294 GGGCTGCGTCCTACGTGG 62.814 72.222 0.00 0.00 44.73 4.94
4416 4517 3.437795 CGTCCTACGTGGCGGACT 61.438 66.667 22.63 0.00 45.88 3.85
4417 4518 2.181021 GTCCTACGTGGCGGACTG 59.819 66.667 19.88 0.00 44.90 3.51
4418 4519 3.755628 TCCTACGTGGCGGACTGC 61.756 66.667 0.00 0.00 45.38 4.40
4428 4529 3.991051 CGGACTGCCCAGACGTGT 61.991 66.667 0.00 0.00 34.14 4.49
4429 4530 2.048127 GGACTGCCCAGACGTGTC 60.048 66.667 0.00 0.00 34.14 3.67
4430 4531 2.048127 GACTGCCCAGACGTGTCC 60.048 66.667 0.00 0.00 0.00 4.02
4431 4532 3.916392 GACTGCCCAGACGTGTCCG 62.916 68.421 0.00 0.00 40.83 4.79
4434 4535 4.980805 GCCCAGACGTGTCCGCAA 62.981 66.667 0.00 0.00 37.70 4.85
4435 4536 2.738521 CCCAGACGTGTCCGCAAG 60.739 66.667 0.00 0.00 37.70 4.01
4436 4537 3.414700 CCAGACGTGTCCGCAAGC 61.415 66.667 0.00 0.00 37.70 4.01
4437 4538 3.414700 CAGACGTGTCCGCAAGCC 61.415 66.667 0.00 0.00 37.70 4.35
4438 4539 4.681978 AGACGTGTCCGCAAGCCC 62.682 66.667 0.00 0.00 37.70 5.19
4439 4540 4.681978 GACGTGTCCGCAAGCCCT 62.682 66.667 0.00 0.00 37.70 5.19
4440 4541 4.681978 ACGTGTCCGCAAGCCCTC 62.682 66.667 0.00 0.00 37.70 4.30
4441 4542 4.680237 CGTGTCCGCAAGCCCTCA 62.680 66.667 0.00 0.00 0.00 3.86
4442 4543 2.045926 GTGTCCGCAAGCCCTCAT 60.046 61.111 0.00 0.00 0.00 2.90
4443 4544 1.220749 GTGTCCGCAAGCCCTCATA 59.779 57.895 0.00 0.00 0.00 2.15
4444 4545 0.179045 GTGTCCGCAAGCCCTCATAT 60.179 55.000 0.00 0.00 0.00 1.78
4445 4546 0.106708 TGTCCGCAAGCCCTCATATC 59.893 55.000 0.00 0.00 0.00 1.63
4446 4547 0.603975 GTCCGCAAGCCCTCATATCC 60.604 60.000 0.00 0.00 0.00 2.59
4447 4548 0.764369 TCCGCAAGCCCTCATATCCT 60.764 55.000 0.00 0.00 0.00 3.24
4448 4549 0.321122 CCGCAAGCCCTCATATCCTC 60.321 60.000 0.00 0.00 0.00 3.71
4449 4550 0.321122 CGCAAGCCCTCATATCCTCC 60.321 60.000 0.00 0.00 0.00 4.30
4450 4551 0.037447 GCAAGCCCTCATATCCTCCC 59.963 60.000 0.00 0.00 0.00 4.30
4451 4552 0.695347 CAAGCCCTCATATCCTCCCC 59.305 60.000 0.00 0.00 0.00 4.81
4452 4553 0.271927 AAGCCCTCATATCCTCCCCA 59.728 55.000 0.00 0.00 0.00 4.96
4453 4554 0.500074 AGCCCTCATATCCTCCCCAT 59.500 55.000 0.00 0.00 0.00 4.00
4454 4555 1.730470 AGCCCTCATATCCTCCCCATA 59.270 52.381 0.00 0.00 0.00 2.74
4455 4556 2.323482 AGCCCTCATATCCTCCCCATAT 59.677 50.000 0.00 0.00 0.00 1.78
4456 4557 3.126453 GCCCTCATATCCTCCCCATATT 58.874 50.000 0.00 0.00 0.00 1.28
4457 4558 3.529319 GCCCTCATATCCTCCCCATATTT 59.471 47.826 0.00 0.00 0.00 1.40
4458 4559 4.629694 GCCCTCATATCCTCCCCATATTTG 60.630 50.000 0.00 0.00 0.00 2.32
4459 4560 4.790246 CCCTCATATCCTCCCCATATTTGA 59.210 45.833 0.00 0.00 0.00 2.69
4460 4561 5.104193 CCCTCATATCCTCCCCATATTTGAG 60.104 48.000 0.00 0.00 32.06 3.02
4461 4562 5.728253 CCTCATATCCTCCCCATATTTGAGA 59.272 44.000 0.00 0.00 33.26 3.27
4462 4563 6.389278 CCTCATATCCTCCCCATATTTGAGAT 59.611 42.308 0.00 0.00 33.26 2.75
4463 4564 7.204243 TCATATCCTCCCCATATTTGAGATG 57.796 40.000 0.00 0.00 0.00 2.90
4464 4565 4.942363 ATCCTCCCCATATTTGAGATGG 57.058 45.455 0.00 0.00 43.12 3.51
4465 4566 3.953352 TCCTCCCCATATTTGAGATGGA 58.047 45.455 3.27 0.00 45.89 3.41
4466 4567 4.516283 TCCTCCCCATATTTGAGATGGAT 58.484 43.478 3.27 0.00 45.89 3.41
4467 4568 5.675077 TCCTCCCCATATTTGAGATGGATA 58.325 41.667 3.27 0.00 45.89 2.59
4468 4569 6.282576 TCCTCCCCATATTTGAGATGGATAT 58.717 40.000 3.27 0.00 45.89 1.63
4469 4570 7.438417 TCCTCCCCATATTTGAGATGGATATA 58.562 38.462 3.27 0.00 45.89 0.86
4470 4571 7.911655 TCCTCCCCATATTTGAGATGGATATAA 59.088 37.037 3.27 0.00 45.89 0.98
4471 4572 8.216423 CCTCCCCATATTTGAGATGGATATAAG 58.784 40.741 3.27 0.00 45.89 1.73
4472 4573 8.106017 TCCCCATATTTGAGATGGATATAAGG 57.894 38.462 3.27 0.00 45.89 2.69
4473 4574 7.129349 TCCCCATATTTGAGATGGATATAAGGG 59.871 40.741 3.27 0.00 45.89 3.95
4474 4575 7.091811 CCCCATATTTGAGATGGATATAAGGGT 60.092 40.741 3.27 0.00 45.89 4.34
4475 4576 8.339247 CCCATATTTGAGATGGATATAAGGGTT 58.661 37.037 3.27 0.00 45.89 4.11
4476 4577 9.401058 CCATATTTGAGATGGATATAAGGGTTC 57.599 37.037 0.00 0.00 45.89 3.62
4477 4578 9.102757 CATATTTGAGATGGATATAAGGGTTCG 57.897 37.037 0.00 0.00 0.00 3.95
4478 4579 4.537135 TGAGATGGATATAAGGGTTCGC 57.463 45.455 0.00 0.00 0.00 4.70
4479 4580 3.056821 TGAGATGGATATAAGGGTTCGCG 60.057 47.826 0.00 0.00 0.00 5.87
4480 4581 2.233922 AGATGGATATAAGGGTTCGCGG 59.766 50.000 6.13 0.00 0.00 6.46
4481 4582 1.707106 TGGATATAAGGGTTCGCGGA 58.293 50.000 6.13 0.00 0.00 5.54
4482 4583 1.342174 TGGATATAAGGGTTCGCGGAC 59.658 52.381 9.70 9.70 0.00 4.79
4483 4584 1.342174 GGATATAAGGGTTCGCGGACA 59.658 52.381 21.18 0.00 0.00 4.02
4484 4585 2.609737 GGATATAAGGGTTCGCGGACAG 60.610 54.545 21.18 0.00 0.00 3.51
4485 4586 0.103572 TATAAGGGTTCGCGGACAGC 59.896 55.000 21.18 7.19 43.95 4.40
4486 4587 2.588856 ATAAGGGTTCGCGGACAGCC 62.589 60.000 21.18 16.10 44.76 4.85
4505 4606 4.107029 CCGGGCGTATAGGGATGA 57.893 61.111 0.00 0.00 0.00 2.92
4506 4607 2.591915 CCGGGCGTATAGGGATGAT 58.408 57.895 0.00 0.00 0.00 2.45
4507 4608 1.771565 CCGGGCGTATAGGGATGATA 58.228 55.000 0.00 0.00 0.00 2.15
4508 4609 2.317040 CCGGGCGTATAGGGATGATAT 58.683 52.381 0.00 0.00 0.00 1.63
4509 4610 2.035961 CCGGGCGTATAGGGATGATATG 59.964 54.545 0.00 0.00 0.00 1.78
4510 4611 2.035961 CGGGCGTATAGGGATGATATGG 59.964 54.545 0.00 0.00 0.00 2.74
4511 4612 2.368875 GGGCGTATAGGGATGATATGGG 59.631 54.545 0.00 0.00 0.00 4.00
4512 4613 2.368875 GGCGTATAGGGATGATATGGGG 59.631 54.545 0.00 0.00 0.00 4.96
4513 4614 2.368875 GCGTATAGGGATGATATGGGGG 59.631 54.545 0.00 0.00 0.00 5.40
4552 4653 3.944055 TTTTCTTCTCTCTCCTGTCCG 57.056 47.619 0.00 0.00 0.00 4.79
4553 4654 1.840737 TTCTTCTCTCTCCTGTCCGG 58.159 55.000 0.00 0.00 0.00 5.14
4554 4655 0.699399 TCTTCTCTCTCCTGTCCGGT 59.301 55.000 0.00 0.00 0.00 5.28
4555 4656 1.099689 CTTCTCTCTCCTGTCCGGTC 58.900 60.000 0.00 0.00 0.00 4.79
4556 4657 0.404426 TTCTCTCTCCTGTCCGGTCA 59.596 55.000 0.00 0.00 0.00 4.02
4557 4658 0.322636 TCTCTCTCCTGTCCGGTCAC 60.323 60.000 0.00 0.00 0.00 3.67
4558 4659 0.322997 CTCTCTCCTGTCCGGTCACT 60.323 60.000 0.00 0.00 0.00 3.41
4559 4660 0.609406 TCTCTCCTGTCCGGTCACTG 60.609 60.000 0.00 0.00 0.00 3.66
4560 4661 0.609406 CTCTCCTGTCCGGTCACTGA 60.609 60.000 0.00 0.00 0.00 3.41
4561 4662 0.894184 TCTCCTGTCCGGTCACTGAC 60.894 60.000 0.00 0.00 0.00 3.51
4584 4685 4.961511 GCGTCCGCGGGCATATGA 62.962 66.667 31.65 2.76 38.78 2.15
4585 4686 2.734723 CGTCCGCGGGCATATGAG 60.735 66.667 31.65 8.31 0.00 2.90
4586 4687 2.357517 GTCCGCGGGCATATGAGG 60.358 66.667 27.96 0.00 0.00 3.86
4587 4688 3.625897 TCCGCGGGCATATGAGGG 61.626 66.667 27.83 5.24 0.00 4.30
4588 4689 4.704833 CCGCGGGCATATGAGGGG 62.705 72.222 20.10 10.48 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.367421 CCGTTGAATTCAAACAAGATCGTTA 58.633 36.000 22.07 0.00 37.63 3.18
493 494 4.796775 GGCAAACCCCCATCCCCC 62.797 72.222 0.00 0.00 0.00 5.40
502 503 1.006688 AAACGAATGCGGCAAACCC 60.007 52.632 6.82 0.00 43.17 4.11
566 568 4.152759 TCCGCTAATAAAACAAAGTGTCCG 59.847 41.667 0.00 0.00 0.00 4.79
586 595 2.510238 CTCCTCAGGCGCTTTCCG 60.510 66.667 7.64 0.00 40.75 4.30
627 636 1.227234 TATCCGTGGCATGCTCGTG 60.227 57.895 24.74 18.68 0.00 4.35
628 637 1.227263 GTATCCGTGGCATGCTCGT 60.227 57.895 24.74 15.12 0.00 4.18
637 646 2.408050 GATTGCTAGCAGTATCCGTGG 58.592 52.381 18.45 0.00 0.00 4.94
640 649 1.702886 CGGATTGCTAGCAGTATCCG 58.297 55.000 37.47 37.47 43.74 4.18
672 681 7.559590 ACATAAGCAATGGACTAATGAGAAC 57.440 36.000 4.34 0.00 40.16 3.01
688 697 5.754782 AGAACATGTGGGATAACATAAGCA 58.245 37.500 0.00 0.00 38.75 3.91
694 703 4.991776 TGGAAAGAACATGTGGGATAACA 58.008 39.130 0.00 0.00 0.00 2.41
731 740 3.898123 TGGCTTATCTGAGATGTACTCCC 59.102 47.826 4.96 0.00 44.34 4.30
987 996 2.142319 GTCGCCATTTGCAACCAAAAT 58.858 42.857 0.00 0.00 43.58 1.82
1524 1533 2.818169 TTCCTTCAGTGCAGGGCGT 61.818 57.895 9.08 0.00 31.50 5.68
1638 1647 1.885887 GCAGGGTCAGTTGCACATTTA 59.114 47.619 0.00 0.00 40.02 1.40
1715 1724 1.140252 GCCCCTGAGCGGAGTAATTTA 59.860 52.381 0.00 0.00 33.16 1.40
2467 2476 7.332430 TGCGCTACTAATAACTAACATGTGTTT 59.668 33.333 9.73 0.00 39.31 2.83
2659 2674 5.888982 TTTTTGGGGGCTAAATACAACAA 57.111 34.783 0.00 0.00 0.00 2.83
2735 2788 0.921896 ATGAGGCAGTTGGGTGCTAT 59.078 50.000 0.00 0.00 43.45 2.97
2767 2820 9.522804 GTACATTAACTACTCTGGATTCTGAAG 57.477 37.037 0.00 0.00 0.00 3.02
2816 2872 6.381801 ACATGCAACTATTTAAGCACAGAAC 58.618 36.000 0.00 0.00 40.14 3.01
2850 2906 9.699410 ACAAATGGAAACTGGATAAGATGATAA 57.301 29.630 0.00 0.00 0.00 1.75
2852 2908 8.472413 CAACAAATGGAAACTGGATAAGATGAT 58.528 33.333 0.00 0.00 0.00 2.45
2934 2996 1.425412 TTAGCTCGCGGTTCTTCAAC 58.575 50.000 6.13 0.00 0.00 3.18
3118 3180 1.376553 GAGGAGCTGAAGTGCCACC 60.377 63.158 0.00 0.00 0.00 4.61
3315 3383 1.320344 CCCTGTACTGCTCGCCACTA 61.320 60.000 0.00 0.00 0.00 2.74
3316 3384 2.650116 CCCTGTACTGCTCGCCACT 61.650 63.158 0.00 0.00 0.00 4.00
3345 3419 1.673923 GGGTTGTACTGGTACGGCTTC 60.674 57.143 6.44 0.00 39.14 3.86
3576 3656 0.459237 ACATCGTCTACTGCTGCTGC 60.459 55.000 8.89 8.89 40.20 5.25
3590 3670 2.093973 AGGGTAGTTTCAGCTCACATCG 60.094 50.000 0.00 0.00 0.00 3.84
3646 3726 4.048470 GGGTGGTTCCAGGGAGCC 62.048 72.222 13.75 13.75 44.35 4.70
3667 3747 2.530701 ACAACTCCACCACTCCTCTAG 58.469 52.381 0.00 0.00 0.00 2.43
3705 3790 3.099905 AGCACCTACAAGATGCACTAGA 58.900 45.455 0.00 0.00 37.14 2.43
3792 3888 4.848357 ACTGGCAGTTAAGTAAGATGCAT 58.152 39.130 15.88 0.00 38.63 3.96
3824 3923 4.860907 GGCAACATTAATGCAGACAGAAAG 59.139 41.667 15.48 0.00 45.60 2.62
3840 3939 1.363443 CAAGCAACCACGGCAACAT 59.637 52.632 0.00 0.00 0.00 2.71
3868 3968 1.269206 ACGCAAACCAACAGCTTCATG 60.269 47.619 0.00 0.00 0.00 3.07
3869 3969 1.032014 ACGCAAACCAACAGCTTCAT 58.968 45.000 0.00 0.00 0.00 2.57
3870 3970 0.814457 AACGCAAACCAACAGCTTCA 59.186 45.000 0.00 0.00 0.00 3.02
3871 3971 1.852280 GAAACGCAAACCAACAGCTTC 59.148 47.619 0.00 0.00 0.00 3.86
3873 3973 1.102978 AGAAACGCAAACCAACAGCT 58.897 45.000 0.00 0.00 0.00 4.24
3874 3974 2.766970 TAGAAACGCAAACCAACAGC 57.233 45.000 0.00 0.00 0.00 4.40
3875 3975 4.035017 CACTTAGAAACGCAAACCAACAG 58.965 43.478 0.00 0.00 0.00 3.16
3901 4002 4.444056 GCACATCAAACACACACATAAACC 59.556 41.667 0.00 0.00 0.00 3.27
3905 4006 4.907879 TTGCACATCAAACACACACATA 57.092 36.364 0.00 0.00 0.00 2.29
3906 4007 3.797451 TTGCACATCAAACACACACAT 57.203 38.095 0.00 0.00 0.00 3.21
3931 4032 3.004734 ACGCTCTCATCCAAAAAGGTTTG 59.995 43.478 0.00 0.00 43.26 2.93
3966 4067 2.957402 TCTGTTTGTGCCTCCATCTT 57.043 45.000 0.00 0.00 0.00 2.40
3977 4078 6.272822 AGCTTTTCAACTTCTTCTGTTTGT 57.727 33.333 0.00 0.00 0.00 2.83
3986 4087 2.135933 CCGACGAGCTTTTCAACTTCT 58.864 47.619 0.00 0.00 0.00 2.85
4001 4102 0.109086 AAGACAGCACAGATCCGACG 60.109 55.000 0.00 0.00 0.00 5.12
4002 4103 1.634702 GAAGACAGCACAGATCCGAC 58.365 55.000 0.00 0.00 0.00 4.79
4009 4110 4.489810 CTGTTACTAGGAAGACAGCACAG 58.510 47.826 0.00 0.00 33.87 3.66
4065 4166 4.149922 CAGTTCGATCGAAAAACTAGCACA 59.850 41.667 30.61 2.68 35.75 4.57
4076 4177 2.159612 CGTAGTGACCAGTTCGATCGAA 60.160 50.000 25.96 25.96 0.00 3.71
4083 4184 0.669625 GTGGGCGTAGTGACCAGTTC 60.670 60.000 0.00 0.00 34.39 3.01
4087 4188 3.056458 CAGTGGGCGTAGTGACCA 58.944 61.111 0.00 0.00 0.00 4.02
4088 4189 2.434359 GCAGTGGGCGTAGTGACC 60.434 66.667 0.00 0.00 0.00 4.02
4089 4190 2.434359 GGCAGTGGGCGTAGTGAC 60.434 66.667 0.00 0.00 46.16 3.67
4107 4208 4.828296 CATGGGGGCTGGAGTGGC 62.828 72.222 0.00 0.00 0.00 5.01
4108 4209 4.133373 CCATGGGGGCTGGAGTGG 62.133 72.222 2.85 0.00 35.70 4.00
4119 4220 3.419580 TAGGTGGCTGCCCATGGG 61.420 66.667 27.87 27.87 44.51 4.00
4120 4221 2.124151 GTAGGTGGCTGCCCATGG 60.124 66.667 17.53 4.14 44.51 3.66
4121 4222 2.124151 GGTAGGTGGCTGCCCATG 60.124 66.667 17.53 0.00 44.51 3.66
4122 4223 3.420482 GGGTAGGTGGCTGCCCAT 61.420 66.667 17.53 7.88 46.73 4.00
4126 4227 3.798511 GAGGGGGTAGGTGGCTGC 61.799 72.222 0.00 0.00 0.00 5.25
4127 4228 2.041265 AGAGGGGGTAGGTGGCTG 59.959 66.667 0.00 0.00 0.00 4.85
4128 4229 2.369001 GAGAGGGGGTAGGTGGCT 59.631 66.667 0.00 0.00 0.00 4.75
4129 4230 3.155167 CGAGAGGGGGTAGGTGGC 61.155 72.222 0.00 0.00 0.00 5.01
4141 4242 2.611225 AAATGCTCTAAGCCCGAGAG 57.389 50.000 3.34 3.34 41.51 3.20
4142 4243 2.764010 TGTAAATGCTCTAAGCCCGAGA 59.236 45.455 0.00 0.00 41.51 4.04
4143 4244 3.179443 TGTAAATGCTCTAAGCCCGAG 57.821 47.619 0.00 0.00 41.51 4.63
4144 4245 3.267483 GTTGTAAATGCTCTAAGCCCGA 58.733 45.455 0.00 0.00 41.51 5.14
4145 4246 2.354821 GGTTGTAAATGCTCTAAGCCCG 59.645 50.000 0.00 0.00 41.51 6.13
4146 4247 2.354821 CGGTTGTAAATGCTCTAAGCCC 59.645 50.000 0.00 0.00 41.51 5.19
4147 4248 2.354821 CCGGTTGTAAATGCTCTAAGCC 59.645 50.000 0.00 0.00 41.51 4.35
4148 4249 3.063588 GTCCGGTTGTAAATGCTCTAAGC 59.936 47.826 0.00 0.00 42.82 3.09
4149 4250 4.250464 TGTCCGGTTGTAAATGCTCTAAG 58.750 43.478 0.00 0.00 0.00 2.18
4150 4251 4.274602 TGTCCGGTTGTAAATGCTCTAA 57.725 40.909 0.00 0.00 0.00 2.10
4151 4252 3.965379 TGTCCGGTTGTAAATGCTCTA 57.035 42.857 0.00 0.00 0.00 2.43
4152 4253 2.851263 TGTCCGGTTGTAAATGCTCT 57.149 45.000 0.00 0.00 0.00 4.09
4153 4254 3.002348 GCTATGTCCGGTTGTAAATGCTC 59.998 47.826 0.00 0.00 0.00 4.26
4154 4255 2.943033 GCTATGTCCGGTTGTAAATGCT 59.057 45.455 0.00 0.00 0.00 3.79
4155 4256 2.680841 TGCTATGTCCGGTTGTAAATGC 59.319 45.455 0.00 0.00 0.00 3.56
4156 4257 4.955925 TTGCTATGTCCGGTTGTAAATG 57.044 40.909 0.00 0.00 0.00 2.32
4157 4258 6.995686 TCATATTGCTATGTCCGGTTGTAAAT 59.004 34.615 0.00 0.00 36.80 1.40
4158 4259 6.259167 GTCATATTGCTATGTCCGGTTGTAAA 59.741 38.462 0.00 0.00 36.80 2.01
4159 4260 5.756347 GTCATATTGCTATGTCCGGTTGTAA 59.244 40.000 0.00 0.00 36.80 2.41
4160 4261 5.294356 GTCATATTGCTATGTCCGGTTGTA 58.706 41.667 0.00 0.00 36.80 2.41
4161 4262 4.127171 GTCATATTGCTATGTCCGGTTGT 58.873 43.478 0.00 0.00 36.80 3.32
4162 4263 3.498397 GGTCATATTGCTATGTCCGGTTG 59.502 47.826 0.00 0.00 35.03 3.77
4163 4264 3.496160 GGGTCATATTGCTATGTCCGGTT 60.496 47.826 0.00 0.00 41.66 4.44
4164 4265 2.038557 GGGTCATATTGCTATGTCCGGT 59.961 50.000 0.00 0.00 41.66 5.28
4165 4266 2.615493 GGGGTCATATTGCTATGTCCGG 60.615 54.545 0.00 0.00 41.66 5.14
4166 4267 2.303022 AGGGGTCATATTGCTATGTCCG 59.697 50.000 4.10 0.00 41.66 4.79
4167 4268 4.286032 TGTAGGGGTCATATTGCTATGTCC 59.714 45.833 2.02 2.02 40.67 4.02
4168 4269 5.483685 TGTAGGGGTCATATTGCTATGTC 57.516 43.478 0.00 0.00 36.80 3.06
4169 4270 6.352222 GCTATGTAGGGGTCATATTGCTATGT 60.352 42.308 0.00 0.00 36.80 2.29
4170 4271 6.051717 GCTATGTAGGGGTCATATTGCTATG 58.948 44.000 0.00 0.00 36.79 2.23
4171 4272 5.726308 TGCTATGTAGGGGTCATATTGCTAT 59.274 40.000 0.00 0.00 0.00 2.97
4172 4273 5.090845 TGCTATGTAGGGGTCATATTGCTA 58.909 41.667 0.00 0.00 0.00 3.49
4173 4274 3.909995 TGCTATGTAGGGGTCATATTGCT 59.090 43.478 0.00 0.00 0.00 3.91
4174 4275 4.286297 TGCTATGTAGGGGTCATATTGC 57.714 45.455 0.00 0.00 0.00 3.56
4175 4276 8.267183 TCATATTGCTATGTAGGGGTCATATTG 58.733 37.037 0.00 0.00 36.80 1.90
4176 4277 8.267894 GTCATATTGCTATGTAGGGGTCATATT 58.732 37.037 0.00 0.00 36.80 1.28
4177 4278 7.147479 GGTCATATTGCTATGTAGGGGTCATAT 60.147 40.741 0.00 0.00 36.80 1.78
4178 4279 6.156256 GGTCATATTGCTATGTAGGGGTCATA 59.844 42.308 0.00 0.00 36.80 2.15
4179 4280 5.045578 GGTCATATTGCTATGTAGGGGTCAT 60.046 44.000 0.00 0.00 36.80 3.06
4180 4281 4.286032 GGTCATATTGCTATGTAGGGGTCA 59.714 45.833 0.00 0.00 36.80 4.02
4181 4282 4.323562 GGGTCATATTGCTATGTAGGGGTC 60.324 50.000 0.00 0.00 36.80 4.46
4182 4283 3.587506 GGGTCATATTGCTATGTAGGGGT 59.412 47.826 0.00 0.00 36.80 4.95
4183 4284 3.054361 GGGGTCATATTGCTATGTAGGGG 60.054 52.174 0.00 0.00 36.80 4.79
4184 4285 3.846588 AGGGGTCATATTGCTATGTAGGG 59.153 47.826 0.00 0.00 36.80 3.53
4185 4286 5.505181 AAGGGGTCATATTGCTATGTAGG 57.495 43.478 0.00 0.00 36.80 3.18
4186 4287 8.950210 CATTTAAGGGGTCATATTGCTATGTAG 58.050 37.037 0.00 0.00 36.80 2.74
4187 4288 7.393234 GCATTTAAGGGGTCATATTGCTATGTA 59.607 37.037 0.00 0.00 36.80 2.29
4188 4289 6.209391 GCATTTAAGGGGTCATATTGCTATGT 59.791 38.462 0.00 0.00 36.80 2.29
4189 4290 6.435277 AGCATTTAAGGGGTCATATTGCTATG 59.565 38.462 0.00 0.00 36.25 2.23
4190 4291 6.555711 AGCATTTAAGGGGTCATATTGCTAT 58.444 36.000 0.00 0.00 36.25 2.97
4191 4292 5.952387 AGCATTTAAGGGGTCATATTGCTA 58.048 37.500 0.00 0.00 36.25 3.49
4192 4293 4.808042 AGCATTTAAGGGGTCATATTGCT 58.192 39.130 0.00 0.00 33.37 3.91
4193 4294 5.291971 CAAGCATTTAAGGGGTCATATTGC 58.708 41.667 0.00 0.00 0.00 3.56
4194 4295 5.291971 GCAAGCATTTAAGGGGTCATATTG 58.708 41.667 0.00 0.00 0.00 1.90
4195 4296 4.037923 CGCAAGCATTTAAGGGGTCATATT 59.962 41.667 0.00 0.00 0.00 1.28
4196 4297 3.569701 CGCAAGCATTTAAGGGGTCATAT 59.430 43.478 0.00 0.00 0.00 1.78
4197 4298 2.948979 CGCAAGCATTTAAGGGGTCATA 59.051 45.455 0.00 0.00 0.00 2.15
4198 4299 1.750778 CGCAAGCATTTAAGGGGTCAT 59.249 47.619 0.00 0.00 0.00 3.06
4199 4300 1.173043 CGCAAGCATTTAAGGGGTCA 58.827 50.000 0.00 0.00 0.00 4.02
4200 4301 0.455815 CCGCAAGCATTTAAGGGGTC 59.544 55.000 0.00 0.00 0.00 4.46
4201 4302 0.039035 TCCGCAAGCATTTAAGGGGT 59.961 50.000 0.00 0.00 35.75 4.95
4202 4303 0.455815 GTCCGCAAGCATTTAAGGGG 59.544 55.000 0.00 0.00 35.61 4.79
4203 4304 0.098728 CGTCCGCAAGCATTTAAGGG 59.901 55.000 0.00 0.00 0.00 3.95
4204 4305 0.523335 GCGTCCGCAAGCATTTAAGG 60.523 55.000 6.82 0.00 41.49 2.69
4205 4306 0.857311 CGCGTCCGCAAGCATTTAAG 60.857 55.000 12.58 0.00 42.06 1.85
4206 4307 1.133664 CGCGTCCGCAAGCATTTAA 59.866 52.632 12.58 0.00 42.06 1.52
4207 4308 2.781957 CGCGTCCGCAAGCATTTA 59.218 55.556 12.58 0.00 42.06 1.40
4229 4330 1.729838 GACACGTCTGGTCGCTGAC 60.730 63.158 0.00 0.79 0.00 3.51
4230 4331 2.643272 GACACGTCTGGTCGCTGA 59.357 61.111 0.00 0.00 0.00 4.26
4231 4332 2.430921 GGACACGTCTGGTCGCTG 60.431 66.667 0.00 0.00 36.12 5.18
4232 4333 4.039357 CGGACACGTCTGGTCGCT 62.039 66.667 0.00 0.00 36.12 4.93
4243 4344 1.886886 TAAGGGCTCAAAACGGACAC 58.113 50.000 0.00 0.00 0.00 3.67
4244 4345 2.871096 ATAAGGGCTCAAAACGGACA 57.129 45.000 0.00 0.00 0.00 4.02
4245 4346 5.220989 GGATAAATAAGGGCTCAAAACGGAC 60.221 44.000 0.00 0.00 0.00 4.79
4246 4347 4.885325 GGATAAATAAGGGCTCAAAACGGA 59.115 41.667 0.00 0.00 0.00 4.69
4247 4348 4.642885 TGGATAAATAAGGGCTCAAAACGG 59.357 41.667 0.00 0.00 0.00 4.44
4248 4349 5.828299 TGGATAAATAAGGGCTCAAAACG 57.172 39.130 0.00 0.00 0.00 3.60
4249 4350 7.428826 CAGATGGATAAATAAGGGCTCAAAAC 58.571 38.462 0.00 0.00 0.00 2.43
4250 4351 6.040842 GCAGATGGATAAATAAGGGCTCAAAA 59.959 38.462 0.00 0.00 0.00 2.44
4251 4352 5.536161 GCAGATGGATAAATAAGGGCTCAAA 59.464 40.000 0.00 0.00 0.00 2.69
4252 4353 5.072741 GCAGATGGATAAATAAGGGCTCAA 58.927 41.667 0.00 0.00 0.00 3.02
4253 4354 4.655963 GCAGATGGATAAATAAGGGCTCA 58.344 43.478 0.00 0.00 0.00 4.26
4254 4355 3.686726 CGCAGATGGATAAATAAGGGCTC 59.313 47.826 0.00 0.00 0.00 4.70
4255 4356 3.679389 CGCAGATGGATAAATAAGGGCT 58.321 45.455 0.00 0.00 0.00 5.19
4256 4357 2.162408 GCGCAGATGGATAAATAAGGGC 59.838 50.000 0.30 0.00 0.00 5.19
4257 4358 3.411446 TGCGCAGATGGATAAATAAGGG 58.589 45.455 5.66 0.00 0.00 3.95
4258 4359 3.120060 GCTGCGCAGATGGATAAATAAGG 60.120 47.826 40.21 9.77 0.00 2.69
4259 4360 3.120060 GGCTGCGCAGATGGATAAATAAG 60.120 47.826 40.21 10.49 0.00 1.73
4260 4361 2.813754 GGCTGCGCAGATGGATAAATAA 59.186 45.455 40.21 0.00 0.00 1.40
4261 4362 2.224499 TGGCTGCGCAGATGGATAAATA 60.224 45.455 40.21 10.02 0.00 1.40
4262 4363 1.242076 GGCTGCGCAGATGGATAAAT 58.758 50.000 40.21 0.00 0.00 1.40
4263 4364 0.107263 TGGCTGCGCAGATGGATAAA 60.107 50.000 40.21 12.53 0.00 1.40
4264 4365 0.815213 GTGGCTGCGCAGATGGATAA 60.815 55.000 40.21 13.60 0.00 1.75
4265 4366 1.227645 GTGGCTGCGCAGATGGATA 60.228 57.895 40.21 15.58 0.00 2.59
4266 4367 2.515523 GTGGCTGCGCAGATGGAT 60.516 61.111 40.21 0.00 0.00 3.41
4267 4368 4.019312 TGTGGCTGCGCAGATGGA 62.019 61.111 40.21 17.85 0.00 3.41
4268 4369 2.857575 TAGTGTGGCTGCGCAGATGG 62.858 60.000 40.21 16.28 0.00 3.51
4269 4370 1.448365 TAGTGTGGCTGCGCAGATG 60.448 57.895 40.21 16.70 0.00 2.90
4270 4371 1.448540 GTAGTGTGGCTGCGCAGAT 60.449 57.895 40.21 19.03 0.00 2.90
4271 4372 2.048222 GTAGTGTGGCTGCGCAGA 60.048 61.111 40.21 18.77 0.00 4.26
4272 4373 0.389817 TAAGTAGTGTGGCTGCGCAG 60.390 55.000 32.83 32.83 34.85 5.18
4273 4374 0.249120 ATAAGTAGTGTGGCTGCGCA 59.751 50.000 10.98 10.98 34.85 6.09
4274 4375 1.369625 AATAAGTAGTGTGGCTGCGC 58.630 50.000 0.00 0.00 34.85 6.09
4275 4376 4.154195 AGAAAAATAAGTAGTGTGGCTGCG 59.846 41.667 0.00 0.00 34.85 5.18
4276 4377 5.392057 GGAGAAAAATAAGTAGTGTGGCTGC 60.392 44.000 0.00 0.00 0.00 5.25
4277 4378 5.940470 AGGAGAAAAATAAGTAGTGTGGCTG 59.060 40.000 0.00 0.00 0.00 4.85
4278 4379 6.128138 AGGAGAAAAATAAGTAGTGTGGCT 57.872 37.500 0.00 0.00 0.00 4.75
4279 4380 5.938125 TGAGGAGAAAAATAAGTAGTGTGGC 59.062 40.000 0.00 0.00 0.00 5.01
4280 4381 9.838339 ATATGAGGAGAAAAATAAGTAGTGTGG 57.162 33.333 0.00 0.00 0.00 4.17
4285 4386 9.197694 CGGACATATGAGGAGAAAAATAAGTAG 57.802 37.037 10.38 0.00 0.00 2.57
4286 4387 8.148351 CCGGACATATGAGGAGAAAAATAAGTA 58.852 37.037 10.38 0.00 0.00 2.24
4287 4388 6.992715 CCGGACATATGAGGAGAAAAATAAGT 59.007 38.462 10.38 0.00 0.00 2.24
4288 4389 6.992715 ACCGGACATATGAGGAGAAAAATAAG 59.007 38.462 9.46 0.00 0.00 1.73
4289 4390 6.895782 ACCGGACATATGAGGAGAAAAATAA 58.104 36.000 9.46 0.00 0.00 1.40
4290 4391 6.099125 TGACCGGACATATGAGGAGAAAAATA 59.901 38.462 9.46 0.00 0.00 1.40
4291 4392 5.104527 TGACCGGACATATGAGGAGAAAAAT 60.105 40.000 9.46 0.00 0.00 1.82
4292 4393 4.224147 TGACCGGACATATGAGGAGAAAAA 59.776 41.667 9.46 0.00 0.00 1.94
4293 4394 3.772572 TGACCGGACATATGAGGAGAAAA 59.227 43.478 9.46 0.00 0.00 2.29
4294 4395 3.132289 GTGACCGGACATATGAGGAGAAA 59.868 47.826 9.46 0.00 0.00 2.52
4295 4396 2.693591 GTGACCGGACATATGAGGAGAA 59.306 50.000 9.46 0.00 0.00 2.87
4296 4397 2.091830 AGTGACCGGACATATGAGGAGA 60.092 50.000 9.46 0.11 0.00 3.71
4297 4398 2.311463 AGTGACCGGACATATGAGGAG 58.689 52.381 9.46 0.00 0.00 3.69
4298 4399 2.430694 CAAGTGACCGGACATATGAGGA 59.569 50.000 9.46 0.00 0.00 3.71
4299 4400 2.826428 CAAGTGACCGGACATATGAGG 58.174 52.381 9.46 11.80 0.00 3.86
4300 4401 2.205074 GCAAGTGACCGGACATATGAG 58.795 52.381 20.15 7.83 0.00 2.90
4301 4402 1.552792 TGCAAGTGACCGGACATATGA 59.447 47.619 20.15 7.56 0.00 2.15
4302 4403 1.665679 GTGCAAGTGACCGGACATATG 59.334 52.381 9.46 12.83 0.00 1.78
4303 4404 1.739035 CGTGCAAGTGACCGGACATAT 60.739 52.381 9.46 0.00 0.00 1.78
4304 4405 0.389296 CGTGCAAGTGACCGGACATA 60.389 55.000 9.46 0.00 0.00 2.29
4305 4406 1.667830 CGTGCAAGTGACCGGACAT 60.668 57.895 9.46 0.00 0.00 3.06
4306 4407 2.279851 CGTGCAAGTGACCGGACA 60.280 61.111 9.46 5.04 0.00 4.02
4307 4408 2.279918 ACGTGCAAGTGACCGGAC 60.280 61.111 9.46 1.07 0.00 4.79
4308 4409 2.279851 CACGTGCAAGTGACCGGA 60.280 61.111 26.06 0.00 44.43 5.14
4309 4410 2.279851 TCACGTGCAAGTGACCGG 60.280 61.111 28.20 0.00 45.18 5.28
4314 4415 1.805943 TCCATCAATCACGTGCAAGTG 59.194 47.619 24.56 24.56 43.11 3.16
4315 4416 2.079158 CTCCATCAATCACGTGCAAGT 58.921 47.619 11.67 0.00 0.00 3.16
4316 4417 2.094894 GTCTCCATCAATCACGTGCAAG 59.905 50.000 11.67 0.00 0.00 4.01
4317 4418 2.076100 GTCTCCATCAATCACGTGCAA 58.924 47.619 11.67 0.00 0.00 4.08
4318 4419 1.001860 TGTCTCCATCAATCACGTGCA 59.998 47.619 11.67 0.00 0.00 4.57
4319 4420 1.725641 TGTCTCCATCAATCACGTGC 58.274 50.000 11.67 0.00 0.00 5.34
4320 4421 3.996363 TCTTTGTCTCCATCAATCACGTG 59.004 43.478 9.94 9.94 0.00 4.49
4321 4422 4.021104 TCTCTTTGTCTCCATCAATCACGT 60.021 41.667 0.00 0.00 0.00 4.49
4322 4423 4.498241 TCTCTTTGTCTCCATCAATCACG 58.502 43.478 0.00 0.00 0.00 4.35
4323 4424 5.728471 TCTCTCTTTGTCTCCATCAATCAC 58.272 41.667 0.00 0.00 0.00 3.06
4324 4425 5.718607 TCTCTCTCTTTGTCTCCATCAATCA 59.281 40.000 0.00 0.00 0.00 2.57
4325 4426 6.219417 TCTCTCTCTTTGTCTCCATCAATC 57.781 41.667 0.00 0.00 0.00 2.67
4326 4427 6.617782 TTCTCTCTCTTTGTCTCCATCAAT 57.382 37.500 0.00 0.00 0.00 2.57
4327 4428 6.425210 TTTCTCTCTCTTTGTCTCCATCAA 57.575 37.500 0.00 0.00 0.00 2.57
4328 4429 6.617782 ATTTCTCTCTCTTTGTCTCCATCA 57.382 37.500 0.00 0.00 0.00 3.07
4329 4430 9.442047 TTTTATTTCTCTCTCTTTGTCTCCATC 57.558 33.333 0.00 0.00 0.00 3.51
4330 4431 9.447157 CTTTTATTTCTCTCTCTTTGTCTCCAT 57.553 33.333 0.00 0.00 0.00 3.41
4331 4432 8.651389 TCTTTTATTTCTCTCTCTTTGTCTCCA 58.349 33.333 0.00 0.00 0.00 3.86
4332 4433 9.495572 TTCTTTTATTTCTCTCTCTTTGTCTCC 57.504 33.333 0.00 0.00 0.00 3.71
4334 4435 8.983724 CGTTCTTTTATTTCTCTCTCTTTGTCT 58.016 33.333 0.00 0.00 0.00 3.41
4335 4436 8.979574 TCGTTCTTTTATTTCTCTCTCTTTGTC 58.020 33.333 0.00 0.00 0.00 3.18
4336 4437 8.888579 TCGTTCTTTTATTTCTCTCTCTTTGT 57.111 30.769 0.00 0.00 0.00 2.83
4355 4456 9.952188 CCTTTTTCTCTTTTCTTTATTCGTTCT 57.048 29.630 0.00 0.00 0.00 3.01
4356 4457 9.731819 ACCTTTTTCTCTTTTCTTTATTCGTTC 57.268 29.630 0.00 0.00 0.00 3.95
4357 4458 9.516314 CACCTTTTTCTCTTTTCTTTATTCGTT 57.484 29.630 0.00 0.00 0.00 3.85
4358 4459 8.135529 CCACCTTTTTCTCTTTTCTTTATTCGT 58.864 33.333 0.00 0.00 0.00 3.85
4359 4460 8.135529 ACCACCTTTTTCTCTTTTCTTTATTCG 58.864 33.333 0.00 0.00 0.00 3.34
4360 4461 9.464714 GACCACCTTTTTCTCTTTTCTTTATTC 57.535 33.333 0.00 0.00 0.00 1.75
4361 4462 8.421784 GGACCACCTTTTTCTCTTTTCTTTATT 58.578 33.333 0.00 0.00 0.00 1.40
4362 4463 7.255486 CGGACCACCTTTTTCTCTTTTCTTTAT 60.255 37.037 0.00 0.00 0.00 1.40
4363 4464 6.038936 CGGACCACCTTTTTCTCTTTTCTTTA 59.961 38.462 0.00 0.00 0.00 1.85
4364 4465 5.163550 CGGACCACCTTTTTCTCTTTTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
4365 4466 4.338400 CGGACCACCTTTTTCTCTTTTCTT 59.662 41.667 0.00 0.00 0.00 2.52
4366 4467 3.883489 CGGACCACCTTTTTCTCTTTTCT 59.117 43.478 0.00 0.00 0.00 2.52
4367 4468 3.004419 CCGGACCACCTTTTTCTCTTTTC 59.996 47.826 0.00 0.00 0.00 2.29
4368 4469 2.956333 CCGGACCACCTTTTTCTCTTTT 59.044 45.455 0.00 0.00 0.00 2.27
4369 4470 2.583143 CCGGACCACCTTTTTCTCTTT 58.417 47.619 0.00 0.00 0.00 2.52
4370 4471 1.202891 CCCGGACCACCTTTTTCTCTT 60.203 52.381 0.73 0.00 0.00 2.85
4371 4472 0.400594 CCCGGACCACCTTTTTCTCT 59.599 55.000 0.73 0.00 0.00 3.10
4372 4473 0.109913 ACCCGGACCACCTTTTTCTC 59.890 55.000 0.73 0.00 0.00 2.87
4373 4474 0.179001 CACCCGGACCACCTTTTTCT 60.179 55.000 0.73 0.00 0.00 2.52
4374 4475 1.176619 CCACCCGGACCACCTTTTTC 61.177 60.000 0.73 0.00 0.00 2.29
4375 4476 1.152631 CCACCCGGACCACCTTTTT 60.153 57.895 0.73 0.00 0.00 1.94
4376 4477 2.518933 CCACCCGGACCACCTTTT 59.481 61.111 0.73 0.00 0.00 2.27
4377 4478 3.576259 CCCACCCGGACCACCTTT 61.576 66.667 0.73 0.00 0.00 3.11
4389 4490 4.468689 GTAGGACGCAGCCCCACC 62.469 72.222 1.69 0.00 0.00 4.61
4390 4491 4.814294 CGTAGGACGCAGCCCCAC 62.814 72.222 1.69 0.00 33.65 4.61
4401 4502 3.755628 GCAGTCCGCCACGTAGGA 61.756 66.667 8.04 5.48 41.22 2.94
4411 4512 3.916392 GACACGTCTGGGCAGTCCG 62.916 68.421 0.00 0.00 38.76 4.79
4412 4513 2.048127 GACACGTCTGGGCAGTCC 60.048 66.667 0.00 0.00 0.00 3.85
4413 4514 2.048127 GGACACGTCTGGGCAGTC 60.048 66.667 0.00 0.00 0.00 3.51
4414 4515 3.991051 CGGACACGTCTGGGCAGT 61.991 66.667 0.00 0.00 34.81 4.40
4417 4518 4.980805 TTGCGGACACGTCTGGGC 62.981 66.667 8.06 5.11 43.45 5.36
4418 4519 2.738521 CTTGCGGACACGTCTGGG 60.739 66.667 8.06 0.00 43.45 4.45
4419 4520 3.414700 GCTTGCGGACACGTCTGG 61.415 66.667 8.06 0.00 43.45 3.86
4420 4521 3.414700 GGCTTGCGGACACGTCTG 61.415 66.667 1.44 1.44 43.45 3.51
4421 4522 4.681978 GGGCTTGCGGACACGTCT 62.682 66.667 0.00 0.00 43.45 4.18
4422 4523 4.681978 AGGGCTTGCGGACACGTC 62.682 66.667 0.00 0.00 43.45 4.34
4423 4524 4.681978 GAGGGCTTGCGGACACGT 62.682 66.667 0.00 0.00 43.45 4.49
4424 4525 2.572095 TATGAGGGCTTGCGGACACG 62.572 60.000 0.00 0.00 44.63 4.49
4425 4526 0.179045 ATATGAGGGCTTGCGGACAC 60.179 55.000 0.00 0.00 0.00 3.67
4426 4527 0.106708 GATATGAGGGCTTGCGGACA 59.893 55.000 0.00 0.00 0.00 4.02
4427 4528 0.603975 GGATATGAGGGCTTGCGGAC 60.604 60.000 0.00 0.00 0.00 4.79
4428 4529 0.764369 AGGATATGAGGGCTTGCGGA 60.764 55.000 0.00 0.00 0.00 5.54
4429 4530 0.321122 GAGGATATGAGGGCTTGCGG 60.321 60.000 0.00 0.00 0.00 5.69
4430 4531 0.321122 GGAGGATATGAGGGCTTGCG 60.321 60.000 0.00 0.00 0.00 4.85
4431 4532 0.037447 GGGAGGATATGAGGGCTTGC 59.963 60.000 0.00 0.00 0.00 4.01
4432 4533 0.695347 GGGGAGGATATGAGGGCTTG 59.305 60.000 0.00 0.00 0.00 4.01
4433 4534 0.271927 TGGGGAGGATATGAGGGCTT 59.728 55.000 0.00 0.00 0.00 4.35
4434 4535 0.500074 ATGGGGAGGATATGAGGGCT 59.500 55.000 0.00 0.00 0.00 5.19
4435 4536 2.270434 TATGGGGAGGATATGAGGGC 57.730 55.000 0.00 0.00 0.00 5.19
4436 4537 4.790246 TCAAATATGGGGAGGATATGAGGG 59.210 45.833 0.00 0.00 0.00 4.30
4437 4538 5.728253 TCTCAAATATGGGGAGGATATGAGG 59.272 44.000 0.00 0.00 0.00 3.86
4438 4539 6.881067 TCTCAAATATGGGGAGGATATGAG 57.119 41.667 0.00 0.00 0.00 2.90
4439 4540 6.159222 CCATCTCAAATATGGGGAGGATATGA 59.841 42.308 0.00 0.00 40.27 2.15
4440 4541 6.159222 TCCATCTCAAATATGGGGAGGATATG 59.841 42.308 2.45 0.00 43.52 1.78
4441 4542 6.282576 TCCATCTCAAATATGGGGAGGATAT 58.717 40.000 2.45 0.00 43.52 1.63
4442 4543 5.675077 TCCATCTCAAATATGGGGAGGATA 58.325 41.667 2.45 0.00 43.52 2.59
4443 4544 4.516283 TCCATCTCAAATATGGGGAGGAT 58.484 43.478 2.45 0.00 43.52 3.24
4444 4545 3.953352 TCCATCTCAAATATGGGGAGGA 58.047 45.455 2.45 0.00 43.52 3.71
4445 4546 4.942363 ATCCATCTCAAATATGGGGAGG 57.058 45.455 2.45 0.00 43.52 4.30
4446 4547 8.216423 CCTTATATCCATCTCAAATATGGGGAG 58.784 40.741 2.45 0.00 43.52 4.30
4447 4548 7.129349 CCCTTATATCCATCTCAAATATGGGGA 59.871 40.741 2.45 0.00 43.52 4.81
4448 4549 7.091811 ACCCTTATATCCATCTCAAATATGGGG 60.092 40.741 13.24 0.00 43.52 4.96
4449 4550 7.876371 ACCCTTATATCCATCTCAAATATGGG 58.124 38.462 9.06 9.06 43.52 4.00
4450 4551 9.401058 GAACCCTTATATCCATCTCAAATATGG 57.599 37.037 0.00 0.00 44.51 2.74
4451 4552 9.102757 CGAACCCTTATATCCATCTCAAATATG 57.897 37.037 0.00 0.00 0.00 1.78
4452 4553 7.770897 GCGAACCCTTATATCCATCTCAAATAT 59.229 37.037 0.00 0.00 0.00 1.28
4453 4554 7.103641 GCGAACCCTTATATCCATCTCAAATA 58.896 38.462 0.00 0.00 0.00 1.40
4454 4555 5.940470 GCGAACCCTTATATCCATCTCAAAT 59.060 40.000 0.00 0.00 0.00 2.32
4455 4556 5.305585 GCGAACCCTTATATCCATCTCAAA 58.694 41.667 0.00 0.00 0.00 2.69
4456 4557 4.560716 CGCGAACCCTTATATCCATCTCAA 60.561 45.833 0.00 0.00 0.00 3.02
4457 4558 3.056821 CGCGAACCCTTATATCCATCTCA 60.057 47.826 0.00 0.00 0.00 3.27
4458 4559 3.512680 CGCGAACCCTTATATCCATCTC 58.487 50.000 0.00 0.00 0.00 2.75
4459 4560 2.233922 CCGCGAACCCTTATATCCATCT 59.766 50.000 8.23 0.00 0.00 2.90
4460 4561 2.232941 TCCGCGAACCCTTATATCCATC 59.767 50.000 8.23 0.00 0.00 3.51
4461 4562 2.028385 GTCCGCGAACCCTTATATCCAT 60.028 50.000 8.23 0.00 0.00 3.41
4462 4563 1.342174 GTCCGCGAACCCTTATATCCA 59.658 52.381 8.23 0.00 0.00 3.41
4463 4564 1.342174 TGTCCGCGAACCCTTATATCC 59.658 52.381 8.23 0.00 0.00 2.59
4464 4565 2.673833 CTGTCCGCGAACCCTTATATC 58.326 52.381 8.23 0.00 0.00 1.63
4465 4566 1.270147 GCTGTCCGCGAACCCTTATAT 60.270 52.381 8.23 0.00 0.00 0.86
4466 4567 0.103572 GCTGTCCGCGAACCCTTATA 59.896 55.000 8.23 0.00 0.00 0.98
4467 4568 1.153429 GCTGTCCGCGAACCCTTAT 60.153 57.895 8.23 0.00 0.00 1.73
4468 4569 2.263540 GCTGTCCGCGAACCCTTA 59.736 61.111 8.23 0.00 0.00 2.69
4469 4570 4.699522 GGCTGTCCGCGAACCCTT 62.700 66.667 8.23 0.00 40.44 3.95
4485 4586 3.918328 ATCCCTATACGCCCGGGGG 62.918 68.421 34.39 34.39 39.35 5.40
4486 4587 2.284405 ATCCCTATACGCCCGGGG 60.284 66.667 25.28 15.33 38.55 5.73
4487 4588 0.976073 ATCATCCCTATACGCCCGGG 60.976 60.000 19.09 19.09 39.41 5.73
4488 4589 1.771565 TATCATCCCTATACGCCCGG 58.228 55.000 0.00 0.00 0.00 5.73
4489 4590 2.035961 CCATATCATCCCTATACGCCCG 59.964 54.545 0.00 0.00 0.00 6.13
4490 4591 2.368875 CCCATATCATCCCTATACGCCC 59.631 54.545 0.00 0.00 0.00 6.13
4491 4592 2.368875 CCCCATATCATCCCTATACGCC 59.631 54.545 0.00 0.00 0.00 5.68
4492 4593 2.368875 CCCCCATATCATCCCTATACGC 59.631 54.545 0.00 0.00 0.00 4.42
4510 4611 0.250166 CGTAATCCAATCGGACCCCC 60.250 60.000 0.00 0.00 46.79 5.40
4511 4612 0.466963 ACGTAATCCAATCGGACCCC 59.533 55.000 0.00 0.00 46.79 4.95
4512 4613 2.320745 AACGTAATCCAATCGGACCC 57.679 50.000 0.00 0.00 46.79 4.46
4513 4614 4.690184 AAAAACGTAATCCAATCGGACC 57.310 40.909 0.00 0.00 46.79 4.46
4531 4632 3.006967 CCGGACAGGAGAGAGAAGAAAAA 59.993 47.826 0.00 0.00 45.00 1.94
4532 4633 2.563179 CCGGACAGGAGAGAGAAGAAAA 59.437 50.000 0.00 0.00 45.00 2.29
4533 4634 2.171840 CCGGACAGGAGAGAGAAGAAA 58.828 52.381 0.00 0.00 45.00 2.52
4534 4635 1.075698 ACCGGACAGGAGAGAGAAGAA 59.924 52.381 9.46 0.00 45.00 2.52
4535 4636 0.699399 ACCGGACAGGAGAGAGAAGA 59.301 55.000 9.46 0.00 45.00 2.87
4536 4637 1.099689 GACCGGACAGGAGAGAGAAG 58.900 60.000 9.46 0.00 45.00 2.85
4537 4638 0.404426 TGACCGGACAGGAGAGAGAA 59.596 55.000 9.46 0.00 45.00 2.87
4538 4639 0.322636 GTGACCGGACAGGAGAGAGA 60.323 60.000 9.46 0.00 45.00 3.10
4539 4640 0.322997 AGTGACCGGACAGGAGAGAG 60.323 60.000 9.46 0.00 45.00 3.20
4540 4641 0.609406 CAGTGACCGGACAGGAGAGA 60.609 60.000 9.46 0.00 45.00 3.10
4541 4642 0.609406 TCAGTGACCGGACAGGAGAG 60.609 60.000 9.46 0.00 45.00 3.20
4542 4643 0.894184 GTCAGTGACCGGACAGGAGA 60.894 60.000 9.46 3.38 45.00 3.71
4543 4644 1.587054 GTCAGTGACCGGACAGGAG 59.413 63.158 9.46 0.58 45.00 3.69
4544 4645 1.906824 GGTCAGTGACCGGACAGGA 60.907 63.158 26.12 6.26 43.14 3.86
4545 4646 2.657237 GGTCAGTGACCGGACAGG 59.343 66.667 26.12 3.47 43.14 4.00
4567 4668 4.961511 TCATATGCCCGCGGACGC 62.962 66.667 30.73 23.57 38.22 5.19
4568 4669 2.734723 CTCATATGCCCGCGGACG 60.735 66.667 30.73 12.70 39.67 4.79
4569 4670 2.357517 CCTCATATGCCCGCGGAC 60.358 66.667 30.73 18.13 0.00 4.79
4570 4671 3.625897 CCCTCATATGCCCGCGGA 61.626 66.667 30.73 8.21 0.00 5.54
4571 4672 4.704833 CCCCTCATATGCCCGCGG 62.705 72.222 21.04 21.04 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.