Multiple sequence alignment - TraesCS1D01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G410700 chr1D 100.000 2834 0 0 1 2834 472401129 472403962 0.000000e+00 5234
1 TraesCS1D01G410700 chr1A 88.037 1722 94 39 843 2488 566390017 566391702 0.000000e+00 1936
2 TraesCS1D01G410700 chr1A 89.150 341 26 1 2505 2834 566391689 566392029 5.650000e-112 414
3 TraesCS1D01G410700 chr1B 88.169 1420 92 22 1104 2488 656664521 656665899 0.000000e+00 1622
4 TraesCS1D01G410700 chr1B 81.296 540 46 23 513 1015 656663880 656664401 1.230000e-103 387
5 TraesCS1D01G410700 chr1B 85.656 244 25 4 2505 2739 656665886 656666128 6.060000e-62 248
6 TraesCS1D01G410700 chr1B 89.759 166 17 0 350 515 622483736 622483571 2.210000e-51 213
7 TraesCS1D01G410700 chr3B 91.009 545 34 5 1073 1614 4650713 4650181 0.000000e+00 721
8 TraesCS1D01G410700 chr3B 89.818 550 38 6 1073 1622 3750193 3749662 0.000000e+00 689
9 TraesCS1D01G410700 chr3B 89.697 165 17 0 350 514 495839441 495839605 7.950000e-51 211
10 TraesCS1D01G410700 chr4B 90.751 173 16 0 349 521 629947555 629947383 6.110000e-57 231
11 TraesCS1D01G410700 chr3D 89.535 172 18 0 350 521 561736974 561736803 4.750000e-53 219
12 TraesCS1D01G410700 chr2A 90.361 166 16 0 350 515 663656569 663656404 4.750000e-53 219
13 TraesCS1D01G410700 chr4D 88.764 178 18 2 345 521 182067088 182066912 1.710000e-52 217
14 TraesCS1D01G410700 chrUn 89.697 165 17 0 350 514 182833428 182833264 7.950000e-51 211
15 TraesCS1D01G410700 chr5B 89.697 165 17 0 350 514 676020926 676020762 7.950000e-51 211
16 TraesCS1D01G410700 chr5A 89.286 168 18 0 350 517 369127503 369127670 7.950000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G410700 chr1D 472401129 472403962 2833 False 5234.000000 5234 100.000000 1 2834 1 chr1D.!!$F1 2833
1 TraesCS1D01G410700 chr1A 566390017 566392029 2012 False 1175.000000 1936 88.593500 843 2834 2 chr1A.!!$F1 1991
2 TraesCS1D01G410700 chr1B 656663880 656666128 2248 False 752.333333 1622 85.040333 513 2739 3 chr1B.!!$F1 2226
3 TraesCS1D01G410700 chr3B 4650181 4650713 532 True 721.000000 721 91.009000 1073 1614 1 chr3B.!!$R2 541
4 TraesCS1D01G410700 chr3B 3749662 3750193 531 True 689.000000 689 89.818000 1073 1622 1 chr3B.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.034059 CCGTGTCAGCTTTGACCTCT 59.966 55.0 3.85 0.0 37.99 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2030 0.809385 CATTCAGGCTGCAGAACTGG 59.191 55.0 27.84 15.07 33.19 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.845784 ACCAAGCCTGATGCCACA 59.154 55.556 0.00 0.00 42.71 4.17
18 19 1.153524 ACCAAGCCTGATGCCACAA 59.846 52.632 0.00 0.00 42.71 3.33
19 20 0.469705 ACCAAGCCTGATGCCACAAA 60.470 50.000 0.00 0.00 42.71 2.83
20 21 0.899720 CCAAGCCTGATGCCACAAAT 59.100 50.000 0.00 0.00 42.71 2.32
21 22 1.276989 CCAAGCCTGATGCCACAAATT 59.723 47.619 0.00 0.00 42.71 1.82
22 23 2.343101 CAAGCCTGATGCCACAAATTG 58.657 47.619 0.00 0.00 42.71 2.32
32 33 2.073117 CCACAAATTGGTAAACGGGC 57.927 50.000 0.00 0.00 41.10 6.13
33 34 1.341531 CCACAAATTGGTAAACGGGCA 59.658 47.619 0.00 0.00 41.10 5.36
34 35 2.399448 CACAAATTGGTAAACGGGCAC 58.601 47.619 0.00 0.00 0.00 5.01
36 37 1.267261 CAAATTGGTAAACGGGCACGA 59.733 47.619 19.19 0.00 44.60 4.35
37 38 1.606903 AATTGGTAAACGGGCACGAA 58.393 45.000 19.19 0.00 44.60 3.85
38 39 1.161843 ATTGGTAAACGGGCACGAAG 58.838 50.000 19.19 0.00 44.60 3.79
55 56 4.824289 ACGAAGTGGTAATGATAAACGGT 58.176 39.130 0.00 0.00 42.51 4.83
56 57 5.964758 ACGAAGTGGTAATGATAAACGGTA 58.035 37.500 0.00 0.00 42.51 4.02
57 58 6.397272 ACGAAGTGGTAATGATAAACGGTAA 58.603 36.000 0.00 0.00 42.51 2.85
58 59 6.873076 ACGAAGTGGTAATGATAAACGGTAAA 59.127 34.615 0.00 0.00 42.51 2.01
59 60 7.063780 ACGAAGTGGTAATGATAAACGGTAAAG 59.936 37.037 0.00 0.00 42.51 1.85
60 61 7.464977 CGAAGTGGTAATGATAAACGGTAAAGG 60.465 40.741 0.00 0.00 0.00 3.11
61 62 6.949715 AGTGGTAATGATAAACGGTAAAGGA 58.050 36.000 0.00 0.00 0.00 3.36
62 63 7.396418 AGTGGTAATGATAAACGGTAAAGGAA 58.604 34.615 0.00 0.00 0.00 3.36
63 64 7.884354 AGTGGTAATGATAAACGGTAAAGGAAA 59.116 33.333 0.00 0.00 0.00 3.13
64 65 8.513774 GTGGTAATGATAAACGGTAAAGGAAAA 58.486 33.333 0.00 0.00 0.00 2.29
65 66 9.075678 TGGTAATGATAAACGGTAAAGGAAAAA 57.924 29.630 0.00 0.00 0.00 1.94
84 85 3.375782 AAAGAAGAACCACATTGCAGC 57.624 42.857 0.00 0.00 0.00 5.25
85 86 1.251251 AGAAGAACCACATTGCAGCC 58.749 50.000 0.00 0.00 0.00 4.85
86 87 1.202976 AGAAGAACCACATTGCAGCCT 60.203 47.619 0.00 0.00 0.00 4.58
87 88 1.615392 GAAGAACCACATTGCAGCCTT 59.385 47.619 0.00 0.00 0.00 4.35
88 89 1.251251 AGAACCACATTGCAGCCTTC 58.749 50.000 0.00 0.00 0.00 3.46
89 90 0.961019 GAACCACATTGCAGCCTTCA 59.039 50.000 0.00 0.00 0.00 3.02
90 91 1.340889 GAACCACATTGCAGCCTTCAA 59.659 47.619 0.00 0.00 0.00 2.69
91 92 0.675633 ACCACATTGCAGCCTTCAAC 59.324 50.000 0.00 0.00 0.00 3.18
92 93 0.963962 CCACATTGCAGCCTTCAACT 59.036 50.000 0.00 0.00 0.00 3.16
93 94 1.342174 CCACATTGCAGCCTTCAACTT 59.658 47.619 0.00 0.00 0.00 2.66
94 95 2.400399 CACATTGCAGCCTTCAACTTG 58.600 47.619 0.00 0.00 0.00 3.16
95 96 1.269936 ACATTGCAGCCTTCAACTTGC 60.270 47.619 0.00 0.00 37.09 4.01
96 97 0.319405 ATTGCAGCCTTCAACTTGCC 59.681 50.000 0.00 0.00 35.75 4.52
97 98 1.042003 TTGCAGCCTTCAACTTGCCA 61.042 50.000 0.00 0.00 35.75 4.92
98 99 0.828762 TGCAGCCTTCAACTTGCCAT 60.829 50.000 0.00 0.00 35.75 4.40
99 100 0.319405 GCAGCCTTCAACTTGCCATT 59.681 50.000 0.00 0.00 0.00 3.16
100 101 1.670967 GCAGCCTTCAACTTGCCATTC 60.671 52.381 0.00 0.00 0.00 2.67
101 102 0.883833 AGCCTTCAACTTGCCATTCG 59.116 50.000 0.00 0.00 0.00 3.34
102 103 0.109132 GCCTTCAACTTGCCATTCGG 60.109 55.000 0.00 0.00 0.00 4.30
103 104 1.247567 CCTTCAACTTGCCATTCGGT 58.752 50.000 0.00 0.00 33.28 4.69
104 105 1.613437 CCTTCAACTTGCCATTCGGTT 59.387 47.619 0.00 0.00 33.28 4.44
105 106 2.035832 CCTTCAACTTGCCATTCGGTTT 59.964 45.455 0.00 0.00 33.28 3.27
106 107 3.254657 CCTTCAACTTGCCATTCGGTTTA 59.745 43.478 0.00 0.00 33.28 2.01
107 108 4.261825 CCTTCAACTTGCCATTCGGTTTAA 60.262 41.667 0.00 0.00 33.28 1.52
108 109 4.920640 TCAACTTGCCATTCGGTTTAAA 57.079 36.364 0.00 0.00 33.28 1.52
109 110 5.263968 TCAACTTGCCATTCGGTTTAAAA 57.736 34.783 0.00 0.00 33.28 1.52
110 111 5.848406 TCAACTTGCCATTCGGTTTAAAAT 58.152 33.333 0.00 0.00 33.28 1.82
111 112 6.284459 TCAACTTGCCATTCGGTTTAAAATT 58.716 32.000 0.00 0.00 33.28 1.82
112 113 6.422400 TCAACTTGCCATTCGGTTTAAAATTC 59.578 34.615 0.00 0.00 33.28 2.17
113 114 5.848406 ACTTGCCATTCGGTTTAAAATTCA 58.152 33.333 0.00 0.00 33.28 2.57
114 115 6.284459 ACTTGCCATTCGGTTTAAAATTCAA 58.716 32.000 0.00 0.00 33.28 2.69
115 116 6.201997 ACTTGCCATTCGGTTTAAAATTCAAC 59.798 34.615 0.00 0.00 33.28 3.18
116 117 4.991687 TGCCATTCGGTTTAAAATTCAACC 59.008 37.500 0.00 0.13 39.38 3.77
117 118 4.390603 GCCATTCGGTTTAAAATTCAACCC 59.609 41.667 4.18 0.00 39.58 4.11
118 119 5.789521 CCATTCGGTTTAAAATTCAACCCT 58.210 37.500 4.18 0.00 39.58 4.34
119 120 5.867174 CCATTCGGTTTAAAATTCAACCCTC 59.133 40.000 4.18 0.00 39.58 4.30
120 121 6.451393 CATTCGGTTTAAAATTCAACCCTCA 58.549 36.000 4.18 0.00 39.58 3.86
121 122 6.466885 TTCGGTTTAAAATTCAACCCTCAA 57.533 33.333 4.18 0.00 39.58 3.02
122 123 5.834169 TCGGTTTAAAATTCAACCCTCAAC 58.166 37.500 4.18 0.00 39.58 3.18
123 124 5.595133 TCGGTTTAAAATTCAACCCTCAACT 59.405 36.000 4.18 0.00 39.58 3.16
124 125 6.097129 TCGGTTTAAAATTCAACCCTCAACTT 59.903 34.615 4.18 0.00 39.58 2.66
125 126 6.419710 CGGTTTAAAATTCAACCCTCAACTTC 59.580 38.462 4.18 0.00 39.58 3.01
126 127 7.269316 GGTTTAAAATTCAACCCTCAACTTCA 58.731 34.615 0.00 0.00 37.11 3.02
127 128 7.766738 GGTTTAAAATTCAACCCTCAACTTCAA 59.233 33.333 0.00 0.00 37.11 2.69
128 129 9.157104 GTTTAAAATTCAACCCTCAACTTCAAA 57.843 29.630 0.00 0.00 0.00 2.69
129 130 9.726438 TTTAAAATTCAACCCTCAACTTCAAAA 57.274 25.926 0.00 0.00 0.00 2.44
130 131 7.609760 AAAATTCAACCCTCAACTTCAAAAC 57.390 32.000 0.00 0.00 0.00 2.43
131 132 4.729227 TTCAACCCTCAACTTCAAAACC 57.271 40.909 0.00 0.00 0.00 3.27
132 133 2.685897 TCAACCCTCAACTTCAAAACCG 59.314 45.455 0.00 0.00 0.00 4.44
133 134 2.685897 CAACCCTCAACTTCAAAACCGA 59.314 45.455 0.00 0.00 0.00 4.69
134 135 3.223674 ACCCTCAACTTCAAAACCGAT 57.776 42.857 0.00 0.00 0.00 4.18
135 136 3.562182 ACCCTCAACTTCAAAACCGATT 58.438 40.909 0.00 0.00 0.00 3.34
136 137 3.568430 ACCCTCAACTTCAAAACCGATTC 59.432 43.478 0.00 0.00 0.00 2.52
137 138 3.821033 CCCTCAACTTCAAAACCGATTCT 59.179 43.478 0.00 0.00 0.00 2.40
138 139 4.083271 CCCTCAACTTCAAAACCGATTCTC 60.083 45.833 0.00 0.00 0.00 2.87
139 140 4.083271 CCTCAACTTCAAAACCGATTCTCC 60.083 45.833 0.00 0.00 0.00 3.71
140 141 3.818773 TCAACTTCAAAACCGATTCTCCC 59.181 43.478 0.00 0.00 0.00 4.30
141 142 3.790089 ACTTCAAAACCGATTCTCCCT 57.210 42.857 0.00 0.00 0.00 4.20
142 143 3.676093 ACTTCAAAACCGATTCTCCCTC 58.324 45.455 0.00 0.00 0.00 4.30
143 144 3.072476 ACTTCAAAACCGATTCTCCCTCA 59.928 43.478 0.00 0.00 0.00 3.86
144 145 3.780804 TCAAAACCGATTCTCCCTCAA 57.219 42.857 0.00 0.00 0.00 3.02
145 146 4.093472 TCAAAACCGATTCTCCCTCAAA 57.907 40.909 0.00 0.00 0.00 2.69
146 147 3.818773 TCAAAACCGATTCTCCCTCAAAC 59.181 43.478 0.00 0.00 0.00 2.93
147 148 3.502123 AAACCGATTCTCCCTCAAACA 57.498 42.857 0.00 0.00 0.00 2.83
148 149 3.502123 AACCGATTCTCCCTCAAACAA 57.498 42.857 0.00 0.00 0.00 2.83
149 150 3.502123 ACCGATTCTCCCTCAAACAAA 57.498 42.857 0.00 0.00 0.00 2.83
150 151 3.146847 ACCGATTCTCCCTCAAACAAAC 58.853 45.455 0.00 0.00 0.00 2.93
151 152 3.146066 CCGATTCTCCCTCAAACAAACA 58.854 45.455 0.00 0.00 0.00 2.83
152 153 3.568007 CCGATTCTCCCTCAAACAAACAA 59.432 43.478 0.00 0.00 0.00 2.83
153 154 4.037446 CCGATTCTCCCTCAAACAAACAAA 59.963 41.667 0.00 0.00 0.00 2.83
154 155 4.976116 CGATTCTCCCTCAAACAAACAAAC 59.024 41.667 0.00 0.00 0.00 2.93
155 156 5.449862 CGATTCTCCCTCAAACAAACAAACA 60.450 40.000 0.00 0.00 0.00 2.83
156 157 5.730296 TTCTCCCTCAAACAAACAAACAA 57.270 34.783 0.00 0.00 0.00 2.83
157 158 5.730296 TCTCCCTCAAACAAACAAACAAA 57.270 34.783 0.00 0.00 0.00 2.83
158 159 6.102897 TCTCCCTCAAACAAACAAACAAAA 57.897 33.333 0.00 0.00 0.00 2.44
159 160 6.525629 TCTCCCTCAAACAAACAAACAAAAA 58.474 32.000 0.00 0.00 0.00 1.94
182 183 8.871686 AAAATAAACTTGCAACTCTGTTTAGG 57.128 30.769 19.95 1.82 37.98 2.69
183 184 7.817418 AATAAACTTGCAACTCTGTTTAGGA 57.183 32.000 19.95 6.65 37.98 2.94
184 185 7.817418 ATAAACTTGCAACTCTGTTTAGGAA 57.183 32.000 19.95 6.38 37.98 3.36
185 186 6.715347 AAACTTGCAACTCTGTTTAGGAAT 57.285 33.333 11.55 0.00 31.85 3.01
186 187 5.948992 ACTTGCAACTCTGTTTAGGAATC 57.051 39.130 0.00 0.00 0.00 2.52
187 188 5.625150 ACTTGCAACTCTGTTTAGGAATCT 58.375 37.500 0.00 0.00 0.00 2.40
188 189 6.769512 ACTTGCAACTCTGTTTAGGAATCTA 58.230 36.000 0.00 0.00 0.00 1.98
189 190 6.651225 ACTTGCAACTCTGTTTAGGAATCTAC 59.349 38.462 0.00 0.00 0.00 2.59
190 191 5.488341 TGCAACTCTGTTTAGGAATCTACC 58.512 41.667 0.00 0.00 0.00 3.18
191 192 4.876679 GCAACTCTGTTTAGGAATCTACCC 59.123 45.833 0.00 0.00 0.00 3.69
192 193 5.429130 CAACTCTGTTTAGGAATCTACCCC 58.571 45.833 0.00 0.00 0.00 4.95
193 194 4.038633 ACTCTGTTTAGGAATCTACCCCC 58.961 47.826 0.00 0.00 0.00 5.40
194 195 3.036091 TCTGTTTAGGAATCTACCCCCG 58.964 50.000 0.00 0.00 0.00 5.73
195 196 1.487558 TGTTTAGGAATCTACCCCCGC 59.512 52.381 0.00 0.00 0.00 6.13
196 197 1.767088 GTTTAGGAATCTACCCCCGCT 59.233 52.381 0.00 0.00 0.00 5.52
197 198 1.713297 TTAGGAATCTACCCCCGCTC 58.287 55.000 0.00 0.00 0.00 5.03
198 199 0.538977 TAGGAATCTACCCCCGCTCG 60.539 60.000 0.00 0.00 0.00 5.03
199 200 2.735237 GAATCTACCCCCGCTCGG 59.265 66.667 0.48 0.48 0.00 4.63
200 201 2.042230 AATCTACCCCCGCTCGGT 60.042 61.111 7.59 0.00 37.40 4.69
201 202 1.683418 GAATCTACCCCCGCTCGGTT 61.683 60.000 7.59 0.00 34.66 4.44
202 203 1.269703 AATCTACCCCCGCTCGGTTT 61.270 55.000 7.59 0.00 34.66 3.27
203 204 1.269703 ATCTACCCCCGCTCGGTTTT 61.270 55.000 7.59 0.00 34.66 2.43
204 205 1.002990 CTACCCCCGCTCGGTTTTT 60.003 57.895 7.59 0.00 34.66 1.94
205 206 0.249955 CTACCCCCGCTCGGTTTTTA 59.750 55.000 7.59 0.00 34.66 1.52
206 207 0.036483 TACCCCCGCTCGGTTTTTAC 60.036 55.000 7.59 0.00 34.66 2.01
207 208 1.002990 CCCCCGCTCGGTTTTTACT 60.003 57.895 7.59 0.00 0.00 2.24
208 209 1.303091 CCCCCGCTCGGTTTTTACTG 61.303 60.000 7.59 0.00 0.00 2.74
209 210 1.303091 CCCCGCTCGGTTTTTACTGG 61.303 60.000 7.59 0.00 0.00 4.00
210 211 0.604511 CCCGCTCGGTTTTTACTGGT 60.605 55.000 7.59 0.00 0.00 4.00
211 212 1.232119 CCGCTCGGTTTTTACTGGTT 58.768 50.000 0.00 0.00 0.00 3.67
212 213 1.605232 CCGCTCGGTTTTTACTGGTTT 59.395 47.619 0.00 0.00 0.00 3.27
213 214 2.603652 CCGCTCGGTTTTTACTGGTTTG 60.604 50.000 0.00 0.00 0.00 2.93
214 215 2.288458 CGCTCGGTTTTTACTGGTTTGA 59.712 45.455 0.00 0.00 0.00 2.69
215 216 3.624900 GCTCGGTTTTTACTGGTTTGAC 58.375 45.455 0.00 0.00 0.00 3.18
216 217 3.549423 GCTCGGTTTTTACTGGTTTGACC 60.549 47.826 0.00 0.00 39.22 4.02
217 218 2.989641 CGGTTTTTACTGGTTTGACCG 58.010 47.619 0.00 0.00 42.58 4.79
218 219 2.355444 CGGTTTTTACTGGTTTGACCGT 59.645 45.455 4.03 0.00 42.58 4.83
219 220 3.697982 GGTTTTTACTGGTTTGACCGTG 58.302 45.455 5.34 0.00 42.58 4.94
220 221 3.110358 GTTTTTACTGGTTTGACCGTGC 58.890 45.455 5.34 0.00 42.58 5.34
221 222 2.335316 TTTACTGGTTTGACCGTGCT 57.665 45.000 5.34 0.00 42.58 4.40
222 223 1.588674 TTACTGGTTTGACCGTGCTG 58.411 50.000 5.34 0.00 42.58 4.41
223 224 0.753867 TACTGGTTTGACCGTGCTGA 59.246 50.000 5.34 0.00 42.58 4.26
224 225 0.814010 ACTGGTTTGACCGTGCTGAC 60.814 55.000 0.00 0.00 42.58 3.51
225 226 1.507141 CTGGTTTGACCGTGCTGACC 61.507 60.000 0.00 0.00 42.58 4.02
226 227 1.227853 GGTTTGACCGTGCTGACCT 60.228 57.895 0.00 0.00 0.00 3.85
227 228 1.507141 GGTTTGACCGTGCTGACCTG 61.507 60.000 0.00 0.00 0.00 4.00
228 229 0.814010 GTTTGACCGTGCTGACCTGT 60.814 55.000 0.00 0.00 0.00 4.00
229 230 0.107410 TTTGACCGTGCTGACCTGTT 60.107 50.000 0.00 0.00 0.00 3.16
230 231 0.107410 TTGACCGTGCTGACCTGTTT 60.107 50.000 0.00 0.00 0.00 2.83
231 232 0.107410 TGACCGTGCTGACCTGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
232 233 0.307760 GACCGTGCTGACCTGTTTTG 59.692 55.000 0.00 0.00 0.00 2.44
233 234 0.107410 ACCGTGCTGACCTGTTTTGA 60.107 50.000 0.00 0.00 0.00 2.69
234 235 0.307760 CCGTGCTGACCTGTTTTGAC 59.692 55.000 0.00 0.00 0.00 3.18
235 236 1.299541 CGTGCTGACCTGTTTTGACT 58.700 50.000 0.00 0.00 0.00 3.41
236 237 1.003545 CGTGCTGACCTGTTTTGACTG 60.004 52.381 0.00 0.00 0.00 3.51
237 238 1.024271 TGCTGACCTGTTTTGACTGC 58.976 50.000 0.00 0.00 0.00 4.40
238 239 0.040958 GCTGACCTGTTTTGACTGCG 60.041 55.000 0.00 0.00 0.00 5.18
239 240 1.299541 CTGACCTGTTTTGACTGCGT 58.700 50.000 0.00 0.00 0.00 5.24
240 241 1.670811 CTGACCTGTTTTGACTGCGTT 59.329 47.619 0.00 0.00 0.00 4.84
241 242 2.869801 CTGACCTGTTTTGACTGCGTTA 59.130 45.455 0.00 0.00 0.00 3.18
242 243 2.610374 TGACCTGTTTTGACTGCGTTAC 59.390 45.455 0.00 0.00 0.00 2.50
243 244 2.870411 GACCTGTTTTGACTGCGTTACT 59.130 45.455 0.00 0.00 0.00 2.24
244 245 2.612212 ACCTGTTTTGACTGCGTTACTG 59.388 45.455 0.00 0.00 0.00 2.74
245 246 2.602217 CCTGTTTTGACTGCGTTACTGC 60.602 50.000 0.00 0.00 0.00 4.40
246 247 2.285083 TGTTTTGACTGCGTTACTGCT 58.715 42.857 1.68 0.00 35.36 4.24
247 248 2.031560 TGTTTTGACTGCGTTACTGCTG 59.968 45.455 5.08 5.08 39.43 4.41
248 249 2.232756 TTTGACTGCGTTACTGCTGA 57.767 45.000 11.24 0.00 37.50 4.26
249 250 2.455674 TTGACTGCGTTACTGCTGAT 57.544 45.000 11.24 0.00 37.50 2.90
250 251 2.455674 TGACTGCGTTACTGCTGATT 57.544 45.000 11.24 0.00 37.50 2.57
251 252 2.068519 TGACTGCGTTACTGCTGATTG 58.931 47.619 11.24 0.00 37.50 2.67
252 253 1.394917 GACTGCGTTACTGCTGATTGG 59.605 52.381 11.24 0.00 37.50 3.16
253 254 0.729116 CTGCGTTACTGCTGATTGGG 59.271 55.000 0.00 0.00 36.04 4.12
254 255 1.305219 TGCGTTACTGCTGATTGGGC 61.305 55.000 0.00 0.00 35.36 5.36
255 256 1.305219 GCGTTACTGCTGATTGGGCA 61.305 55.000 0.00 0.00 38.10 5.36
256 257 1.164411 CGTTACTGCTGATTGGGCAA 58.836 50.000 0.00 0.00 39.30 4.52
257 258 1.135689 CGTTACTGCTGATTGGGCAAC 60.136 52.381 0.00 0.00 39.30 4.17
258 259 1.135689 GTTACTGCTGATTGGGCAACG 60.136 52.381 0.00 0.00 39.30 4.10
259 260 1.305219 TACTGCTGATTGGGCAACGC 61.305 55.000 0.00 0.00 39.30 4.84
270 271 3.649986 GCAACGCCGTGTCAGCTT 61.650 61.111 0.00 0.00 0.00 3.74
271 272 3.022287 CAACGCCGTGTCAGCTTT 58.978 55.556 0.00 0.00 0.00 3.51
272 273 1.369209 CAACGCCGTGTCAGCTTTG 60.369 57.895 0.00 0.00 33.87 2.77
273 274 1.522806 AACGCCGTGTCAGCTTTGA 60.523 52.632 0.00 0.00 0.00 2.69
274 275 1.772063 AACGCCGTGTCAGCTTTGAC 61.772 55.000 0.00 0.00 39.15 3.18
275 276 2.946762 GCCGTGTCAGCTTTGACC 59.053 61.111 3.85 0.00 37.99 4.02
276 277 1.598130 GCCGTGTCAGCTTTGACCT 60.598 57.895 3.85 0.00 37.99 3.85
277 278 1.569479 GCCGTGTCAGCTTTGACCTC 61.569 60.000 3.85 0.00 37.99 3.85
278 279 0.034059 CCGTGTCAGCTTTGACCTCT 59.966 55.000 3.85 0.00 37.99 3.69
279 280 1.423395 CGTGTCAGCTTTGACCTCTC 58.577 55.000 3.85 0.00 37.99 3.20
280 281 1.269778 CGTGTCAGCTTTGACCTCTCA 60.270 52.381 3.85 0.00 37.99 3.27
281 282 2.611473 CGTGTCAGCTTTGACCTCTCAT 60.611 50.000 3.85 0.00 37.99 2.90
282 283 2.740981 GTGTCAGCTTTGACCTCTCATG 59.259 50.000 3.85 0.00 37.99 3.07
283 284 2.289882 TGTCAGCTTTGACCTCTCATGG 60.290 50.000 3.85 0.00 37.99 3.66
284 285 2.027745 GTCAGCTTTGACCTCTCATGGA 60.028 50.000 0.00 0.00 32.97 3.41
285 286 2.842496 TCAGCTTTGACCTCTCATGGAT 59.158 45.455 0.00 0.00 0.00 3.41
286 287 2.943690 CAGCTTTGACCTCTCATGGATG 59.056 50.000 0.00 0.00 0.00 3.51
287 288 2.575279 AGCTTTGACCTCTCATGGATGT 59.425 45.455 0.00 0.00 0.00 3.06
288 289 3.009916 AGCTTTGACCTCTCATGGATGTT 59.990 43.478 0.00 0.00 0.00 2.71
289 290 3.128242 GCTTTGACCTCTCATGGATGTTG 59.872 47.826 0.00 0.00 0.00 3.33
290 291 4.330250 CTTTGACCTCTCATGGATGTTGT 58.670 43.478 0.00 0.00 0.00 3.32
291 292 3.339253 TGACCTCTCATGGATGTTGTG 57.661 47.619 0.00 0.00 0.00 3.33
292 293 2.026915 TGACCTCTCATGGATGTTGTGG 60.027 50.000 0.00 0.00 0.00 4.17
293 294 1.283029 ACCTCTCATGGATGTTGTGGG 59.717 52.381 0.00 0.00 0.00 4.61
294 295 1.283029 CCTCTCATGGATGTTGTGGGT 59.717 52.381 0.00 0.00 0.00 4.51
295 296 2.636830 CTCTCATGGATGTTGTGGGTC 58.363 52.381 0.00 0.00 0.00 4.46
296 297 1.984424 TCTCATGGATGTTGTGGGTCA 59.016 47.619 0.00 0.00 0.00 4.02
297 298 2.086869 CTCATGGATGTTGTGGGTCAC 58.913 52.381 0.00 0.00 34.56 3.67
298 299 1.423161 TCATGGATGTTGTGGGTCACA 59.577 47.619 0.00 0.00 43.02 3.58
299 300 1.541147 CATGGATGTTGTGGGTCACAC 59.459 52.381 0.00 0.00 44.47 3.82
307 308 2.159181 GTGGGTCACACGGATTTCG 58.841 57.895 0.00 0.00 40.85 3.46
308 309 0.320073 GTGGGTCACACGGATTTCGA 60.320 55.000 0.00 0.00 40.85 3.71
309 310 0.611200 TGGGTCACACGGATTTCGAT 59.389 50.000 0.00 0.00 42.43 3.59
310 311 1.002659 TGGGTCACACGGATTTCGATT 59.997 47.619 0.00 0.00 42.43 3.34
311 312 2.081462 GGGTCACACGGATTTCGATTT 58.919 47.619 0.00 0.00 42.43 2.17
312 313 2.486592 GGGTCACACGGATTTCGATTTT 59.513 45.455 0.00 0.00 42.43 1.82
313 314 3.057806 GGGTCACACGGATTTCGATTTTT 60.058 43.478 0.00 0.00 42.43 1.94
329 330 0.386113 TTTTTACGCTTGGTGGGTGC 59.614 50.000 0.00 0.00 42.07 5.01
330 331 0.752009 TTTTACGCTTGGTGGGTGCA 60.752 50.000 0.00 0.00 42.07 4.57
331 332 1.448922 TTTACGCTTGGTGGGTGCAC 61.449 55.000 8.80 8.80 42.07 4.57
334 335 2.281208 GCTTGGTGGGTGCACGTA 60.281 61.111 11.45 0.00 0.00 3.57
335 336 1.894756 GCTTGGTGGGTGCACGTAA 60.895 57.895 11.45 0.00 0.00 3.18
336 337 1.241315 GCTTGGTGGGTGCACGTAAT 61.241 55.000 11.45 0.00 0.00 1.89
337 338 0.802494 CTTGGTGGGTGCACGTAATC 59.198 55.000 11.45 0.00 0.00 1.75
338 339 0.398696 TTGGTGGGTGCACGTAATCT 59.601 50.000 11.45 0.00 0.00 2.40
339 340 0.321210 TGGTGGGTGCACGTAATCTG 60.321 55.000 11.45 0.00 0.00 2.90
340 341 0.321298 GGTGGGTGCACGTAATCTGT 60.321 55.000 11.45 0.00 0.00 3.41
341 342 1.519408 GTGGGTGCACGTAATCTGTT 58.481 50.000 11.45 0.00 0.00 3.16
342 343 1.877443 GTGGGTGCACGTAATCTGTTT 59.123 47.619 11.45 0.00 0.00 2.83
343 344 2.095919 GTGGGTGCACGTAATCTGTTTC 60.096 50.000 11.45 0.00 0.00 2.78
344 345 2.224426 TGGGTGCACGTAATCTGTTTCT 60.224 45.455 11.45 0.00 0.00 2.52
345 346 2.812011 GGGTGCACGTAATCTGTTTCTT 59.188 45.455 11.45 0.00 0.00 2.52
346 347 3.252458 GGGTGCACGTAATCTGTTTCTTT 59.748 43.478 11.45 0.00 0.00 2.52
347 348 4.219033 GGTGCACGTAATCTGTTTCTTTG 58.781 43.478 11.45 0.00 0.00 2.77
348 349 4.261031 GGTGCACGTAATCTGTTTCTTTGT 60.261 41.667 11.45 0.00 0.00 2.83
349 350 5.270853 GTGCACGTAATCTGTTTCTTTGTT 58.729 37.500 0.00 0.00 0.00 2.83
350 351 6.423862 GTGCACGTAATCTGTTTCTTTGTTA 58.576 36.000 0.00 0.00 0.00 2.41
351 352 6.356190 GTGCACGTAATCTGTTTCTTTGTTAC 59.644 38.462 0.00 0.00 0.00 2.50
352 353 6.259167 TGCACGTAATCTGTTTCTTTGTTACT 59.741 34.615 0.00 0.00 0.00 2.24
353 354 6.790825 GCACGTAATCTGTTTCTTTGTTACTC 59.209 38.462 0.00 0.00 0.00 2.59
354 355 7.288672 CACGTAATCTGTTTCTTTGTTACTCC 58.711 38.462 0.00 0.00 0.00 3.85
355 356 6.987992 ACGTAATCTGTTTCTTTGTTACTCCA 59.012 34.615 0.00 0.00 0.00 3.86
356 357 7.660208 ACGTAATCTGTTTCTTTGTTACTCCAT 59.340 33.333 0.00 0.00 0.00 3.41
357 358 8.504005 CGTAATCTGTTTCTTTGTTACTCCATT 58.496 33.333 0.00 0.00 0.00 3.16
360 361 9.574516 AATCTGTTTCTTTGTTACTCCATTAGT 57.425 29.630 0.00 0.00 42.62 2.24
361 362 8.974060 TCTGTTTCTTTGTTACTCCATTAGTT 57.026 30.769 0.00 0.00 39.80 2.24
362 363 9.052759 TCTGTTTCTTTGTTACTCCATTAGTTC 57.947 33.333 0.00 0.00 39.80 3.01
363 364 8.740123 TGTTTCTTTGTTACTCCATTAGTTCA 57.260 30.769 0.00 0.00 39.80 3.18
364 365 9.349713 TGTTTCTTTGTTACTCCATTAGTTCAT 57.650 29.630 0.00 0.00 39.80 2.57
365 366 9.827411 GTTTCTTTGTTACTCCATTAGTTCATC 57.173 33.333 0.00 0.00 39.80 2.92
366 367 9.567776 TTTCTTTGTTACTCCATTAGTTCATCA 57.432 29.630 0.00 0.00 39.80 3.07
367 368 9.567776 TTCTTTGTTACTCCATTAGTTCATCAA 57.432 29.630 0.00 0.00 39.80 2.57
368 369 9.739276 TCTTTGTTACTCCATTAGTTCATCAAT 57.261 29.630 0.00 0.00 39.80 2.57
376 377 9.466497 ACTCCATTAGTTCATCAATATTTGTGT 57.534 29.630 0.00 0.00 33.35 3.72
414 415 9.613428 TCAAATGGACTATTACTTAAGGATGTG 57.387 33.333 7.53 0.00 0.00 3.21
415 416 9.396022 CAAATGGACTATTACTTAAGGATGTGT 57.604 33.333 7.53 0.12 0.00 3.72
453 454 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
454 455 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
455 456 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
456 457 8.621532 AGTGTAGATTCACTTATTTTGCTTCA 57.378 30.769 0.00 0.00 44.92 3.02
457 458 9.236006 AGTGTAGATTCACTTATTTTGCTTCAT 57.764 29.630 0.00 0.00 44.92 2.57
466 467 9.665719 TCACTTATTTTGCTTCATATGTAGTCA 57.334 29.630 10.61 6.75 0.00 3.41
467 468 9.708222 CACTTATTTTGCTTCATATGTAGTCAC 57.292 33.333 10.61 0.00 0.00 3.67
468 469 9.672673 ACTTATTTTGCTTCATATGTAGTCACT 57.327 29.630 10.61 0.00 0.00 3.41
471 472 7.744087 TTTTGCTTCATATGTAGTCACTTGT 57.256 32.000 10.61 0.00 0.00 3.16
472 473 7.744087 TTTGCTTCATATGTAGTCACTTGTT 57.256 32.000 10.61 0.00 0.00 2.83
473 474 6.726258 TGCTTCATATGTAGTCACTTGTTG 57.274 37.500 10.61 0.00 0.00 3.33
474 475 6.463360 TGCTTCATATGTAGTCACTTGTTGA 58.537 36.000 10.61 0.00 0.00 3.18
475 476 6.934083 TGCTTCATATGTAGTCACTTGTTGAA 59.066 34.615 10.61 0.00 35.39 2.69
476 477 7.443879 TGCTTCATATGTAGTCACTTGTTGAAA 59.556 33.333 10.61 0.00 35.39 2.69
477 478 8.454106 GCTTCATATGTAGTCACTTGTTGAAAT 58.546 33.333 10.61 0.00 35.39 2.17
484 485 9.778741 ATGTAGTCACTTGTTGAAATTTCTAGA 57.221 29.630 18.64 7.52 35.39 2.43
485 486 9.607988 TGTAGTCACTTGTTGAAATTTCTAGAA 57.392 29.630 18.64 14.37 35.39 2.10
488 489 9.178758 AGTCACTTGTTGAAATTTCTAGAAAGT 57.821 29.630 21.75 17.28 35.39 2.66
489 490 9.439537 GTCACTTGTTGAAATTTCTAGAAAGTC 57.560 33.333 21.75 19.85 35.39 3.01
490 491 9.173021 TCACTTGTTGAAATTTCTAGAAAGTCA 57.827 29.630 21.75 21.79 33.32 3.41
491 492 9.787532 CACTTGTTGAAATTTCTAGAAAGTCAA 57.212 29.630 27.41 27.41 36.63 3.18
505 506 9.595823 TCTAGAAAGTCAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
506 507 9.595823 CTAGAAAGTCAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
507 508 8.494016 AGAAAGTCAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
508 509 7.553044 AGAAAGTCAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
509 510 5.681639 AGTCAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
510 511 5.427481 AGTCAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
511 512 5.758784 GTCAAATATTTAGGAACGGAGGGAG 59.241 44.000 0.00 0.00 0.00 4.30
512 513 5.427481 TCAAATATTTAGGAACGGAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
513 514 6.612456 TCAAATATTTAGGAACGGAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
514 515 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
524 525 2.675032 CGGAGGGAGTACGTTTTAACCC 60.675 54.545 0.00 0.17 37.79 4.11
529 530 2.989166 GGAGTACGTTTTAACCCTGTCG 59.011 50.000 0.00 0.00 0.00 4.35
538 539 0.878416 TAACCCTGTCGCATTTGTGC 59.122 50.000 0.00 0.00 0.00 4.57
543 544 0.592637 CTGTCGCATTTGTGCCTGAA 59.407 50.000 0.00 0.00 0.00 3.02
553 554 0.464036 TGTGCCTGAAACTCTCGTGT 59.536 50.000 0.00 0.00 0.00 4.49
557 560 2.062519 GCCTGAAACTCTCGTGTTCTC 58.937 52.381 0.00 0.00 0.00 2.87
559 562 2.297597 CCTGAAACTCTCGTGTTCTCCT 59.702 50.000 0.00 0.00 0.00 3.69
562 565 0.241481 AACTCTCGTGTTCTCCTCGC 59.759 55.000 0.00 0.00 0.00 5.03
563 566 0.606944 ACTCTCGTGTTCTCCTCGCT 60.607 55.000 0.00 0.00 0.00 4.93
585 588 2.360350 GCTGCTGGCAAGTGGCTA 60.360 61.111 6.41 0.00 44.01 3.93
589 592 2.265739 CTGGCAAGTGGCTAGCGA 59.734 61.111 9.00 0.68 44.53 4.93
590 593 2.047274 TGGCAAGTGGCTAGCGAC 60.047 61.111 21.02 21.02 44.01 5.19
591 594 2.266055 GGCAAGTGGCTAGCGACT 59.734 61.111 24.89 24.89 44.01 4.18
592 595 1.376037 GGCAAGTGGCTAGCGACTT 60.376 57.895 32.04 32.04 43.87 3.01
593 596 1.362406 GGCAAGTGGCTAGCGACTTC 61.362 60.000 34.02 27.18 41.77 3.01
602 605 1.005557 GCTAGCGACTTCGAAATGCTG 60.006 52.381 21.81 14.91 43.02 4.41
608 611 0.035056 ACTTCGAAATGCTGGGGAGG 60.035 55.000 0.00 0.00 0.00 4.30
623 626 2.422519 GGGGAGGACTACAGTCACGATA 60.423 54.545 11.31 0.00 46.47 2.92
634 637 1.402259 AGTCACGATAAGAGGCGAGTG 59.598 52.381 0.00 0.00 0.00 3.51
672 675 2.905075 TGCAGATGCGCACTTAATAGT 58.095 42.857 14.90 0.00 45.83 2.12
673 676 4.053469 TGCAGATGCGCACTTAATAGTA 57.947 40.909 14.90 0.00 45.83 1.82
697 700 6.368779 TTTACCACTGCTCCTGTACTTATT 57.631 37.500 0.00 0.00 0.00 1.40
698 701 4.207891 ACCACTGCTCCTGTACTTATTG 57.792 45.455 0.00 0.00 0.00 1.90
709 712 4.338682 CCTGTACTTATTGGCGTACTCTCT 59.661 45.833 0.00 0.00 37.47 3.10
710 713 5.496133 TGTACTTATTGGCGTACTCTCTC 57.504 43.478 0.00 0.00 37.47 3.20
712 715 2.358267 ACTTATTGGCGTACTCTCTCCG 59.642 50.000 0.00 0.00 0.00 4.63
714 717 0.683504 ATTGGCGTACTCTCTCCGGT 60.684 55.000 0.00 0.00 0.00 5.28
715 718 0.035152 TTGGCGTACTCTCTCCGGTA 60.035 55.000 0.00 0.00 0.00 4.02
716 719 0.745845 TGGCGTACTCTCTCCGGTAC 60.746 60.000 0.00 0.00 36.08 3.34
717 720 0.463474 GGCGTACTCTCTCCGGTACT 60.463 60.000 0.00 0.00 36.94 2.73
718 721 0.936600 GCGTACTCTCTCCGGTACTC 59.063 60.000 0.00 0.00 36.94 2.59
733 736 3.449737 CGGTACTCCTATCTTCAACCCAA 59.550 47.826 0.00 0.00 0.00 4.12
753 771 1.537202 ACTTTTGGTGCGCAAGATCTC 59.463 47.619 14.00 0.00 43.02 2.75
755 773 1.298157 TTTGGTGCGCAAGATCTCGG 61.298 55.000 14.00 0.00 43.02 4.63
763 781 1.134530 GCAAGATCTCGGTGTCGACG 61.135 60.000 11.62 0.00 40.88 5.12
766 784 1.296722 GATCTCGGTGTCGACGACG 60.297 63.158 22.06 21.15 40.88 5.12
808 826 3.492656 GGCAGTGCCGTAAGATTCAGATA 60.493 47.826 20.55 0.00 39.62 1.98
811 834 4.151335 CAGTGCCGTAAGATTCAGATATGC 59.849 45.833 0.00 0.00 43.02 3.14
814 837 3.861131 GCCGTAAGATTCAGATATGCCGT 60.861 47.826 0.00 0.00 43.02 5.68
849 872 0.461693 GCGCCATCTTCAGAAGCTCT 60.462 55.000 5.15 0.00 0.00 4.09
881 909 2.776312 TGTAATGTTTGGCGCGAAAA 57.224 40.000 19.42 10.87 0.00 2.29
937 966 0.319813 GCGCTTTCCAAAACAGCCAT 60.320 50.000 0.00 0.00 0.00 4.40
1179 1290 2.760385 GTCCTCCAGTCCCTCCGG 60.760 72.222 0.00 0.00 0.00 5.14
1276 1401 0.614979 GGACTACAGCCTCTGGGACA 60.615 60.000 0.00 0.00 35.51 4.02
1500 1637 2.616458 GGTGGGGAACAGGATGCCT 61.616 63.158 0.00 0.00 42.53 4.75
1651 1794 2.202797 CGTGGTCGCTGGAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
1707 1850 0.759959 TGAGGAAACAGTACCGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
1710 1853 1.134037 AGGAAACAGTACCGGCAACAA 60.134 47.619 0.00 0.00 0.00 2.83
1721 1864 4.347453 GCAACAACAGCCAGCCGG 62.347 66.667 0.00 0.00 0.00 6.13
1837 1995 3.990959 GGAACCAGAGGAGATGAAGTT 57.009 47.619 0.00 0.00 0.00 2.66
1838 1996 4.293662 GGAACCAGAGGAGATGAAGTTT 57.706 45.455 0.00 0.00 0.00 2.66
1864 2030 0.960364 TGAACTCCCTTGCCGAATGC 60.960 55.000 0.00 0.00 41.77 3.56
1923 2095 5.998981 TGTTCTAGCTAGATAGAGTAGGTGC 59.001 44.000 23.81 4.98 33.44 5.01
1931 2103 5.078411 AGATAGAGTAGGTGCAGTTTGTG 57.922 43.478 0.00 0.00 0.00 3.33
2022 2194 5.241403 TGAGTTTCCTTGGCTATCTCAAA 57.759 39.130 0.00 0.00 0.00 2.69
2089 2261 4.387256 GTCGACCTTGAACTGAATCTGAAG 59.613 45.833 3.51 0.00 0.00 3.02
2155 2327 1.820519 CTACTACCCGGTGTGCTTACA 59.179 52.381 0.00 0.00 0.00 2.41
2197 2369 6.264970 TCAGTGAGATGTCATGGATCTAGAAG 59.735 42.308 0.00 1.86 34.36 2.85
2203 2375 6.491062 AGATGTCATGGATCTAGAAGACAGAG 59.509 42.308 14.10 6.24 39.10 3.35
2206 2378 5.774690 GTCATGGATCTAGAAGACAGAGGAT 59.225 44.000 0.00 0.00 0.00 3.24
2210 2382 7.096402 TGGATCTAGAAGACAGAGGATGATA 57.904 40.000 0.00 0.00 0.00 2.15
2362 2549 3.505386 TGGCATGTGACCAAGGTTTAAT 58.495 40.909 0.00 0.00 33.12 1.40
2363 2550 4.667573 TGGCATGTGACCAAGGTTTAATA 58.332 39.130 0.00 0.00 33.12 0.98
2364 2551 5.080337 TGGCATGTGACCAAGGTTTAATAA 58.920 37.500 0.00 0.00 33.12 1.40
2418 2626 6.513180 ACCGATTGTATTACTCTGTGTATGG 58.487 40.000 0.00 0.00 0.00 2.74
2424 2632 6.338146 TGTATTACTCTGTGTATGGCAAGAC 58.662 40.000 0.00 0.00 0.00 3.01
2425 2633 2.770164 ACTCTGTGTATGGCAAGACC 57.230 50.000 0.00 0.00 39.84 3.85
2426 2634 1.279271 ACTCTGTGTATGGCAAGACCC 59.721 52.381 0.00 0.00 37.83 4.46
2427 2635 1.278985 CTCTGTGTATGGCAAGACCCA 59.721 52.381 0.00 0.00 39.65 4.51
2428 2636 1.702401 TCTGTGTATGGCAAGACCCAA 59.298 47.619 0.00 0.00 38.61 4.12
2429 2637 2.086869 CTGTGTATGGCAAGACCCAAG 58.913 52.381 0.00 0.00 38.61 3.61
2430 2638 1.702401 TGTGTATGGCAAGACCCAAGA 59.298 47.619 0.00 0.00 38.61 3.02
2444 2652 6.487299 AGACCCAAGAATGAACTCCTATAC 57.513 41.667 0.00 0.00 0.00 1.47
2448 2656 7.363031 ACCCAAGAATGAACTCCTATACTCTA 58.637 38.462 0.00 0.00 0.00 2.43
2472 2683 9.813826 CTAAAAGGATCCCATTCAAATATACCT 57.186 33.333 8.55 0.00 0.00 3.08
2473 2684 8.712228 AAAAGGATCCCATTCAAATATACCTC 57.288 34.615 8.55 0.00 0.00 3.85
2474 2685 7.654287 AAGGATCCCATTCAAATATACCTCT 57.346 36.000 8.55 0.00 0.00 3.69
2475 2686 7.264294 AGGATCCCATTCAAATATACCTCTC 57.736 40.000 8.55 0.00 0.00 3.20
2476 2687 7.028131 AGGATCCCATTCAAATATACCTCTCT 58.972 38.462 8.55 0.00 0.00 3.10
2477 2688 7.519004 AGGATCCCATTCAAATATACCTCTCTT 59.481 37.037 8.55 0.00 0.00 2.85
2478 2689 7.826744 GGATCCCATTCAAATATACCTCTCTTC 59.173 40.741 0.00 0.00 0.00 2.87
2479 2690 6.759272 TCCCATTCAAATATACCTCTCTTCG 58.241 40.000 0.00 0.00 0.00 3.79
2480 2691 5.934625 CCCATTCAAATATACCTCTCTTCGG 59.065 44.000 0.00 0.00 0.00 4.30
2481 2692 6.464465 CCCATTCAAATATACCTCTCTTCGGT 60.464 42.308 0.00 0.00 38.55 4.69
2482 2693 6.992715 CCATTCAAATATACCTCTCTTCGGTT 59.007 38.462 0.00 0.00 35.98 4.44
2483 2694 7.499232 CCATTCAAATATACCTCTCTTCGGTTT 59.501 37.037 0.00 0.00 35.98 3.27
2484 2695 9.542462 CATTCAAATATACCTCTCTTCGGTTTA 57.458 33.333 0.00 0.00 35.98 2.01
2518 2729 8.817092 TTTGAGGGAAATCTTCGGTTTATAAT 57.183 30.769 0.00 0.00 0.00 1.28
2534 2745 8.664798 CGGTTTATAATTGACTGACAGATCAAA 58.335 33.333 10.08 2.69 38.29 2.69
2550 2761 6.183360 ACAGATCAAATTGCAGGTTATTCTCG 60.183 38.462 0.00 0.00 0.00 4.04
2552 2763 3.100817 CAAATTGCAGGTTATTCTCGCG 58.899 45.455 0.00 0.00 0.00 5.87
2557 2768 1.082117 CAGGTTATTCTCGCGGCGTT 61.082 55.000 22.90 8.50 0.00 4.84
2606 2817 4.175516 AGCACGGCAACATCAAATTTATG 58.824 39.130 0.00 0.00 0.00 1.90
2635 2846 6.430000 ACAAGAGAACCAAAATATTGTAGCGT 59.570 34.615 0.00 0.00 34.60 5.07
2643 2854 5.286082 CCAAAATATTGTAGCGTTCAAGCAC 59.714 40.000 0.00 0.00 35.70 4.40
2647 2858 4.568152 ATTGTAGCGTTCAAGCACTTTT 57.432 36.364 0.00 0.00 40.15 2.27
2648 2859 4.364415 TTGTAGCGTTCAAGCACTTTTT 57.636 36.364 0.00 0.00 40.15 1.94
2656 2867 4.730521 CGTTCAAGCACTTTTTCAAGAGTC 59.269 41.667 0.00 0.00 33.72 3.36
2667 2878 7.707893 CACTTTTTCAAGAGTCACCAAATCAAT 59.292 33.333 0.00 0.00 33.72 2.57
2669 2880 6.957920 TTTCAAGAGTCACCAAATCAATCA 57.042 33.333 0.00 0.00 0.00 2.57
2679 2890 7.543172 AGTCACCAAATCAATCAAATTCATTCG 59.457 33.333 0.00 0.00 0.00 3.34
2687 2898 7.099266 TCAATCAAATTCATTCGGCAAGTAT 57.901 32.000 0.00 0.00 0.00 2.12
2724 2942 2.880890 ACTGCAGACTGAAAACATCACC 59.119 45.455 23.35 0.00 33.47 4.02
2758 2987 8.899771 GCACAACATAAATAACCCTATACAGTT 58.100 33.333 0.00 0.00 0.00 3.16
2761 2990 8.898761 CAACATAAATAACCCTATACAGTTGCA 58.101 33.333 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.469705 TTTGTGGCATCAGGCTTGGT 60.470 50.000 0.00 0.00 44.01 3.67
1 2 0.899720 ATTTGTGGCATCAGGCTTGG 59.100 50.000 0.00 0.00 44.01 3.61
2 3 2.343101 CAATTTGTGGCATCAGGCTTG 58.657 47.619 0.00 0.00 44.01 4.01
3 4 1.276989 CCAATTTGTGGCATCAGGCTT 59.723 47.619 0.00 0.00 41.72 4.35
4 5 0.899720 CCAATTTGTGGCATCAGGCT 59.100 50.000 0.00 0.00 41.72 4.58
5 6 3.446507 CCAATTTGTGGCATCAGGC 57.553 52.632 0.00 0.00 41.72 4.85
14 15 2.399448 GTGCCCGTTTACCAATTTGTG 58.601 47.619 0.00 0.00 0.00 3.33
15 16 1.001158 CGTGCCCGTTTACCAATTTGT 60.001 47.619 0.00 0.00 0.00 2.83
16 17 1.267261 TCGTGCCCGTTTACCAATTTG 59.733 47.619 0.00 0.00 35.01 2.32
17 18 1.606903 TCGTGCCCGTTTACCAATTT 58.393 45.000 0.00 0.00 35.01 1.82
18 19 1.538075 CTTCGTGCCCGTTTACCAATT 59.462 47.619 0.00 0.00 35.01 2.32
19 20 1.161843 CTTCGTGCCCGTTTACCAAT 58.838 50.000 0.00 0.00 35.01 3.16
20 21 0.179051 ACTTCGTGCCCGTTTACCAA 60.179 50.000 0.00 0.00 35.01 3.67
21 22 0.881159 CACTTCGTGCCCGTTTACCA 60.881 55.000 0.00 0.00 35.01 3.25
22 23 1.571215 CCACTTCGTGCCCGTTTACC 61.571 60.000 0.00 0.00 35.01 2.85
23 24 0.881600 ACCACTTCGTGCCCGTTTAC 60.882 55.000 0.00 0.00 35.01 2.01
24 25 0.678395 TACCACTTCGTGCCCGTTTA 59.322 50.000 0.00 0.00 35.01 2.01
25 26 0.179051 TTACCACTTCGTGCCCGTTT 60.179 50.000 0.00 0.00 35.01 3.60
26 27 0.035739 ATTACCACTTCGTGCCCGTT 59.964 50.000 0.00 0.00 35.01 4.44
27 28 0.672401 CATTACCACTTCGTGCCCGT 60.672 55.000 0.00 0.00 35.01 5.28
28 29 0.390603 TCATTACCACTTCGTGCCCG 60.391 55.000 0.00 0.00 31.34 6.13
29 30 2.038387 ATCATTACCACTTCGTGCCC 57.962 50.000 0.00 0.00 31.34 5.36
30 31 4.493545 CGTTTATCATTACCACTTCGTGCC 60.494 45.833 0.00 0.00 31.34 5.01
31 32 4.493545 CCGTTTATCATTACCACTTCGTGC 60.494 45.833 0.00 0.00 31.34 5.34
32 33 4.628333 ACCGTTTATCATTACCACTTCGTG 59.372 41.667 0.00 0.00 0.00 4.35
33 34 4.824289 ACCGTTTATCATTACCACTTCGT 58.176 39.130 0.00 0.00 0.00 3.85
34 35 6.890663 TTACCGTTTATCATTACCACTTCG 57.109 37.500 0.00 0.00 0.00 3.79
35 36 7.550196 TCCTTTACCGTTTATCATTACCACTTC 59.450 37.037 0.00 0.00 0.00 3.01
36 37 7.396418 TCCTTTACCGTTTATCATTACCACTT 58.604 34.615 0.00 0.00 0.00 3.16
37 38 6.949715 TCCTTTACCGTTTATCATTACCACT 58.050 36.000 0.00 0.00 0.00 4.00
38 39 7.614124 TTCCTTTACCGTTTATCATTACCAC 57.386 36.000 0.00 0.00 0.00 4.16
39 40 8.632906 TTTTCCTTTACCGTTTATCATTACCA 57.367 30.769 0.00 0.00 0.00 3.25
62 63 4.122046 GCTGCAATGTGGTTCTTCTTTTT 58.878 39.130 0.00 0.00 0.00 1.94
63 64 3.493176 GGCTGCAATGTGGTTCTTCTTTT 60.493 43.478 0.50 0.00 0.00 2.27
64 65 2.036346 GGCTGCAATGTGGTTCTTCTTT 59.964 45.455 0.50 0.00 0.00 2.52
65 66 1.615392 GGCTGCAATGTGGTTCTTCTT 59.385 47.619 0.50 0.00 0.00 2.52
66 67 1.202976 AGGCTGCAATGTGGTTCTTCT 60.203 47.619 0.50 0.00 0.00 2.85
67 68 1.251251 AGGCTGCAATGTGGTTCTTC 58.749 50.000 0.50 0.00 0.00 2.87
68 69 1.615392 GAAGGCTGCAATGTGGTTCTT 59.385 47.619 0.50 0.00 0.00 2.52
69 70 1.251251 GAAGGCTGCAATGTGGTTCT 58.749 50.000 0.50 0.00 0.00 3.01
70 71 0.961019 TGAAGGCTGCAATGTGGTTC 59.039 50.000 0.50 0.00 0.00 3.62
71 72 1.069049 GTTGAAGGCTGCAATGTGGTT 59.931 47.619 11.93 0.00 0.00 3.67
72 73 0.675633 GTTGAAGGCTGCAATGTGGT 59.324 50.000 11.93 0.00 0.00 4.16
73 74 0.963962 AGTTGAAGGCTGCAATGTGG 59.036 50.000 11.93 0.00 0.00 4.17
74 75 2.400399 CAAGTTGAAGGCTGCAATGTG 58.600 47.619 11.93 8.82 0.00 3.21
75 76 1.269936 GCAAGTTGAAGGCTGCAATGT 60.270 47.619 11.93 0.00 0.00 2.71
76 77 1.425412 GCAAGTTGAAGGCTGCAATG 58.575 50.000 11.93 7.83 0.00 2.82
77 78 0.319405 GGCAAGTTGAAGGCTGCAAT 59.681 50.000 11.93 0.00 0.00 3.56
78 79 1.042003 TGGCAAGTTGAAGGCTGCAA 61.042 50.000 3.04 3.04 0.00 4.08
79 80 0.828762 ATGGCAAGTTGAAGGCTGCA 60.829 50.000 7.16 0.00 0.00 4.41
80 81 0.319405 AATGGCAAGTTGAAGGCTGC 59.681 50.000 7.16 0.00 0.00 5.25
81 82 1.401931 CGAATGGCAAGTTGAAGGCTG 60.402 52.381 7.16 0.00 0.00 4.85
82 83 0.883833 CGAATGGCAAGTTGAAGGCT 59.116 50.000 7.16 0.00 0.00 4.58
83 84 0.109132 CCGAATGGCAAGTTGAAGGC 60.109 55.000 7.16 0.00 0.00 4.35
84 85 1.247567 ACCGAATGGCAAGTTGAAGG 58.752 50.000 7.16 2.46 39.70 3.46
85 86 3.369546 AAACCGAATGGCAAGTTGAAG 57.630 42.857 7.16 0.00 39.70 3.02
86 87 4.920640 TTAAACCGAATGGCAAGTTGAA 57.079 36.364 7.16 0.00 39.70 2.69
87 88 4.920640 TTTAAACCGAATGGCAAGTTGA 57.079 36.364 7.16 0.00 39.70 3.18
88 89 6.201806 TGAATTTTAAACCGAATGGCAAGTTG 59.798 34.615 0.00 0.00 39.70 3.16
89 90 6.284459 TGAATTTTAAACCGAATGGCAAGTT 58.716 32.000 0.00 0.00 39.70 2.66
90 91 5.848406 TGAATTTTAAACCGAATGGCAAGT 58.152 33.333 0.00 0.00 39.70 3.16
91 92 6.347321 GGTTGAATTTTAAACCGAATGGCAAG 60.347 38.462 0.00 0.00 39.70 4.01
92 93 5.467063 GGTTGAATTTTAAACCGAATGGCAA 59.533 36.000 0.00 0.00 39.70 4.52
93 94 4.991687 GGTTGAATTTTAAACCGAATGGCA 59.008 37.500 0.00 0.00 39.70 4.92
94 95 4.390603 GGGTTGAATTTTAAACCGAATGGC 59.609 41.667 10.69 0.00 45.70 4.40
95 96 5.789521 AGGGTTGAATTTTAAACCGAATGG 58.210 37.500 2.62 0.00 45.70 3.16
96 97 6.451393 TGAGGGTTGAATTTTAAACCGAATG 58.549 36.000 2.62 0.00 45.70 2.67
97 98 6.658188 TGAGGGTTGAATTTTAAACCGAAT 57.342 33.333 2.62 2.76 45.70 3.34
98 99 6.097129 AGTTGAGGGTTGAATTTTAAACCGAA 59.903 34.615 2.62 0.00 45.70 4.30
99 100 5.595133 AGTTGAGGGTTGAATTTTAAACCGA 59.405 36.000 2.62 0.00 45.70 4.69
100 101 5.838529 AGTTGAGGGTTGAATTTTAAACCG 58.161 37.500 2.62 0.00 45.70 4.44
101 102 7.269316 TGAAGTTGAGGGTTGAATTTTAAACC 58.731 34.615 0.00 0.00 44.31 3.27
102 103 8.710835 TTGAAGTTGAGGGTTGAATTTTAAAC 57.289 30.769 0.00 0.00 0.00 2.01
103 104 9.726438 TTTTGAAGTTGAGGGTTGAATTTTAAA 57.274 25.926 0.00 0.00 0.00 1.52
104 105 9.157104 GTTTTGAAGTTGAGGGTTGAATTTTAA 57.843 29.630 0.00 0.00 0.00 1.52
105 106 7.766738 GGTTTTGAAGTTGAGGGTTGAATTTTA 59.233 33.333 0.00 0.00 0.00 1.52
106 107 6.597672 GGTTTTGAAGTTGAGGGTTGAATTTT 59.402 34.615 0.00 0.00 0.00 1.82
107 108 6.112734 GGTTTTGAAGTTGAGGGTTGAATTT 58.887 36.000 0.00 0.00 0.00 1.82
108 109 5.670485 GGTTTTGAAGTTGAGGGTTGAATT 58.330 37.500 0.00 0.00 0.00 2.17
109 110 4.202111 CGGTTTTGAAGTTGAGGGTTGAAT 60.202 41.667 0.00 0.00 0.00 2.57
110 111 3.129638 CGGTTTTGAAGTTGAGGGTTGAA 59.870 43.478 0.00 0.00 0.00 2.69
111 112 2.685897 CGGTTTTGAAGTTGAGGGTTGA 59.314 45.455 0.00 0.00 0.00 3.18
112 113 2.685897 TCGGTTTTGAAGTTGAGGGTTG 59.314 45.455 0.00 0.00 0.00 3.77
113 114 3.007473 TCGGTTTTGAAGTTGAGGGTT 57.993 42.857 0.00 0.00 0.00 4.11
114 115 2.721425 TCGGTTTTGAAGTTGAGGGT 57.279 45.000 0.00 0.00 0.00 4.34
115 116 3.821033 AGAATCGGTTTTGAAGTTGAGGG 59.179 43.478 0.00 0.00 0.00 4.30
116 117 4.083271 GGAGAATCGGTTTTGAAGTTGAGG 60.083 45.833 0.00 0.00 34.37 3.86
117 118 4.083271 GGGAGAATCGGTTTTGAAGTTGAG 60.083 45.833 0.00 0.00 34.37 3.02
118 119 3.818773 GGGAGAATCGGTTTTGAAGTTGA 59.181 43.478 0.00 0.00 34.37 3.18
119 120 3.821033 AGGGAGAATCGGTTTTGAAGTTG 59.179 43.478 0.00 0.00 34.37 3.16
120 121 4.072839 GAGGGAGAATCGGTTTTGAAGTT 58.927 43.478 0.00 0.00 34.37 2.66
121 122 3.072476 TGAGGGAGAATCGGTTTTGAAGT 59.928 43.478 0.00 0.00 34.37 3.01
122 123 3.674997 TGAGGGAGAATCGGTTTTGAAG 58.325 45.455 0.00 0.00 34.37 3.02
123 124 3.780804 TGAGGGAGAATCGGTTTTGAA 57.219 42.857 0.00 0.00 34.37 2.69
124 125 3.780804 TTGAGGGAGAATCGGTTTTGA 57.219 42.857 0.00 0.00 34.37 2.69
125 126 3.568007 TGTTTGAGGGAGAATCGGTTTTG 59.432 43.478 0.00 0.00 34.37 2.44
126 127 3.827722 TGTTTGAGGGAGAATCGGTTTT 58.172 40.909 0.00 0.00 34.37 2.43
127 128 3.502123 TGTTTGAGGGAGAATCGGTTT 57.498 42.857 0.00 0.00 34.37 3.27
128 129 3.502123 TTGTTTGAGGGAGAATCGGTT 57.498 42.857 0.00 0.00 34.37 4.44
129 130 3.146847 GTTTGTTTGAGGGAGAATCGGT 58.853 45.455 0.00 0.00 34.37 4.69
130 131 3.146066 TGTTTGTTTGAGGGAGAATCGG 58.854 45.455 0.00 0.00 34.37 4.18
131 132 4.829064 TTGTTTGTTTGAGGGAGAATCG 57.171 40.909 0.00 0.00 34.37 3.34
132 133 5.901552 TGTTTGTTTGTTTGAGGGAGAATC 58.098 37.500 0.00 0.00 0.00 2.52
133 134 5.930837 TGTTTGTTTGTTTGAGGGAGAAT 57.069 34.783 0.00 0.00 0.00 2.40
134 135 5.730296 TTGTTTGTTTGTTTGAGGGAGAA 57.270 34.783 0.00 0.00 0.00 2.87
135 136 5.730296 TTTGTTTGTTTGTTTGAGGGAGA 57.270 34.783 0.00 0.00 0.00 3.71
136 137 6.793492 TTTTTGTTTGTTTGTTTGAGGGAG 57.207 33.333 0.00 0.00 0.00 4.30
156 157 9.313118 CCTAAACAGAGTTGCAAGTTTATTTTT 57.687 29.630 17.19 10.99 36.29 1.94
157 158 8.691797 TCCTAAACAGAGTTGCAAGTTTATTTT 58.308 29.630 17.19 12.50 36.29 1.82
158 159 8.232913 TCCTAAACAGAGTTGCAAGTTTATTT 57.767 30.769 17.19 12.33 36.29 1.40
159 160 7.817418 TCCTAAACAGAGTTGCAAGTTTATT 57.183 32.000 17.19 9.82 36.29 1.40
160 161 7.817418 TTCCTAAACAGAGTTGCAAGTTTAT 57.183 32.000 17.19 0.00 36.29 1.40
161 162 7.719633 AGATTCCTAAACAGAGTTGCAAGTTTA 59.280 33.333 16.39 16.39 35.90 2.01
162 163 6.547510 AGATTCCTAAACAGAGTTGCAAGTTT 59.452 34.615 15.98 15.98 37.82 2.66
163 164 6.064717 AGATTCCTAAACAGAGTTGCAAGTT 58.935 36.000 8.48 1.88 0.00 2.66
164 165 5.625150 AGATTCCTAAACAGAGTTGCAAGT 58.375 37.500 6.46 6.46 0.00 3.16
165 166 6.092807 GGTAGATTCCTAAACAGAGTTGCAAG 59.907 42.308 0.00 0.00 0.00 4.01
166 167 5.938125 GGTAGATTCCTAAACAGAGTTGCAA 59.062 40.000 0.00 0.00 0.00 4.08
167 168 5.488341 GGTAGATTCCTAAACAGAGTTGCA 58.512 41.667 0.00 0.00 0.00 4.08
168 169 4.876679 GGGTAGATTCCTAAACAGAGTTGC 59.123 45.833 0.00 0.00 0.00 4.17
169 170 5.429130 GGGGTAGATTCCTAAACAGAGTTG 58.571 45.833 0.00 0.00 0.00 3.16
170 171 4.473922 GGGGGTAGATTCCTAAACAGAGTT 59.526 45.833 0.00 0.00 0.00 3.01
171 172 4.038633 GGGGGTAGATTCCTAAACAGAGT 58.961 47.826 0.00 0.00 0.00 3.24
172 173 3.069729 CGGGGGTAGATTCCTAAACAGAG 59.930 52.174 0.00 0.00 0.00 3.35
173 174 3.036091 CGGGGGTAGATTCCTAAACAGA 58.964 50.000 0.00 0.00 0.00 3.41
174 175 2.484947 GCGGGGGTAGATTCCTAAACAG 60.485 54.545 0.00 0.00 0.00 3.16
175 176 1.487558 GCGGGGGTAGATTCCTAAACA 59.512 52.381 0.00 0.00 0.00 2.83
176 177 1.767088 AGCGGGGGTAGATTCCTAAAC 59.233 52.381 0.00 0.00 0.00 2.01
177 178 2.044758 GAGCGGGGGTAGATTCCTAAA 58.955 52.381 0.00 0.00 0.00 1.85
178 179 1.713297 GAGCGGGGGTAGATTCCTAA 58.287 55.000 0.00 0.00 0.00 2.69
179 180 0.538977 CGAGCGGGGGTAGATTCCTA 60.539 60.000 0.00 0.00 0.00 2.94
180 181 1.833049 CGAGCGGGGGTAGATTCCT 60.833 63.158 0.00 0.00 0.00 3.36
181 182 2.735237 CGAGCGGGGGTAGATTCC 59.265 66.667 0.00 0.00 0.00 3.01
182 183 1.683418 AACCGAGCGGGGGTAGATTC 61.683 60.000 14.07 0.00 41.60 2.52
183 184 1.269703 AAACCGAGCGGGGGTAGATT 61.270 55.000 14.07 0.00 41.60 2.40
184 185 1.269703 AAAACCGAGCGGGGGTAGAT 61.270 55.000 14.07 0.00 41.60 1.98
185 186 1.482748 AAAAACCGAGCGGGGGTAGA 61.483 55.000 14.07 0.00 41.60 2.59
186 187 0.249955 TAAAAACCGAGCGGGGGTAG 59.750 55.000 14.07 0.00 41.60 3.18
187 188 0.036483 GTAAAAACCGAGCGGGGGTA 60.036 55.000 14.07 0.00 41.60 3.69
188 189 1.302752 GTAAAAACCGAGCGGGGGT 60.303 57.895 14.07 0.00 41.60 4.95
189 190 1.002990 AGTAAAAACCGAGCGGGGG 60.003 57.895 14.07 0.00 41.60 5.40
190 191 1.303091 CCAGTAAAAACCGAGCGGGG 61.303 60.000 14.07 0.00 41.60 5.73
191 192 0.604511 ACCAGTAAAAACCGAGCGGG 60.605 55.000 14.07 0.00 43.62 6.13
192 193 1.232119 AACCAGTAAAAACCGAGCGG 58.768 50.000 7.48 7.48 42.03 5.52
193 194 2.288458 TCAAACCAGTAAAAACCGAGCG 59.712 45.455 0.00 0.00 0.00 5.03
194 195 3.549423 GGTCAAACCAGTAAAAACCGAGC 60.549 47.826 0.00 0.00 38.42 5.03
195 196 4.219143 GGTCAAACCAGTAAAAACCGAG 57.781 45.455 0.00 0.00 38.42 4.63
197 198 2.989641 CGGTCAAACCAGTAAAAACCG 58.010 47.619 0.00 0.00 38.47 4.44
198 199 3.697982 CACGGTCAAACCAGTAAAAACC 58.302 45.455 0.00 0.00 38.47 3.27
199 200 3.110358 GCACGGTCAAACCAGTAAAAAC 58.890 45.455 0.00 0.00 38.47 2.43
200 201 3.018149 AGCACGGTCAAACCAGTAAAAA 58.982 40.909 0.00 0.00 38.47 1.94
201 202 2.356382 CAGCACGGTCAAACCAGTAAAA 59.644 45.455 0.00 0.00 38.47 1.52
202 203 1.944024 CAGCACGGTCAAACCAGTAAA 59.056 47.619 0.00 0.00 38.47 2.01
203 204 1.139256 TCAGCACGGTCAAACCAGTAA 59.861 47.619 0.00 0.00 38.47 2.24
204 205 0.753867 TCAGCACGGTCAAACCAGTA 59.246 50.000 0.00 0.00 38.47 2.74
205 206 0.814010 GTCAGCACGGTCAAACCAGT 60.814 55.000 0.00 0.00 38.47 4.00
206 207 1.507141 GGTCAGCACGGTCAAACCAG 61.507 60.000 0.00 0.00 38.47 4.00
207 208 1.525077 GGTCAGCACGGTCAAACCA 60.525 57.895 0.00 0.00 38.47 3.67
208 209 1.227853 AGGTCAGCACGGTCAAACC 60.228 57.895 0.00 0.00 34.05 3.27
209 210 0.814010 ACAGGTCAGCACGGTCAAAC 60.814 55.000 0.00 0.00 0.00 2.93
210 211 0.107410 AACAGGTCAGCACGGTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
211 212 0.107410 AAACAGGTCAGCACGGTCAA 60.107 50.000 0.00 0.00 0.00 3.18
212 213 0.107410 AAAACAGGTCAGCACGGTCA 60.107 50.000 0.00 0.00 0.00 4.02
213 214 0.307760 CAAAACAGGTCAGCACGGTC 59.692 55.000 0.00 0.00 0.00 4.79
214 215 0.107410 TCAAAACAGGTCAGCACGGT 60.107 50.000 0.00 0.00 0.00 4.83
215 216 0.307760 GTCAAAACAGGTCAGCACGG 59.692 55.000 0.00 0.00 0.00 4.94
216 217 1.003545 CAGTCAAAACAGGTCAGCACG 60.004 52.381 0.00 0.00 0.00 5.34
217 218 1.268743 GCAGTCAAAACAGGTCAGCAC 60.269 52.381 0.00 0.00 0.00 4.40
218 219 1.024271 GCAGTCAAAACAGGTCAGCA 58.976 50.000 0.00 0.00 0.00 4.41
219 220 0.040958 CGCAGTCAAAACAGGTCAGC 60.041 55.000 0.00 0.00 0.00 4.26
220 221 1.299541 ACGCAGTCAAAACAGGTCAG 58.700 50.000 0.00 0.00 29.74 3.51
221 222 1.745232 AACGCAGTCAAAACAGGTCA 58.255 45.000 0.00 0.00 45.00 4.02
222 223 2.870411 AGTAACGCAGTCAAAACAGGTC 59.130 45.455 0.00 0.00 45.00 3.85
223 224 2.612212 CAGTAACGCAGTCAAAACAGGT 59.388 45.455 0.00 0.00 45.00 4.00
224 225 2.602217 GCAGTAACGCAGTCAAAACAGG 60.602 50.000 0.00 0.00 45.00 4.00
225 226 2.287915 AGCAGTAACGCAGTCAAAACAG 59.712 45.455 0.00 0.00 45.00 3.16
226 227 2.031560 CAGCAGTAACGCAGTCAAAACA 59.968 45.455 0.00 0.00 45.00 2.83
227 228 2.286833 TCAGCAGTAACGCAGTCAAAAC 59.713 45.455 0.00 0.00 45.00 2.43
228 229 2.556257 TCAGCAGTAACGCAGTCAAAA 58.444 42.857 0.00 0.00 45.00 2.44
229 230 2.232756 TCAGCAGTAACGCAGTCAAA 57.767 45.000 0.00 0.00 45.00 2.69
230 231 2.455674 ATCAGCAGTAACGCAGTCAA 57.544 45.000 0.00 0.00 45.00 3.18
231 232 2.068519 CAATCAGCAGTAACGCAGTCA 58.931 47.619 0.00 0.00 45.00 3.41
232 233 1.394917 CCAATCAGCAGTAACGCAGTC 59.605 52.381 0.00 0.00 45.00 3.51
234 235 0.729116 CCCAATCAGCAGTAACGCAG 59.271 55.000 0.00 0.00 0.00 5.18
235 236 1.305219 GCCCAATCAGCAGTAACGCA 61.305 55.000 0.00 0.00 0.00 5.24
236 237 1.305219 TGCCCAATCAGCAGTAACGC 61.305 55.000 0.00 0.00 34.69 4.84
237 238 1.135689 GTTGCCCAATCAGCAGTAACG 60.136 52.381 0.00 0.00 42.17 3.18
238 239 1.135689 CGTTGCCCAATCAGCAGTAAC 60.136 52.381 0.00 0.00 42.17 2.50
239 240 1.164411 CGTTGCCCAATCAGCAGTAA 58.836 50.000 0.00 0.00 42.17 2.24
240 241 1.305219 GCGTTGCCCAATCAGCAGTA 61.305 55.000 0.00 0.00 42.17 2.74
241 242 2.629656 GCGTTGCCCAATCAGCAGT 61.630 57.895 0.00 0.00 42.17 4.40
242 243 2.180017 GCGTTGCCCAATCAGCAG 59.820 61.111 0.00 0.00 42.17 4.24
243 244 3.372730 GGCGTTGCCCAATCAGCA 61.373 61.111 0.00 0.00 44.06 4.41
253 254 3.181169 AAAGCTGACACGGCGTTGC 62.181 57.895 11.19 12.79 41.21 4.17
254 255 1.369209 CAAAGCTGACACGGCGTTG 60.369 57.895 11.19 14.22 45.15 4.10
255 256 1.522806 TCAAAGCTGACACGGCGTT 60.523 52.632 11.19 1.33 41.21 4.84
256 257 2.108157 TCAAAGCTGACACGGCGT 59.892 55.556 6.77 6.77 41.21 5.68
264 265 2.259917 TCCATGAGAGGTCAAAGCTGA 58.740 47.619 0.00 0.00 35.88 4.26
265 266 2.775911 TCCATGAGAGGTCAAAGCTG 57.224 50.000 0.00 0.00 35.88 4.24
266 267 2.575279 ACATCCATGAGAGGTCAAAGCT 59.425 45.455 0.00 0.00 33.13 3.74
267 268 2.996631 ACATCCATGAGAGGTCAAAGC 58.003 47.619 0.00 0.00 33.13 3.51
268 269 4.155462 CACAACATCCATGAGAGGTCAAAG 59.845 45.833 0.00 0.00 38.94 2.77
269 270 4.074259 CACAACATCCATGAGAGGTCAAA 58.926 43.478 0.00 0.00 38.94 2.69
270 271 3.559811 CCACAACATCCATGAGAGGTCAA 60.560 47.826 0.00 0.00 38.94 3.18
271 272 2.026915 CCACAACATCCATGAGAGGTCA 60.027 50.000 0.00 0.00 38.94 4.02
272 273 2.636830 CCACAACATCCATGAGAGGTC 58.363 52.381 0.00 0.00 38.94 3.85
273 274 1.283029 CCCACAACATCCATGAGAGGT 59.717 52.381 0.00 0.00 42.52 3.85
274 275 1.283029 ACCCACAACATCCATGAGAGG 59.717 52.381 0.00 0.00 0.00 3.69
275 276 2.026915 TGACCCACAACATCCATGAGAG 60.027 50.000 0.00 0.00 0.00 3.20
276 277 1.984424 TGACCCACAACATCCATGAGA 59.016 47.619 0.00 0.00 0.00 3.27
277 278 2.086869 GTGACCCACAACATCCATGAG 58.913 52.381 0.00 0.00 34.08 2.90
278 279 1.423161 TGTGACCCACAACATCCATGA 59.577 47.619 0.00 0.00 41.69 3.07
279 280 1.541147 GTGTGACCCACAACATCCATG 59.459 52.381 0.95 0.00 46.28 3.66
280 281 1.881925 CGTGTGACCCACAACATCCAT 60.882 52.381 0.95 0.00 46.28 3.41
281 282 0.533978 CGTGTGACCCACAACATCCA 60.534 55.000 0.95 0.00 46.28 3.41
282 283 1.234615 CCGTGTGACCCACAACATCC 61.235 60.000 0.95 0.00 46.28 3.51
283 284 0.250124 TCCGTGTGACCCACAACATC 60.250 55.000 0.95 0.00 46.28 3.06
284 285 0.400213 ATCCGTGTGACCCACAACAT 59.600 50.000 0.95 0.00 46.28 2.71
285 286 0.181587 AATCCGTGTGACCCACAACA 59.818 50.000 0.95 0.00 46.28 3.33
286 287 1.265905 GAAATCCGTGTGACCCACAAC 59.734 52.381 0.95 0.00 46.28 3.32
287 288 1.600023 GAAATCCGTGTGACCCACAA 58.400 50.000 0.95 0.00 46.28 3.33
288 289 0.601576 CGAAATCCGTGTGACCCACA 60.602 55.000 0.00 0.00 44.78 4.17
289 290 0.320073 TCGAAATCCGTGTGACCCAC 60.320 55.000 0.00 0.00 40.89 4.61
290 291 0.611200 ATCGAAATCCGTGTGACCCA 59.389 50.000 0.00 0.00 39.75 4.51
291 292 1.734163 AATCGAAATCCGTGTGACCC 58.266 50.000 0.00 0.00 39.75 4.46
292 293 3.824414 AAAATCGAAATCCGTGTGACC 57.176 42.857 0.00 0.00 39.75 4.02
310 311 0.386113 GCACCCACCAAGCGTAAAAA 59.614 50.000 0.00 0.00 0.00 1.94
311 312 0.752009 TGCACCCACCAAGCGTAAAA 60.752 50.000 0.00 0.00 0.00 1.52
312 313 1.152943 TGCACCCACCAAGCGTAAA 60.153 52.632 0.00 0.00 0.00 2.01
313 314 1.894756 GTGCACCCACCAAGCGTAA 60.895 57.895 5.22 0.00 35.92 3.18
314 315 2.281208 GTGCACCCACCAAGCGTA 60.281 61.111 5.22 0.00 35.92 4.42
317 318 1.241315 ATTACGTGCACCCACCAAGC 61.241 55.000 12.15 0.00 38.79 4.01
318 319 0.802494 GATTACGTGCACCCACCAAG 59.198 55.000 12.15 0.00 38.79 3.61
319 320 0.398696 AGATTACGTGCACCCACCAA 59.601 50.000 12.15 0.00 38.79 3.67
320 321 0.321210 CAGATTACGTGCACCCACCA 60.321 55.000 12.15 0.00 38.79 4.17
321 322 0.321298 ACAGATTACGTGCACCCACC 60.321 55.000 12.15 0.00 38.79 4.61
322 323 1.519408 AACAGATTACGTGCACCCAC 58.481 50.000 12.15 0.00 38.62 4.61
323 324 2.147958 GAAACAGATTACGTGCACCCA 58.852 47.619 12.15 0.00 0.00 4.51
324 325 2.423577 AGAAACAGATTACGTGCACCC 58.576 47.619 12.15 0.00 0.00 4.61
325 326 4.219033 CAAAGAAACAGATTACGTGCACC 58.781 43.478 12.15 0.00 0.00 5.01
326 327 4.844267 ACAAAGAAACAGATTACGTGCAC 58.156 39.130 6.82 6.82 0.00 4.57
327 328 5.493133 AACAAAGAAACAGATTACGTGCA 57.507 34.783 0.00 0.00 0.00 4.57
328 329 6.656003 AGTAACAAAGAAACAGATTACGTGC 58.344 36.000 0.00 0.00 0.00 5.34
329 330 7.042321 TGGAGTAACAAAGAAACAGATTACGTG 60.042 37.037 0.00 0.00 0.00 4.49
330 331 6.987992 TGGAGTAACAAAGAAACAGATTACGT 59.012 34.615 0.00 0.00 0.00 3.57
331 332 7.416154 TGGAGTAACAAAGAAACAGATTACG 57.584 36.000 0.00 0.00 0.00 3.18
334 335 9.574516 ACTAATGGAGTAACAAAGAAACAGATT 57.425 29.630 0.00 0.00 36.27 2.40
335 336 9.574516 AACTAATGGAGTAACAAAGAAACAGAT 57.425 29.630 0.00 0.00 37.44 2.90
336 337 8.974060 AACTAATGGAGTAACAAAGAAACAGA 57.026 30.769 0.00 0.00 37.44 3.41
337 338 8.836413 TGAACTAATGGAGTAACAAAGAAACAG 58.164 33.333 0.00 0.00 37.44 3.16
338 339 8.740123 TGAACTAATGGAGTAACAAAGAAACA 57.260 30.769 0.00 0.00 37.44 2.83
339 340 9.827411 GATGAACTAATGGAGTAACAAAGAAAC 57.173 33.333 0.00 0.00 37.44 2.78
340 341 9.567776 TGATGAACTAATGGAGTAACAAAGAAA 57.432 29.630 0.00 0.00 37.44 2.52
341 342 9.567776 TTGATGAACTAATGGAGTAACAAAGAA 57.432 29.630 0.00 0.00 37.44 2.52
342 343 9.739276 ATTGATGAACTAATGGAGTAACAAAGA 57.261 29.630 0.00 0.00 37.44 2.52
350 351 9.466497 ACACAAATATTGATGAACTAATGGAGT 57.534 29.630 6.28 0.00 41.56 3.85
388 389 9.613428 CACATCCTTAAGTAATAGTCCATTTGA 57.387 33.333 0.97 0.00 0.00 2.69
389 390 9.396022 ACACATCCTTAAGTAATAGTCCATTTG 57.604 33.333 0.97 0.00 0.00 2.32
440 441 9.665719 TGACTACATATGAAGCAAAATAAGTGA 57.334 29.630 10.38 0.00 0.00 3.41
441 442 9.708222 GTGACTACATATGAAGCAAAATAAGTG 57.292 33.333 10.38 0.00 0.00 3.16
442 443 9.672673 AGTGACTACATATGAAGCAAAATAAGT 57.327 29.630 10.38 0.00 0.00 2.24
445 446 9.448438 ACAAGTGACTACATATGAAGCAAAATA 57.552 29.630 10.38 0.00 0.00 1.40
446 447 8.340618 ACAAGTGACTACATATGAAGCAAAAT 57.659 30.769 10.38 0.00 0.00 1.82
447 448 7.744087 ACAAGTGACTACATATGAAGCAAAA 57.256 32.000 10.38 0.00 0.00 2.44
448 449 7.443879 TCAACAAGTGACTACATATGAAGCAAA 59.556 33.333 10.38 0.00 0.00 3.68
449 450 6.934083 TCAACAAGTGACTACATATGAAGCAA 59.066 34.615 10.38 0.00 0.00 3.91
450 451 6.463360 TCAACAAGTGACTACATATGAAGCA 58.537 36.000 10.38 0.00 0.00 3.91
451 452 6.968131 TCAACAAGTGACTACATATGAAGC 57.032 37.500 10.38 0.00 0.00 3.86
458 459 9.778741 TCTAGAAATTTCAACAAGTGACTACAT 57.221 29.630 19.99 0.00 35.39 2.29
459 460 9.607988 TTCTAGAAATTTCAACAAGTGACTACA 57.392 29.630 19.99 0.00 35.39 2.74
462 463 9.178758 ACTTTCTAGAAATTTCAACAAGTGACT 57.821 29.630 18.02 0.00 35.39 3.41
463 464 9.439537 GACTTTCTAGAAATTTCAACAAGTGAC 57.560 33.333 18.02 7.79 35.39 3.67
464 465 9.173021 TGACTTTCTAGAAATTTCAACAAGTGA 57.827 29.630 18.02 12.47 0.00 3.41
465 466 9.787532 TTGACTTTCTAGAAATTTCAACAAGTG 57.212 29.630 24.92 12.05 32.16 3.16
479 480 9.595823 CCGTTCCTAAATATTTGACTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
480 481 9.595823 TCCGTTCCTAAATATTTGACTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
481 482 9.595823 CTCCGTTCCTAAATATTTGACTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
482 483 7.553044 CCTCCGTTCCTAAATATTTGACTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
483 484 7.201705 CCCTCCGTTCCTAAATATTTGACTTTC 60.202 40.741 11.05 0.00 0.00 2.62
484 485 6.602009 CCCTCCGTTCCTAAATATTTGACTTT 59.398 38.462 11.05 0.00 0.00 2.66
485 486 6.069847 TCCCTCCGTTCCTAAATATTTGACTT 60.070 38.462 11.05 0.00 0.00 3.01
486 487 5.427481 TCCCTCCGTTCCTAAATATTTGACT 59.573 40.000 11.05 0.00 0.00 3.41
487 488 5.677567 TCCCTCCGTTCCTAAATATTTGAC 58.322 41.667 11.05 3.92 0.00 3.18
488 489 5.427481 ACTCCCTCCGTTCCTAAATATTTGA 59.573 40.000 11.05 0.00 0.00 2.69
489 490 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
490 491 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
491 492 5.010415 CGTACTCCCTCCGTTCCTAAATATT 59.990 44.000 0.00 0.00 0.00 1.28
492 493 4.522022 CGTACTCCCTCCGTTCCTAAATAT 59.478 45.833 0.00 0.00 0.00 1.28
493 494 3.885297 CGTACTCCCTCCGTTCCTAAATA 59.115 47.826 0.00 0.00 0.00 1.40
494 495 2.692041 CGTACTCCCTCCGTTCCTAAAT 59.308 50.000 0.00 0.00 0.00 1.40
495 496 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
496 497 1.004745 ACGTACTCCCTCCGTTCCTAA 59.995 52.381 0.00 0.00 0.00 2.69
497 498 0.620556 ACGTACTCCCTCCGTTCCTA 59.379 55.000 0.00 0.00 0.00 2.94
498 499 0.251519 AACGTACTCCCTCCGTTCCT 60.252 55.000 0.00 0.00 40.46 3.36
499 500 0.605083 AAACGTACTCCCTCCGTTCC 59.395 55.000 0.00 0.00 43.32 3.62
500 501 2.445565 AAAACGTACTCCCTCCGTTC 57.554 50.000 0.00 0.00 43.32 3.95
501 502 3.554960 GGTTAAAACGTACTCCCTCCGTT 60.555 47.826 0.00 0.00 45.76 4.44
502 503 2.029020 GGTTAAAACGTACTCCCTCCGT 60.029 50.000 0.00 0.00 36.17 4.69
503 504 2.610433 GGTTAAAACGTACTCCCTCCG 58.390 52.381 0.00 0.00 0.00 4.63
504 505 2.568956 AGGGTTAAAACGTACTCCCTCC 59.431 50.000 9.79 0.00 40.96 4.30
505 506 3.007290 ACAGGGTTAAAACGTACTCCCTC 59.993 47.826 11.86 0.00 42.70 4.30
506 507 2.974794 ACAGGGTTAAAACGTACTCCCT 59.025 45.455 9.79 9.79 45.05 4.20
507 508 3.329386 GACAGGGTTAAAACGTACTCCC 58.671 50.000 0.00 0.00 35.56 4.30
508 509 2.989166 CGACAGGGTTAAAACGTACTCC 59.011 50.000 0.00 0.00 0.00 3.85
509 510 2.409715 GCGACAGGGTTAAAACGTACTC 59.590 50.000 0.00 0.00 0.00 2.59
510 511 2.224018 TGCGACAGGGTTAAAACGTACT 60.224 45.455 0.00 0.00 0.00 2.73
511 512 2.134346 TGCGACAGGGTTAAAACGTAC 58.866 47.619 0.00 0.00 0.00 3.67
512 513 2.522836 TGCGACAGGGTTAAAACGTA 57.477 45.000 0.00 0.00 0.00 3.57
513 514 1.886886 ATGCGACAGGGTTAAAACGT 58.113 45.000 0.00 0.00 0.00 3.99
514 515 2.977169 CAAATGCGACAGGGTTAAAACG 59.023 45.455 0.00 0.00 0.00 3.60
538 539 2.297597 AGGAGAACACGAGAGTTTCAGG 59.702 50.000 0.00 0.00 46.40 3.86
543 544 0.241481 GCGAGGAGAACACGAGAGTT 59.759 55.000 0.00 0.00 46.40 3.01
577 580 0.601558 TTCGAAGTCGCTAGCCACTT 59.398 50.000 25.17 25.17 39.60 3.16
578 581 0.601558 TTTCGAAGTCGCTAGCCACT 59.398 50.000 9.41 9.41 39.60 4.00
579 582 1.324736 CATTTCGAAGTCGCTAGCCAC 59.675 52.381 9.66 6.78 39.60 5.01
580 583 1.640428 CATTTCGAAGTCGCTAGCCA 58.360 50.000 9.66 0.00 39.60 4.75
581 584 0.301987 GCATTTCGAAGTCGCTAGCC 59.698 55.000 9.66 0.00 39.60 3.93
582 585 1.005557 CAGCATTTCGAAGTCGCTAGC 60.006 52.381 15.05 4.06 39.60 3.42
583 586 1.590238 CCAGCATTTCGAAGTCGCTAG 59.410 52.381 15.05 7.03 39.60 3.42
584 587 1.640428 CCAGCATTTCGAAGTCGCTA 58.360 50.000 15.05 0.00 39.60 4.26
585 588 1.021390 CCCAGCATTTCGAAGTCGCT 61.021 55.000 11.04 11.04 39.60 4.93
586 589 1.425428 CCCAGCATTTCGAAGTCGC 59.575 57.895 0.00 2.62 39.60 5.19
587 590 0.391130 TCCCCAGCATTTCGAAGTCG 60.391 55.000 0.00 0.00 41.45 4.18
588 591 1.373570 CTCCCCAGCATTTCGAAGTC 58.626 55.000 0.00 0.00 0.00 3.01
589 592 0.035056 CCTCCCCAGCATTTCGAAGT 60.035 55.000 0.00 0.00 0.00 3.01
590 593 0.253044 TCCTCCCCAGCATTTCGAAG 59.747 55.000 0.00 0.00 0.00 3.79
591 594 0.035439 GTCCTCCCCAGCATTTCGAA 60.035 55.000 0.00 0.00 0.00 3.71
592 595 0.909610 AGTCCTCCCCAGCATTTCGA 60.910 55.000 0.00 0.00 0.00 3.71
593 596 0.830648 TAGTCCTCCCCAGCATTTCG 59.169 55.000 0.00 0.00 0.00 3.46
602 605 0.323178 TCGTGACTGTAGTCCTCCCC 60.323 60.000 9.37 0.00 44.15 4.81
608 611 3.546417 CGCCTCTTATCGTGACTGTAGTC 60.546 52.174 5.09 5.09 44.97 2.59
638 641 2.357881 TGCACGCAGAGCCTTCAG 60.358 61.111 0.00 0.00 45.43 3.02
671 674 5.340439 AGTACAGGAGCAGTGGTAAATAC 57.660 43.478 0.00 0.00 0.00 1.89
672 675 7.670605 ATAAGTACAGGAGCAGTGGTAAATA 57.329 36.000 0.00 0.00 0.00 1.40
673 676 4.910458 AAGTACAGGAGCAGTGGTAAAT 57.090 40.909 0.00 0.00 0.00 1.40
697 700 0.745845 GTACCGGAGAGAGTACGCCA 60.746 60.000 9.46 0.00 30.41 5.69
698 701 0.463474 AGTACCGGAGAGAGTACGCC 60.463 60.000 9.46 0.00 42.92 5.68
709 712 3.294214 GGTTGAAGATAGGAGTACCGGA 58.706 50.000 9.46 0.00 41.83 5.14
710 713 2.364647 GGGTTGAAGATAGGAGTACCGG 59.635 54.545 0.00 0.00 41.83 5.28
712 715 4.470304 AGTTGGGTTGAAGATAGGAGTACC 59.530 45.833 0.00 0.00 0.00 3.34
714 717 6.697641 AAAGTTGGGTTGAAGATAGGAGTA 57.302 37.500 0.00 0.00 0.00 2.59
715 718 5.584551 AAAGTTGGGTTGAAGATAGGAGT 57.415 39.130 0.00 0.00 0.00 3.85
716 719 6.259550 CAAAAGTTGGGTTGAAGATAGGAG 57.740 41.667 0.00 0.00 0.00 3.69
733 736 1.537202 GAGATCTTGCGCACCAAAAGT 59.463 47.619 11.12 0.00 31.94 2.66
743 761 1.134530 GTCGACACCGAGATCTTGCG 61.135 60.000 11.55 3.11 46.52 4.85
763 781 2.544685 CATGTCCATCTCCAAGTCGTC 58.455 52.381 0.00 0.00 0.00 4.20
766 784 2.158842 CCTCCATGTCCATCTCCAAGTC 60.159 54.545 0.00 0.00 0.00 3.01
797 815 2.498167 GCCACGGCATATCTGAATCTT 58.502 47.619 2.36 0.00 41.49 2.40
811 834 2.434884 ATTCTGAGCACGCCACGG 60.435 61.111 0.00 0.00 0.00 4.94
814 837 2.815211 GCGATTCTGAGCACGCCA 60.815 61.111 11.82 0.00 44.27 5.69
849 872 3.339253 ACATTACATGACTCTGCTGCA 57.661 42.857 0.88 0.88 0.00 4.41
856 879 2.785679 GCGCCAAACATTACATGACTC 58.214 47.619 0.00 0.00 0.00 3.36
860 888 2.254918 TTCGCGCCAAACATTACATG 57.745 45.000 0.00 0.00 0.00 3.21
1155 1266 2.997897 GACTGGAGGACCACCGCT 60.998 66.667 3.27 0.00 41.77 5.52
1229 1354 2.125106 GCCGGCCGAAGAAGATGT 60.125 61.111 30.73 0.00 0.00 3.06
1255 1380 2.496817 CCAGAGGCTGTAGTCCGC 59.503 66.667 0.00 0.00 0.00 5.54
1270 1395 0.982852 ATCTTGGCCTCGATGTCCCA 60.983 55.000 3.32 0.00 0.00 4.37
1276 1401 2.511452 CCCGGATCTTGGCCTCGAT 61.511 63.158 0.73 5.59 0.00 3.59
1479 1604 3.728373 ATCCTGTTCCCCACCGCC 61.728 66.667 0.00 0.00 0.00 6.13
1480 1605 2.438434 CATCCTGTTCCCCACCGC 60.438 66.667 0.00 0.00 0.00 5.68
1481 1606 2.438434 GCATCCTGTTCCCCACCG 60.438 66.667 0.00 0.00 0.00 4.94
1482 1607 2.043953 GGCATCCTGTTCCCCACC 60.044 66.667 0.00 0.00 0.00 4.61
1483 1608 1.379044 CAGGCATCCTGTTCCCCAC 60.379 63.158 4.74 0.00 45.82 4.61
1484 1609 3.089838 CAGGCATCCTGTTCCCCA 58.910 61.111 4.74 0.00 45.82 4.96
1651 1794 2.124942 CTCCTTCTTGCTCGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
1682 1825 2.159085 CGGTACTGTTTCCTCATCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
1774 1926 4.358851 CCTCTAAGAAGCTTCACGATCAG 58.641 47.826 27.57 14.34 0.00 2.90
1837 1995 2.026822 GGCAAGGGAGTTCAGAGATGAA 60.027 50.000 0.00 0.00 0.00 2.57
1838 1996 1.556911 GGCAAGGGAGTTCAGAGATGA 59.443 52.381 0.00 0.00 0.00 2.92
1864 2030 0.809385 CATTCAGGCTGCAGAACTGG 59.191 55.000 27.84 15.07 33.19 4.00
1923 2095 2.034939 TGAAGGATGCTTGCACAAACTG 59.965 45.455 3.35 0.00 0.00 3.16
1931 2103 2.877168 CTCCATACTGAAGGATGCTTGC 59.123 50.000 3.35 0.00 32.53 4.01
1933 2105 4.411540 ACATCTCCATACTGAAGGATGCTT 59.588 41.667 0.00 0.00 35.41 3.91
1937 2109 8.497745 ACAATAAACATCTCCATACTGAAGGAT 58.502 33.333 0.00 0.00 32.53 3.24
1938 2110 7.861629 ACAATAAACATCTCCATACTGAAGGA 58.138 34.615 0.00 0.00 0.00 3.36
1939 2111 7.770433 TGACAATAAACATCTCCATACTGAAGG 59.230 37.037 0.00 0.00 0.00 3.46
1940 2112 8.722480 TGACAATAAACATCTCCATACTGAAG 57.278 34.615 0.00 0.00 0.00 3.02
1999 2171 4.478206 TGAGATAGCCAAGGAAACTCAG 57.522 45.455 0.00 0.00 42.68 3.35
2022 2194 3.639094 AGACTAGATGCATTCCGTTAGCT 59.361 43.478 0.00 0.00 0.00 3.32
2089 2261 2.849294 AAGAAACCACTCTCCTCTGC 57.151 50.000 0.00 0.00 0.00 4.26
2197 2369 6.016693 TCGACAAGAATCTATCATCCTCTGTC 60.017 42.308 0.00 0.00 0.00 3.51
2203 2375 8.181573 GTCTAGATCGACAAGAATCTATCATCC 58.818 40.741 0.00 0.00 34.11 3.51
2206 2378 7.717436 ACTGTCTAGATCGACAAGAATCTATCA 59.283 37.037 0.00 0.00 42.80 2.15
2210 2382 5.067153 CCACTGTCTAGATCGACAAGAATCT 59.933 44.000 0.00 0.00 42.80 2.40
2362 2549 3.399330 GCCAAGTGCTGTTAGTGTCTTA 58.601 45.455 0.00 0.00 36.87 2.10
2363 2550 2.222027 GCCAAGTGCTGTTAGTGTCTT 58.778 47.619 0.00 0.00 36.87 3.01
2364 2551 1.543429 GGCCAAGTGCTGTTAGTGTCT 60.543 52.381 0.00 0.00 40.92 3.41
2418 2626 2.489722 GGAGTTCATTCTTGGGTCTTGC 59.510 50.000 0.00 0.00 0.00 4.01
2424 2632 6.739331 AGAGTATAGGAGTTCATTCTTGGG 57.261 41.667 0.00 0.00 0.00 4.12
2428 2636 9.716556 TCCTTTTAGAGTATAGGAGTTCATTCT 57.283 33.333 0.00 0.00 33.08 2.40
2448 2656 8.514504 AGAGGTATATTTGAATGGGATCCTTTT 58.485 33.333 12.58 5.54 0.00 2.27
2491 2702 5.862678 AAACCGAAGATTTCCCTCAAAAA 57.137 34.783 0.00 0.00 0.00 1.94
2492 2703 8.638629 TTATAAACCGAAGATTTCCCTCAAAA 57.361 30.769 0.00 0.00 0.00 2.44
2493 2704 8.817092 ATTATAAACCGAAGATTTCCCTCAAA 57.183 30.769 0.00 0.00 0.00 2.69
2494 2705 8.682710 CAATTATAAACCGAAGATTTCCCTCAA 58.317 33.333 0.00 0.00 0.00 3.02
2495 2706 8.050325 TCAATTATAAACCGAAGATTTCCCTCA 58.950 33.333 0.00 0.00 0.00 3.86
2496 2707 8.343366 GTCAATTATAAACCGAAGATTTCCCTC 58.657 37.037 0.00 0.00 0.00 4.30
2497 2708 8.053355 AGTCAATTATAAACCGAAGATTTCCCT 58.947 33.333 0.00 0.00 0.00 4.20
2498 2709 8.129211 CAGTCAATTATAAACCGAAGATTTCCC 58.871 37.037 0.00 0.00 0.00 3.97
2499 2710 8.889717 TCAGTCAATTATAAACCGAAGATTTCC 58.110 33.333 0.00 0.00 0.00 3.13
2500 2711 9.704098 GTCAGTCAATTATAAACCGAAGATTTC 57.296 33.333 0.00 0.00 0.00 2.17
2501 2712 9.226606 TGTCAGTCAATTATAAACCGAAGATTT 57.773 29.630 0.00 0.00 0.00 2.17
2502 2713 8.786826 TGTCAGTCAATTATAAACCGAAGATT 57.213 30.769 0.00 0.00 0.00 2.40
2503 2714 8.258007 TCTGTCAGTCAATTATAAACCGAAGAT 58.742 33.333 0.00 0.00 0.00 2.40
2518 2729 4.216902 CCTGCAATTTGATCTGTCAGTCAA 59.783 41.667 11.49 11.49 35.39 3.18
2534 2745 1.299541 CCGCGAGAATAACCTGCAAT 58.700 50.000 8.23 0.00 0.00 3.56
2552 2763 3.059386 TTGCCCGGATTCAACGCC 61.059 61.111 0.73 0.00 0.00 5.68
2606 2817 6.681777 ACAATATTTTGGTTCTCTTGTCAGC 58.318 36.000 0.89 0.00 37.15 4.26
2635 2846 5.393027 GGTGACTCTTGAAAAAGTGCTTGAA 60.393 40.000 0.00 0.00 0.00 2.69
2643 2854 7.922278 TGATTGATTTGGTGACTCTTGAAAAAG 59.078 33.333 0.00 0.00 0.00 2.27
2647 2858 6.957920 TTGATTGATTTGGTGACTCTTGAA 57.042 33.333 0.00 0.00 0.00 2.69
2648 2859 6.957920 TTTGATTGATTTGGTGACTCTTGA 57.042 33.333 0.00 0.00 0.00 3.02
2656 2867 6.455913 GCCGAATGAATTTGATTGATTTGGTG 60.456 38.462 15.79 0.00 44.50 4.17
2667 2878 4.873259 TCGATACTTGCCGAATGAATTTGA 59.127 37.500 0.00 0.00 0.00 2.69
2669 2880 4.260212 CGTCGATACTTGCCGAATGAATTT 60.260 41.667 0.00 0.00 36.50 1.82
2679 2890 1.258982 CATCTTGCGTCGATACTTGCC 59.741 52.381 0.00 0.00 0.00 4.52
2687 2898 0.171231 CAGTCTCCATCTTGCGTCGA 59.829 55.000 0.00 0.00 0.00 4.20
2724 2942 7.330700 AGGGTTATTTATGTTGTGCAAATTTCG 59.669 33.333 0.00 0.00 0.00 3.46
2758 2987 1.669760 CGGTTTCGCCCTAGTTGCA 60.670 57.895 2.84 0.00 0.00 4.08
2761 2990 1.079336 GCTCGGTTTCGCCCTAGTT 60.079 57.895 0.00 0.00 36.13 2.24
2798 3027 1.340889 GCCCTGTCAACAAATGCTTCA 59.659 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.