Multiple sequence alignment - TraesCS1D01G410000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G410000 chr1D 100.000 3075 0 0 1738 4812 471612469 471609395 0.000000e+00 5679.0
1 TraesCS1D01G410000 chr1D 100.000 1551 0 0 1 1551 471614206 471612656 0.000000e+00 2865.0
2 TraesCS1D01G410000 chr1D 94.574 129 7 0 2182 2310 469018558 469018686 2.940000e-47 200.0
3 TraesCS1D01G410000 chr1D 93.103 58 4 0 2623 2680 361119928 361119985 8.580000e-13 86.1
4 TraesCS1D01G410000 chr3D 98.509 1543 19 4 1 1542 350784164 350785703 0.000000e+00 2719.0
5 TraesCS1D01G410000 chr3D 98.557 1317 18 1 3497 4812 350789208 350790524 0.000000e+00 2326.0
6 TraesCS1D01G410000 chr3D 96.769 650 17 3 1738 2384 350785734 350786382 0.000000e+00 1081.0
7 TraesCS1D01G410000 chr3D 99.200 250 2 0 2373 2622 350788966 350789215 7.340000e-123 451.0
8 TraesCS1D01G410000 chr5D 97.224 1513 14 4 1 1504 310568442 310569935 0.000000e+00 2536.0
9 TraesCS1D01G410000 chr5D 99.014 1318 11 1 3497 4812 310571159 310572476 0.000000e+00 2361.0
10 TraesCS1D01G410000 chr5D 98.423 888 11 2 1738 2622 310570279 310571166 0.000000e+00 1559.0
11 TraesCS1D01G410000 chr5D 90.610 213 20 0 334 546 439317820 439318032 2.840000e-72 283.0
12 TraesCS1D01G410000 chr2B 96.067 1322 28 5 3497 4812 443271489 443270186 0.000000e+00 2132.0
13 TraesCS1D01G410000 chr2B 87.569 901 73 20 2623 3496 785600046 785600934 0.000000e+00 1007.0
14 TraesCS1D01G410000 chr2B 97.785 316 7 0 2307 2622 443271797 443271482 3.270000e-151 545.0
15 TraesCS1D01G410000 chr2B 97.126 174 5 0 2012 2185 443271967 443271794 1.310000e-75 294.0
16 TraesCS1D01G410000 chr2B 90.323 155 14 1 2163 2317 630382141 630381988 8.170000e-48 202.0
17 TraesCS1D01G410000 chr2B 76.515 264 45 15 2696 2946 678564901 678564642 1.410000e-25 128.0
18 TraesCS1D01G410000 chr2B 74.309 362 51 29 2623 2946 675513333 675512976 1.090000e-21 115.0
19 TraesCS1D01G410000 chr3B 95.584 1336 27 4 3497 4812 26490248 26491571 0.000000e+00 2111.0
20 TraesCS1D01G410000 chr3B 90.580 828 58 9 2682 3499 16916976 16916159 0.000000e+00 1079.0
21 TraesCS1D01G410000 chr3B 98.137 322 5 1 2307 2628 26489940 26490260 1.170000e-155 560.0
22 TraesCS1D01G410000 chr3B 96.316 190 7 0 1996 2185 26489754 26489943 3.620000e-81 313.0
23 TraesCS1D01G410000 chr3B 88.800 250 18 5 43 289 528558764 528559006 1.010000e-76 298.0
24 TraesCS1D01G410000 chr3B 90.323 155 14 1 2163 2317 351688476 351688629 8.170000e-48 202.0
25 TraesCS1D01G410000 chr3B 88.333 60 7 0 2623 2682 16917061 16917002 6.680000e-09 73.1
26 TraesCS1D01G410000 chr2D 96.013 953 37 1 3852 4803 21223194 21224146 0.000000e+00 1548.0
27 TraesCS1D01G410000 chr2D 96.167 574 21 1 553 1126 188859615 188859043 0.000000e+00 937.0
28 TraesCS1D01G410000 chr2D 97.101 552 11 3 1 552 188860458 188859912 0.000000e+00 926.0
29 TraesCS1D01G410000 chr5A 98.061 825 15 1 3989 4812 48734291 48735115 0.000000e+00 1434.0
30 TraesCS1D01G410000 chr5A 95.011 441 11 3 1121 1551 48732885 48733324 0.000000e+00 682.0
31 TraesCS1D01G410000 chr5A 96.703 273 6 2 1916 2185 48733988 48734260 7.340000e-123 451.0
32 TraesCS1D01G410000 chr5A 100.000 175 0 0 1738 1912 48733349 48733523 1.670000e-84 324.0
33 TraesCS1D01G410000 chr5B 96.495 856 17 2 3955 4809 676237768 676238611 0.000000e+00 1402.0
34 TraesCS1D01G410000 chr5B 90.303 825 60 9 2682 3497 448208723 448209536 0.000000e+00 1062.0
35 TraesCS1D01G410000 chr5B 93.264 579 29 7 553 1126 532176924 532176351 0.000000e+00 845.0
36 TraesCS1D01G410000 chr5B 91.760 267 17 5 56 317 264911435 264911169 2.740000e-97 366.0
37 TraesCS1D01G410000 chr5B 96.744 215 6 1 1 215 641791169 641791382 1.650000e-94 357.0
38 TraesCS1D01G410000 chr5B 90.455 220 21 0 333 552 590081775 590081556 1.690000e-74 291.0
39 TraesCS1D01G410000 chr5B 90.000 210 10 5 1121 1321 521994841 521995048 1.330000e-65 261.0
40 TraesCS1D01G410000 chr5B 93.038 158 8 3 1768 1923 532175176 532175020 1.350000e-55 228.0
41 TraesCS1D01G410000 chr5B 95.349 129 6 0 2182 2310 406873362 406873490 6.310000e-49 206.0
42 TraesCS1D01G410000 chr5B 88.333 60 7 0 2623 2682 448208638 448208697 6.680000e-09 73.1
43 TraesCS1D01G410000 chr2A 94.002 817 45 4 2689 3505 22188941 22189753 0.000000e+00 1234.0
44 TraesCS1D01G410000 chr2A 97.500 40 1 0 193 232 740020540 740020579 8.640000e-08 69.4
45 TraesCS1D01G410000 chr1B 90.110 819 80 1 2683 3500 575569852 575570670 0.000000e+00 1062.0
46 TraesCS1D01G410000 chr1B 93.863 554 27 5 576 1126 30439716 30439167 0.000000e+00 828.0
47 TraesCS1D01G410000 chr1B 95.851 482 17 2 3929 4407 595344044 595344525 0.000000e+00 776.0
48 TraesCS1D01G410000 chr1B 94.406 143 7 1 73 215 84960144 84960285 8.110000e-53 219.0
49 TraesCS1D01G410000 chr1B 90.991 111 9 1 215 324 486308557 486308667 1.080000e-31 148.0
50 TraesCS1D01G410000 chr1B 76.154 260 41 17 2696 2938 685905578 685905833 3.040000e-22 117.0
51 TraesCS1D01G410000 chr7D 86.224 813 79 10 4029 4812 104219671 104218863 0.000000e+00 850.0
52 TraesCS1D01G410000 chr7D 84.770 348 48 3 3153 3496 629140765 629141111 1.280000e-90 344.0
53 TraesCS1D01G410000 chr7D 95.489 133 6 0 2180 2312 598598467 598598599 3.770000e-51 213.0
54 TraesCS1D01G410000 chr7D 76.296 270 40 20 2696 2946 66086981 66086717 6.540000e-24 122.0
55 TraesCS1D01G410000 chrUn 93.015 544 32 5 576 1117 235697794 235697255 0.000000e+00 789.0
56 TraesCS1D01G410000 chrUn 93.015 544 32 5 576 1117 319354891 319354352 0.000000e+00 789.0
57 TraesCS1D01G410000 chrUn 92.435 423 22 3 1121 1533 235696817 235696395 3.210000e-166 595.0
58 TraesCS1D01G410000 chrUn 90.714 420 27 4 1123 1533 22419446 22419862 2.530000e-152 549.0
59 TraesCS1D01G410000 chrUn 90.141 426 29 5 1121 1533 5426516 5426091 4.240000e-150 542.0
60 TraesCS1D01G410000 chrUn 92.676 355 17 3 1121 1466 319353914 319353560 2.000000e-138 503.0
61 TraesCS1D01G410000 chrUn 95.779 308 11 1 2307 2612 235695264 235694957 3.350000e-136 496.0
62 TraesCS1D01G410000 chrUn 95.779 308 11 1 2307 2612 248755482 248755175 3.350000e-136 496.0
63 TraesCS1D01G410000 chrUn 94.891 274 11 1 1915 2185 235695534 235695261 4.450000e-115 425.0
64 TraesCS1D01G410000 chrUn 94.891 274 11 1 1915 2185 248755752 248755479 4.450000e-115 425.0
65 TraesCS1D01G410000 chrUn 95.288 191 4 3 1738 1923 235696155 235695965 1.010000e-76 298.0
66 TraesCS1D01G410000 chrUn 95.288 191 4 3 1738 1923 248756373 248756183 1.010000e-76 298.0
67 TraesCS1D01G410000 chrUn 94.286 140 5 3 2174 2312 64149694 64149831 1.360000e-50 211.0
68 TraesCS1D01G410000 chr4B 92.196 551 30 7 576 1123 626513687 626514227 0.000000e+00 767.0
69 TraesCS1D01G410000 chr4B 98.387 434 5 2 691 1124 667988637 667988206 0.000000e+00 761.0
70 TraesCS1D01G410000 chr4B 93.617 423 17 4 1121 1533 626514667 626515089 1.470000e-174 623.0
71 TraesCS1D01G410000 chr4B 98.214 336 6 0 437 772 9939568 9939233 5.360000e-164 588.0
72 TraesCS1D01G410000 chr4B 96.066 305 9 2 2307 2609 626516220 626516523 1.200000e-135 494.0
73 TraesCS1D01G410000 chr4B 93.841 276 12 2 1915 2185 626515948 626516223 1.250000e-110 411.0
74 TraesCS1D01G410000 chr4B 97.807 228 5 0 2307 2534 667987885 667987658 1.260000e-105 394.0
75 TraesCS1D01G410000 chr4B 94.884 215 9 1 1 215 570891353 570891565 7.720000e-88 335.0
76 TraesCS1D01G410000 chr4B 95.506 178 5 1 1738 1912 626515328 626515505 1.020000e-71 281.0
77 TraesCS1D01G410000 chr4B 90.141 142 11 2 3653 3794 7034565 7034427 1.060000e-41 182.0
78 TraesCS1D01G410000 chr4B 93.258 89 6 0 3497 3585 577023329 577023241 1.090000e-26 132.0
79 TraesCS1D01G410000 chr7A 88.168 524 58 4 4292 4812 250808871 250808349 5.290000e-174 621.0
80 TraesCS1D01G410000 chr4A 96.226 318 10 1 2307 2622 563488742 563488425 1.980000e-143 520.0
81 TraesCS1D01G410000 chr4A 92.388 289 12 2 1255 1533 563503433 563503145 2.090000e-108 403.0
82 TraesCS1D01G410000 chr4A 92.701 274 13 2 1915 2185 563489008 563488739 5.840000e-104 388.0
83 TraesCS1D01G410000 chr4A 91.244 217 9 5 3583 3794 599348756 599348967 2.190000e-73 287.0
84 TraesCS1D01G410000 chr4A 94.558 147 6 2 1779 1923 563489609 563489463 4.850000e-55 226.0
85 TraesCS1D01G410000 chr4A 94.382 89 5 0 3497 3585 352589604 352589692 2.340000e-28 137.0
86 TraesCS1D01G410000 chr4A 76.378 254 45 13 2696 2938 707871098 707871347 6.540000e-24 122.0
87 TraesCS1D01G410000 chr6B 90.196 357 30 4 3149 3503 16974073 16974426 1.220000e-125 460.0
88 TraesCS1D01G410000 chr6B 92.019 213 17 0 340 552 710286555 710286343 2.820000e-77 300.0
89 TraesCS1D01G410000 chr6B 91.549 213 18 0 334 546 597994627 597994839 1.310000e-75 294.0
90 TraesCS1D01G410000 chr6B 85.197 304 21 13 2828 3117 16973783 16974076 1.690000e-74 291.0
91 TraesCS1D01G410000 chr6B 99.225 129 1 0 1 129 116278220 116278092 2.900000e-57 233.0
92 TraesCS1D01G410000 chr4D 92.095 253 20 0 1281 1533 509055364 509055616 1.650000e-94 357.0
93 TraesCS1D01G410000 chr4D 92.958 142 10 0 3653 3794 4351405 4351264 1.760000e-49 207.0
94 TraesCS1D01G410000 chr4D 91.549 71 5 1 255 324 451648372 451648302 3.960000e-16 97.1
95 TraesCS1D01G410000 chr6D 89.247 279 19 3 3174 3450 9150455 9150724 5.970000e-89 339.0
96 TraesCS1D01G410000 chr6D 83.251 406 20 12 2775 3159 9150121 9150499 3.590000e-86 329.0
97 TraesCS1D01G410000 chr6D 91.121 214 17 2 334 546 350112657 350112869 6.090000e-74 289.0
98 TraesCS1D01G410000 chr6D 96.063 127 5 0 2182 2308 237348723 237348849 1.760000e-49 207.0
99 TraesCS1D01G410000 chr6D 95.652 46 0 2 1876 1919 66260196 66260151 6.680000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G410000 chr1D 471609395 471614206 4811 True 4272.000000 5679 100.000000 1 4812 2 chr1D.!!$R1 4811
1 TraesCS1D01G410000 chr3D 350784164 350790524 6360 False 1644.250000 2719 98.258750 1 4812 4 chr3D.!!$F1 4811
2 TraesCS1D01G410000 chr5D 310568442 310572476 4034 False 2152.000000 2536 98.220333 1 4812 3 chr5D.!!$F2 4811
3 TraesCS1D01G410000 chr2B 785600046 785600934 888 False 1007.000000 1007 87.569000 2623 3496 1 chr2B.!!$F1 873
4 TraesCS1D01G410000 chr2B 443270186 443271967 1781 True 990.333333 2132 96.992667 2012 4812 3 chr2B.!!$R4 2800
5 TraesCS1D01G410000 chr3B 26489754 26491571 1817 False 994.666667 2111 96.679000 1996 4812 3 chr3B.!!$F3 2816
6 TraesCS1D01G410000 chr3B 16916159 16917061 902 True 576.050000 1079 89.456500 2623 3499 2 chr3B.!!$R1 876
7 TraesCS1D01G410000 chr2D 21223194 21224146 952 False 1548.000000 1548 96.013000 3852 4803 1 chr2D.!!$F1 951
8 TraesCS1D01G410000 chr2D 188859043 188860458 1415 True 931.500000 937 96.634000 1 1126 2 chr2D.!!$R1 1125
9 TraesCS1D01G410000 chr5A 48732885 48735115 2230 False 722.750000 1434 97.443750 1121 4812 4 chr5A.!!$F1 3691
10 TraesCS1D01G410000 chr5B 676237768 676238611 843 False 1402.000000 1402 96.495000 3955 4809 1 chr5B.!!$F4 854
11 TraesCS1D01G410000 chr5B 448208638 448209536 898 False 567.550000 1062 89.318000 2623 3497 2 chr5B.!!$F5 874
12 TraesCS1D01G410000 chr5B 532175020 532176924 1904 True 536.500000 845 93.151000 553 1923 2 chr5B.!!$R3 1370
13 TraesCS1D01G410000 chr2A 22188941 22189753 812 False 1234.000000 1234 94.002000 2689 3505 1 chr2A.!!$F1 816
14 TraesCS1D01G410000 chr1B 575569852 575570670 818 False 1062.000000 1062 90.110000 2683 3500 1 chr1B.!!$F3 817
15 TraesCS1D01G410000 chr1B 30439167 30439716 549 True 828.000000 828 93.863000 576 1126 1 chr1B.!!$R1 550
16 TraesCS1D01G410000 chr7D 104218863 104219671 808 True 850.000000 850 86.224000 4029 4812 1 chr7D.!!$R2 783
17 TraesCS1D01G410000 chrUn 319353560 319354891 1331 True 646.000000 789 92.845500 576 1466 2 chrUn.!!$R4 890
18 TraesCS1D01G410000 chrUn 235694957 235697794 2837 True 520.600000 789 94.281600 576 2612 5 chrUn.!!$R2 2036
19 TraesCS1D01G410000 chrUn 248755175 248756373 1198 True 406.333333 496 95.319333 1738 2612 3 chrUn.!!$R3 874
20 TraesCS1D01G410000 chr4B 667987658 667988637 979 True 577.500000 761 98.097000 691 2534 2 chr4B.!!$R4 1843
21 TraesCS1D01G410000 chr4B 626513687 626516523 2836 False 515.200000 767 94.245200 576 2609 5 chr4B.!!$F2 2033
22 TraesCS1D01G410000 chr7A 250808349 250808871 522 True 621.000000 621 88.168000 4292 4812 1 chr7A.!!$R1 520
23 TraesCS1D01G410000 chr4A 563488425 563489609 1184 True 378.000000 520 94.495000 1779 2622 3 chr4A.!!$R2 843
24 TraesCS1D01G410000 chr6B 16973783 16974426 643 False 375.500000 460 87.696500 2828 3503 2 chr6B.!!$F2 675
25 TraesCS1D01G410000 chr6D 9150121 9150724 603 False 334.000000 339 86.249000 2775 3450 2 chr6D.!!$F3 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 2.568956 TGAAGATCTGCTTGTACTGCCT 59.431 45.455 1.43 0.00 36.83 4.75 F
928 1231 4.021102 ACTTGTGATTTGGACCGATCTT 57.979 40.909 8.60 0.00 0.00 2.40 F
2198 4404 2.426381 CAACTACTCCCTCCGTCCTAAC 59.574 54.545 0.00 0.00 0.00 2.34 F
2801 7633 0.109342 CGAGCTGGGCCCATCTTTAT 59.891 55.000 28.48 7.24 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 2925 4.553330 AGATTAGGCGAGAACCTTTCAA 57.447 40.909 0.0 0.0 41.50 2.69 R
2802 7634 1.840635 GAGGAGCTGTTCTATTGGGGT 59.159 52.381 0.0 0.0 0.00 4.95 R
3465 8368 1.084289 ATCGCAGGCTAAACCGTTTC 58.916 50.000 0.0 0.0 46.52 2.78 R
4757 9707 5.052304 CGAATAACAGTAAGATCACTCACGC 60.052 44.000 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 2.568956 TGAAGATCTGCTTGTACTGCCT 59.431 45.455 1.43 0.00 36.83 4.75
317 319 7.920160 TCATATGTGCTGAATTTTACTGTCA 57.080 32.000 1.90 0.00 0.00 3.58
629 927 6.292865 GCGCAGTAATGATATTTGCTTACAGA 60.293 38.462 0.30 0.00 32.80 3.41
887 1188 6.940298 TCTTCTGTTCCTTACCGAAAAATCAT 59.060 34.615 0.00 0.00 30.87 2.45
926 1229 7.730364 ATAATACTTGTGATTTGGACCGATC 57.270 36.000 1.65 1.65 0.00 3.69
928 1231 4.021102 ACTTGTGATTTGGACCGATCTT 57.979 40.909 8.60 0.00 0.00 2.40
1335 2558 6.575267 TGCACAATAAGATAAATGCTGCATT 58.425 32.000 21.48 21.48 35.39 3.56
1506 2925 9.912634 GCATAATTAATACTTGCATTACATGGT 57.087 29.630 0.00 0.00 33.58 3.55
2126 4332 8.662781 TGTAGATTGGTAAATCATACTTCAGC 57.337 34.615 1.64 0.00 44.05 4.26
2198 4404 2.426381 CAACTACTCCCTCCGTCCTAAC 59.574 54.545 0.00 0.00 0.00 2.34
2627 7430 9.814899 CATCAGAGAATGTACTAAGATCAAAGT 57.185 33.333 0.00 0.00 0.00 2.66
2801 7633 0.109342 CGAGCTGGGCCCATCTTTAT 59.891 55.000 28.48 7.24 0.00 1.40
2802 7634 1.347707 CGAGCTGGGCCCATCTTTATA 59.652 52.381 28.48 1.23 0.00 0.98
2813 7645 5.222254 GGCCCATCTTTATACCCCAATAGAA 60.222 44.000 0.00 0.00 0.00 2.10
3016 7881 0.679002 CGGAGGTACTGACGGGAGAA 60.679 60.000 0.00 0.00 41.55 2.87
3049 7919 1.071605 GACTGACAAGTCCACGATGC 58.928 55.000 0.00 0.00 46.15 3.91
3109 7986 0.514691 GCTCTGTTTGCTTGAGACCG 59.485 55.000 0.00 0.00 0.00 4.79
3155 8056 2.346766 TGTGTTGAACTGGTGCAGAT 57.653 45.000 0.00 0.00 35.18 2.90
3215 8116 1.209261 TCTGTTGAACTGGTGCAGACA 59.791 47.619 2.37 0.00 35.18 3.41
3313 8216 9.405587 GTCTGTTACAGATCTCTATTATTCTGC 57.594 37.037 18.52 0.00 42.73 4.26
3479 8382 3.557824 CGCGAAACGGTTTAGCCT 58.442 55.556 25.82 0.00 37.91 4.58
3501 8404 6.305638 GCCTGCGATTTAAAACTTTGACTAAG 59.694 38.462 0.00 0.00 39.87 2.18
3503 8406 8.237267 CCTGCGATTTAAAACTTTGACTAAGAT 58.763 33.333 3.56 0.00 37.30 2.40
4757 9707 5.236282 TCAGTAGTATCGATCTAGGGTTCG 58.764 45.833 0.00 4.83 36.39 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
317 319 3.633986 GCTGGATCCGATCTCCAATTTTT 59.366 43.478 7.39 0.00 42.12 1.94
697 995 6.319658 CACTCAAGTTAATGGGATAAGCACAT 59.680 38.462 0.00 0.00 44.30 3.21
1506 2925 4.553330 AGATTAGGCGAGAACCTTTCAA 57.447 40.909 0.00 0.00 41.50 2.69
2126 4332 5.695851 ACTATTCTTGCAGGTCAAAACAG 57.304 39.130 0.00 0.00 33.65 3.16
2339 4547 4.265206 AAGCAACACCAGCAGCTT 57.735 50.000 0.00 0.00 42.06 3.74
2801 7633 3.039011 GAGGAGCTGTTCTATTGGGGTA 58.961 50.000 0.00 0.00 0.00 3.69
2802 7634 1.840635 GAGGAGCTGTTCTATTGGGGT 59.159 52.381 0.00 0.00 0.00 4.95
2966 7831 1.519455 GATCCTTCGTCACCGCCTG 60.519 63.158 0.00 0.00 0.00 4.85
3049 7919 2.034812 GCGTACTAGGAGTTGGAGATGG 59.965 54.545 0.00 0.00 0.00 3.51
3109 7986 1.537202 GACCACCATTTCAGCACTCAC 59.463 52.381 0.00 0.00 0.00 3.51
3155 8056 3.758023 CAGCAACACCACATCCATTAAGA 59.242 43.478 0.00 0.00 0.00 2.10
3215 8116 6.998074 TCACCAGTTCAACTTAATGTCTCAAT 59.002 34.615 0.00 0.00 0.00 2.57
3465 8368 1.084289 ATCGCAGGCTAAACCGTTTC 58.916 50.000 0.00 0.00 46.52 2.78
3501 8404 9.624697 CAAAATCTCTAGCATCTAGACTGTATC 57.375 37.037 0.00 0.00 0.00 2.24
3503 8406 7.068716 TGCAAAATCTCTAGCATCTAGACTGTA 59.931 37.037 0.00 0.00 31.05 2.74
3912 8836 6.016024 TCTGCAATTTATTACTGATGCCCATC 60.016 38.462 1.35 1.35 38.29 3.51
4757 9707 5.052304 CGAATAACAGTAAGATCACTCACGC 60.052 44.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.