Multiple sequence alignment - TraesCS1D01G410600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G410600 chr1D 100.000 4538 0 0 1 4538 472399083 472394546 0.000000e+00 8381.0
1 TraesCS1D01G410600 chr1A 89.851 3636 205 65 601 4180 566387031 566383504 0.000000e+00 4519.0
2 TraesCS1D01G410600 chr1A 82.178 202 23 9 3895 4092 566353146 566352954 1.310000e-35 161.0
3 TraesCS1D01G410600 chr1A 77.389 314 39 20 3881 4180 566357893 566357598 1.690000e-34 158.0
4 TraesCS1D01G410600 chr1A 86.667 120 9 6 359 476 566387370 566387256 4.770000e-25 126.0
5 TraesCS1D01G410600 chr1B 89.888 3570 187 68 705 4180 656659981 656656492 0.000000e+00 4433.0
6 TraesCS1D01G410600 chr1B 79.592 343 46 14 4169 4489 656656450 656656110 1.640000e-54 224.0
7 TraesCS1D01G410600 chr1B 78.155 206 23 15 3895 4092 656452926 656452735 1.330000e-20 111.0
8 TraesCS1D01G410600 chr1B 78.049 164 19 9 511 664 656660281 656660125 2.250000e-13 87.9
9 TraesCS1D01G410600 chr4B 82.870 216 32 4 1 216 368415649 368415859 5.990000e-44 189.0
10 TraesCS1D01G410600 chr7D 83.251 203 27 5 1 203 12900551 12900746 3.610000e-41 180.0
11 TraesCS1D01G410600 chr3D 82.927 205 27 6 1 203 613928679 613928481 1.300000e-40 178.0
12 TraesCS1D01G410600 chr3D 80.597 201 32 5 4 203 582892913 582893107 1.020000e-31 148.0
13 TraesCS1D01G410600 chr7A 81.776 214 34 4 1 214 42800035 42800243 1.680000e-39 174.0
14 TraesCS1D01G410600 chr2B 83.529 170 24 2 1 170 707608609 707608774 6.080000e-34 156.0
15 TraesCS1D01G410600 chr7B 98.246 57 1 0 2049 2105 5342538 5342482 2.890000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G410600 chr1D 472394546 472399083 4537 True 8381.000000 8381 100.000000 1 4538 1 chr1D.!!$R1 4537
1 TraesCS1D01G410600 chr1A 566383504 566387370 3866 True 2322.500000 4519 88.259000 359 4180 2 chr1A.!!$R3 3821
2 TraesCS1D01G410600 chr1B 656656110 656660281 4171 True 1581.633333 4433 82.509667 511 4489 3 chr1B.!!$R2 3978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.174617 TGGTTGTATGCATCGCTCGA 59.825 50.0 0.19 0.0 0.00 4.04 F
192 193 0.256752 TCGATTCAGAGACCGGGGTA 59.743 55.0 6.32 0.0 0.00 3.69 F
201 202 0.342313 AGACCGGGGTAAATCCTCCT 59.658 55.0 6.32 0.0 36.25 3.69 F
664 882 0.402566 CCCCTCCCTGATCCTCCATT 60.403 60.0 0.00 0.0 0.00 3.16 F
2424 2685 0.475906 AGGTTGAAGCTGCCAAGAGT 59.524 50.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2241 0.323451 TCAGCAGGAGAGCGTTCCTA 60.323 55.000 11.12 0.0 45.86 2.94 R
2174 2432 0.615331 AGCTGAATTCCGAGCTTCCA 59.385 50.000 13.15 0.0 43.15 3.53 R
2208 2466 4.569023 CGCTCGCGGCATACCTCA 62.569 66.667 17.57 0.0 41.91 3.86 R
2484 2745 0.179000 CCTCGTCCTCCATTCTTGGG 59.821 60.000 0.00 0.0 43.81 4.12 R
4326 4714 0.249031 GCTGGCAACACACTGAAACC 60.249 55.000 0.00 0.0 46.17 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.030668 GTGAGGCCACCAAATTTCTTG 57.969 47.619 5.01 0.00 37.33 3.02
24 25 1.969923 TGAGGCCACCAAATTTCTTGG 59.030 47.619 5.01 9.44 44.91 3.61
30 31 2.433637 CCAAATTTCTTGGTGCGCG 58.566 52.632 0.00 0.00 34.92 6.86
31 32 0.318614 CCAAATTTCTTGGTGCGCGT 60.319 50.000 8.43 0.00 34.92 6.01
32 33 0.777631 CAAATTTCTTGGTGCGCGTG 59.222 50.000 8.43 0.00 0.00 5.34
33 34 0.318614 AAATTTCTTGGTGCGCGTGG 60.319 50.000 8.43 0.00 0.00 4.94
34 35 2.747507 AATTTCTTGGTGCGCGTGGC 62.748 55.000 8.43 0.00 43.96 5.01
53 54 4.758251 CGCGGTCAGGGCACATCA 62.758 66.667 0.00 0.00 0.00 3.07
54 55 2.124570 GCGGTCAGGGCACATCAT 60.125 61.111 0.00 0.00 0.00 2.45
55 56 2.182842 GCGGTCAGGGCACATCATC 61.183 63.158 0.00 0.00 0.00 2.92
56 57 1.221566 CGGTCAGGGCACATCATCA 59.778 57.895 0.00 0.00 0.00 3.07
57 58 0.392863 CGGTCAGGGCACATCATCAA 60.393 55.000 0.00 0.00 0.00 2.57
58 59 1.748244 CGGTCAGGGCACATCATCAAT 60.748 52.381 0.00 0.00 0.00 2.57
59 60 1.952296 GGTCAGGGCACATCATCAATC 59.048 52.381 0.00 0.00 0.00 2.67
60 61 2.422519 GGTCAGGGCACATCATCAATCT 60.423 50.000 0.00 0.00 0.00 2.40
61 62 3.285484 GTCAGGGCACATCATCAATCTT 58.715 45.455 0.00 0.00 0.00 2.40
62 63 3.066342 GTCAGGGCACATCATCAATCTTG 59.934 47.826 0.00 0.00 0.00 3.02
63 64 3.021695 CAGGGCACATCATCAATCTTGT 58.978 45.455 0.00 0.00 0.00 3.16
64 65 4.080413 TCAGGGCACATCATCAATCTTGTA 60.080 41.667 0.00 0.00 0.00 2.41
65 66 4.641541 CAGGGCACATCATCAATCTTGTAA 59.358 41.667 0.00 0.00 0.00 2.41
66 67 4.885907 AGGGCACATCATCAATCTTGTAAG 59.114 41.667 0.00 0.00 0.00 2.34
67 68 4.641989 GGGCACATCATCAATCTTGTAAGT 59.358 41.667 0.00 0.00 0.00 2.24
68 69 5.822519 GGGCACATCATCAATCTTGTAAGTA 59.177 40.000 0.00 0.00 0.00 2.24
69 70 6.017605 GGGCACATCATCAATCTTGTAAGTAG 60.018 42.308 0.00 0.00 0.00 2.57
70 71 6.017605 GGCACATCATCAATCTTGTAAGTAGG 60.018 42.308 0.00 0.00 0.00 3.18
71 72 6.017605 GCACATCATCAATCTTGTAAGTAGGG 60.018 42.308 0.00 0.00 0.00 3.53
72 73 7.050377 CACATCATCAATCTTGTAAGTAGGGT 58.950 38.462 0.00 0.00 0.00 4.34
73 74 7.011763 CACATCATCAATCTTGTAAGTAGGGTG 59.988 40.741 0.00 0.00 0.00 4.61
74 75 6.867519 TCATCAATCTTGTAAGTAGGGTGA 57.132 37.500 0.00 0.00 0.00 4.02
75 76 7.437713 TCATCAATCTTGTAAGTAGGGTGAT 57.562 36.000 0.00 0.00 0.00 3.06
76 77 8.547481 TCATCAATCTTGTAAGTAGGGTGATA 57.453 34.615 0.00 0.00 0.00 2.15
77 78 9.159254 TCATCAATCTTGTAAGTAGGGTGATAT 57.841 33.333 0.00 0.00 0.00 1.63
78 79 9.784531 CATCAATCTTGTAAGTAGGGTGATATT 57.215 33.333 0.00 0.00 0.00 1.28
105 106 6.452494 TTTTGTCTAAACGGTGATTTTGGA 57.548 33.333 0.00 0.00 0.00 3.53
106 107 6.642707 TTTGTCTAAACGGTGATTTTGGAT 57.357 33.333 0.00 0.00 0.00 3.41
107 108 6.642707 TTGTCTAAACGGTGATTTTGGATT 57.357 33.333 0.00 0.00 0.00 3.01
108 109 6.007936 TGTCTAAACGGTGATTTTGGATTG 57.992 37.500 0.00 0.00 0.00 2.67
109 110 5.765677 TGTCTAAACGGTGATTTTGGATTGA 59.234 36.000 0.00 0.00 0.00 2.57
110 111 6.432783 TGTCTAAACGGTGATTTTGGATTGAT 59.567 34.615 0.00 0.00 0.00 2.57
111 112 6.967199 GTCTAAACGGTGATTTTGGATTGATC 59.033 38.462 0.00 0.00 0.00 2.92
112 113 5.982890 AAACGGTGATTTTGGATTGATCT 57.017 34.783 0.00 0.00 0.00 2.75
113 114 8.044309 TCTAAACGGTGATTTTGGATTGATCTA 58.956 33.333 0.00 0.00 0.00 1.98
114 115 7.645058 AAACGGTGATTTTGGATTGATCTAT 57.355 32.000 0.00 0.00 0.00 1.98
115 116 6.624352 ACGGTGATTTTGGATTGATCTATG 57.376 37.500 0.00 0.00 0.00 2.23
116 117 6.122277 ACGGTGATTTTGGATTGATCTATGT 58.878 36.000 0.00 0.00 0.00 2.29
117 118 7.279615 ACGGTGATTTTGGATTGATCTATGTA 58.720 34.615 0.00 0.00 0.00 2.29
118 119 7.939039 ACGGTGATTTTGGATTGATCTATGTAT 59.061 33.333 0.00 0.00 0.00 2.29
119 120 9.435688 CGGTGATTTTGGATTGATCTATGTATA 57.564 33.333 0.00 0.00 0.00 1.47
148 149 9.554724 TTTTGTAAGATCTTTGTCGAATAATGC 57.445 29.630 14.36 0.00 0.00 3.56
149 150 7.841915 TGTAAGATCTTTGTCGAATAATGCA 57.158 32.000 14.36 0.00 0.00 3.96
150 151 8.262715 TGTAAGATCTTTGTCGAATAATGCAA 57.737 30.769 14.36 0.00 0.00 4.08
151 152 8.892723 TGTAAGATCTTTGTCGAATAATGCAAT 58.107 29.630 14.36 0.00 0.00 3.56
152 153 9.722056 GTAAGATCTTTGTCGAATAATGCAATT 57.278 29.630 14.36 0.00 41.28 2.32
155 156 9.941664 AGATCTTTGTCGAATAATGCAATTAAG 57.058 29.630 0.00 0.00 42.96 1.85
156 157 9.935682 GATCTTTGTCGAATAATGCAATTAAGA 57.064 29.630 0.00 0.00 42.96 2.10
158 159 9.720667 TCTTTGTCGAATAATGCAATTAAGATG 57.279 29.630 0.00 0.00 42.96 2.90
159 160 8.854979 TTTGTCGAATAATGCAATTAAGATGG 57.145 30.769 0.00 0.00 42.96 3.51
160 161 7.566760 TGTCGAATAATGCAATTAAGATGGT 57.433 32.000 0.00 0.00 42.96 3.55
161 162 7.995289 TGTCGAATAATGCAATTAAGATGGTT 58.005 30.769 0.00 0.00 42.96 3.67
162 163 7.914871 TGTCGAATAATGCAATTAAGATGGTTG 59.085 33.333 0.00 0.00 42.96 3.77
163 164 7.915397 GTCGAATAATGCAATTAAGATGGTTGT 59.085 33.333 0.00 0.00 42.96 3.32
164 165 9.114952 TCGAATAATGCAATTAAGATGGTTGTA 57.885 29.630 0.00 0.00 42.96 2.41
165 166 9.897744 CGAATAATGCAATTAAGATGGTTGTAT 57.102 29.630 0.00 0.00 42.96 2.29
167 168 9.480053 AATAATGCAATTAAGATGGTTGTATGC 57.520 29.630 0.00 0.00 42.96 3.14
168 169 5.911378 TGCAATTAAGATGGTTGTATGCA 57.089 34.783 0.00 0.00 38.78 3.96
169 170 6.468333 TGCAATTAAGATGGTTGTATGCAT 57.532 33.333 3.79 3.79 36.46 3.96
170 171 6.506147 TGCAATTAAGATGGTTGTATGCATC 58.494 36.000 0.19 0.00 36.46 3.91
171 172 5.626543 GCAATTAAGATGGTTGTATGCATCG 59.373 40.000 0.19 0.00 0.00 3.84
172 173 4.811555 TTAAGATGGTTGTATGCATCGC 57.188 40.909 0.19 0.00 0.00 4.58
173 174 2.627515 AGATGGTTGTATGCATCGCT 57.372 45.000 0.19 0.00 0.00 4.93
174 175 2.487934 AGATGGTTGTATGCATCGCTC 58.512 47.619 0.19 0.00 0.00 5.03
175 176 1.193203 GATGGTTGTATGCATCGCTCG 59.807 52.381 0.19 0.00 0.00 5.03
176 177 0.174617 TGGTTGTATGCATCGCTCGA 59.825 50.000 0.19 0.00 0.00 4.04
177 178 1.202521 TGGTTGTATGCATCGCTCGAT 60.203 47.619 0.19 0.00 34.81 3.59
178 179 1.867233 GGTTGTATGCATCGCTCGATT 59.133 47.619 0.19 0.00 31.62 3.34
179 180 2.096713 GGTTGTATGCATCGCTCGATTC 60.097 50.000 0.19 0.00 31.62 2.52
180 181 2.507339 TGTATGCATCGCTCGATTCA 57.493 45.000 0.19 7.02 32.87 2.57
181 182 2.397549 TGTATGCATCGCTCGATTCAG 58.602 47.619 0.19 0.00 31.96 3.02
182 183 2.034558 TGTATGCATCGCTCGATTCAGA 59.965 45.455 0.19 3.40 31.96 3.27
183 184 1.780806 ATGCATCGCTCGATTCAGAG 58.219 50.000 10.00 0.00 41.03 3.35
184 185 0.740737 TGCATCGCTCGATTCAGAGA 59.259 50.000 1.55 2.22 40.57 3.10
185 186 1.127701 GCATCGCTCGATTCAGAGAC 58.872 55.000 1.55 1.99 40.57 3.36
186 187 1.764851 CATCGCTCGATTCAGAGACC 58.235 55.000 1.55 0.00 40.57 3.85
187 188 0.309302 ATCGCTCGATTCAGAGACCG 59.691 55.000 0.00 5.14 40.57 4.79
188 189 1.298713 CGCTCGATTCAGAGACCGG 60.299 63.158 0.00 0.00 40.57 5.28
189 190 1.066587 GCTCGATTCAGAGACCGGG 59.933 63.158 6.32 0.00 40.57 5.73
190 191 1.736586 CTCGATTCAGAGACCGGGG 59.263 63.158 6.32 0.00 40.57 5.73
191 192 1.000019 TCGATTCAGAGACCGGGGT 60.000 57.895 6.32 0.00 0.00 4.95
192 193 0.256752 TCGATTCAGAGACCGGGGTA 59.743 55.000 6.32 0.00 0.00 3.69
193 194 1.108776 CGATTCAGAGACCGGGGTAA 58.891 55.000 6.32 0.00 0.00 2.85
194 195 1.479323 CGATTCAGAGACCGGGGTAAA 59.521 52.381 6.32 0.00 0.00 2.01
195 196 2.102588 CGATTCAGAGACCGGGGTAAAT 59.897 50.000 6.32 0.00 0.00 1.40
196 197 3.729966 GATTCAGAGACCGGGGTAAATC 58.270 50.000 6.32 3.68 0.00 2.17
197 198 1.492764 TCAGAGACCGGGGTAAATCC 58.507 55.000 6.32 0.00 0.00 3.01
198 199 1.007963 TCAGAGACCGGGGTAAATCCT 59.992 52.381 6.32 0.00 36.25 3.24
199 200 1.413077 CAGAGACCGGGGTAAATCCTC 59.587 57.143 6.32 0.00 36.25 3.71
200 201 0.757512 GAGACCGGGGTAAATCCTCC 59.242 60.000 6.32 0.00 36.25 4.30
201 202 0.342313 AGACCGGGGTAAATCCTCCT 59.658 55.000 6.32 0.00 36.25 3.69
202 203 1.210538 GACCGGGGTAAATCCTCCTT 58.789 55.000 6.32 0.00 36.25 3.36
203 204 0.916809 ACCGGGGTAAATCCTCCTTG 59.083 55.000 6.32 0.00 36.25 3.61
204 205 1.209621 CCGGGGTAAATCCTCCTTGA 58.790 55.000 0.00 0.00 36.25 3.02
205 206 1.562475 CCGGGGTAAATCCTCCTTGAA 59.438 52.381 0.00 0.00 36.25 2.69
206 207 2.025699 CCGGGGTAAATCCTCCTTGAAA 60.026 50.000 0.00 0.00 36.25 2.69
207 208 3.562609 CCGGGGTAAATCCTCCTTGAAAA 60.563 47.826 0.00 0.00 36.25 2.29
208 209 4.083565 CGGGGTAAATCCTCCTTGAAAAA 58.916 43.478 0.00 0.00 36.25 1.94
232 233 7.793927 AAAAATCTCTTCGGATTCCTATGTC 57.206 36.000 0.30 0.00 35.19 3.06
233 234 6.739331 AAATCTCTTCGGATTCCTATGTCT 57.261 37.500 0.30 0.00 35.19 3.41
234 235 6.739331 AATCTCTTCGGATTCCTATGTCTT 57.261 37.500 0.30 0.00 31.08 3.01
235 236 5.776173 TCTCTTCGGATTCCTATGTCTTC 57.224 43.478 0.30 0.00 0.00 2.87
236 237 5.450453 TCTCTTCGGATTCCTATGTCTTCT 58.550 41.667 0.30 0.00 0.00 2.85
237 238 5.533154 TCTCTTCGGATTCCTATGTCTTCTC 59.467 44.000 0.30 0.00 0.00 2.87
238 239 5.450453 TCTTCGGATTCCTATGTCTTCTCT 58.550 41.667 0.30 0.00 0.00 3.10
239 240 5.533154 TCTTCGGATTCCTATGTCTTCTCTC 59.467 44.000 0.30 0.00 0.00 3.20
240 241 5.055265 TCGGATTCCTATGTCTTCTCTCT 57.945 43.478 0.30 0.00 0.00 3.10
241 242 5.450453 TCGGATTCCTATGTCTTCTCTCTT 58.550 41.667 0.30 0.00 0.00 2.85
242 243 5.300539 TCGGATTCCTATGTCTTCTCTCTTG 59.699 44.000 0.30 0.00 0.00 3.02
243 244 5.068460 CGGATTCCTATGTCTTCTCTCTTGT 59.932 44.000 0.30 0.00 0.00 3.16
244 245 6.512297 GGATTCCTATGTCTTCTCTCTTGTC 58.488 44.000 0.00 0.00 0.00 3.18
245 246 5.568685 TTCCTATGTCTTCTCTCTTGTCG 57.431 43.478 0.00 0.00 0.00 4.35
246 247 3.378742 TCCTATGTCTTCTCTCTTGTCGC 59.621 47.826 0.00 0.00 0.00 5.19
247 248 2.270275 ATGTCTTCTCTCTTGTCGCG 57.730 50.000 0.00 0.00 0.00 5.87
248 249 1.235724 TGTCTTCTCTCTTGTCGCGA 58.764 50.000 3.71 3.71 0.00 5.87
249 250 1.607148 TGTCTTCTCTCTTGTCGCGAA 59.393 47.619 12.06 0.00 0.00 4.70
250 251 2.229062 TGTCTTCTCTCTTGTCGCGAAT 59.771 45.455 12.06 0.00 0.00 3.34
251 252 3.439129 TGTCTTCTCTCTTGTCGCGAATA 59.561 43.478 12.06 0.00 0.00 1.75
252 253 4.082949 TGTCTTCTCTCTTGTCGCGAATAA 60.083 41.667 12.06 8.76 0.00 1.40
253 254 4.857588 GTCTTCTCTCTTGTCGCGAATAAA 59.142 41.667 12.06 5.06 0.00 1.40
254 255 5.345202 GTCTTCTCTCTTGTCGCGAATAAAA 59.655 40.000 12.06 2.23 0.00 1.52
255 256 5.345202 TCTTCTCTCTTGTCGCGAATAAAAC 59.655 40.000 12.06 0.00 0.00 2.43
256 257 4.552355 TCTCTCTTGTCGCGAATAAAACA 58.448 39.130 12.06 0.00 0.00 2.83
257 258 4.384846 TCTCTCTTGTCGCGAATAAAACAC 59.615 41.667 12.06 0.00 0.00 3.32
258 259 4.052608 TCTCTTGTCGCGAATAAAACACA 58.947 39.130 12.06 0.00 0.00 3.72
259 260 4.084745 TCTCTTGTCGCGAATAAAACACAC 60.085 41.667 12.06 0.00 0.00 3.82
260 261 3.556365 TCTTGTCGCGAATAAAACACACA 59.444 39.130 12.06 0.00 0.00 3.72
261 262 3.946308 TGTCGCGAATAAAACACACAA 57.054 38.095 12.06 0.00 0.00 3.33
262 263 4.475763 TGTCGCGAATAAAACACACAAT 57.524 36.364 12.06 0.00 0.00 2.71
263 264 4.849883 TGTCGCGAATAAAACACACAATT 58.150 34.783 12.06 0.00 0.00 2.32
264 265 5.986936 TGTCGCGAATAAAACACACAATTA 58.013 33.333 12.06 0.00 0.00 1.40
265 266 6.604012 TGTCGCGAATAAAACACACAATTAT 58.396 32.000 12.06 0.00 0.00 1.28
266 267 6.521477 TGTCGCGAATAAAACACACAATTATG 59.479 34.615 12.06 0.00 0.00 1.90
267 268 5.509972 TCGCGAATAAAACACACAATTATGC 59.490 36.000 6.20 0.00 0.00 3.14
268 269 5.284897 CGCGAATAAAACACACAATTATGCA 59.715 36.000 0.00 0.00 0.00 3.96
269 270 6.504644 CGCGAATAAAACACACAATTATGCAG 60.505 38.462 0.00 0.00 0.00 4.41
270 271 6.526325 GCGAATAAAACACACAATTATGCAGA 59.474 34.615 0.00 0.00 0.00 4.26
271 272 7.220683 GCGAATAAAACACACAATTATGCAGAT 59.779 33.333 0.00 0.00 0.00 2.90
272 273 9.075519 CGAATAAAACACACAATTATGCAGATT 57.924 29.630 0.00 0.00 0.00 2.40
274 275 6.470557 AAAACACACAATTATGCAGATTGC 57.529 33.333 19.80 0.00 45.29 3.56
275 276 4.114058 ACACACAATTATGCAGATTGCC 57.886 40.909 19.80 0.00 44.23 4.52
276 277 3.765511 ACACACAATTATGCAGATTGCCT 59.234 39.130 19.80 7.34 44.23 4.75
277 278 4.221262 ACACACAATTATGCAGATTGCCTT 59.779 37.500 19.80 6.83 44.23 4.35
278 279 4.565166 CACACAATTATGCAGATTGCCTTG 59.435 41.667 19.80 14.83 44.23 3.61
279 280 4.221262 ACACAATTATGCAGATTGCCTTGT 59.779 37.500 19.80 15.29 44.23 3.16
280 281 5.172934 CACAATTATGCAGATTGCCTTGTT 58.827 37.500 19.80 3.13 44.23 2.83
281 282 5.640357 CACAATTATGCAGATTGCCTTGTTT 59.360 36.000 19.80 2.57 44.23 2.83
282 283 6.148150 CACAATTATGCAGATTGCCTTGTTTT 59.852 34.615 19.80 2.01 44.23 2.43
283 284 6.369615 ACAATTATGCAGATTGCCTTGTTTTC 59.630 34.615 19.80 0.00 44.23 2.29
284 285 5.465532 TTATGCAGATTGCCTTGTTTTCA 57.534 34.783 0.00 0.00 44.23 2.69
285 286 3.374220 TGCAGATTGCCTTGTTTTCAG 57.626 42.857 0.00 0.00 44.23 3.02
286 287 2.957680 TGCAGATTGCCTTGTTTTCAGA 59.042 40.909 0.00 0.00 44.23 3.27
287 288 3.384146 TGCAGATTGCCTTGTTTTCAGAA 59.616 39.130 0.00 0.00 44.23 3.02
288 289 4.141981 TGCAGATTGCCTTGTTTTCAGAAA 60.142 37.500 0.00 0.00 44.23 2.52
289 290 4.992951 GCAGATTGCCTTGTTTTCAGAAAT 59.007 37.500 0.00 0.00 37.42 2.17
290 291 5.107220 GCAGATTGCCTTGTTTTCAGAAATG 60.107 40.000 0.00 0.00 37.42 2.32
291 292 4.992951 AGATTGCCTTGTTTTCAGAAATGC 59.007 37.500 0.00 0.00 0.00 3.56
292 293 4.405116 TTGCCTTGTTTTCAGAAATGCT 57.595 36.364 0.00 0.00 0.00 3.79
293 294 4.405116 TGCCTTGTTTTCAGAAATGCTT 57.595 36.364 0.00 0.00 0.00 3.91
294 295 4.370917 TGCCTTGTTTTCAGAAATGCTTC 58.629 39.130 0.00 0.00 0.00 3.86
295 296 3.426525 GCCTTGTTTTCAGAAATGCTTCG 59.573 43.478 0.00 0.00 36.61 3.79
296 297 4.610945 CCTTGTTTTCAGAAATGCTTCGT 58.389 39.130 0.00 0.00 36.61 3.85
297 298 5.043248 CCTTGTTTTCAGAAATGCTTCGTT 58.957 37.500 0.00 0.00 36.61 3.85
298 299 5.519927 CCTTGTTTTCAGAAATGCTTCGTTT 59.480 36.000 0.00 0.00 36.61 3.60
299 300 6.035975 CCTTGTTTTCAGAAATGCTTCGTTTT 59.964 34.615 0.00 0.00 36.61 2.43
300 301 6.329838 TGTTTTCAGAAATGCTTCGTTTTG 57.670 33.333 0.00 0.00 36.61 2.44
301 302 5.190342 GTTTTCAGAAATGCTTCGTTTTGC 58.810 37.500 0.00 0.00 36.61 3.68
302 303 3.706802 TCAGAAATGCTTCGTTTTGCA 57.293 38.095 0.00 0.00 43.67 4.08
303 304 3.371168 TCAGAAATGCTTCGTTTTGCAC 58.629 40.909 0.00 0.00 42.26 4.57
304 305 3.114809 CAGAAATGCTTCGTTTTGCACA 58.885 40.909 0.00 0.00 42.26 4.57
305 306 3.737266 CAGAAATGCTTCGTTTTGCACAT 59.263 39.130 0.00 0.00 42.26 3.21
306 307 3.737266 AGAAATGCTTCGTTTTGCACATG 59.263 39.130 0.00 0.00 42.26 3.21
307 308 1.421382 ATGCTTCGTTTTGCACATGC 58.579 45.000 0.00 0.00 42.26 4.06
330 331 7.633361 GCAATTGCATTCCTATGTTCTTATG 57.367 36.000 25.36 0.00 41.59 1.90
331 332 6.643770 GCAATTGCATTCCTATGTTCTTATGG 59.356 38.462 25.36 0.00 41.59 2.74
332 333 7.685155 GCAATTGCATTCCTATGTTCTTATGGT 60.685 37.037 25.36 0.00 41.59 3.55
333 334 7.902920 ATTGCATTCCTATGTTCTTATGGTT 57.097 32.000 0.00 0.00 34.12 3.67
334 335 7.716799 TTGCATTCCTATGTTCTTATGGTTT 57.283 32.000 0.00 0.00 34.12 3.27
335 336 7.099266 TGCATTCCTATGTTCTTATGGTTTG 57.901 36.000 0.00 0.00 34.12 2.93
336 337 6.889177 TGCATTCCTATGTTCTTATGGTTTGA 59.111 34.615 0.00 0.00 34.12 2.69
337 338 7.395772 TGCATTCCTATGTTCTTATGGTTTGAA 59.604 33.333 0.00 0.00 34.12 2.69
338 339 7.917505 GCATTCCTATGTTCTTATGGTTTGAAG 59.082 37.037 0.00 0.00 34.12 3.02
339 340 9.177608 CATTCCTATGTTCTTATGGTTTGAAGA 57.822 33.333 0.00 0.00 0.00 2.87
340 341 9.927081 ATTCCTATGTTCTTATGGTTTGAAGAT 57.073 29.630 0.00 0.00 31.91 2.40
341 342 8.964476 TCCTATGTTCTTATGGTTTGAAGATC 57.036 34.615 0.00 0.00 31.91 2.75
342 343 7.993183 TCCTATGTTCTTATGGTTTGAAGATCC 59.007 37.037 0.00 0.00 31.91 3.36
343 344 7.229506 CCTATGTTCTTATGGTTTGAAGATCCC 59.770 40.741 0.00 0.00 31.91 3.85
344 345 5.886609 TGTTCTTATGGTTTGAAGATCCCA 58.113 37.500 0.00 0.00 31.91 4.37
345 346 5.710099 TGTTCTTATGGTTTGAAGATCCCAC 59.290 40.000 0.00 0.00 31.91 4.61
346 347 5.512942 TCTTATGGTTTGAAGATCCCACA 57.487 39.130 0.00 0.00 0.00 4.17
347 348 5.500234 TCTTATGGTTTGAAGATCCCACAG 58.500 41.667 0.00 0.00 0.00 3.66
348 349 5.250543 TCTTATGGTTTGAAGATCCCACAGA 59.749 40.000 0.00 0.00 0.00 3.41
349 350 4.598036 ATGGTTTGAAGATCCCACAGAT 57.402 40.909 0.00 0.00 38.17 2.90
372 373 0.701147 AGAGGCCCCTGAAGAAAAGG 59.299 55.000 0.00 0.00 34.31 3.11
374 375 1.286257 GAGGCCCCTGAAGAAAAGGAT 59.714 52.381 0.00 0.00 36.91 3.24
375 376 2.509964 GAGGCCCCTGAAGAAAAGGATA 59.490 50.000 0.00 0.00 36.91 2.59
376 377 2.242452 AGGCCCCTGAAGAAAAGGATAC 59.758 50.000 0.00 0.00 36.91 2.24
377 378 2.025321 GGCCCCTGAAGAAAAGGATACA 60.025 50.000 0.00 0.00 36.91 2.29
378 379 3.282885 GCCCCTGAAGAAAAGGATACAG 58.717 50.000 0.00 0.00 36.91 2.74
379 380 3.282885 CCCCTGAAGAAAAGGATACAGC 58.717 50.000 0.00 0.00 36.91 4.40
392 393 5.149973 AGGATACAGCAGATCACATGATC 57.850 43.478 13.05 13.05 45.26 2.92
409 410 2.573609 ATCGGGAGAGCCGAAAACGG 62.574 60.000 0.00 4.21 45.48 4.44
428 429 1.740296 CATCGTCCCAACCACCGTC 60.740 63.158 0.00 0.00 0.00 4.79
429 430 2.211410 ATCGTCCCAACCACCGTCA 61.211 57.895 0.00 0.00 0.00 4.35
430 431 1.550130 ATCGTCCCAACCACCGTCAT 61.550 55.000 0.00 0.00 0.00 3.06
431 432 2.032634 CGTCCCAACCACCGTCATG 61.033 63.158 0.00 0.00 0.00 3.07
432 433 1.072505 GTCCCAACCACCGTCATGT 59.927 57.895 0.00 0.00 0.00 3.21
433 434 1.072332 TCCCAACCACCGTCATGTG 59.928 57.895 0.00 0.00 35.98 3.21
434 435 1.228124 CCCAACCACCGTCATGTGT 60.228 57.895 0.00 0.00 34.35 3.72
441 444 1.332375 CCACCGTCATGTGTTTTTCGT 59.668 47.619 0.00 0.00 34.35 3.85
442 445 2.544686 CCACCGTCATGTGTTTTTCGTA 59.455 45.455 0.00 0.00 34.35 3.43
473 476 3.747099 AACTCGCAAGTACGTACGTAT 57.253 42.857 29.05 13.24 33.48 3.06
495 522 3.858812 TGTTTGCCGATACGTACATACAC 59.141 43.478 0.00 0.00 0.00 2.90
501 528 5.048573 TGCCGATACGTACATACACACATAT 60.049 40.000 0.00 0.00 0.00 1.78
502 529 5.510674 GCCGATACGTACATACACACATATC 59.489 44.000 0.00 0.00 0.00 1.63
503 530 6.025896 CCGATACGTACATACACACATATCC 58.974 44.000 0.00 0.00 0.00 2.59
504 531 6.128090 CCGATACGTACATACACACATATCCT 60.128 42.308 0.00 0.00 0.00 3.24
505 532 6.741358 CGATACGTACATACACACATATCCTG 59.259 42.308 0.00 0.00 0.00 3.86
506 533 5.196341 ACGTACATACACACATATCCTGG 57.804 43.478 0.00 0.00 0.00 4.45
508 535 4.982295 CGTACATACACACATATCCTGGTG 59.018 45.833 0.00 0.00 40.78 4.17
586 677 4.016706 GACCCCTCCACGGTGGTG 62.017 72.222 25.53 22.47 43.99 4.17
621 732 3.390521 CCACCTACCGCCAGCTCA 61.391 66.667 0.00 0.00 0.00 4.26
637 751 1.878953 CTCAAGCAAACCCTACACGT 58.121 50.000 0.00 0.00 0.00 4.49
653 767 4.026357 GTCCCTGTCCCCCTCCCT 62.026 72.222 0.00 0.00 0.00 4.20
662 776 2.705410 CCCCTCCCTGATCCTCCA 59.295 66.667 0.00 0.00 0.00 3.86
663 777 1.241327 CCCCTCCCTGATCCTCCAT 59.759 63.158 0.00 0.00 0.00 3.41
664 882 0.402566 CCCCTCCCTGATCCTCCATT 60.403 60.000 0.00 0.00 0.00 3.16
665 883 1.132397 CCCCTCCCTGATCCTCCATTA 60.132 57.143 0.00 0.00 0.00 1.90
671 889 2.370189 CCCTGATCCTCCATTACTCCAC 59.630 54.545 0.00 0.00 0.00 4.02
673 891 3.323403 CCTGATCCTCCATTACTCCACTC 59.677 52.174 0.00 0.00 0.00 3.51
675 893 2.940514 TCCTCCATTACTCCACTCCA 57.059 50.000 0.00 0.00 0.00 3.86
676 894 3.421394 TCCTCCATTACTCCACTCCAT 57.579 47.619 0.00 0.00 0.00 3.41
687 905 2.302445 CTCCACTCCATCATCATCCTCC 59.698 54.545 0.00 0.00 0.00 4.30
690 908 2.302445 CACTCCATCATCATCCTCCTCC 59.698 54.545 0.00 0.00 0.00 4.30
693 911 1.549620 CCATCATCATCCTCCTCCTCG 59.450 57.143 0.00 0.00 0.00 4.63
694 912 2.523245 CATCATCATCCTCCTCCTCGA 58.477 52.381 0.00 0.00 0.00 4.04
695 913 2.284754 TCATCATCCTCCTCCTCGAG 57.715 55.000 5.13 5.13 0.00 4.04
696 914 0.602562 CATCATCCTCCTCCTCGAGC 59.397 60.000 6.99 0.00 0.00 5.03
697 915 0.893270 ATCATCCTCCTCCTCGAGCG 60.893 60.000 6.99 0.19 0.00 5.03
698 916 1.527148 CATCCTCCTCCTCGAGCGA 60.527 63.158 6.99 5.16 0.00 4.93
699 917 1.228124 ATCCTCCTCCTCGAGCGAG 60.228 63.158 18.65 18.65 41.63 5.03
719 937 1.884579 GGCAGATTACAGCCATGATGG 59.115 52.381 7.21 7.21 45.97 3.51
728 946 2.154567 AGCCATGATGGTTGATTGCT 57.845 45.000 13.84 0.00 40.46 3.91
734 952 0.524816 GATGGTTGATTGCTGCAGCG 60.525 55.000 32.11 0.52 45.83 5.18
766 984 0.948678 GGTTAACGAGGCAAGTGCAA 59.051 50.000 5.52 0.00 44.36 4.08
829 1063 3.084786 GGCAGCTCACTTATTTCCAAGT 58.915 45.455 0.00 0.00 39.34 3.16
849 1083 2.116983 GAGCTCCCCACTGTCTGCAA 62.117 60.000 0.87 0.00 0.00 4.08
850 1084 1.673665 GCTCCCCACTGTCTGCAAG 60.674 63.158 0.00 0.00 0.00 4.01
860 1094 3.241530 TCTGCAAGACCACGGCCT 61.242 61.111 0.00 0.00 38.67 5.19
861 1095 2.743928 CTGCAAGACCACGGCCTC 60.744 66.667 0.00 0.00 34.07 4.70
862 1096 3.535629 CTGCAAGACCACGGCCTCA 62.536 63.158 0.00 0.00 34.07 3.86
863 1097 3.050275 GCAAGACCACGGCCTCAC 61.050 66.667 0.00 0.00 0.00 3.51
893 1127 4.716287 CCCCAATCCTCACCATAAACAATT 59.284 41.667 0.00 0.00 0.00 2.32
951 1185 3.695606 GGCGAGGTCACAGGCTCA 61.696 66.667 0.00 0.00 0.00 4.26
955 1189 2.601666 AGGTCACAGGCTCAGCGA 60.602 61.111 0.00 0.00 0.00 4.93
965 1208 2.657944 CTCAGCGAGCGCATCTCC 60.658 66.667 17.68 0.00 44.88 3.71
966 1209 4.212913 TCAGCGAGCGCATCTCCC 62.213 66.667 17.68 0.00 44.88 4.30
967 1210 4.218578 CAGCGAGCGCATCTCCCT 62.219 66.667 17.68 0.00 44.88 4.20
968 1211 3.910490 AGCGAGCGCATCTCCCTC 61.910 66.667 17.68 0.00 44.88 4.30
969 1212 3.910490 GCGAGCGCATCTCCCTCT 61.910 66.667 11.47 0.00 41.49 3.69
970 1213 2.027314 CGAGCGCATCTCCCTCTG 59.973 66.667 11.47 0.00 38.62 3.35
971 1214 2.280052 GAGCGCATCTCCCTCTGC 60.280 66.667 11.47 0.00 35.77 4.26
972 1215 2.763292 AGCGCATCTCCCTCTGCT 60.763 61.111 11.47 0.00 36.23 4.24
1117 1366 0.985490 ACCCTCCTCATCCTCCAAGC 60.985 60.000 0.00 0.00 0.00 4.01
1170 1419 4.475135 GCAGGAGGAGGGAACGGC 62.475 72.222 0.00 0.00 0.00 5.68
1171 1420 2.685380 CAGGAGGAGGGAACGGCT 60.685 66.667 0.00 0.00 0.00 5.52
1175 1424 2.685380 AGGAGGGAACGGCTCTGG 60.685 66.667 0.00 0.00 0.00 3.86
1868 2126 0.879765 GTGGAGGACGACGAAGAAGA 59.120 55.000 0.00 0.00 0.00 2.87
1992 2250 2.444140 ATCCCGCCTAGGAACGCT 60.444 61.111 14.75 0.00 45.00 5.07
2111 2369 2.824041 CGACAATGAAGGGGGCGG 60.824 66.667 0.00 0.00 0.00 6.13
2133 2391 1.406970 GCGGCGTCGAGAAAGAAGAG 61.407 60.000 16.53 0.00 39.00 2.85
2134 2392 0.798771 CGGCGTCGAGAAAGAAGAGG 60.799 60.000 1.44 0.00 39.00 3.69
2136 2394 1.468395 GGCGTCGAGAAAGAAGAGGAG 60.468 57.143 0.00 0.00 0.00 3.69
2139 2397 2.488545 CGTCGAGAAAGAAGAGGAGGAA 59.511 50.000 0.00 0.00 0.00 3.36
2174 2432 1.421268 TGTGGAGAAGGAATGTGCAGT 59.579 47.619 0.00 0.00 0.00 4.40
2273 2534 2.610859 AGGGGATGCCGGTCAAGT 60.611 61.111 1.90 0.00 0.00 3.16
2276 2537 2.351276 GGATGCCGGTCAAGTGGT 59.649 61.111 1.90 0.00 0.00 4.16
2286 2547 2.289072 CGGTCAAGTGGTGTCTGAAGAT 60.289 50.000 0.00 0.00 0.00 2.40
2321 2582 3.864789 TGGAGATATTGGGGAAGAAGC 57.135 47.619 0.00 0.00 0.00 3.86
2361 2622 1.412343 GGAGATGCAGAGGAGAAGGAC 59.588 57.143 0.00 0.00 0.00 3.85
2424 2685 0.475906 AGGTTGAAGCTGCCAAGAGT 59.524 50.000 0.00 0.00 0.00 3.24
2484 2745 0.822532 CCAAGGAGGATGCTGATGCC 60.823 60.000 0.00 0.00 36.28 4.40
2601 2865 1.071471 CACCAGGAGGCGTGTTTCT 59.929 57.895 0.00 0.00 39.06 2.52
2604 2868 0.736325 CCAGGAGGCGTGTTTCTACG 60.736 60.000 0.00 0.00 46.28 3.51
2628 2892 2.284258 AAGGCCTCCTCGAGCAGT 60.284 61.111 5.23 0.00 30.89 4.40
2903 3167 0.957888 GAGGAAGCCCAAGAGTGCAC 60.958 60.000 9.40 9.40 33.88 4.57
2933 3197 2.683211 AAGGAAGAGGCCACAAATGT 57.317 45.000 5.01 0.00 0.00 2.71
2953 3217 3.008375 TGTTGATGGTGAGGAAGAAGGAG 59.992 47.826 0.00 0.00 0.00 3.69
2959 3223 2.487265 GGTGAGGAAGAAGGAGCAACAA 60.487 50.000 0.00 0.00 0.00 2.83
2969 3233 1.067516 AGGAGCAACAACACAATGTGC 59.932 47.619 14.01 0.00 36.98 4.57
2970 3234 1.067516 GGAGCAACAACACAATGTGCT 59.932 47.619 14.01 3.14 39.04 4.40
2977 3241 5.730269 CAACAACACAATGTGCTGAAATTC 58.270 37.500 21.78 0.00 36.98 2.17
2985 3249 5.163530 ACAATGTGCTGAAATTCACACAGAA 60.164 36.000 24.14 10.91 44.74 3.02
2987 3251 3.947196 TGTGCTGAAATTCACACAGAAGT 59.053 39.130 19.63 0.00 40.15 3.01
3022 3286 2.236395 ACCGGAGTCGATGAGGAAAAAT 59.764 45.455 9.46 0.00 39.00 1.82
3023 3287 2.609459 CCGGAGTCGATGAGGAAAAATG 59.391 50.000 0.00 0.00 39.00 2.32
3024 3288 3.262420 CGGAGTCGATGAGGAAAAATGT 58.738 45.455 0.00 0.00 39.00 2.71
3029 3293 4.821805 AGTCGATGAGGAAAAATGTGTTGT 59.178 37.500 0.00 0.00 0.00 3.32
3081 3345 2.273449 CTGCCGGATTGCCTCCTT 59.727 61.111 5.05 0.00 42.47 3.36
3093 3357 2.854963 TGCCTCCTTATGATGATGTGC 58.145 47.619 0.00 0.00 0.00 4.57
3205 3469 1.144969 CCAACAAAATGCTGCTGCTG 58.855 50.000 17.00 8.89 40.48 4.41
3208 3472 1.740296 CAAAATGCTGCTGCTGCCC 60.740 57.895 25.44 4.84 40.48 5.36
3277 3562 2.863137 GCAAAGGATACAGAAGAGAGCG 59.137 50.000 0.00 0.00 41.41 5.03
3279 3564 2.065899 AGGATACAGAAGAGAGCGCT 57.934 50.000 11.27 11.27 41.41 5.92
3340 3625 4.659172 CTGCCCCGAAGCCACCAA 62.659 66.667 0.00 0.00 0.00 3.67
3353 3638 2.281761 ACCAACGAAGCCAGCAGG 60.282 61.111 0.00 0.00 38.23 4.85
3360 3645 3.574074 GAAGCCAGCAGGGGAGCAA 62.574 63.158 0.00 0.00 37.04 3.91
3390 3675 3.435186 GAGCTGCCAAAGGTCGCC 61.435 66.667 0.00 0.00 43.17 5.54
3462 3747 2.357517 CCTTTGCGGTCGTCTGCT 60.358 61.111 14.46 0.00 45.38 4.24
3551 3836 0.911769 TTCTGATCCCGGACAAGCAT 59.088 50.000 0.73 0.00 0.00 3.79
3564 3859 2.971598 AAGCATGCTGGTACGCCCT 61.972 57.895 23.48 0.00 0.00 5.19
3565 3860 3.204827 GCATGCTGGTACGCCCTG 61.205 66.667 11.37 0.00 35.34 4.45
3566 3861 2.514592 CATGCTGGTACGCCCTGG 60.515 66.667 0.00 0.00 32.93 4.45
3568 3863 2.602676 ATGCTGGTACGCCCTGGTT 61.603 57.895 0.00 0.00 32.93 3.67
3569 3864 2.033602 GCTGGTACGCCCTGGTTT 59.966 61.111 0.00 0.00 32.93 3.27
3570 3865 1.297364 GCTGGTACGCCCTGGTTTA 59.703 57.895 0.00 0.00 32.93 2.01
3571 3866 0.321830 GCTGGTACGCCCTGGTTTAA 60.322 55.000 0.00 0.00 32.93 1.52
3687 3982 4.135306 TGTTTTTCCATGCTTGGTACGTA 58.865 39.130 17.54 0.00 44.06 3.57
3688 3983 4.023878 TGTTTTTCCATGCTTGGTACGTAC 60.024 41.667 17.56 17.56 44.06 3.67
3689 3984 1.999048 TTCCATGCTTGGTACGTACG 58.001 50.000 18.98 15.01 44.06 3.67
3690 3985 0.889994 TCCATGCTTGGTACGTACGT 59.110 50.000 25.98 25.98 44.06 3.57
3707 4002 4.262277 CGTACGTGCTGTTAGTTATGTGAG 59.738 45.833 7.22 0.00 0.00 3.51
3710 4005 4.864806 ACGTGCTGTTAGTTATGTGAGATG 59.135 41.667 0.00 0.00 0.00 2.90
3711 4006 4.864806 CGTGCTGTTAGTTATGTGAGATGT 59.135 41.667 0.00 0.00 0.00 3.06
3712 4007 5.220284 CGTGCTGTTAGTTATGTGAGATGTG 60.220 44.000 0.00 0.00 0.00 3.21
3715 4010 5.521735 GCTGTTAGTTATGTGAGATGTGGAG 59.478 44.000 0.00 0.00 0.00 3.86
3716 4011 6.628175 GCTGTTAGTTATGTGAGATGTGGAGA 60.628 42.308 0.00 0.00 0.00 3.71
3717 4012 7.239763 TGTTAGTTATGTGAGATGTGGAGAA 57.760 36.000 0.00 0.00 0.00 2.87
3800 4098 6.469782 AAAAATCTCTGAGGTTTGCTTTGA 57.530 33.333 16.13 0.00 0.00 2.69
3807 4105 3.981211 TGAGGTTTGCTTTGATTTGCTC 58.019 40.909 0.00 0.00 0.00 4.26
3822 4120 0.038251 TGCTCTGTTCGGTGTGCTAG 60.038 55.000 0.00 0.00 0.00 3.42
3825 4126 2.329379 CTCTGTTCGGTGTGCTAGTTC 58.671 52.381 0.00 0.00 0.00 3.01
3834 4135 2.224793 GGTGTGCTAGTTCCCTTTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
3839 4140 4.454847 GTGCTAGTTCCCTTTTCCTGTTAC 59.545 45.833 0.00 0.00 0.00 2.50
3967 4274 7.757242 AGATAAGAAGGTTATCCTGTCCTTT 57.243 36.000 0.00 0.00 44.35 3.11
3990 4297 9.631452 CTTTAAGACAAGAAATGGAAATCCTTC 57.369 33.333 0.44 0.00 36.82 3.46
4007 4314 5.262588 TCCTTCTCTTTTCCTTGCAAAAC 57.737 39.130 0.00 0.00 0.00 2.43
4019 4327 1.631405 TGCAAAACCAATCTGGGAGG 58.369 50.000 0.00 0.00 43.37 4.30
4020 4328 0.247460 GCAAAACCAATCTGGGAGGC 59.753 55.000 0.00 0.00 43.37 4.70
4021 4329 1.631405 CAAAACCAATCTGGGAGGCA 58.369 50.000 0.00 0.00 43.37 4.75
4022 4330 1.547372 CAAAACCAATCTGGGAGGCAG 59.453 52.381 0.00 0.00 43.37 4.85
4058 4370 6.873076 TGCAATCATTCAGGTTAATGGTTTTC 59.127 34.615 0.00 0.00 37.95 2.29
4059 4371 6.873076 GCAATCATTCAGGTTAATGGTTTTCA 59.127 34.615 0.00 0.00 37.95 2.69
4086 4398 1.864082 GGTGCAAAAACCATGAAACCG 59.136 47.619 0.00 0.00 40.22 4.44
4106 4433 0.177604 GAGGAGGATCTGTGCCTGTG 59.822 60.000 0.00 0.00 35.44 3.66
4110 4437 0.322975 AGGATCTGTGCCTGTGTGAC 59.677 55.000 0.00 0.00 33.59 3.67
4111 4438 0.035317 GGATCTGTGCCTGTGTGACA 59.965 55.000 0.00 0.00 0.00 3.58
4118 4445 0.179076 TGCCTGTGTGACAGTGACAG 60.179 55.000 0.00 0.00 44.50 3.51
4143 4470 5.950883 TCAATTGTTTTGTTGGTTGTACGA 58.049 33.333 5.13 0.00 0.00 3.43
4144 4471 5.800941 TCAATTGTTTTGTTGGTTGTACGAC 59.199 36.000 5.13 4.50 0.00 4.34
4150 4477 1.000385 TGTTGGTTGTACGACGTAGGG 60.000 52.381 8.21 0.00 0.00 3.53
4157 4484 3.724508 TGTACGACGTAGGGTTTTTCA 57.275 42.857 8.21 0.00 0.00 2.69
4201 4581 4.068599 GCTATTAGATGAAGGGGAAGTGC 58.931 47.826 0.00 0.00 0.00 4.40
4202 4582 3.584733 ATTAGATGAAGGGGAAGTGCC 57.415 47.619 0.00 0.00 0.00 5.01
4203 4583 0.830648 TAGATGAAGGGGAAGTGCCG 59.169 55.000 0.00 0.00 37.63 5.69
4204 4584 0.909610 AGATGAAGGGGAAGTGCCGA 60.910 55.000 0.00 0.00 37.63 5.54
4205 4585 0.744771 GATGAAGGGGAAGTGCCGAC 60.745 60.000 0.00 0.00 37.63 4.79
4208 4589 0.831307 GAAGGGGAAGTGCCGACTAT 59.169 55.000 0.00 0.00 37.63 2.12
4221 4602 2.796032 GCCGACTATTGATGCCTTTTGC 60.796 50.000 0.00 0.00 41.77 3.68
4230 4611 2.137523 GATGCCTTTTGCTGTTGTTGG 58.862 47.619 0.00 0.00 42.00 3.77
4238 4619 0.033601 TGCTGTTGTTGGAACCTGGT 60.034 50.000 0.00 0.00 0.00 4.00
4246 4627 3.692690 TGTTGGAACCTGGTAATAAGCC 58.307 45.455 0.00 0.00 0.00 4.35
4249 4630 1.407712 GGAACCTGGTAATAAGCCGCA 60.408 52.381 0.00 0.00 0.00 5.69
4286 4667 1.681264 AGGTTTTTGGCTGTGTAGTGC 59.319 47.619 0.00 0.00 0.00 4.40
4326 4714 8.605746 GTGTACAGTACATACAAGAGAGTAGAG 58.394 40.741 16.57 0.00 41.34 2.43
4329 4717 7.176490 ACAGTACATACAAGAGAGTAGAGGTT 58.824 38.462 0.00 0.00 0.00 3.50
4330 4718 7.670559 ACAGTACATACAAGAGAGTAGAGGTTT 59.329 37.037 0.00 0.00 0.00 3.27
4331 4719 8.185505 CAGTACATACAAGAGAGTAGAGGTTTC 58.814 40.741 0.00 0.00 0.00 2.78
4332 4720 7.889073 AGTACATACAAGAGAGTAGAGGTTTCA 59.111 37.037 0.00 0.00 0.00 2.69
4333 4721 7.164230 ACATACAAGAGAGTAGAGGTTTCAG 57.836 40.000 0.00 0.00 0.00 3.02
4334 4722 6.722129 ACATACAAGAGAGTAGAGGTTTCAGT 59.278 38.462 0.00 0.00 0.00 3.41
4335 4723 5.461032 ACAAGAGAGTAGAGGTTTCAGTG 57.539 43.478 0.00 0.00 0.00 3.66
4336 4724 4.896482 ACAAGAGAGTAGAGGTTTCAGTGT 59.104 41.667 0.00 0.00 0.00 3.55
4337 4725 5.221342 ACAAGAGAGTAGAGGTTTCAGTGTG 60.221 44.000 0.00 0.00 0.00 3.82
4339 4727 4.896482 AGAGAGTAGAGGTTTCAGTGTGTT 59.104 41.667 0.00 0.00 0.00 3.32
4340 4728 4.950050 AGAGTAGAGGTTTCAGTGTGTTG 58.050 43.478 0.00 0.00 0.00 3.33
4342 4730 1.680338 AGAGGTTTCAGTGTGTTGCC 58.320 50.000 0.00 0.00 0.00 4.52
4343 4731 1.064758 AGAGGTTTCAGTGTGTTGCCA 60.065 47.619 0.00 0.00 0.00 4.92
4344 4732 1.334869 GAGGTTTCAGTGTGTTGCCAG 59.665 52.381 0.00 0.00 0.00 4.85
4345 4733 0.249031 GGTTTCAGTGTGTTGCCAGC 60.249 55.000 0.00 0.00 0.00 4.85
4367 4768 2.380084 AATAACATGCGTCCTCGTGT 57.620 45.000 0.00 0.00 39.49 4.49
4379 4780 0.580104 CCTCGTGTTGACCGAACAAC 59.420 55.000 14.49 14.49 46.30 3.32
4402 4803 0.956633 ATGTTGTCACCAGCTTGCTG 59.043 50.000 15.02 15.02 0.00 4.41
4409 4810 1.350684 TCACCAGCTTGCTGTCCATAA 59.649 47.619 19.49 0.00 0.00 1.90
4411 4812 3.199727 TCACCAGCTTGCTGTCCATAATA 59.800 43.478 19.49 0.00 0.00 0.98
4416 4817 4.877823 CAGCTTGCTGTCCATAATAGAACA 59.122 41.667 13.89 0.00 0.00 3.18
4418 4819 4.878397 GCTTGCTGTCCATAATAGAACAGT 59.122 41.667 0.00 0.00 40.92 3.55
4421 4822 6.741992 TGCTGTCCATAATAGAACAGTTTG 57.258 37.500 0.00 0.00 40.92 2.93
4422 4823 5.123820 TGCTGTCCATAATAGAACAGTTTGC 59.876 40.000 0.00 0.00 40.92 3.68
4423 4824 5.123820 GCTGTCCATAATAGAACAGTTTGCA 59.876 40.000 0.00 0.00 40.92 4.08
4424 4825 6.494893 TGTCCATAATAGAACAGTTTGCAC 57.505 37.500 0.00 0.00 0.00 4.57
4425 4826 6.237901 TGTCCATAATAGAACAGTTTGCACT 58.762 36.000 0.00 0.00 0.00 4.40
4426 4827 7.390823 TGTCCATAATAGAACAGTTTGCACTA 58.609 34.615 0.00 0.00 0.00 2.74
4427 4828 7.549134 TGTCCATAATAGAACAGTTTGCACTAG 59.451 37.037 0.00 0.00 0.00 2.57
4428 4829 7.549488 GTCCATAATAGAACAGTTTGCACTAGT 59.451 37.037 0.00 0.00 0.00 2.57
4429 4830 8.755028 TCCATAATAGAACAGTTTGCACTAGTA 58.245 33.333 0.00 0.00 0.00 1.82
4437 4838 8.827677 AGAACAGTTTGCACTAGTAAAGTTAAG 58.172 33.333 0.00 0.00 35.76 1.85
4456 4863 6.717084 AGTTAAGCTGAGTAAAGAAATTGCCT 59.283 34.615 0.00 0.00 0.00 4.75
4464 4871 2.859165 AAGAAATTGCCTCGAGTGGA 57.141 45.000 12.31 1.07 0.00 4.02
4469 4876 0.107017 ATTGCCTCGAGTGGATTGGG 60.107 55.000 12.31 0.00 0.00 4.12
4477 4884 1.001641 AGTGGATTGGGTCTGCTGC 60.002 57.895 0.00 0.00 0.00 5.25
4484 4891 4.719106 GGGTCTGCTGCTGCTGCT 62.719 66.667 27.67 0.00 40.48 4.24
4494 4901 2.794621 CTGCTGCTGCTGCTGATG 59.205 61.111 27.67 13.98 40.01 3.07
4495 4902 1.745489 CTGCTGCTGCTGCTGATGA 60.745 57.895 27.67 10.07 40.01 2.92
4496 4903 1.077716 TGCTGCTGCTGCTGATGAT 60.078 52.632 27.67 0.00 40.01 2.45
4497 4904 1.356979 GCTGCTGCTGCTGATGATG 59.643 57.895 23.39 4.47 40.01 3.07
4498 4905 1.095807 GCTGCTGCTGCTGATGATGA 61.096 55.000 23.39 0.00 40.01 2.92
4499 4906 1.598882 CTGCTGCTGCTGATGATGAT 58.401 50.000 17.00 0.00 40.01 2.45
4500 4907 1.265365 CTGCTGCTGCTGATGATGATG 59.735 52.381 17.00 0.00 40.01 3.07
4501 4908 1.134220 TGCTGCTGCTGATGATGATGA 60.134 47.619 17.00 0.00 40.48 2.92
4502 4909 2.155279 GCTGCTGCTGATGATGATGAT 58.845 47.619 10.92 0.00 36.03 2.45
4503 4910 2.160615 GCTGCTGCTGATGATGATGATC 59.839 50.000 10.92 0.00 36.03 2.92
4504 4911 3.669536 CTGCTGCTGATGATGATGATCT 58.330 45.455 0.00 0.00 0.00 2.75
4505 4912 4.068599 CTGCTGCTGATGATGATGATCTT 58.931 43.478 0.00 0.00 0.00 2.40
4506 4913 4.461198 TGCTGCTGATGATGATGATCTTT 58.539 39.130 0.00 0.00 0.00 2.52
4507 4914 4.887655 TGCTGCTGATGATGATGATCTTTT 59.112 37.500 0.00 0.00 0.00 2.27
4508 4915 5.008712 TGCTGCTGATGATGATGATCTTTTC 59.991 40.000 0.00 0.00 0.00 2.29
4509 4916 5.008712 GCTGCTGATGATGATGATCTTTTCA 59.991 40.000 0.00 0.00 39.12 2.69
4510 4917 6.459710 GCTGCTGATGATGATGATCTTTTCAA 60.460 38.462 0.00 0.00 38.03 2.69
4511 4918 7.582667 TGCTGATGATGATGATCTTTTCAAT 57.417 32.000 0.00 0.00 38.03 2.57
4512 4919 8.007405 TGCTGATGATGATGATCTTTTCAATT 57.993 30.769 0.00 0.00 38.03 2.32
4513 4920 8.474831 TGCTGATGATGATGATCTTTTCAATTT 58.525 29.630 0.00 0.00 38.03 1.82
4514 4921 9.961265 GCTGATGATGATGATCTTTTCAATTTA 57.039 29.630 0.00 0.00 38.03 1.40
4529 4936 5.635417 TCAATTTATGAATGGTTGCACGA 57.365 34.783 0.00 0.00 34.30 4.35
4530 4937 6.206395 TCAATTTATGAATGGTTGCACGAT 57.794 33.333 0.00 0.00 34.30 3.73
4531 4938 6.629128 TCAATTTATGAATGGTTGCACGATT 58.371 32.000 0.00 0.00 34.30 3.34
4532 4939 6.530887 TCAATTTATGAATGGTTGCACGATTG 59.469 34.615 0.00 0.00 34.30 2.67
4533 4940 5.384063 TTTATGAATGGTTGCACGATTGT 57.616 34.783 0.00 0.00 0.00 2.71
4534 4941 3.940209 ATGAATGGTTGCACGATTGTT 57.060 38.095 0.00 0.00 0.00 2.83
4535 4942 3.724508 TGAATGGTTGCACGATTGTTT 57.275 38.095 0.00 0.00 0.00 2.83
4536 4943 3.637432 TGAATGGTTGCACGATTGTTTC 58.363 40.909 0.00 0.00 0.00 2.78
4537 4944 3.067320 TGAATGGTTGCACGATTGTTTCA 59.933 39.130 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.289010 CCAAGAAATTTGGTGGCCTCAC 60.289 50.000 3.32 0.00 42.91 3.51
4 5 1.969923 CCAAGAAATTTGGTGGCCTCA 59.030 47.619 3.32 0.00 34.92 3.86
5 6 2.749280 CCAAGAAATTTGGTGGCCTC 57.251 50.000 3.32 0.00 34.92 4.70
12 13 0.318614 ACGCGCACCAAGAAATTTGG 60.319 50.000 5.73 4.45 44.91 3.28
13 14 0.777631 CACGCGCACCAAGAAATTTG 59.222 50.000 5.73 0.00 0.00 2.32
14 15 0.318614 CCACGCGCACCAAGAAATTT 60.319 50.000 5.73 0.00 0.00 1.82
15 16 1.285641 CCACGCGCACCAAGAAATT 59.714 52.632 5.73 0.00 0.00 1.82
16 17 2.953821 CCACGCGCACCAAGAAAT 59.046 55.556 5.73 0.00 0.00 2.17
17 18 3.959975 GCCACGCGCACCAAGAAA 61.960 61.111 5.73 0.00 37.47 2.52
36 37 4.758251 TGATGTGCCCTGACCGCG 62.758 66.667 0.00 0.00 0.00 6.46
37 38 2.124570 ATGATGTGCCCTGACCGC 60.125 61.111 0.00 0.00 0.00 5.68
38 39 0.392863 TTGATGATGTGCCCTGACCG 60.393 55.000 0.00 0.00 0.00 4.79
39 40 1.952296 GATTGATGATGTGCCCTGACC 59.048 52.381 0.00 0.00 0.00 4.02
40 41 2.928334 AGATTGATGATGTGCCCTGAC 58.072 47.619 0.00 0.00 0.00 3.51
41 42 3.284617 CAAGATTGATGATGTGCCCTGA 58.715 45.455 0.00 0.00 0.00 3.86
42 43 3.021695 ACAAGATTGATGATGTGCCCTG 58.978 45.455 0.00 0.00 0.00 4.45
43 44 3.377253 ACAAGATTGATGATGTGCCCT 57.623 42.857 0.00 0.00 0.00 5.19
44 45 4.641989 ACTTACAAGATTGATGATGTGCCC 59.358 41.667 0.00 0.00 0.00 5.36
45 46 5.824904 ACTTACAAGATTGATGATGTGCC 57.175 39.130 0.00 0.00 0.00 5.01
46 47 6.017605 CCCTACTTACAAGATTGATGATGTGC 60.018 42.308 0.00 0.00 0.00 4.57
47 48 7.011763 CACCCTACTTACAAGATTGATGATGTG 59.988 40.741 0.00 0.00 0.00 3.21
48 49 7.050377 CACCCTACTTACAAGATTGATGATGT 58.950 38.462 0.00 0.00 0.00 3.06
49 50 7.275183 TCACCCTACTTACAAGATTGATGATG 58.725 38.462 0.00 0.00 0.00 3.07
50 51 7.437713 TCACCCTACTTACAAGATTGATGAT 57.562 36.000 0.00 0.00 0.00 2.45
51 52 6.867519 TCACCCTACTTACAAGATTGATGA 57.132 37.500 0.00 0.00 0.00 2.92
52 53 9.784531 AATATCACCCTACTTACAAGATTGATG 57.215 33.333 0.00 0.00 0.00 3.07
81 82 6.864342 TCCAAAATCACCGTTTAGACAAAAA 58.136 32.000 0.00 0.00 0.00 1.94
82 83 6.452494 TCCAAAATCACCGTTTAGACAAAA 57.548 33.333 0.00 0.00 0.00 2.44
83 84 6.642707 ATCCAAAATCACCGTTTAGACAAA 57.357 33.333 0.00 0.00 0.00 2.83
84 85 6.263392 TCAATCCAAAATCACCGTTTAGACAA 59.737 34.615 0.00 0.00 0.00 3.18
85 86 5.765677 TCAATCCAAAATCACCGTTTAGACA 59.234 36.000 0.00 0.00 0.00 3.41
86 87 6.249035 TCAATCCAAAATCACCGTTTAGAC 57.751 37.500 0.00 0.00 0.00 2.59
87 88 6.884295 AGATCAATCCAAAATCACCGTTTAGA 59.116 34.615 0.00 0.00 0.00 2.10
88 89 7.088589 AGATCAATCCAAAATCACCGTTTAG 57.911 36.000 0.00 0.00 0.00 1.85
89 90 8.620416 CATAGATCAATCCAAAATCACCGTTTA 58.380 33.333 0.00 0.00 0.00 2.01
90 91 5.982890 AGATCAATCCAAAATCACCGTTT 57.017 34.783 0.00 0.00 0.00 3.60
91 92 6.603201 ACATAGATCAATCCAAAATCACCGTT 59.397 34.615 0.00 0.00 0.00 4.44
92 93 6.122277 ACATAGATCAATCCAAAATCACCGT 58.878 36.000 0.00 0.00 0.00 4.83
93 94 6.624352 ACATAGATCAATCCAAAATCACCG 57.376 37.500 0.00 0.00 0.00 4.94
122 123 9.554724 GCATTATTCGACAAAGATCTTACAAAA 57.445 29.630 8.75 0.90 0.00 2.44
123 124 8.726068 TGCATTATTCGACAAAGATCTTACAAA 58.274 29.630 8.75 0.20 0.00 2.83
124 125 8.262715 TGCATTATTCGACAAAGATCTTACAA 57.737 30.769 8.75 0.00 0.00 2.41
125 126 7.841915 TGCATTATTCGACAAAGATCTTACA 57.158 32.000 8.75 0.00 0.00 2.41
126 127 9.722056 AATTGCATTATTCGACAAAGATCTTAC 57.278 29.630 8.75 3.02 0.00 2.34
129 130 9.941664 CTTAATTGCATTATTCGACAAAGATCT 57.058 29.630 0.00 0.00 0.00 2.75
130 131 9.935682 TCTTAATTGCATTATTCGACAAAGATC 57.064 29.630 0.00 0.00 0.00 2.75
132 133 9.720667 CATCTTAATTGCATTATTCGACAAAGA 57.279 29.630 0.00 0.00 0.00 2.52
133 134 8.961092 CCATCTTAATTGCATTATTCGACAAAG 58.039 33.333 0.00 0.00 0.00 2.77
134 135 8.465999 ACCATCTTAATTGCATTATTCGACAAA 58.534 29.630 0.00 0.00 0.00 2.83
135 136 7.995289 ACCATCTTAATTGCATTATTCGACAA 58.005 30.769 0.00 0.00 0.00 3.18
136 137 7.566760 ACCATCTTAATTGCATTATTCGACA 57.433 32.000 0.00 0.00 0.00 4.35
137 138 7.915397 ACAACCATCTTAATTGCATTATTCGAC 59.085 33.333 0.00 0.00 0.00 4.20
138 139 7.995289 ACAACCATCTTAATTGCATTATTCGA 58.005 30.769 0.00 0.00 0.00 3.71
139 140 9.897744 ATACAACCATCTTAATTGCATTATTCG 57.102 29.630 0.00 0.00 0.00 3.34
141 142 9.480053 GCATACAACCATCTTAATTGCATTATT 57.520 29.630 0.00 0.00 0.00 1.40
142 143 8.640651 TGCATACAACCATCTTAATTGCATTAT 58.359 29.630 0.00 0.00 33.09 1.28
143 144 8.005192 TGCATACAACCATCTTAATTGCATTA 57.995 30.769 0.00 0.00 33.09 1.90
144 145 6.876155 TGCATACAACCATCTTAATTGCATT 58.124 32.000 0.00 0.00 33.09 3.56
145 146 6.468333 TGCATACAACCATCTTAATTGCAT 57.532 33.333 0.00 0.00 33.09 3.96
146 147 5.911378 TGCATACAACCATCTTAATTGCA 57.089 34.783 0.00 0.00 35.42 4.08
147 148 5.626543 CGATGCATACAACCATCTTAATTGC 59.373 40.000 0.00 0.00 36.55 3.56
148 149 5.626543 GCGATGCATACAACCATCTTAATTG 59.373 40.000 0.00 0.00 36.55 2.32
149 150 5.532406 AGCGATGCATACAACCATCTTAATT 59.468 36.000 0.00 0.00 36.55 1.40
150 151 5.065914 AGCGATGCATACAACCATCTTAAT 58.934 37.500 0.00 0.00 36.55 1.40
151 152 4.450976 AGCGATGCATACAACCATCTTAA 58.549 39.130 0.00 0.00 36.55 1.85
152 153 4.058124 GAGCGATGCATACAACCATCTTA 58.942 43.478 0.00 0.00 36.55 2.10
153 154 2.874701 GAGCGATGCATACAACCATCTT 59.125 45.455 0.00 0.00 36.55 2.40
154 155 2.487934 GAGCGATGCATACAACCATCT 58.512 47.619 0.00 0.00 36.55 2.90
155 156 1.193203 CGAGCGATGCATACAACCATC 59.807 52.381 0.00 0.00 35.61 3.51
156 157 1.202521 TCGAGCGATGCATACAACCAT 60.203 47.619 0.00 0.00 0.00 3.55
157 158 0.174617 TCGAGCGATGCATACAACCA 59.825 50.000 0.00 0.00 0.00 3.67
158 159 1.502231 ATCGAGCGATGCATACAACC 58.498 50.000 0.00 0.00 32.98 3.77
159 160 2.539688 TGAATCGAGCGATGCATACAAC 59.460 45.455 9.39 0.00 35.38 3.32
160 161 2.796593 CTGAATCGAGCGATGCATACAA 59.203 45.455 13.48 0.00 39.27 2.41
161 162 2.034558 TCTGAATCGAGCGATGCATACA 59.965 45.455 13.48 5.70 39.27 2.29
162 163 2.660715 CTCTGAATCGAGCGATGCATAC 59.339 50.000 13.48 0.00 39.27 2.39
163 164 2.554032 TCTCTGAATCGAGCGATGCATA 59.446 45.455 13.48 6.41 39.27 3.14
164 165 1.339291 TCTCTGAATCGAGCGATGCAT 59.661 47.619 13.48 0.00 39.27 3.96
165 166 0.740737 TCTCTGAATCGAGCGATGCA 59.259 50.000 12.58 12.58 37.81 3.96
166 167 1.127701 GTCTCTGAATCGAGCGATGC 58.872 55.000 6.11 4.96 34.70 3.91
167 168 1.764851 GGTCTCTGAATCGAGCGATG 58.235 55.000 6.11 0.00 34.70 3.84
170 171 1.298713 CCGGTCTCTGAATCGAGCG 60.299 63.158 9.24 9.24 46.95 5.03
171 172 1.066587 CCCGGTCTCTGAATCGAGC 59.933 63.158 0.00 0.00 0.00 5.03
172 173 1.038130 ACCCCGGTCTCTGAATCGAG 61.038 60.000 0.00 0.00 0.00 4.04
173 174 0.256752 TACCCCGGTCTCTGAATCGA 59.743 55.000 0.00 0.00 0.00 3.59
174 175 1.108776 TTACCCCGGTCTCTGAATCG 58.891 55.000 0.00 0.00 0.00 3.34
175 176 3.494573 GGATTTACCCCGGTCTCTGAATC 60.495 52.174 0.00 2.58 0.00 2.52
176 177 2.438392 GGATTTACCCCGGTCTCTGAAT 59.562 50.000 0.00 0.00 0.00 2.57
177 178 1.835531 GGATTTACCCCGGTCTCTGAA 59.164 52.381 0.00 0.00 0.00 3.02
178 179 1.007963 AGGATTTACCCCGGTCTCTGA 59.992 52.381 0.00 0.00 40.05 3.27
179 180 1.413077 GAGGATTTACCCCGGTCTCTG 59.587 57.143 0.00 0.00 40.05 3.35
180 181 1.691801 GGAGGATTTACCCCGGTCTCT 60.692 57.143 0.00 0.00 40.05 3.10
181 182 0.757512 GGAGGATTTACCCCGGTCTC 59.242 60.000 0.00 0.00 40.05 3.36
182 183 0.342313 AGGAGGATTTACCCCGGTCT 59.658 55.000 0.00 0.00 40.05 3.85
183 184 1.134189 CAAGGAGGATTTACCCCGGTC 60.134 57.143 0.00 0.00 40.05 4.79
184 185 0.916809 CAAGGAGGATTTACCCCGGT 59.083 55.000 0.00 0.00 40.05 5.28
185 186 1.209621 TCAAGGAGGATTTACCCCGG 58.790 55.000 0.00 0.00 40.05 5.73
186 187 3.359695 TTTCAAGGAGGATTTACCCCG 57.640 47.619 0.00 0.00 40.05 5.73
208 209 7.569240 AGACATAGGAATCCGAAGAGATTTTT 58.431 34.615 0.00 0.00 36.60 1.94
209 210 7.130681 AGACATAGGAATCCGAAGAGATTTT 57.869 36.000 0.00 0.00 36.60 1.82
210 211 6.739331 AGACATAGGAATCCGAAGAGATTT 57.261 37.500 0.00 0.00 36.60 2.17
211 212 6.553100 AGAAGACATAGGAATCCGAAGAGATT 59.447 38.462 0.00 0.00 39.19 2.40
212 213 6.074648 AGAAGACATAGGAATCCGAAGAGAT 58.925 40.000 0.00 0.00 0.00 2.75
213 214 5.450453 AGAAGACATAGGAATCCGAAGAGA 58.550 41.667 0.00 0.00 0.00 3.10
214 215 5.534654 AGAGAAGACATAGGAATCCGAAGAG 59.465 44.000 0.00 0.00 0.00 2.85
215 216 5.450453 AGAGAAGACATAGGAATCCGAAGA 58.550 41.667 0.00 0.00 0.00 2.87
216 217 5.534654 AGAGAGAAGACATAGGAATCCGAAG 59.465 44.000 0.00 0.00 0.00 3.79
217 218 5.450453 AGAGAGAAGACATAGGAATCCGAA 58.550 41.667 0.00 0.00 0.00 4.30
218 219 5.055265 AGAGAGAAGACATAGGAATCCGA 57.945 43.478 0.00 0.00 0.00 4.55
219 220 5.068460 ACAAGAGAGAAGACATAGGAATCCG 59.932 44.000 0.00 0.00 0.00 4.18
220 221 6.478512 ACAAGAGAGAAGACATAGGAATCC 57.521 41.667 0.00 0.00 0.00 3.01
221 222 6.205784 CGACAAGAGAGAAGACATAGGAATC 58.794 44.000 0.00 0.00 0.00 2.52
222 223 5.451242 GCGACAAGAGAGAAGACATAGGAAT 60.451 44.000 0.00 0.00 0.00 3.01
223 224 4.142359 GCGACAAGAGAGAAGACATAGGAA 60.142 45.833 0.00 0.00 0.00 3.36
224 225 3.378742 GCGACAAGAGAGAAGACATAGGA 59.621 47.826 0.00 0.00 0.00 2.94
225 226 3.701241 GCGACAAGAGAGAAGACATAGG 58.299 50.000 0.00 0.00 0.00 2.57
226 227 3.064134 TCGCGACAAGAGAGAAGACATAG 59.936 47.826 3.71 0.00 0.00 2.23
227 228 3.007635 TCGCGACAAGAGAGAAGACATA 58.992 45.455 3.71 0.00 0.00 2.29
228 229 1.813178 TCGCGACAAGAGAGAAGACAT 59.187 47.619 3.71 0.00 0.00 3.06
229 230 1.235724 TCGCGACAAGAGAGAAGACA 58.764 50.000 3.71 0.00 0.00 3.41
230 231 2.333389 TTCGCGACAAGAGAGAAGAC 57.667 50.000 9.15 0.00 0.00 3.01
231 232 4.696899 TTATTCGCGACAAGAGAGAAGA 57.303 40.909 9.15 0.00 0.00 2.87
232 233 5.118664 TGTTTTATTCGCGACAAGAGAGAAG 59.881 40.000 9.15 0.00 0.00 2.85
233 234 4.986034 TGTTTTATTCGCGACAAGAGAGAA 59.014 37.500 9.15 0.00 0.00 2.87
234 235 4.384846 GTGTTTTATTCGCGACAAGAGAGA 59.615 41.667 9.15 0.00 0.00 3.10
235 236 4.149922 TGTGTTTTATTCGCGACAAGAGAG 59.850 41.667 9.15 0.00 0.00 3.20
236 237 4.052608 TGTGTTTTATTCGCGACAAGAGA 58.947 39.130 9.15 0.00 0.00 3.10
237 238 4.141680 GTGTGTTTTATTCGCGACAAGAG 58.858 43.478 9.15 0.00 0.00 2.85
238 239 3.556365 TGTGTGTTTTATTCGCGACAAGA 59.444 39.130 9.15 0.00 0.00 3.02
239 240 3.867665 TGTGTGTTTTATTCGCGACAAG 58.132 40.909 9.15 0.00 0.00 3.16
240 241 3.946308 TGTGTGTTTTATTCGCGACAA 57.054 38.095 9.15 2.64 0.00 3.18
241 242 3.946308 TTGTGTGTTTTATTCGCGACA 57.054 38.095 9.15 0.00 0.00 4.35
242 243 6.504180 GCATAATTGTGTGTTTTATTCGCGAC 60.504 38.462 9.15 0.00 0.00 5.19
243 244 5.509972 GCATAATTGTGTGTTTTATTCGCGA 59.490 36.000 3.71 3.71 0.00 5.87
244 245 5.284897 TGCATAATTGTGTGTTTTATTCGCG 59.715 36.000 0.00 0.00 0.00 5.87
245 246 6.526325 TCTGCATAATTGTGTGTTTTATTCGC 59.474 34.615 4.00 0.00 0.00 4.70
246 247 8.619146 ATCTGCATAATTGTGTGTTTTATTCG 57.381 30.769 4.00 0.00 0.00 3.34
248 249 8.658609 GCAATCTGCATAATTGTGTGTTTTATT 58.341 29.630 18.12 0.00 44.26 1.40
249 250 8.188531 GCAATCTGCATAATTGTGTGTTTTAT 57.811 30.769 18.12 0.00 44.26 1.40
250 251 7.579589 GCAATCTGCATAATTGTGTGTTTTA 57.420 32.000 18.12 0.00 44.26 1.52
251 252 6.470557 GCAATCTGCATAATTGTGTGTTTT 57.529 33.333 18.12 0.00 44.26 2.43
266 267 3.648339 TCTGAAAACAAGGCAATCTGC 57.352 42.857 0.00 0.00 44.08 4.26
267 268 5.107220 GCATTTCTGAAAACAAGGCAATCTG 60.107 40.000 6.95 0.00 0.00 2.90
268 269 4.992951 GCATTTCTGAAAACAAGGCAATCT 59.007 37.500 6.95 0.00 0.00 2.40
269 270 4.992951 AGCATTTCTGAAAACAAGGCAATC 59.007 37.500 6.95 0.00 0.00 2.67
270 271 4.964593 AGCATTTCTGAAAACAAGGCAAT 58.035 34.783 6.95 0.00 0.00 3.56
271 272 4.405116 AGCATTTCTGAAAACAAGGCAA 57.595 36.364 6.95 0.00 0.00 4.52
272 273 4.370917 GAAGCATTTCTGAAAACAAGGCA 58.629 39.130 6.95 0.00 0.00 4.75
273 274 3.426525 CGAAGCATTTCTGAAAACAAGGC 59.573 43.478 6.95 6.48 0.00 4.35
274 275 4.610945 ACGAAGCATTTCTGAAAACAAGG 58.389 39.130 6.95 0.00 0.00 3.61
275 276 6.573617 AAACGAAGCATTTCTGAAAACAAG 57.426 33.333 6.95 0.00 0.00 3.16
276 277 6.671879 GCAAAACGAAGCATTTCTGAAAACAA 60.672 34.615 6.95 0.00 0.00 2.83
277 278 5.220378 GCAAAACGAAGCATTTCTGAAAACA 60.220 36.000 6.95 0.00 0.00 2.83
278 279 5.190342 GCAAAACGAAGCATTTCTGAAAAC 58.810 37.500 6.95 2.89 0.00 2.43
279 280 4.867047 TGCAAAACGAAGCATTTCTGAAAA 59.133 33.333 6.95 0.00 35.51 2.29
280 281 4.267452 GTGCAAAACGAAGCATTTCTGAAA 59.733 37.500 5.15 5.15 43.44 2.69
281 282 3.796178 GTGCAAAACGAAGCATTTCTGAA 59.204 39.130 0.00 0.00 43.44 3.02
282 283 3.181492 TGTGCAAAACGAAGCATTTCTGA 60.181 39.130 0.00 0.00 43.44 3.27
283 284 3.114809 TGTGCAAAACGAAGCATTTCTG 58.885 40.909 0.00 0.00 43.44 3.02
284 285 3.435105 TGTGCAAAACGAAGCATTTCT 57.565 38.095 0.00 0.00 43.44 2.52
285 286 3.662454 GCATGTGCAAAACGAAGCATTTC 60.662 43.478 0.00 0.00 43.44 2.17
286 287 2.221517 GCATGTGCAAAACGAAGCATTT 59.778 40.909 0.00 0.00 43.44 2.32
287 288 1.794116 GCATGTGCAAAACGAAGCATT 59.206 42.857 0.00 0.00 43.44 3.56
288 289 1.421382 GCATGTGCAAAACGAAGCAT 58.579 45.000 0.00 0.00 43.44 3.79
289 290 2.884146 GCATGTGCAAAACGAAGCA 58.116 47.368 0.00 0.00 41.59 3.91
306 307 6.643770 CCATAAGAACATAGGAATGCAATTGC 59.356 38.462 23.69 23.69 45.95 3.56
307 308 7.719483 ACCATAAGAACATAGGAATGCAATTG 58.281 34.615 0.00 0.00 36.07 2.32
308 309 7.902920 ACCATAAGAACATAGGAATGCAATT 57.097 32.000 0.00 0.00 40.93 2.32
309 310 7.902920 AACCATAAGAACATAGGAATGCAAT 57.097 32.000 0.00 0.00 36.50 3.56
310 311 7.395772 TCAAACCATAAGAACATAGGAATGCAA 59.604 33.333 0.00 0.00 36.50 4.08
311 312 6.889177 TCAAACCATAAGAACATAGGAATGCA 59.111 34.615 0.00 0.00 36.50 3.96
312 313 7.333528 TCAAACCATAAGAACATAGGAATGC 57.666 36.000 0.00 0.00 36.50 3.56
313 314 9.177608 TCTTCAAACCATAAGAACATAGGAATG 57.822 33.333 0.00 0.00 39.17 2.67
314 315 9.927081 ATCTTCAAACCATAAGAACATAGGAAT 57.073 29.630 0.00 0.00 35.47 3.01
315 316 9.396022 GATCTTCAAACCATAAGAACATAGGAA 57.604 33.333 0.00 0.00 35.47 3.36
316 317 7.993183 GGATCTTCAAACCATAAGAACATAGGA 59.007 37.037 0.00 0.00 35.47 2.94
317 318 7.229506 GGGATCTTCAAACCATAAGAACATAGG 59.770 40.741 0.00 0.00 35.47 2.57
318 319 7.775093 TGGGATCTTCAAACCATAAGAACATAG 59.225 37.037 0.00 0.00 35.47 2.23
319 320 7.556275 GTGGGATCTTCAAACCATAAGAACATA 59.444 37.037 0.00 0.00 35.47 2.29
320 321 6.378280 GTGGGATCTTCAAACCATAAGAACAT 59.622 38.462 0.00 0.00 35.47 2.71
321 322 5.710099 GTGGGATCTTCAAACCATAAGAACA 59.290 40.000 0.00 0.00 35.47 3.18
322 323 5.710099 TGTGGGATCTTCAAACCATAAGAAC 59.290 40.000 0.00 0.00 35.47 3.01
323 324 5.886609 TGTGGGATCTTCAAACCATAAGAA 58.113 37.500 0.00 0.00 35.47 2.52
324 325 5.250543 TCTGTGGGATCTTCAAACCATAAGA 59.749 40.000 0.00 0.00 36.24 2.10
325 326 5.500234 TCTGTGGGATCTTCAAACCATAAG 58.500 41.667 0.00 0.00 35.13 1.73
326 327 5.512942 TCTGTGGGATCTTCAAACCATAA 57.487 39.130 0.00 0.00 35.13 1.90
327 328 5.684704 GATCTGTGGGATCTTCAAACCATA 58.315 41.667 0.00 0.00 45.38 2.74
328 329 4.530875 GATCTGTGGGATCTTCAAACCAT 58.469 43.478 0.00 0.00 45.38 3.55
329 330 3.955471 GATCTGTGGGATCTTCAAACCA 58.045 45.455 0.00 0.00 45.38 3.67
339 340 1.213926 GGCCTCTTTGATCTGTGGGAT 59.786 52.381 0.00 0.00 37.37 3.85
340 341 0.620556 GGCCTCTTTGATCTGTGGGA 59.379 55.000 0.00 0.00 0.00 4.37
341 342 0.394899 GGGCCTCTTTGATCTGTGGG 60.395 60.000 0.84 0.00 0.00 4.61
342 343 0.394899 GGGGCCTCTTTGATCTGTGG 60.395 60.000 0.84 0.00 0.00 4.17
343 344 0.622665 AGGGGCCTCTTTGATCTGTG 59.377 55.000 0.00 0.00 0.00 3.66
344 345 0.622665 CAGGGGCCTCTTTGATCTGT 59.377 55.000 0.00 0.00 0.00 3.41
345 346 0.914644 TCAGGGGCCTCTTTGATCTG 59.085 55.000 0.00 0.00 0.00 2.90
346 347 1.563410 CTTCAGGGGCCTCTTTGATCT 59.437 52.381 0.00 0.00 0.00 2.75
347 348 1.561542 TCTTCAGGGGCCTCTTTGATC 59.438 52.381 0.00 0.00 0.00 2.92
348 349 1.673767 TCTTCAGGGGCCTCTTTGAT 58.326 50.000 0.00 0.00 0.00 2.57
349 350 1.444933 TTCTTCAGGGGCCTCTTTGA 58.555 50.000 0.00 0.00 0.00 2.69
350 351 2.292828 TTTCTTCAGGGGCCTCTTTG 57.707 50.000 0.00 0.00 0.00 2.77
351 352 2.491640 CCTTTTCTTCAGGGGCCTCTTT 60.492 50.000 0.00 0.00 0.00 2.52
352 353 1.076187 CCTTTTCTTCAGGGGCCTCTT 59.924 52.381 0.00 0.00 0.00 2.85
353 354 0.701147 CCTTTTCTTCAGGGGCCTCT 59.299 55.000 0.00 0.00 0.00 3.69
354 355 0.698818 TCCTTTTCTTCAGGGGCCTC 59.301 55.000 0.84 0.00 31.50 4.70
355 356 1.387119 ATCCTTTTCTTCAGGGGCCT 58.613 50.000 0.84 0.00 31.50 5.19
356 357 2.025321 TGTATCCTTTTCTTCAGGGGCC 60.025 50.000 0.00 0.00 31.50 5.80
357 358 3.282885 CTGTATCCTTTTCTTCAGGGGC 58.717 50.000 0.00 0.00 31.50 5.80
372 373 3.925299 CCGATCATGTGATCTGCTGTATC 59.075 47.826 18.00 0.00 46.58 2.24
374 375 2.036346 CCCGATCATGTGATCTGCTGTA 59.964 50.000 18.00 0.00 46.58 2.74
375 376 1.202615 CCCGATCATGTGATCTGCTGT 60.203 52.381 18.00 0.00 46.58 4.40
376 377 1.069668 TCCCGATCATGTGATCTGCTG 59.930 52.381 18.00 5.39 46.58 4.41
377 378 1.343789 CTCCCGATCATGTGATCTGCT 59.656 52.381 18.00 0.00 46.58 4.24
378 379 1.342496 TCTCCCGATCATGTGATCTGC 59.658 52.381 18.00 0.00 46.58 4.26
379 380 2.609984 GCTCTCCCGATCATGTGATCTG 60.610 54.545 18.00 12.69 46.58 2.90
409 410 3.124921 CGGTGGTTGGGACGATGC 61.125 66.667 0.00 0.00 0.00 3.91
411 412 1.550130 ATGACGGTGGTTGGGACGAT 61.550 55.000 0.00 0.00 0.00 3.73
414 415 1.072505 ACATGACGGTGGTTGGGAC 59.927 57.895 0.00 0.00 0.00 4.46
428 429 8.555166 TTTTAAGAAGCTACGAAAAACACATG 57.445 30.769 0.00 0.00 0.00 3.21
429 430 9.016623 GTTTTTAAGAAGCTACGAAAAACACAT 57.983 29.630 21.77 0.00 44.03 3.21
430 431 8.238631 AGTTTTTAAGAAGCTACGAAAAACACA 58.761 29.630 25.12 3.87 45.68 3.72
431 432 8.610855 AGTTTTTAAGAAGCTACGAAAAACAC 57.389 30.769 25.12 12.13 45.68 3.32
432 433 7.637132 CGAGTTTTTAAGAAGCTACGAAAAACA 59.363 33.333 25.12 3.79 45.68 2.83
433 434 7.356235 GCGAGTTTTTAAGAAGCTACGAAAAAC 60.356 37.037 20.40 20.40 44.54 2.43
434 435 6.630045 GCGAGTTTTTAAGAAGCTACGAAAAA 59.370 34.615 0.00 0.00 0.00 1.94
441 444 6.129009 CGTACTTGCGAGTTTTTAAGAAGCTA 60.129 38.462 12.97 0.00 37.33 3.32
442 445 5.333111 CGTACTTGCGAGTTTTTAAGAAGCT 60.333 40.000 12.97 0.00 37.33 3.74
473 476 3.858812 GTGTATGTACGTATCGGCAAACA 59.141 43.478 0.00 0.00 0.00 2.83
486 513 5.914033 ACACCAGGATATGTGTGTATGTAC 58.086 41.667 0.00 0.00 43.69 2.90
495 522 2.201732 GTGCGTACACCAGGATATGTG 58.798 52.381 0.00 0.00 41.21 3.21
501 528 1.375396 GCATGTGCGTACACCAGGA 60.375 57.895 8.99 0.00 46.86 3.86
502 529 3.177600 GCATGTGCGTACACCAGG 58.822 61.111 8.99 0.19 46.86 4.45
594 685 3.090532 GTAGGTGGGAGGGGGCAG 61.091 72.222 0.00 0.00 0.00 4.85
595 686 4.752594 GGTAGGTGGGAGGGGGCA 62.753 72.222 0.00 0.00 0.00 5.36
602 693 4.715130 AGCTGGCGGTAGGTGGGA 62.715 66.667 0.00 0.00 0.00 4.37
621 732 0.250597 GGGACGTGTAGGGTTTGCTT 60.251 55.000 0.00 0.00 0.00 3.91
637 751 4.024984 CAGGGAGGGGGACAGGGA 62.025 72.222 0.00 0.00 0.00 4.20
653 767 3.309296 GGAGTGGAGTAATGGAGGATCA 58.691 50.000 0.00 0.00 36.25 2.92
662 776 5.161135 AGGATGATGATGGAGTGGAGTAAT 58.839 41.667 0.00 0.00 0.00 1.89
663 777 4.560739 AGGATGATGATGGAGTGGAGTAA 58.439 43.478 0.00 0.00 0.00 2.24
664 882 4.155709 GAGGATGATGATGGAGTGGAGTA 58.844 47.826 0.00 0.00 0.00 2.59
665 883 2.971330 GAGGATGATGATGGAGTGGAGT 59.029 50.000 0.00 0.00 0.00 3.85
671 889 2.833338 GAGGAGGAGGATGATGATGGAG 59.167 54.545 0.00 0.00 0.00 3.86
673 891 1.549620 CGAGGAGGAGGATGATGATGG 59.450 57.143 0.00 0.00 0.00 3.51
675 893 2.806434 CTCGAGGAGGAGGATGATGAT 58.194 52.381 3.91 0.00 0.00 2.45
676 894 1.821272 GCTCGAGGAGGAGGATGATGA 60.821 57.143 15.58 0.00 34.56 2.92
690 908 0.382158 TGTAATCTGCCTCGCTCGAG 59.618 55.000 8.45 8.45 41.63 4.04
693 911 2.599216 GCTGTAATCTGCCTCGCTC 58.401 57.895 0.00 0.00 33.40 5.03
694 912 4.844420 GCTGTAATCTGCCTCGCT 57.156 55.556 0.00 0.00 33.40 4.93
700 918 2.579873 ACCATCATGGCTGTAATCTGC 58.420 47.619 2.52 0.00 42.67 4.26
702 920 4.508551 TCAACCATCATGGCTGTAATCT 57.491 40.909 2.52 0.00 42.67 2.40
703 921 5.526115 CAATCAACCATCATGGCTGTAATC 58.474 41.667 2.52 0.00 42.67 1.75
719 937 1.647545 TAGCCGCTGCAGCAATCAAC 61.648 55.000 36.03 18.38 42.21 3.18
728 946 4.328025 TGGTGCTTAGCCGCTGCA 62.328 61.111 2.16 1.72 41.13 4.41
734 952 0.800631 GTTAACCGTGGTGCTTAGCC 59.199 55.000 0.29 0.00 0.00 3.93
829 1063 2.587247 GCAGACAGTGGGGAGCTCA 61.587 63.158 17.19 0.00 0.00 4.26
849 1083 2.997897 GAGGTGAGGCCGTGGTCT 60.998 66.667 0.00 0.00 43.70 3.85
850 1084 3.311110 TGAGGTGAGGCCGTGGTC 61.311 66.667 0.00 0.00 43.70 4.02
852 1086 3.302347 GAGTGAGGTGAGGCCGTGG 62.302 68.421 0.00 0.00 43.70 4.94
853 1087 2.262915 GAGTGAGGTGAGGCCGTG 59.737 66.667 0.00 0.00 43.70 4.94
854 1088 2.997897 GGAGTGAGGTGAGGCCGT 60.998 66.667 0.00 0.00 43.70 5.68
856 1090 3.403558 GGGGAGTGAGGTGAGGCC 61.404 72.222 0.00 0.00 37.58 5.19
857 1091 1.566298 ATTGGGGAGTGAGGTGAGGC 61.566 60.000 0.00 0.00 0.00 4.70
858 1092 0.543749 GATTGGGGAGTGAGGTGAGG 59.456 60.000 0.00 0.00 0.00 3.86
859 1093 0.543749 GGATTGGGGAGTGAGGTGAG 59.456 60.000 0.00 0.00 0.00 3.51
860 1094 0.119155 AGGATTGGGGAGTGAGGTGA 59.881 55.000 0.00 0.00 0.00 4.02
861 1095 0.543749 GAGGATTGGGGAGTGAGGTG 59.456 60.000 0.00 0.00 0.00 4.00
862 1096 0.119155 TGAGGATTGGGGAGTGAGGT 59.881 55.000 0.00 0.00 0.00 3.85
863 1097 0.543749 GTGAGGATTGGGGAGTGAGG 59.456 60.000 0.00 0.00 0.00 3.86
893 1127 6.557253 TCCTCCTCCTCGAATTTATTATTCCA 59.443 38.462 0.00 0.00 0.00 3.53
908 1142 2.255770 TTTTCCTCCTCCTCCTCCTC 57.744 55.000 0.00 0.00 0.00 3.71
909 1143 2.743131 TTTTTCCTCCTCCTCCTCCT 57.257 50.000 0.00 0.00 0.00 3.69
965 1208 1.579932 CAGCACAAGCAAGCAGAGG 59.420 57.895 0.00 0.00 45.49 3.69
966 1209 1.081376 GCAGCACAAGCAAGCAGAG 60.081 57.895 0.00 0.00 45.49 3.35
967 1210 2.558286 GGCAGCACAAGCAAGCAGA 61.558 57.895 0.00 0.00 45.49 4.26
968 1211 2.049433 GGCAGCACAAGCAAGCAG 60.049 61.111 0.00 0.00 45.49 4.24
969 1212 3.608662 GGGCAGCACAAGCAAGCA 61.609 61.111 0.00 0.00 45.49 3.91
970 1213 4.368543 GGGGCAGCACAAGCAAGC 62.369 66.667 0.00 0.00 45.49 4.01
971 1214 3.688159 GGGGGCAGCACAAGCAAG 61.688 66.667 0.00 0.00 45.49 4.01
972 1215 4.223125 AGGGGGCAGCACAAGCAA 62.223 61.111 0.00 0.00 45.49 3.91
999 1242 4.105733 TGCTTCTTGCGGCGCATG 62.106 61.111 36.69 34.99 46.63 4.06
1105 1354 1.409241 GCTGAATGGCTTGGAGGATGA 60.409 52.381 0.00 0.00 0.00 2.92
1151 1400 2.581354 CGTTCCCTCCTCCTGCTG 59.419 66.667 0.00 0.00 0.00 4.41
1154 1403 2.685380 AGCCGTTCCCTCCTCCTG 60.685 66.667 0.00 0.00 0.00 3.86
1158 1407 2.685380 CCAGAGCCGTTCCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
1159 1408 3.003763 ACCAGAGCCGTTCCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
1161 1410 3.322466 CCACCAGAGCCGTTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
1170 1419 2.670934 GCACCAGCACCACCAGAG 60.671 66.667 0.00 0.00 41.58 3.35
1171 1420 3.170672 AGCACCAGCACCACCAGA 61.171 61.111 0.00 0.00 45.49 3.86
1863 2121 1.064979 GTCTCGTCCTCCTCCTCTTCT 60.065 57.143 0.00 0.00 0.00 2.85
1868 2126 2.684735 GGGTCTCGTCCTCCTCCT 59.315 66.667 0.00 0.00 0.00 3.69
1983 2241 0.323451 TCAGCAGGAGAGCGTTCCTA 60.323 55.000 11.12 0.00 45.86 2.94
1992 2250 2.186125 CAGCGCATCAGCAGGAGA 59.814 61.111 11.47 0.00 42.27 3.71
2122 2380 4.622933 GCCTTCTTCCTCCTCTTCTTTCTC 60.623 50.000 0.00 0.00 0.00 2.87
2125 2383 2.027653 CGCCTTCTTCCTCCTCTTCTTT 60.028 50.000 0.00 0.00 0.00 2.52
2133 2391 2.188207 GCCTCGCCTTCTTCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
2134 2392 2.188207 GGCCTCGCCTTCTTCCTC 59.812 66.667 0.00 0.00 46.69 3.71
2160 2418 1.200948 GCTTCCACTGCACATTCCTTC 59.799 52.381 0.00 0.00 0.00 3.46
2174 2432 0.615331 AGCTGAATTCCGAGCTTCCA 59.385 50.000 13.15 0.00 43.15 3.53
2208 2466 4.569023 CGCTCGCGGCATACCTCA 62.569 66.667 17.57 0.00 41.91 3.86
2231 2492 2.470286 CGCCGTCGTCTTCAAAGC 59.530 61.111 0.00 0.00 0.00 3.51
2232 2493 3.011760 GCCGCCGTCGTCTTCAAAG 62.012 63.158 0.00 0.00 0.00 2.77
2233 2494 3.039588 GCCGCCGTCGTCTTCAAA 61.040 61.111 0.00 0.00 0.00 2.69
2265 2526 1.068588 TCTTCAGACACCACTTGACCG 59.931 52.381 0.00 0.00 0.00 4.79
2273 2534 2.495270 GAGCTCTCATCTTCAGACACCA 59.505 50.000 6.43 0.00 0.00 4.17
2276 2537 2.812658 TGGAGCTCTCATCTTCAGACA 58.187 47.619 14.64 0.00 0.00 3.41
2321 2582 0.179065 TCTGCAGCCTCCATCATTCG 60.179 55.000 9.47 0.00 0.00 3.34
2379 2640 1.659098 CCTACGTCCTTGCGAACAATC 59.341 52.381 0.00 0.00 34.61 2.67
2484 2745 0.179000 CCTCGTCCTCCATTCTTGGG 59.821 60.000 0.00 0.00 43.81 4.12
2499 2763 2.581354 CTCCTGCCCTTCACCTCG 59.419 66.667 0.00 0.00 0.00 4.63
2575 2839 3.970410 CCTCCTGGTGCTGCCCAA 61.970 66.667 10.39 0.00 33.07 4.12
2595 2859 1.795768 CCTTGCTGCTCGTAGAAACA 58.204 50.000 0.00 0.00 34.09 2.83
2601 2865 2.579201 GAGGCCTTGCTGCTCGTA 59.421 61.111 6.77 0.00 0.00 3.43
2604 2868 2.124778 GAGGAGGCCTTGCTGCTC 60.125 66.667 6.77 0.00 31.76 4.26
2628 2892 2.178273 CGCCTGTCGACACGATCA 59.822 61.111 20.29 0.00 41.67 2.92
2701 2965 1.139058 GAAGCTTGCCCTCCTCGAATA 59.861 52.381 2.10 0.00 0.00 1.75
2703 2967 1.194781 AGAAGCTTGCCCTCCTCGAA 61.195 55.000 2.10 0.00 0.00 3.71
2880 3144 1.078848 CTCTTGGGCTTCCTCCACG 60.079 63.158 0.00 0.00 33.43 4.94
2903 3167 2.421248 GCCTCTTCCTTTCCATCCTCAG 60.421 54.545 0.00 0.00 0.00 3.35
2933 3197 2.026822 GCTCCTTCTTCCTCACCATCAA 60.027 50.000 0.00 0.00 0.00 2.57
2953 3217 2.206815 TCAGCACATTGTGTTGTTGC 57.793 45.000 26.31 9.51 43.44 4.17
2959 3223 4.142204 TGTGTGAATTTCAGCACATTGTGT 60.142 37.500 20.83 2.75 45.59 3.72
2970 3234 6.038603 CCTTCTGAACTTCTGTGTGAATTTCA 59.961 38.462 9.60 9.60 45.65 2.69
2977 3241 4.191544 TCAACCTTCTGAACTTCTGTGTG 58.808 43.478 0.00 0.00 0.00 3.82
2985 3249 1.344763 CCGGTCTCAACCTTCTGAACT 59.655 52.381 0.00 0.00 44.04 3.01
2987 3251 1.618837 CTCCGGTCTCAACCTTCTGAA 59.381 52.381 0.00 0.00 44.04 3.02
2989 3253 0.969894 ACTCCGGTCTCAACCTTCTG 59.030 55.000 0.00 0.00 44.04 3.02
3022 3286 0.254462 TCCTGCTTCACCACAACACA 59.746 50.000 0.00 0.00 0.00 3.72
3023 3287 1.065551 GTTCCTGCTTCACCACAACAC 59.934 52.381 0.00 0.00 0.00 3.32
3024 3288 1.340502 TGTTCCTGCTTCACCACAACA 60.341 47.619 0.00 0.00 0.00 3.33
3029 3293 0.397941 CCTCTGTTCCTGCTTCACCA 59.602 55.000 0.00 0.00 0.00 4.17
3081 3345 0.758123 TGGGCTCGCACATCATCATA 59.242 50.000 0.00 0.00 0.00 2.15
3205 3469 2.812619 CCTTCATCTCCTCCGGGGC 61.813 68.421 0.00 0.00 34.39 5.80
3208 3472 1.709578 TCATCCTTCATCTCCTCCGG 58.290 55.000 0.00 0.00 0.00 5.14
3218 3500 4.021229 AGCATTGCTTGAATCATCCTTCA 58.979 39.130 5.03 0.00 33.89 3.02
3258 3543 2.763448 AGCGCTCTCTTCTGTATCCTTT 59.237 45.455 2.64 0.00 0.00 3.11
3340 3625 3.710722 CTCCCCTGCTGGCTTCGT 61.711 66.667 3.63 0.00 0.00 3.85
3432 3717 1.871772 CAAAGGCTCCGACTTGCAG 59.128 57.895 0.00 0.00 27.73 4.41
3447 3732 2.733218 CGAGCAGACGACCGCAAA 60.733 61.111 0.00 0.00 35.09 3.68
3448 3733 4.717629 CCGAGCAGACGACCGCAA 62.718 66.667 0.00 0.00 35.09 4.85
3551 3836 1.481901 TAAACCAGGGCGTACCAGCA 61.482 55.000 0.00 0.00 43.89 4.41
3564 3859 8.974238 TCACTAACTAGCTAGCTAATTAAACCA 58.026 33.333 24.20 5.64 0.00 3.67
3565 3860 9.247126 GTCACTAACTAGCTAGCTAATTAAACC 57.753 37.037 24.20 9.89 0.00 3.27
3566 3861 9.247126 GGTCACTAACTAGCTAGCTAATTAAAC 57.753 37.037 24.20 19.54 0.00 2.01
3568 3863 8.411683 GTGGTCACTAACTAGCTAGCTAATTAA 58.588 37.037 24.20 8.56 0.00 1.40
3569 3864 7.014038 GGTGGTCACTAACTAGCTAGCTAATTA 59.986 40.741 24.20 22.47 34.34 1.40
3570 3865 6.183360 GGTGGTCACTAACTAGCTAGCTAATT 60.183 42.308 24.20 22.56 34.34 1.40
3571 3866 5.302313 GGTGGTCACTAACTAGCTAGCTAAT 59.698 44.000 24.20 13.17 34.34 1.73
3687 3982 4.514781 TCTCACATAACTAACAGCACGT 57.485 40.909 0.00 0.00 0.00 4.49
3688 3983 4.864806 ACATCTCACATAACTAACAGCACG 59.135 41.667 0.00 0.00 0.00 5.34
3689 3984 5.063944 CCACATCTCACATAACTAACAGCAC 59.936 44.000 0.00 0.00 0.00 4.40
3690 3985 5.046663 TCCACATCTCACATAACTAACAGCA 60.047 40.000 0.00 0.00 0.00 4.41
3707 4002 1.909302 TCCCTTGTCCTTCTCCACATC 59.091 52.381 0.00 0.00 0.00 3.06
3710 4005 4.779993 AATATCCCTTGTCCTTCTCCAC 57.220 45.455 0.00 0.00 0.00 4.02
3711 4006 5.163195 GCTTAATATCCCTTGTCCTTCTCCA 60.163 44.000 0.00 0.00 0.00 3.86
3712 4007 5.163195 TGCTTAATATCCCTTGTCCTTCTCC 60.163 44.000 0.00 0.00 0.00 3.71
3715 4010 6.122964 ACTTGCTTAATATCCCTTGTCCTTC 58.877 40.000 0.00 0.00 0.00 3.46
3716 4011 6.079712 ACTTGCTTAATATCCCTTGTCCTT 57.920 37.500 0.00 0.00 0.00 3.36
3717 4012 5.717119 ACTTGCTTAATATCCCTTGTCCT 57.283 39.130 0.00 0.00 0.00 3.85
3800 4098 0.593128 GCACACCGAACAGAGCAAAT 59.407 50.000 0.00 0.00 0.00 2.32
3807 4105 1.429463 GGAACTAGCACACCGAACAG 58.571 55.000 0.00 0.00 0.00 3.16
3822 4120 3.439129 CCATCGTAACAGGAAAAGGGAAC 59.561 47.826 0.00 0.00 0.00 3.62
3825 4126 3.343941 TCCATCGTAACAGGAAAAGGG 57.656 47.619 0.00 0.00 0.00 3.95
3834 4135 4.006319 TGCAAACATCATCCATCGTAACA 58.994 39.130 0.00 0.00 0.00 2.41
3839 4140 3.703286 ATGTGCAAACATCATCCATCG 57.297 42.857 0.00 0.00 0.00 3.84
3967 4274 8.386264 AGAGAAGGATTTCCATTTCTTGTCTTA 58.614 33.333 0.00 0.00 35.47 2.10
3990 4297 5.464389 CAGATTGGTTTTGCAAGGAAAAGAG 59.536 40.000 0.00 0.00 0.00 2.85
4019 4327 3.351020 GATTGCATCTCCACAATCTGC 57.649 47.619 8.15 0.00 45.59 4.26
4058 4370 3.176552 TGGTTTTTGCACCAGTCATTG 57.823 42.857 0.00 0.00 42.27 2.82
4081 4393 0.905357 CACAGATCCTCCTCCGGTTT 59.095 55.000 0.00 0.00 0.00 3.27
4086 4398 0.980231 ACAGGCACAGATCCTCCTCC 60.980 60.000 0.00 0.00 0.00 4.30
4106 4433 2.874701 ACAATTGAGCTGTCACTGTCAC 59.125 45.455 13.59 0.00 30.10 3.67
4110 4437 4.675510 ACAAAACAATTGAGCTGTCACTG 58.324 39.130 13.59 0.00 30.10 3.66
4111 4438 4.989279 ACAAAACAATTGAGCTGTCACT 57.011 36.364 13.59 0.00 30.10 3.41
4118 4445 5.276161 CGTACAACCAACAAAACAATTGAGC 60.276 40.000 13.59 0.00 0.00 4.26
4143 4470 2.876550 GAGCACTTGAAAAACCCTACGT 59.123 45.455 0.00 0.00 0.00 3.57
4144 4471 3.058914 CAGAGCACTTGAAAAACCCTACG 60.059 47.826 0.00 0.00 0.00 3.51
4150 4477 9.677567 TGTATAATTTCAGAGCACTTGAAAAAC 57.322 29.630 12.30 9.64 35.55 2.43
4157 4484 7.636150 AGCAATGTATAATTTCAGAGCACTT 57.364 32.000 0.00 0.00 0.00 3.16
4201 4581 3.070429 GCAAAAGGCATCAATAGTCGG 57.930 47.619 0.00 0.00 43.97 4.79
4221 4602 5.335661 GCTTATTACCAGGTTCCAACAACAG 60.336 44.000 0.00 0.00 0.00 3.16
4230 4611 1.940613 CTGCGGCTTATTACCAGGTTC 59.059 52.381 0.00 0.00 0.00 3.62
4249 4630 1.143684 ACCTCAACATCCACAGCAACT 59.856 47.619 0.00 0.00 0.00 3.16
4301 4689 7.769507 CCTCTACTCTCTTGTATGTACTGTACA 59.230 40.741 21.68 21.68 43.80 2.90
4303 4691 7.859540 ACCTCTACTCTCTTGTATGTACTGTA 58.140 38.462 0.00 0.00 0.00 2.74
4307 4695 8.053026 TGAAACCTCTACTCTCTTGTATGTAC 57.947 38.462 0.00 0.00 0.00 2.90
4308 4696 7.889073 ACTGAAACCTCTACTCTCTTGTATGTA 59.111 37.037 0.00 0.00 0.00 2.29
4309 4697 6.722129 ACTGAAACCTCTACTCTCTTGTATGT 59.278 38.462 0.00 0.00 0.00 2.29
4310 4698 7.032580 CACTGAAACCTCTACTCTCTTGTATG 58.967 42.308 0.00 0.00 0.00 2.39
4311 4699 6.722129 ACACTGAAACCTCTACTCTCTTGTAT 59.278 38.462 0.00 0.00 0.00 2.29
4312 4700 6.016192 CACACTGAAACCTCTACTCTCTTGTA 60.016 42.308 0.00 0.00 0.00 2.41
4313 4701 4.896482 ACACTGAAACCTCTACTCTCTTGT 59.104 41.667 0.00 0.00 0.00 3.16
4314 4702 5.221342 ACACACTGAAACCTCTACTCTCTTG 60.221 44.000 0.00 0.00 0.00 3.02
4326 4714 0.249031 GCTGGCAACACACTGAAACC 60.249 55.000 0.00 0.00 46.17 3.27
4329 4717 2.340210 TTAGCTGGCAACACACTGAA 57.660 45.000 0.00 0.00 46.17 3.02
4330 4718 2.340210 TTTAGCTGGCAACACACTGA 57.660 45.000 0.00 0.00 46.17 3.41
4331 4719 4.023279 TGTTATTTAGCTGGCAACACACTG 60.023 41.667 0.00 0.00 46.17 3.66
4332 4720 4.141287 TGTTATTTAGCTGGCAACACACT 58.859 39.130 0.00 0.00 46.17 3.55
4333 4721 4.497473 TGTTATTTAGCTGGCAACACAC 57.503 40.909 0.00 0.00 46.17 3.82
4334 4722 4.617995 GCATGTTATTTAGCTGGCAACACA 60.618 41.667 0.00 0.00 46.17 3.72
4335 4723 3.859386 GCATGTTATTTAGCTGGCAACAC 59.141 43.478 0.00 0.00 46.17 3.32
4337 4725 3.108144 CGCATGTTATTTAGCTGGCAAC 58.892 45.455 0.00 0.00 0.00 4.17
4339 4727 2.354510 GACGCATGTTATTTAGCTGGCA 59.645 45.455 0.00 0.00 0.00 4.92
4340 4728 2.287009 GGACGCATGTTATTTAGCTGGC 60.287 50.000 0.00 0.00 0.00 4.85
4342 4730 3.060272 CGAGGACGCATGTTATTTAGCTG 60.060 47.826 0.00 0.00 0.00 4.24
4343 4731 3.123804 CGAGGACGCATGTTATTTAGCT 58.876 45.455 0.00 0.00 0.00 3.32
4344 4732 2.864343 ACGAGGACGCATGTTATTTAGC 59.136 45.455 0.00 0.00 43.96 3.09
4345 4733 3.863424 ACACGAGGACGCATGTTATTTAG 59.137 43.478 0.00 0.00 43.96 1.85
4367 4768 1.674359 ACATGCTGTTGTTCGGTCAA 58.326 45.000 0.00 0.00 0.00 3.18
4379 4780 0.956633 AAGCTGGTGACAACATGCTG 59.043 50.000 15.28 0.00 42.06 4.41
4402 4803 6.743575 AGTGCAAACTGTTCTATTATGGAC 57.256 37.500 4.71 4.71 0.00 4.02
4409 4810 8.904099 AACTTTACTAGTGCAAACTGTTCTAT 57.096 30.769 5.39 0.00 37.12 1.98
4411 4812 8.726870 TTAACTTTACTAGTGCAAACTGTTCT 57.273 30.769 5.39 0.00 37.12 3.01
4416 4817 6.990349 TCAGCTTAACTTTACTAGTGCAAACT 59.010 34.615 5.39 0.00 37.12 2.66
4418 4819 6.990349 ACTCAGCTTAACTTTACTAGTGCAAA 59.010 34.615 5.39 0.00 37.12 3.68
4421 4822 8.530269 TTTACTCAGCTTAACTTTACTAGTGC 57.470 34.615 5.39 0.00 37.12 4.40
4422 4823 9.909644 TCTTTACTCAGCTTAACTTTACTAGTG 57.090 33.333 5.39 0.00 37.12 2.74
4428 4829 9.893305 GCAATTTCTTTACTCAGCTTAACTTTA 57.107 29.630 0.00 0.00 0.00 1.85
4429 4830 7.867909 GGCAATTTCTTTACTCAGCTTAACTTT 59.132 33.333 0.00 0.00 0.00 2.66
4432 4833 6.914259 AGGCAATTTCTTTACTCAGCTTAAC 58.086 36.000 0.00 0.00 0.00 2.01
4437 4838 3.684788 TCGAGGCAATTTCTTTACTCAGC 59.315 43.478 0.00 0.00 0.00 4.26
4453 4860 1.153349 GACCCAATCCACTCGAGGC 60.153 63.158 18.41 0.00 0.00 4.70
4456 4863 0.904865 AGCAGACCCAATCCACTCGA 60.905 55.000 0.00 0.00 0.00 4.04
4464 4871 1.677966 CAGCAGCAGCAGACCCAAT 60.678 57.895 3.17 0.00 45.49 3.16
4477 4884 1.098129 ATCATCAGCAGCAGCAGCAG 61.098 55.000 12.92 3.97 45.49 4.24
4484 4891 3.771577 AGATCATCATCATCAGCAGCA 57.228 42.857 0.00 0.00 0.00 4.41
4507 4914 5.635417 TCGTGCAACCATTCATAAATTGA 57.365 34.783 0.00 0.00 0.00 2.57
4508 4915 6.310956 ACAATCGTGCAACCATTCATAAATTG 59.689 34.615 0.00 0.00 0.00 2.32
4509 4916 6.397272 ACAATCGTGCAACCATTCATAAATT 58.603 32.000 0.00 0.00 0.00 1.82
4510 4917 5.964758 ACAATCGTGCAACCATTCATAAAT 58.035 33.333 0.00 0.00 0.00 1.40
4511 4918 5.384063 ACAATCGTGCAACCATTCATAAA 57.616 34.783 0.00 0.00 0.00 1.40
4512 4919 5.384063 AACAATCGTGCAACCATTCATAA 57.616 34.783 0.00 0.00 0.00 1.90
4513 4920 5.048434 TGAAACAATCGTGCAACCATTCATA 60.048 36.000 0.00 0.00 0.00 2.15
4514 4921 3.940209 AACAATCGTGCAACCATTCAT 57.060 38.095 0.00 0.00 0.00 2.57
4515 4922 3.067320 TGAAACAATCGTGCAACCATTCA 59.933 39.130 0.00 0.00 0.00 2.57
4516 4923 3.637432 TGAAACAATCGTGCAACCATTC 58.363 40.909 0.00 0.00 0.00 2.67
4517 4924 3.724508 TGAAACAATCGTGCAACCATT 57.275 38.095 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.