Multiple sequence alignment - TraesCS1D01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G409700 chr1D 100.000 6025 0 0 730 6754 471590603 471596627 0.000000e+00 11127.0
1 TraesCS1D01G409700 chr1D 100.000 318 0 0 1 318 471589874 471590191 7.550000e-164 588.0
2 TraesCS1D01G409700 chr1D 90.850 153 13 1 3807 3959 7349855 7349704 3.190000e-48 204.0
3 TraesCS1D01G409700 chr1D 90.000 160 13 2 3803 3959 108261701 108261542 3.190000e-48 204.0
4 TraesCS1D01G409700 chr1D 84.694 98 8 4 6287 6378 249030407 249030311 2.590000e-14 91.6
5 TraesCS1D01G409700 chr1D 80.583 103 19 1 126 227 276745274 276745376 2.020000e-10 78.7
6 TraesCS1D01G409700 chr1D 88.525 61 6 1 3735 3795 22428319 22428260 9.400000e-09 73.1
7 TraesCS1D01G409700 chr1B 92.247 1651 110 9 4053 5695 655762903 655764543 0.000000e+00 2324.0
8 TraesCS1D01G409700 chr1B 90.891 988 56 9 2631 3584 655761739 655762726 0.000000e+00 1295.0
9 TraesCS1D01G409700 chr1B 89.637 936 47 21 1136 2046 655759769 655760679 0.000000e+00 1146.0
10 TraesCS1D01G409700 chr1B 88.023 860 63 18 5902 6754 655764965 655765791 0.000000e+00 981.0
11 TraesCS1D01G409700 chr1B 90.409 563 23 8 2077 2632 655761038 655761576 0.000000e+00 712.0
12 TraesCS1D01G409700 chr1B 91.417 501 31 4 2316 2807 132928461 132927964 0.000000e+00 676.0
13 TraesCS1D01G409700 chr1B 95.327 321 12 3 1 318 655758380 655758700 2.170000e-139 507.0
14 TraesCS1D01G409700 chr1B 80.392 357 37 13 732 1059 655758982 655759334 2.430000e-59 241.0
15 TraesCS1D01G409700 chr1B 93.548 62 4 0 3677 3738 625153091 625153030 7.210000e-15 93.5
16 TraesCS1D01G409700 chr1B 97.619 42 1 0 5841 5882 655764850 655764891 9.400000e-09 73.1
17 TraesCS1D01G409700 chr1A 93.166 1434 63 11 2077 3478 565991767 565993197 0.000000e+00 2073.0
18 TraesCS1D01G409700 chr1A 89.050 1105 83 16 4046 5145 565993550 565994621 0.000000e+00 1336.0
19 TraesCS1D01G409700 chr1A 89.247 837 56 13 878 1694 565990306 565991128 0.000000e+00 1016.0
20 TraesCS1D01G409700 chr1A 92.284 648 36 9 5168 5813 565995178 565995813 0.000000e+00 907.0
21 TraesCS1D01G409700 chr1A 89.488 723 53 10 6041 6754 565996192 565996900 0.000000e+00 893.0
22 TraesCS1D01G409700 chr1A 95.031 322 12 4 1 318 565989614 565989935 2.810000e-138 503.0
23 TraesCS1D01G409700 chr1A 92.581 310 23 0 1770 2079 565991117 565991426 4.810000e-121 446.0
24 TraesCS1D01G409700 chr1A 86.747 166 22 0 3794 3959 385659122 385659287 1.160000e-42 185.0
25 TraesCS1D01G409700 chr1A 77.711 332 48 4 1361 1690 566311518 566311825 5.380000e-41 180.0
26 TraesCS1D01G409700 chr1A 86.029 136 10 5 3550 3676 565993227 565993362 3.280000e-28 137.0
27 TraesCS1D01G409700 chr1A 77.586 232 45 7 2 228 586688620 586688849 4.250000e-27 134.0
28 TraesCS1D01G409700 chr1A 83.962 106 10 4 6280 6378 298603592 298603697 2.010000e-15 95.3
29 TraesCS1D01G409700 chr1A 94.915 59 3 0 3677 3735 500986325 500986383 7.210000e-15 93.5
30 TraesCS1D01G409700 chr1A 91.176 68 6 0 3948 4015 565993483 565993550 7.210000e-15 93.5
31 TraesCS1D01G409700 chr2B 90.514 506 33 6 2313 2807 682179630 682180131 0.000000e+00 654.0
32 TraesCS1D01G409700 chr5A 90.060 503 37 6 2313 2807 437405592 437406089 2.050000e-179 640.0
33 TraesCS1D01G409700 chr5A 90.909 154 14 0 3807 3960 86662019 86662172 2.470000e-49 207.0
34 TraesCS1D01G409700 chr5A 86.957 161 20 1 3799 3959 368554857 368554698 5.380000e-41 180.0
35 TraesCS1D01G409700 chr5A 86.503 163 20 1 3796 3958 290387279 290387439 1.940000e-40 178.0
36 TraesCS1D01G409700 chr3A 90.187 214 19 2 2265 2477 648015345 648015133 1.860000e-70 278.0
37 TraesCS1D01G409700 chr3A 86.239 109 13 2 3676 3784 456381786 456381680 4.280000e-22 117.0
38 TraesCS1D01G409700 chr3D 92.208 154 12 0 3807 3960 447584296 447584143 1.140000e-52 219.0
39 TraesCS1D01G409700 chr3D 87.425 167 19 2 3799 3965 67481126 67480962 2.490000e-44 191.0
40 TraesCS1D01G409700 chr2D 91.667 156 13 0 3804 3959 122864266 122864111 4.100000e-52 217.0
41 TraesCS1D01G409700 chr2D 87.578 161 19 1 3799 3959 617101054 617101213 1.160000e-42 185.0
42 TraesCS1D01G409700 chr2D 90.099 101 9 1 3684 3784 78690762 78690663 5.500000e-26 130.0
43 TraesCS1D01G409700 chr2D 88.333 60 5 2 3735 3794 592288552 592288609 3.380000e-08 71.3
44 TraesCS1D01G409700 chr7D 90.683 161 15 0 3799 3959 34757026 34756866 1.480000e-51 215.0
45 TraesCS1D01G409700 chr7D 86.957 161 21 0 3799 3959 34373310 34373470 1.500000e-41 182.0
46 TraesCS1D01G409700 chr7D 92.593 54 2 2 3735 3787 494608798 494608746 7.260000e-10 76.8
47 TraesCS1D01G409700 chr7D 87.879 66 6 2 3735 3799 510397806 510397742 7.260000e-10 76.8
48 TraesCS1D01G409700 chr7D 91.489 47 3 1 3751 3797 602072212 602072257 5.650000e-06 63.9
49 TraesCS1D01G409700 chr4B 90.968 155 14 0 3805 3959 106227407 106227561 6.860000e-50 209.0
50 TraesCS1D01G409700 chr4B 93.750 64 4 0 3675 3738 104337416 104337353 5.580000e-16 97.1
51 TraesCS1D01G409700 chr7B 90.909 154 13 1 3807 3959 453623443 453623290 8.880000e-49 206.0
52 TraesCS1D01G409700 chr4A 90.850 153 14 0 3807 3959 363744551 363744703 8.880000e-49 206.0
53 TraesCS1D01G409700 chr4A 88.199 161 18 1 3799 3959 690411282 690411441 2.490000e-44 191.0
54 TraesCS1D01G409700 chr4D 86.585 164 20 2 3798 3960 341693242 341693404 5.380000e-41 180.0
55 TraesCS1D01G409700 chr4D 94.828 58 3 0 3677 3734 213708412 213708355 2.590000e-14 91.6
56 TraesCS1D01G409700 chr4D 85.057 87 6 4 6297 6376 34660030 34659944 1.560000e-11 82.4
57 TraesCS1D01G409700 chr6A 86.239 109 9 3 3677 3785 591435579 591435681 5.540000e-21 113.0
58 TraesCS1D01G409700 chr6A 93.333 60 4 0 3676 3735 588944576 588944635 9.330000e-14 89.8
59 TraesCS1D01G409700 chr3B 75.510 245 52 8 1 240 794399764 794399523 5.540000e-21 113.0
60 TraesCS1D01G409700 chr7A 81.579 114 13 7 3675 3784 125469169 125469278 3.360000e-13 87.9
61 TraesCS1D01G409700 chr7A 88.571 70 4 2 6305 6370 632520575 632520644 1.560000e-11 82.4
62 TraesCS1D01G409700 chr6D 94.545 55 2 1 3734 3788 444453348 444453295 4.340000e-12 84.2
63 TraesCS1D01G409700 chr2A 88.732 71 4 2 6305 6371 694471516 694471446 4.340000e-12 84.2
64 TraesCS1D01G409700 chr2A 74.302 179 39 7 13 187 669503152 669502977 1.220000e-07 69.4
65 TraesCS1D01G409700 chr5D 85.714 77 7 2 6304 6376 319690019 319689943 2.020000e-10 78.7
66 TraesCS1D01G409700 chr5D 74.719 178 36 8 13 184 32744081 32744255 3.380000e-08 71.3
67 TraesCS1D01G409700 chr5B 81.000 100 11 5 6280 6372 681344996 681345094 9.400000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G409700 chr1D 471589874 471596627 6753 False 5857.500000 11127 100.000000 1 6754 2 chr1D.!!$F2 6753
1 TraesCS1D01G409700 chr1B 655758380 655765791 7411 False 909.887500 2324 90.568125 1 6754 8 chr1B.!!$F1 6753
2 TraesCS1D01G409700 chr1A 565989614 565996900 7286 False 822.722222 2073 90.894667 1 6754 9 chr1A.!!$F6 6753
3 TraesCS1D01G409700 chr2B 682179630 682180131 501 False 654.000000 654 90.514000 2313 2807 1 chr2B.!!$F1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 201 0.393537 CAAGAAGCTACCTGGGCCAG 60.394 60.000 27.04 27.04 0.00 4.85 F
1528 2010 0.463474 GAAGATGCAGGTCAGGGAGC 60.463 60.000 0.00 0.00 0.00 4.70 F
1969 2451 0.696501 TCACCCCCTAAGTTTCTGGC 59.303 55.000 0.00 0.00 0.00 4.85 F
3002 4006 0.242825 TCGTCGCCCTGTTCACTAAG 59.757 55.000 0.00 0.00 0.00 2.18 F
3045 4049 1.066573 ACAGTTCCAGAATGCTCCTCG 60.067 52.381 0.00 0.00 31.97 4.63 F
4056 5109 0.322546 CCCCTGTTAGTTCCACCTGC 60.323 60.000 0.00 0.00 0.00 4.85 F
5261 6860 0.531200 GTCTGGAACCGGTACCTGAG 59.469 60.000 8.00 0.00 35.45 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2310 0.039437 TCTTCACGAGAACAGCCGAC 60.039 55.000 0.00 0.00 0.00 4.79 R
2982 3986 0.242825 TTAGTGAACAGGGCGACGAG 59.757 55.000 0.00 0.00 0.00 4.18 R
3025 4029 1.066573 CGAGGAGCATTCTGGAACTGT 60.067 52.381 0.00 0.00 0.00 3.55 R
4037 5090 0.322546 GCAGGTGGAACTAACAGGGG 60.323 60.000 0.00 0.00 36.74 4.79 R
4752 5810 0.394565 AGGACAGACTGACAACTGGC 59.605 55.000 10.08 9.49 40.98 4.85 R
5315 6914 0.179089 CACCGAAGAGCAGAGGATGG 60.179 60.000 0.00 0.00 0.00 3.51 R
6716 8604 2.827921 TGAGAAGTATCAGCTCAGCACA 59.172 45.455 0.00 0.00 34.02 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 0.610232 CCACAAGCCTCTCAAAGGGG 60.610 60.000 0.00 0.00 46.32 4.79
196 199 1.750780 GCAAGAAGCTACCTGGGCC 60.751 63.158 0.00 0.00 41.15 5.80
198 201 0.393537 CAAGAAGCTACCTGGGCCAG 60.394 60.000 27.04 27.04 0.00 4.85
212 215 1.700955 GGCCAGAATCTTCCATGCAT 58.299 50.000 0.00 0.00 0.00 3.96
311 315 1.417517 ACAGATCTTGACAGGCACACA 59.582 47.619 0.00 0.00 0.00 3.72
312 316 1.802960 CAGATCTTGACAGGCACACAC 59.197 52.381 0.00 0.00 0.00 3.82
315 319 1.152984 CTTGACAGGCACACACCCA 60.153 57.895 0.00 0.00 0.00 4.51
316 320 1.447317 CTTGACAGGCACACACCCAC 61.447 60.000 0.00 0.00 0.00 4.61
317 321 1.920734 TTGACAGGCACACACCCACT 61.921 55.000 0.00 0.00 0.00 4.00
776 780 8.902540 GGAACCTTTTAGGACAAATGAAAAAT 57.097 30.769 0.00 0.00 37.67 1.82
777 781 8.773645 GGAACCTTTTAGGACAAATGAAAAATG 58.226 33.333 0.00 0.00 37.67 2.32
778 782 9.325198 GAACCTTTTAGGACAAATGAAAAATGT 57.675 29.630 0.00 0.00 37.67 2.71
810 836 5.348259 TTGGAAAATCCCCTCTTTACCTT 57.652 39.130 0.00 0.00 35.03 3.50
843 869 9.223099 TGTATATCCATGCTCTTCACATTATTG 57.777 33.333 0.00 0.00 0.00 1.90
907 983 2.939103 CCTTTAAAGGTCTGATCGGCAG 59.061 50.000 23.89 0.48 41.41 4.85
937 1013 0.671163 GCCCAACCACATGCATGTTG 60.671 55.000 29.48 27.02 39.39 3.33
1226 1690 2.429351 GCAGCACGAAGACGACGAG 61.429 63.158 0.00 0.00 42.66 4.18
1227 1691 1.797933 CAGCACGAAGACGACGAGG 60.798 63.158 0.00 0.00 42.66 4.63
1241 1705 0.705253 ACGAGGAGGAGGAGGAAGAA 59.295 55.000 0.00 0.00 0.00 2.52
1259 1723 3.358118 AGAAGAAGAAGAGGAGTACGGG 58.642 50.000 0.00 0.00 0.00 5.28
1410 1891 2.025155 CTCTTCTAGGCGAGCTTGGTA 58.975 52.381 2.37 0.00 0.00 3.25
1420 1901 2.221981 GCGAGCTTGGTATGATGCTAAC 59.778 50.000 2.37 0.00 35.76 2.34
1432 1913 0.739813 ATGCTAACTGGCGGTCGAAC 60.740 55.000 0.00 0.00 34.52 3.95
1528 2010 0.463474 GAAGATGCAGGTCAGGGAGC 60.463 60.000 0.00 0.00 0.00 4.70
1545 2027 2.440430 CTCGAGCTCCTTCGGGGA 60.440 66.667 8.47 0.00 42.77 4.81
1639 2121 1.985473 TGCATTTCTGTGCCTGAGTT 58.015 45.000 0.00 0.00 44.43 3.01
1659 2141 9.868277 CTGAGTTACTTGTTATCTCTGAATCTT 57.132 33.333 0.00 0.00 31.59 2.40
1683 2165 3.574826 GGGTCTGAAGAACTAGTCACAGT 59.425 47.826 0.00 0.00 35.67 3.55
1690 2172 4.522722 AGAACTAGTCACAGTGTTAGCC 57.477 45.455 0.00 1.41 0.00 3.93
1691 2173 4.153411 AGAACTAGTCACAGTGTTAGCCT 58.847 43.478 0.00 3.38 0.00 4.58
1692 2174 4.218852 AGAACTAGTCACAGTGTTAGCCTC 59.781 45.833 0.00 5.33 0.00 4.70
1693 2175 2.826725 ACTAGTCACAGTGTTAGCCTCC 59.173 50.000 0.00 0.00 0.00 4.30
1694 2176 0.977395 AGTCACAGTGTTAGCCTCCC 59.023 55.000 0.00 0.00 0.00 4.30
1702 2184 4.024670 CAGTGTTAGCCTCCCTAGTTAGT 58.975 47.826 0.00 0.00 0.00 2.24
1710 2192 3.451540 GCCTCCCTAGTTAGTAGCAAAGT 59.548 47.826 0.00 0.00 0.00 2.66
1717 2199 9.662947 TCCCTAGTTAGTAGCAAAGTTTAATTC 57.337 33.333 0.00 0.00 0.00 2.17
1728 2210 6.206634 AGCAAAGTTTAATTCATGGAACGAGA 59.793 34.615 0.00 0.00 0.00 4.04
1733 2215 8.335532 AGTTTAATTCATGGAACGAGAATTCA 57.664 30.769 8.44 0.00 41.27 2.57
1742 2224 6.145338 TGGAACGAGAATTCATAGGTAGAC 57.855 41.667 8.44 0.00 0.00 2.59
1749 2231 8.788806 ACGAGAATTCATAGGTAGACAATCTAG 58.211 37.037 8.44 0.00 28.01 2.43
1750 2232 7.753132 CGAGAATTCATAGGTAGACAATCTAGC 59.247 40.741 8.44 6.90 45.19 3.42
1758 2240 5.692613 GGTAGACAATCTAGCTGTCGTAT 57.307 43.478 15.18 5.30 46.38 3.06
1759 2241 5.453648 GGTAGACAATCTAGCTGTCGTATG 58.546 45.833 15.18 0.00 46.38 2.39
1760 2242 4.576216 AGACAATCTAGCTGTCGTATGG 57.424 45.455 15.18 0.00 46.38 2.74
1761 2243 3.319405 AGACAATCTAGCTGTCGTATGGG 59.681 47.826 15.18 0.00 46.38 4.00
1762 2244 3.031736 ACAATCTAGCTGTCGTATGGGT 58.968 45.455 0.00 0.00 0.00 4.51
1763 2245 3.451178 ACAATCTAGCTGTCGTATGGGTT 59.549 43.478 0.00 0.00 0.00 4.11
1786 2268 6.670695 TGCTATATGGTTAGCTTCTGATGA 57.329 37.500 0.00 0.00 44.03 2.92
1828 2310 1.152881 GGCCAGGCAGATAGTTGGG 60.153 63.158 15.19 0.00 0.00 4.12
1969 2451 0.696501 TCACCCCCTAAGTTTCTGGC 59.303 55.000 0.00 0.00 0.00 4.85
1990 2472 3.544285 GCGTGTTTCGTTTGTTCATTTCA 59.456 39.130 0.00 0.00 42.13 2.69
1991 2473 4.316377 GCGTGTTTCGTTTGTTCATTTCAG 60.316 41.667 0.00 0.00 42.13 3.02
1996 2478 6.748198 TGTTTCGTTTGTTCATTTCAGTTACC 59.252 34.615 0.00 0.00 0.00 2.85
2030 2512 5.939883 CCACATCATGAGTAAGGTGAAAAGA 59.060 40.000 0.09 0.00 0.00 2.52
2037 2519 5.123227 TGAGTAAGGTGAAAAGAACAGTGG 58.877 41.667 0.00 0.00 0.00 4.00
2042 2524 5.568620 AGGTGAAAAGAACAGTGGTATCT 57.431 39.130 0.00 0.00 0.00 1.98
2045 2527 5.347907 GGTGAAAAGAACAGTGGTATCTACG 59.652 44.000 0.00 0.00 0.00 3.51
2047 2529 6.089150 GTGAAAAGAACAGTGGTATCTACGTC 59.911 42.308 0.00 0.00 0.00 4.34
2210 3040 3.117131 AGGTCTTCAATTTTGGAGGTGGT 60.117 43.478 0.00 0.00 34.44 4.16
2449 3279 1.404479 ATGGTTAGGTCCGCGCCATA 61.404 55.000 9.96 0.00 38.08 2.74
2523 3356 5.669477 AGAACATGTCTGATCTAAAGAGCC 58.331 41.667 0.00 0.00 33.17 4.70
2525 3358 5.021033 ACATGTCTGATCTAAAGAGCCAG 57.979 43.478 0.00 6.06 33.07 4.85
2535 3368 6.541278 TGATCTAAAGAGCCAGAATGTTGATG 59.459 38.462 0.00 0.00 0.00 3.07
2539 3372 1.133790 GAGCCAGAATGTTGATGCCAC 59.866 52.381 0.00 0.00 0.00 5.01
2807 3811 2.780010 ACAGGGTCATATTCTGGAAGGG 59.220 50.000 0.00 0.00 33.19 3.95
2922 3926 1.523758 CAAGCAGGTTGACAGGTACC 58.476 55.000 6.49 2.73 38.60 3.34
2945 3949 2.574369 ACTGTGGATTCCCGTTATTCCA 59.426 45.455 0.00 0.00 35.93 3.53
2966 3970 5.774690 TCCATGTCTTGCCAAAGTATTTTCT 59.225 36.000 0.00 0.00 35.03 2.52
2967 3971 5.865552 CCATGTCTTGCCAAAGTATTTTCTG 59.134 40.000 0.00 0.00 35.03 3.02
2982 3986 7.311408 AGTATTTTCTGAAGAAGCTGATTTGC 58.689 34.615 0.00 0.00 35.21 3.68
2985 3989 2.998670 TCTGAAGAAGCTGATTTGCTCG 59.001 45.455 0.00 0.00 43.24 5.03
2988 3992 1.354040 AGAAGCTGATTTGCTCGTCG 58.646 50.000 0.00 0.00 43.24 5.12
2989 3993 0.247458 GAAGCTGATTTGCTCGTCGC 60.247 55.000 0.00 0.00 43.24 5.19
2991 3995 3.093278 CTGATTTGCTCGTCGCCC 58.907 61.111 0.00 0.00 38.05 6.13
2992 3996 1.448540 CTGATTTGCTCGTCGCCCT 60.449 57.895 0.00 0.00 38.05 5.19
3002 4006 0.242825 TCGTCGCCCTGTTCACTAAG 59.757 55.000 0.00 0.00 0.00 2.18
3045 4049 1.066573 ACAGTTCCAGAATGCTCCTCG 60.067 52.381 0.00 0.00 31.97 4.63
3095 4116 4.764050 TTTGGTGAAACTGTCCTGAGTA 57.236 40.909 0.00 0.00 36.74 2.59
3170 4194 5.003804 TCAAAGAATGTTCTAGCCAACTCC 58.996 41.667 0.00 0.00 36.28 3.85
3242 4266 5.259632 CATGGAGAGAAAGGGAAGAATGTT 58.740 41.667 0.00 0.00 0.00 2.71
3250 4274 7.445707 AGAGAAAGGGAAGAATGTTTTCAGTAC 59.554 37.037 0.00 0.00 34.08 2.73
3272 4296 4.819630 ACTGAATTTAGCAAAGGTCGTGAA 59.180 37.500 0.00 0.00 0.00 3.18
3281 4305 3.365364 GCAAAGGTCGTGAAATCCTTCAG 60.365 47.826 0.00 0.00 42.27 3.02
3320 4344 4.890088 TCGTACTTGTTACAAATGGCTCT 58.110 39.130 0.00 0.00 0.00 4.09
3404 4428 7.232910 TGAAGGTATGCATTATTCATGATGGA 58.767 34.615 3.54 0.00 34.31 3.41
3508 4539 9.941325 TCATTTAAAATTTTATGACCATGCTGT 57.059 25.926 11.33 0.00 0.00 4.40
3580 4621 9.542462 TGAAGAACATAATAATCGTAGGAAAGG 57.458 33.333 0.00 0.00 0.00 3.11
3597 4650 1.884235 AGGTTGTTCGCTCTTCCTTG 58.116 50.000 0.00 0.00 0.00 3.61
3626 4679 5.422214 AGGTCGATCAATGTCCTTTACTT 57.578 39.130 0.00 0.00 0.00 2.24
3643 4696 6.473455 CCTTTACTTCTGAAGTTTTTGTGCTG 59.527 38.462 26.33 8.33 42.81 4.41
3645 4698 7.618502 TTACTTCTGAAGTTTTTGTGCTGTA 57.381 32.000 26.33 3.00 42.81 2.74
3646 4699 6.509418 ACTTCTGAAGTTTTTGTGCTGTAA 57.491 33.333 17.00 0.00 39.04 2.41
3676 4729 7.781693 ACTATTCAGGAATATGCTTTGGTGAAT 59.218 33.333 2.43 0.00 37.24 2.57
3677 4730 9.288576 CTATTCAGGAATATGCTTTGGTGAATA 57.711 33.333 2.43 0.00 35.55 1.75
3678 4731 6.942532 TCAGGAATATGCTTTGGTGAATAC 57.057 37.500 0.00 0.00 0.00 1.89
3679 4732 6.662755 TCAGGAATATGCTTTGGTGAATACT 58.337 36.000 0.00 0.00 0.00 2.12
3680 4733 6.767902 TCAGGAATATGCTTTGGTGAATACTC 59.232 38.462 0.00 0.00 0.00 2.59
3681 4734 6.769822 CAGGAATATGCTTTGGTGAATACTCT 59.230 38.462 0.00 0.00 0.00 3.24
3682 4735 6.995091 AGGAATATGCTTTGGTGAATACTCTC 59.005 38.462 0.00 0.00 0.00 3.20
3683 4736 6.995091 GGAATATGCTTTGGTGAATACTCTCT 59.005 38.462 0.00 0.00 0.00 3.10
3684 4737 7.172361 GGAATATGCTTTGGTGAATACTCTCTC 59.828 40.741 0.00 0.00 0.00 3.20
3685 4738 4.207891 TGCTTTGGTGAATACTCTCTCC 57.792 45.455 0.00 0.00 0.00 3.71
3686 4739 3.840666 TGCTTTGGTGAATACTCTCTCCT 59.159 43.478 0.00 0.00 31.49 3.69
3687 4740 4.287067 TGCTTTGGTGAATACTCTCTCCTT 59.713 41.667 0.00 0.00 31.49 3.36
3688 4741 4.873259 GCTTTGGTGAATACTCTCTCCTTC 59.127 45.833 0.00 0.00 31.49 3.46
3689 4742 5.422214 TTTGGTGAATACTCTCTCCTTCC 57.578 43.478 0.00 0.00 31.49 3.46
3690 4743 3.375699 TGGTGAATACTCTCTCCTTCCC 58.624 50.000 0.00 0.00 31.49 3.97
3691 4744 3.245984 TGGTGAATACTCTCTCCTTCCCA 60.246 47.826 0.00 0.00 31.49 4.37
3692 4745 3.970640 GGTGAATACTCTCTCCTTCCCAT 59.029 47.826 0.00 0.00 0.00 4.00
3693 4746 5.148502 GGTGAATACTCTCTCCTTCCCATA 58.851 45.833 0.00 0.00 0.00 2.74
3694 4747 5.602978 GGTGAATACTCTCTCCTTCCCATAA 59.397 44.000 0.00 0.00 0.00 1.90
3695 4748 6.271159 GGTGAATACTCTCTCCTTCCCATAAT 59.729 42.308 0.00 0.00 0.00 1.28
3696 4749 7.455008 GGTGAATACTCTCTCCTTCCCATAATA 59.545 40.741 0.00 0.00 0.00 0.98
3697 4750 9.041354 GTGAATACTCTCTCCTTCCCATAATAT 57.959 37.037 0.00 0.00 0.00 1.28
3702 4755 8.893563 ACTCTCTCCTTCCCATAATATAAGAG 57.106 38.462 0.00 0.00 33.36 2.85
3703 4756 8.461033 ACTCTCTCCTTCCCATAATATAAGAGT 58.539 37.037 0.00 0.00 35.12 3.24
3704 4757 8.657387 TCTCTCCTTCCCATAATATAAGAGTG 57.343 38.462 0.00 0.00 31.80 3.51
3705 4758 8.235230 TCTCTCCTTCCCATAATATAAGAGTGT 58.765 37.037 0.00 0.00 31.80 3.55
3706 4759 8.798975 TCTCCTTCCCATAATATAAGAGTGTT 57.201 34.615 0.00 0.00 0.00 3.32
3707 4760 9.225682 TCTCCTTCCCATAATATAAGAGTGTTT 57.774 33.333 0.00 0.00 0.00 2.83
3708 4761 9.853177 CTCCTTCCCATAATATAAGAGTGTTTT 57.147 33.333 0.00 0.00 0.00 2.43
3713 4766 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
3733 4786 7.862741 TGACACTAGTGTAGTATCAAAAACG 57.137 36.000 27.98 0.00 39.11 3.60
3734 4787 6.364165 TGACACTAGTGTAGTATCAAAAACGC 59.636 38.462 27.98 11.00 39.11 4.84
3735 4788 6.218019 ACACTAGTGTAGTATCAAAAACGCA 58.782 36.000 26.91 0.00 42.90 5.24
3736 4789 6.145048 ACACTAGTGTAGTATCAAAAACGCAC 59.855 38.462 26.91 0.00 42.90 5.34
3737 4790 6.365247 CACTAGTGTAGTATCAAAAACGCACT 59.635 38.462 15.06 0.00 39.46 4.40
3738 4791 7.539710 CACTAGTGTAGTATCAAAAACGCACTA 59.460 37.037 15.06 0.00 38.22 2.74
3739 4792 6.946229 AGTGTAGTATCAAAAACGCACTAG 57.054 37.500 0.00 0.00 36.73 2.57
3740 4793 6.453092 AGTGTAGTATCAAAAACGCACTAGT 58.547 36.000 0.00 0.00 36.73 2.57
3741 4794 6.365247 AGTGTAGTATCAAAAACGCACTAGTG 59.635 38.462 18.93 18.93 36.73 2.74
3742 4795 6.145048 GTGTAGTATCAAAAACGCACTAGTGT 59.855 38.462 23.44 2.22 40.99 3.55
3743 4796 7.326789 GTGTAGTATCAAAAACGCACTAGTGTA 59.673 37.037 23.44 2.57 37.54 2.90
3744 4797 6.946229 AGTATCAAAAACGCACTAGTGTAG 57.054 37.500 23.44 19.10 37.54 2.74
3745 4798 6.453092 AGTATCAAAAACGCACTAGTGTAGT 58.547 36.000 23.44 19.71 37.54 2.73
3746 4799 7.596494 AGTATCAAAAACGCACTAGTGTAGTA 58.404 34.615 23.44 9.45 37.54 1.82
3747 4800 8.248945 AGTATCAAAAACGCACTAGTGTAGTAT 58.751 33.333 23.44 14.80 37.54 2.12
3748 4801 9.507280 GTATCAAAAACGCACTAGTGTAGTATA 57.493 33.333 23.44 13.99 37.54 1.47
3749 4802 8.991243 ATCAAAAACGCACTAGTGTAGTATAA 57.009 30.769 23.44 9.54 37.54 0.98
3750 4803 8.815141 TCAAAAACGCACTAGTGTAGTATAAA 57.185 30.769 23.44 7.75 37.54 1.40
3751 4804 9.258826 TCAAAAACGCACTAGTGTAGTATAAAA 57.741 29.630 23.44 8.61 37.54 1.52
3752 4805 9.866936 CAAAAACGCACTAGTGTAGTATAAAAA 57.133 29.630 23.44 0.00 37.54 1.94
3776 4829 9.778741 AAAAATGCTCTTATATTATGAGACGGA 57.221 29.630 0.00 0.00 33.20 4.69
3777 4830 8.994429 AAATGCTCTTATATTATGAGACGGAG 57.006 34.615 0.00 0.00 33.20 4.63
3778 4831 6.516739 TGCTCTTATATTATGAGACGGAGG 57.483 41.667 0.00 0.00 33.20 4.30
3779 4832 5.419155 TGCTCTTATATTATGAGACGGAGGG 59.581 44.000 0.00 0.00 33.20 4.30
3780 4833 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
3781 4834 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
3816 4869 7.592736 TGAATTCTAATCTACTACTCCCTCCA 58.407 38.462 7.05 0.00 0.00 3.86
3817 4870 8.235230 TGAATTCTAATCTACTACTCCCTCCAT 58.765 37.037 7.05 0.00 0.00 3.41
3818 4871 9.095700 GAATTCTAATCTACTACTCCCTCCATT 57.904 37.037 0.00 0.00 0.00 3.16
3821 4874 8.937207 TCTAATCTACTACTCCCTCCATTAAC 57.063 38.462 0.00 0.00 0.00 2.01
3822 4875 8.734763 TCTAATCTACTACTCCCTCCATTAACT 58.265 37.037 0.00 0.00 0.00 2.24
3823 4876 7.604657 AATCTACTACTCCCTCCATTAACTG 57.395 40.000 0.00 0.00 0.00 3.16
3827 4880 8.287350 TCTACTACTCCCTCCATTAACTGTTAT 58.713 37.037 0.37 0.00 0.00 1.89
3828 4881 9.584008 CTACTACTCCCTCCATTAACTGTTATA 57.416 37.037 0.37 0.00 0.00 0.98
3829 4882 8.849543 ACTACTCCCTCCATTAACTGTTATAA 57.150 34.615 0.37 0.00 0.00 0.98
3831 4884 7.989947 ACTCCCTCCATTAACTGTTATAAGA 57.010 36.000 0.37 0.00 0.00 2.10
3832 4885 8.568617 ACTCCCTCCATTAACTGTTATAAGAT 57.431 34.615 0.37 0.00 0.00 2.40
3834 4887 8.331931 TCCCTCCATTAACTGTTATAAGATGT 57.668 34.615 0.37 0.00 0.00 3.06
3869 4922 8.988064 TTTCTGATTCGGAAGTATATAGATGC 57.012 34.615 7.92 0.00 29.97 3.91
3870 4923 7.703058 TCTGATTCGGAAGTATATAGATGCA 57.297 36.000 0.00 0.00 0.00 3.96
3871 4924 8.298729 TCTGATTCGGAAGTATATAGATGCAT 57.701 34.615 0.00 0.00 0.00 3.96
3873 4926 9.376075 CTGATTCGGAAGTATATAGATGCATTT 57.624 33.333 0.00 0.00 0.00 2.32
3874 4927 9.725019 TGATTCGGAAGTATATAGATGCATTTT 57.275 29.630 0.00 0.00 0.00 1.82
3878 4931 9.639601 TCGGAAGTATATAGATGCATTTTAGTG 57.360 33.333 0.00 0.00 0.00 2.74
3879 4932 9.424319 CGGAAGTATATAGATGCATTTTAGTGT 57.576 33.333 0.00 0.00 0.00 3.55
3898 4951 6.455360 AGTGTGTTTGTTCACTCATTTCAT 57.545 33.333 0.00 0.00 40.28 2.57
3899 4952 6.866480 AGTGTGTTTGTTCACTCATTTCATT 58.134 32.000 0.00 0.00 40.28 2.57
3900 4953 6.974622 AGTGTGTTTGTTCACTCATTTCATTC 59.025 34.615 0.00 0.00 40.28 2.67
3901 4954 6.198966 GTGTGTTTGTTCACTCATTTCATTCC 59.801 38.462 0.00 0.00 38.90 3.01
3902 4955 5.399301 GTGTTTGTTCACTCATTTCATTCCG 59.601 40.000 0.00 0.00 35.68 4.30
3904 4957 6.261158 TGTTTGTTCACTCATTTCATTCCGTA 59.739 34.615 0.00 0.00 0.00 4.02
3906 4959 6.421377 TGTTCACTCATTTCATTCCGTATG 57.579 37.500 0.00 0.00 35.45 2.39
3907 4960 5.937540 TGTTCACTCATTTCATTCCGTATGT 59.062 36.000 0.00 0.00 35.64 2.29
3909 4962 7.277760 TGTTCACTCATTTCATTCCGTATGTAG 59.722 37.037 0.00 0.00 35.64 2.74
3913 4966 6.127168 ACTCATTTCATTCCGTATGTAGTCCA 60.127 38.462 0.00 0.00 35.64 4.02
3914 4967 6.826668 TCATTTCATTCCGTATGTAGTCCAT 58.173 36.000 0.00 0.00 35.64 3.41
3915 4968 7.958088 TCATTTCATTCCGTATGTAGTCCATA 58.042 34.615 0.00 0.00 35.64 2.74
3916 4969 8.593679 TCATTTCATTCCGTATGTAGTCCATAT 58.406 33.333 0.00 0.00 38.29 1.78
3917 4970 9.219603 CATTTCATTCCGTATGTAGTCCATATT 57.780 33.333 0.00 0.00 38.29 1.28
3918 4971 8.601845 TTTCATTCCGTATGTAGTCCATATTG 57.398 34.615 0.00 0.00 38.29 1.90
3919 4972 7.533289 TCATTCCGTATGTAGTCCATATTGA 57.467 36.000 0.00 0.00 38.29 2.57
3920 4973 7.958088 TCATTCCGTATGTAGTCCATATTGAA 58.042 34.615 0.00 0.00 38.29 2.69
3921 4974 8.425703 TCATTCCGTATGTAGTCCATATTGAAA 58.574 33.333 0.00 0.00 38.29 2.69
3922 4975 9.219603 CATTCCGTATGTAGTCCATATTGAAAT 57.780 33.333 0.00 0.00 38.29 2.17
3926 4979 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
3927 4980 9.869757 CGTATGTAGTCCATATTGAAATATCCA 57.130 33.333 0.00 0.00 38.29 3.41
3951 5004 9.296400 CCAAAACATCTTATATTTGTAAACGGG 57.704 33.333 0.00 0.00 32.29 5.28
3986 5039 6.483640 CACTAAGGATAGAATTTACAGTGGGC 59.516 42.308 0.00 0.00 33.15 5.36
4035 5088 7.852945 GCTACATGTGTATTGAGCTGTAAAATC 59.147 37.037 9.11 0.00 0.00 2.17
4036 5089 7.088589 ACATGTGTATTGAGCTGTAAAATCC 57.911 36.000 0.00 0.00 0.00 3.01
4037 5090 6.095440 ACATGTGTATTGAGCTGTAAAATCCC 59.905 38.462 0.00 0.00 0.00 3.85
4038 5091 4.947388 TGTGTATTGAGCTGTAAAATCCCC 59.053 41.667 0.00 0.00 0.00 4.81
4039 5092 4.338400 GTGTATTGAGCTGTAAAATCCCCC 59.662 45.833 0.00 0.00 0.00 5.40
4056 5109 0.322546 CCCCTGTTAGTTCCACCTGC 60.323 60.000 0.00 0.00 0.00 4.85
4071 5124 3.004315 CCACCTGCAAAAACGACTAATGT 59.996 43.478 0.00 0.00 0.00 2.71
4076 5129 3.378742 TGCAAAAACGACTAATGTGTGGT 59.621 39.130 0.00 0.00 0.00 4.16
4108 5161 6.790285 ATTCATTTTTGTTTGATGCAGGTC 57.210 33.333 0.00 0.00 0.00 3.85
4243 5296 5.355350 GGTACAGTACATTGTCCTACTACGT 59.645 44.000 12.89 0.00 32.56 3.57
4310 5367 4.901881 GTGACTGTACGTTTCCATTTTTCG 59.098 41.667 0.00 0.00 0.00 3.46
4315 5372 5.503498 TGTACGTTTCCATTTTTCGACTTG 58.497 37.500 0.00 0.00 0.00 3.16
4319 5376 6.368213 ACGTTTCCATTTTTCGACTTGATAC 58.632 36.000 0.00 0.00 0.00 2.24
4352 5409 6.500684 TTCATTAGAGTTCACATTCTTGGC 57.499 37.500 0.00 0.00 0.00 4.52
4353 5410 5.559770 TCATTAGAGTTCACATTCTTGGCA 58.440 37.500 0.00 0.00 0.00 4.92
4408 5465 5.804944 ACATTCCACATTGAACATTCCAA 57.195 34.783 0.00 0.00 0.00 3.53
4437 5494 6.091441 AGAGAAGCAGTTACTTTAAGATTGCG 59.909 38.462 0.00 0.00 0.00 4.85
4468 5525 4.599041 TGTATGGAGAACCTGGAATTTGG 58.401 43.478 0.00 0.00 37.04 3.28
4477 5534 3.642141 ACCTGGAATTTGGTCTTGTGTT 58.358 40.909 0.00 0.00 29.18 3.32
4561 5618 9.871299 GACTCTCTTTTGATTTTCAGTCTTAAC 57.129 33.333 0.00 0.00 0.00 2.01
4562 5619 9.620259 ACTCTCTTTTGATTTTCAGTCTTAACT 57.380 29.630 0.00 0.00 35.60 2.24
4564 5621 9.838339 TCTCTTTTGATTTTCAGTCTTAACTCT 57.162 29.630 0.00 0.00 31.71 3.24
4596 5653 1.713078 AGTGGCAAAAGGGGAGAGATT 59.287 47.619 0.00 0.00 0.00 2.40
4598 5655 1.710244 TGGCAAAAGGGGAGAGATTCA 59.290 47.619 0.00 0.00 0.00 2.57
4649 5707 5.923204 TCTTTCTTCTCCAGCATTATCTCC 58.077 41.667 0.00 0.00 0.00 3.71
4695 5753 2.174685 TATGGCCAAGCTCCTCTACA 57.825 50.000 10.96 0.00 0.00 2.74
4705 5763 6.268566 CCAAGCTCCTCTACATTTTTAATGC 58.731 40.000 0.00 0.00 0.00 3.56
4711 5769 5.584649 TCCTCTACATTTTTAATGCTCCACG 59.415 40.000 0.00 0.00 0.00 4.94
4752 5810 4.006319 GGGTCCTTGAAGAGATGAAACTG 58.994 47.826 0.00 0.00 0.00 3.16
4781 5839 2.573915 TCAGTCTGTCCTCTGAGCTAGA 59.426 50.000 0.00 0.00 36.04 2.43
4809 5867 1.826385 AAATTCTGCTGAAGTCCCCG 58.174 50.000 11.86 0.00 35.44 5.73
4866 5924 4.375807 GCGATTTTCAGCTCACTATCATCG 60.376 45.833 0.00 0.00 35.28 3.84
4920 5978 5.105310 GGGCATAGAGTATGTACAGGTATGG 60.105 48.000 0.33 0.00 38.43 2.74
4928 5986 5.661312 AGTATGTACAGGTATGGTCATGTGT 59.339 40.000 0.33 0.00 34.27 3.72
4938 5999 1.271325 TGGTCATGTGTCATTCGCCTT 60.271 47.619 0.00 0.00 0.00 4.35
4968 6029 1.863454 CCCATCTCGCATTTCTTCTCG 59.137 52.381 0.00 0.00 0.00 4.04
4987 6048 5.403246 TCTCGCTTTTTACTTTTTGTTGCA 58.597 33.333 0.00 0.00 0.00 4.08
5040 6101 6.597562 TCTTCTTTAAAACTTCTGGCTACCA 58.402 36.000 0.00 0.00 0.00 3.25
5083 6144 4.253685 TCTGCAACTGAACACTTATAGCC 58.746 43.478 0.00 0.00 0.00 3.93
5084 6145 4.020218 TCTGCAACTGAACACTTATAGCCT 60.020 41.667 0.00 0.00 0.00 4.58
5145 6206 3.658757 AATCGTTGGGGTTTCAACATG 57.341 42.857 8.19 0.00 45.16 3.21
5160 6221 9.906660 GGTTTCAACATGTGAACTTAAATATCA 57.093 29.630 0.00 0.00 46.09 2.15
5193 6791 4.097892 ACATCGCAACTTCAAACTCCTTTT 59.902 37.500 0.00 0.00 0.00 2.27
5228 6826 9.047371 GTTATATTTTCTGCTCTTCTAGGAACC 57.953 37.037 0.00 0.00 0.00 3.62
5233 6831 1.749634 TGCTCTTCTAGGAACCGCTAC 59.250 52.381 0.00 0.00 0.00 3.58
5239 6838 2.811410 TCTAGGAACCGCTACCTTTCA 58.189 47.619 0.00 0.00 37.68 2.69
5261 6860 0.531200 GTCTGGAACCGGTACCTGAG 59.469 60.000 8.00 0.00 35.45 3.35
5298 6897 1.690893 GACAGATATGCAGCCTCTCCA 59.309 52.381 0.00 0.00 0.00 3.86
5300 6899 2.709934 ACAGATATGCAGCCTCTCCAAT 59.290 45.455 0.00 0.00 0.00 3.16
5315 6914 1.480954 TCCAATGAACTAGTCCTCGGC 59.519 52.381 0.00 0.00 0.00 5.54
5697 7417 3.058224 GCCAGCCACAACTAAGTACTTTG 60.058 47.826 14.49 14.45 0.00 2.77
5719 7439 1.757682 TTTGAAACGGAGGCACAAGT 58.242 45.000 0.00 0.00 0.00 3.16
5723 7443 3.280295 TGAAACGGAGGCACAAGTTTTA 58.720 40.909 8.52 3.51 37.00 1.52
5763 7487 6.234177 AGAAGAGAGTTGTCCTGTTAATTGG 58.766 40.000 0.00 0.00 0.00 3.16
5771 7495 5.452078 TGTCCTGTTAATTGGCAGAAAAG 57.548 39.130 11.22 0.00 34.87 2.27
5787 7511 1.778027 AAAGTGGGCGAAAACCGTCG 61.778 55.000 0.00 0.00 45.31 5.12
5808 7533 0.247185 AAATTTGCCCCACATGCGAG 59.753 50.000 0.00 0.00 0.00 5.03
5813 7538 2.203070 CCCCACATGCGAGCTACC 60.203 66.667 0.00 0.00 0.00 3.18
5815 7540 2.584064 CCACATGCGAGCTACCCA 59.416 61.111 0.00 0.00 0.00 4.51
5819 7544 3.480133 ATGCGAGCTACCCACCCC 61.480 66.667 0.00 0.00 0.00 4.95
5837 7562 4.694987 CCCCACCCCACCGCAAAT 62.695 66.667 0.00 0.00 0.00 2.32
5853 7613 1.137594 AAATCCCACGGGGGTTCTGA 61.138 55.000 25.56 2.00 43.90 3.27
5891 7659 2.048603 GGGTCATGGCTGGCTTCAC 61.049 63.158 0.00 0.00 0.00 3.18
5921 7735 2.457366 AGTTGAGTGGTAAGCCGAAG 57.543 50.000 0.00 0.00 37.67 3.79
5952 7766 0.251165 TTTTCCAGGAGAAAGGCCGG 60.251 55.000 0.00 0.00 45.11 6.13
5954 7768 0.545787 TTCCAGGAGAAAGGCCGGTA 60.546 55.000 1.90 0.00 0.00 4.02
5997 7811 1.625818 AGGAGCAAATCGAACACCTCT 59.374 47.619 0.00 0.00 0.00 3.69
5998 7812 2.003301 GGAGCAAATCGAACACCTCTC 58.997 52.381 0.00 0.00 0.00 3.20
5999 7813 2.354203 GGAGCAAATCGAACACCTCTCT 60.354 50.000 0.00 0.00 0.00 3.10
6000 7814 2.926838 GAGCAAATCGAACACCTCTCTC 59.073 50.000 0.00 0.00 0.00 3.20
6001 7815 2.564947 AGCAAATCGAACACCTCTCTCT 59.435 45.455 0.00 0.00 0.00 3.10
6006 7820 3.644884 TCGAACACCTCTCTCTTGTTC 57.355 47.619 4.02 4.02 43.75 3.18
6017 7831 4.887748 TCTCTCTTGTTCTCGAATTGCTT 58.112 39.130 0.00 0.00 0.00 3.91
6069 7945 4.588951 TGTTTGGCCATATTGTTTGGTACA 59.411 37.500 6.09 0.00 36.57 2.90
6101 7977 3.544698 TGACTGGAGTCTAGAAACCCT 57.455 47.619 10.93 0.00 44.99 4.34
6114 7990 7.288158 AGTCTAGAAACCCTGTCCAATATCTAC 59.712 40.741 0.00 0.00 0.00 2.59
6145 8021 9.947669 CATTCCATCTTTCTCAAAATGTAGATC 57.052 33.333 0.00 0.00 0.00 2.75
6237 8113 7.730364 AAACTTCAACCACTAATACTCACAG 57.270 36.000 0.00 0.00 0.00 3.66
6290 8169 6.158598 ACATCAATGTGTTTTCTTGCATACC 58.841 36.000 0.00 0.00 40.03 2.73
6291 8170 6.015180 ACATCAATGTGTTTTCTTGCATACCT 60.015 34.615 0.00 0.00 40.03 3.08
6292 8171 7.176515 ACATCAATGTGTTTTCTTGCATACCTA 59.823 33.333 0.00 0.00 40.03 3.08
6293 8172 6.908825 TCAATGTGTTTTCTTGCATACCTAC 58.091 36.000 0.00 0.00 0.00 3.18
6295 8174 6.892658 ATGTGTTTTCTTGCATACCTACAA 57.107 33.333 0.00 0.00 0.00 2.41
6319 8201 4.755123 CCTCTGTTTAATTCTTGTCGTGGT 59.245 41.667 0.00 0.00 0.00 4.16
6403 8285 9.817809 GTCATGTCTTTTTACTCTGGACATATA 57.182 33.333 6.57 0.00 43.09 0.86
6485 8367 9.645059 TCAAACACAACTTAAATTTTGACATGA 57.355 25.926 0.00 0.00 30.11 3.07
6498 8380 9.683069 AAATTTTGACATGAGAATACAAGTCAC 57.317 29.630 0.00 0.00 44.26 3.67
6516 8398 5.302357 GTCACATTTTGAGAAGATGGGAC 57.698 43.478 6.50 6.50 44.18 4.46
6576 8458 5.503662 TCGACCAATCATGATTTCCATTG 57.496 39.130 18.41 7.78 31.94 2.82
6661 8549 3.570975 TCAGCACAATTTGTCTGATTGCT 59.429 39.130 19.11 12.94 37.89 3.91
6674 8562 6.463360 TGTCTGATTGCTTCAACAGTACATA 58.537 36.000 0.00 0.00 32.78 2.29
6714 8602 5.581126 AAGAAAAACATCAGTCAGTTGCA 57.419 34.783 0.00 0.00 0.00 4.08
6715 8603 5.779529 AGAAAAACATCAGTCAGTTGCAT 57.220 34.783 0.00 0.00 0.00 3.96
6716 8604 6.152932 AGAAAAACATCAGTCAGTTGCATT 57.847 33.333 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 86 5.470098 TGGCTTGTAGAGATCTCACAAAAAC 59.530 40.000 26.45 21.58 33.59 2.43
196 199 2.028876 TGGCATGCATGGAAGATTCTG 58.971 47.619 27.34 0.13 0.00 3.02
198 201 2.029623 AGTGGCATGCATGGAAGATTC 58.970 47.619 27.34 9.09 0.00 2.52
212 215 0.486879 AGGAATTCCCCAAAGTGGCA 59.513 50.000 21.22 0.00 35.79 4.92
774 778 8.650490 GGGGATTTTCCAAATCATGTATACATT 58.350 33.333 15.85 0.00 38.64 2.71
775 779 8.012477 AGGGGATTTTCCAAATCATGTATACAT 58.988 33.333 12.75 12.75 38.64 2.29
776 780 7.361438 AGGGGATTTTCCAAATCATGTATACA 58.639 34.615 8.27 8.27 38.64 2.29
777 781 7.725844 AGAGGGGATTTTCCAAATCATGTATAC 59.274 37.037 10.58 0.00 38.64 1.47
778 782 7.825709 AGAGGGGATTTTCCAAATCATGTATA 58.174 34.615 10.58 0.00 38.64 1.47
779 783 6.686544 AGAGGGGATTTTCCAAATCATGTAT 58.313 36.000 10.58 0.00 38.64 2.29
780 784 6.091076 AGAGGGGATTTTCCAAATCATGTA 57.909 37.500 10.58 0.00 38.64 2.29
784 788 5.719563 GGTAAAGAGGGGATTTTCCAAATCA 59.280 40.000 10.58 0.00 38.64 2.57
818 844 8.180267 GCAATAATGTGAAGAGCATGGATATAC 58.820 37.037 0.00 0.00 0.00 1.47
828 854 7.585286 TCAAAAATGCAATAATGTGAAGAGC 57.415 32.000 0.00 0.00 0.00 4.09
859 885 8.297470 TCCCTCTAAAGAAAATGGAAATCATG 57.703 34.615 0.00 0.00 35.99 3.07
923 999 1.252904 GCTCCCAACATGCATGTGGT 61.253 55.000 31.98 15.62 41.61 4.16
970 1048 1.002011 GGAAGGTGGTTCTGGCTCC 60.002 63.158 0.00 0.00 35.25 4.70
994 1072 2.846754 GAGGCTGGCTAGGGGAGG 60.847 72.222 2.77 0.00 0.00 4.30
1217 1681 1.222387 CTCCTCCTCCTCGTCGTCT 59.778 63.158 0.00 0.00 0.00 4.18
1223 1687 1.064314 TCTTCTTCCTCCTCCTCCTCG 60.064 57.143 0.00 0.00 0.00 4.63
1224 1688 2.838637 TCTTCTTCCTCCTCCTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
1226 1690 3.108847 TCTTCTTCTTCCTCCTCCTCC 57.891 52.381 0.00 0.00 0.00 4.30
1227 1691 4.349365 TCTTCTTCTTCTTCCTCCTCCTC 58.651 47.826 0.00 0.00 0.00 3.71
1241 1705 1.639628 TCCCCGTACTCCTCTTCTTCT 59.360 52.381 0.00 0.00 0.00 2.85
1259 1723 0.103937 CCACGAGCTCCTCATCTTCC 59.896 60.000 8.47 0.00 0.00 3.46
1410 1891 0.530650 CGACCGCCAGTTAGCATCAT 60.531 55.000 0.00 0.00 0.00 2.45
1420 1901 2.811317 GCTCAGTTCGACCGCCAG 60.811 66.667 0.00 0.00 0.00 4.85
1432 1913 1.714794 AACGGACGAGAAATGCTCAG 58.285 50.000 0.00 0.00 44.15 3.35
1639 2121 7.918076 ACCCAAAGATTCAGAGATAACAAGTA 58.082 34.615 0.00 0.00 0.00 2.24
1659 2141 3.964688 TGTGACTAGTTCTTCAGACCCAA 59.035 43.478 0.00 0.00 0.00 4.12
1683 2165 4.213513 GCTACTAACTAGGGAGGCTAACA 58.786 47.826 0.00 0.00 0.00 2.41
1690 2172 9.668497 AATTAAACTTTGCTACTAACTAGGGAG 57.332 33.333 0.00 0.00 0.00 4.30
1691 2173 9.662947 GAATTAAACTTTGCTACTAACTAGGGA 57.337 33.333 0.00 0.00 0.00 4.20
1692 2174 9.444600 TGAATTAAACTTTGCTACTAACTAGGG 57.555 33.333 0.00 0.00 0.00 3.53
1702 2184 7.389330 TCTCGTTCCATGAATTAAACTTTGCTA 59.611 33.333 0.00 0.00 0.00 3.49
1717 2199 6.642950 GTCTACCTATGAATTCTCGTTCCATG 59.357 42.308 7.05 0.00 0.00 3.66
1728 2210 8.256356 ACAGCTAGATTGTCTACCTATGAATT 57.744 34.615 0.00 0.00 0.00 2.17
1733 2215 5.378332 ACGACAGCTAGATTGTCTACCTAT 58.622 41.667 19.38 2.97 42.11 2.57
1742 2224 3.735237 ACCCATACGACAGCTAGATTG 57.265 47.619 0.00 0.00 0.00 2.67
1749 2231 2.240493 ATAGCAACCCATACGACAGC 57.760 50.000 0.00 0.00 0.00 4.40
1750 2232 4.245660 CCATATAGCAACCCATACGACAG 58.754 47.826 0.00 0.00 0.00 3.51
1751 2233 3.644265 ACCATATAGCAACCCATACGACA 59.356 43.478 0.00 0.00 0.00 4.35
1752 2234 4.267349 ACCATATAGCAACCCATACGAC 57.733 45.455 0.00 0.00 0.00 4.34
1753 2235 4.967084 AACCATATAGCAACCCATACGA 57.033 40.909 0.00 0.00 0.00 3.43
1754 2236 4.630069 GCTAACCATATAGCAACCCATACG 59.370 45.833 1.64 0.00 46.06 3.06
1786 2268 5.841957 AAGAACAGTCACAAGCAAAATCT 57.158 34.783 0.00 0.00 0.00 2.40
1828 2310 0.039437 TCTTCACGAGAACAGCCGAC 60.039 55.000 0.00 0.00 0.00 4.79
1990 2472 5.630121 TGATGTGGTCTCATTTTGGTAACT 58.370 37.500 0.00 0.00 37.61 2.24
1991 2473 5.957842 TGATGTGGTCTCATTTTGGTAAC 57.042 39.130 0.00 0.00 0.00 2.50
1996 2478 5.892160 ACTCATGATGTGGTCTCATTTTG 57.108 39.130 0.00 0.00 31.00 2.44
2030 2512 5.824904 ATAACGACGTAGATACCACTGTT 57.175 39.130 0.00 0.00 0.00 3.16
2037 2519 8.423215 GGCATAAAAGAATAACGACGTAGATAC 58.577 37.037 0.00 0.00 0.00 2.24
2042 2524 7.257003 TGTAGGCATAAAAGAATAACGACGTA 58.743 34.615 0.00 0.00 0.00 3.57
2045 2527 8.193250 TCTTGTAGGCATAAAAGAATAACGAC 57.807 34.615 8.55 0.00 33.16 4.34
2523 3356 1.135199 GCTGGTGGCATCAACATTCTG 60.135 52.381 0.41 0.00 40.22 3.02
2525 3358 3.727419 GCTGGTGGCATCAACATTC 57.273 52.632 0.41 0.00 40.22 2.67
2711 3715 7.470192 TCTTCTTTTCCTTCCAATCCTGTAAT 58.530 34.615 0.00 0.00 0.00 1.89
2807 3811 1.065126 AGCTTGTCCCCTGATAGCAAC 60.065 52.381 0.00 0.00 34.97 4.17
2922 3926 3.377172 GGAATAACGGGAATCCACAGTTG 59.623 47.826 14.25 0.00 32.08 3.16
2945 3949 6.899393 TCAGAAAATACTTTGGCAAGACAT 57.101 33.333 0.00 0.00 33.72 3.06
2966 3970 2.738846 GACGAGCAAATCAGCTTCTTCA 59.261 45.455 0.00 0.00 46.75 3.02
2967 3971 2.222685 CGACGAGCAAATCAGCTTCTTC 60.223 50.000 0.00 0.00 46.75 2.87
2982 3986 0.242825 TTAGTGAACAGGGCGACGAG 59.757 55.000 0.00 0.00 0.00 4.18
2985 3989 3.521947 ATACTTAGTGAACAGGGCGAC 57.478 47.619 0.00 0.00 0.00 5.19
2988 3992 9.780186 ATATAGAAAATACTTAGTGAACAGGGC 57.220 33.333 0.00 0.00 0.00 5.19
3025 4029 1.066573 CGAGGAGCATTCTGGAACTGT 60.067 52.381 0.00 0.00 0.00 3.55
3080 4084 9.036671 GCTAGATTAAATACTCAGGACAGTTTC 57.963 37.037 0.00 0.00 0.00 2.78
3161 4182 3.795688 TTTCTTGATGAGGAGTTGGCT 57.204 42.857 0.00 0.00 0.00 4.75
3250 4274 5.356882 TTCACGACCTTTGCTAAATTCAG 57.643 39.130 0.00 0.00 0.00 3.02
3272 4296 4.022503 GCTGCTTTTGACTTCTGAAGGATT 60.023 41.667 20.61 0.53 0.00 3.01
3281 4305 3.273919 ACGATTGCTGCTTTTGACTTC 57.726 42.857 0.00 0.00 0.00 3.01
3320 4344 4.406649 TCAGCATCCACAATATCAGAGTCA 59.593 41.667 0.00 0.00 0.00 3.41
3377 4401 8.188799 CCATCATGAATAATGCATACCTTCATC 58.811 37.037 20.13 6.85 35.06 2.92
3404 4428 4.277174 TCCAATACGAAAACAATGCAGTGT 59.723 37.500 15.16 15.16 0.00 3.55
3508 4539 3.646162 ACTGTGTTGGTCTGTCCTTATGA 59.354 43.478 0.00 0.00 37.07 2.15
3523 4554 9.598517 ACATATGAAACAATCAAAAACTGTGTT 57.401 25.926 10.38 0.00 42.54 3.32
3527 4558 7.736880 CGCAACATATGAAACAATCAAAAACTG 59.263 33.333 10.38 0.00 42.54 3.16
3580 4621 1.940613 ACACAAGGAAGAGCGAACAAC 59.059 47.619 0.00 0.00 0.00 3.32
3597 4650 3.125316 GGACATTGATCGACCTTGAACAC 59.875 47.826 0.00 0.00 0.00 3.32
3608 4661 6.591834 ACTTCAGAAGTAAAGGACATTGATCG 59.408 38.462 14.58 0.00 40.69 3.69
3626 4679 6.942532 AGATTACAGCACAAAAACTTCAGA 57.057 33.333 0.00 0.00 0.00 3.27
3645 4698 9.512588 CCAAAGCATATTCCTGAATAGTAGATT 57.487 33.333 5.87 1.69 36.79 2.40
3646 4699 8.664079 ACCAAAGCATATTCCTGAATAGTAGAT 58.336 33.333 5.87 0.00 36.79 1.98
3676 4729 9.983024 CTCTTATATTATGGGAAGGAGAGAGTA 57.017 37.037 0.00 0.00 32.02 2.59
3677 4730 8.461033 ACTCTTATATTATGGGAAGGAGAGAGT 58.539 37.037 0.00 0.00 35.46 3.24
3678 4731 8.748412 CACTCTTATATTATGGGAAGGAGAGAG 58.252 40.741 0.00 0.00 33.96 3.20
3679 4732 8.235230 ACACTCTTATATTATGGGAAGGAGAGA 58.765 37.037 0.00 0.00 33.96 3.10
3680 4733 8.429237 ACACTCTTATATTATGGGAAGGAGAG 57.571 38.462 0.00 0.00 35.45 3.20
3681 4734 8.798975 AACACTCTTATATTATGGGAAGGAGA 57.201 34.615 0.00 0.00 0.00 3.71
3682 4735 9.853177 AAAACACTCTTATATTATGGGAAGGAG 57.147 33.333 0.00 0.00 0.00 3.69
3687 4740 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
3710 4763 6.364165 TGCGTTTTTGATACTACACTAGTGTC 59.636 38.462 31.11 17.07 44.30 3.67
3711 4764 6.145048 GTGCGTTTTTGATACTACACTAGTGT 59.855 38.462 30.13 30.13 46.87 3.55
3712 4765 6.365247 AGTGCGTTTTTGATACTACACTAGTG 59.635 38.462 21.44 21.44 39.81 2.74
3713 4766 6.453092 AGTGCGTTTTTGATACTACACTAGT 58.547 36.000 0.00 0.00 42.68 2.57
3714 4767 6.946229 AGTGCGTTTTTGATACTACACTAG 57.054 37.500 0.00 0.00 35.49 2.57
3715 4768 7.539710 CACTAGTGCGTTTTTGATACTACACTA 59.460 37.037 10.54 0.00 38.11 2.74
3716 4769 6.365247 CACTAGTGCGTTTTTGATACTACACT 59.635 38.462 10.54 0.00 40.10 3.55
3717 4770 6.145048 ACACTAGTGCGTTTTTGATACTACAC 59.855 38.462 22.90 0.00 0.00 2.90
3718 4771 6.218019 ACACTAGTGCGTTTTTGATACTACA 58.782 36.000 22.90 0.00 0.00 2.74
3719 4772 6.701432 ACACTAGTGCGTTTTTGATACTAC 57.299 37.500 22.90 0.00 0.00 2.73
3720 4773 7.596494 ACTACACTAGTGCGTTTTTGATACTA 58.404 34.615 22.90 2.14 37.69 1.82
3721 4774 6.453092 ACTACACTAGTGCGTTTTTGATACT 58.547 36.000 22.90 0.96 37.69 2.12
3722 4775 6.701432 ACTACACTAGTGCGTTTTTGATAC 57.299 37.500 22.90 0.00 37.69 2.24
3724 4777 8.991243 TTATACTACACTAGTGCGTTTTTGAT 57.009 30.769 22.90 11.66 39.81 2.57
3725 4778 8.815141 TTTATACTACACTAGTGCGTTTTTGA 57.185 30.769 22.90 5.44 39.81 2.69
3726 4779 9.866936 TTTTTATACTACACTAGTGCGTTTTTG 57.133 29.630 22.90 6.56 39.81 2.44
3750 4803 9.778741 TCCGTCTCATAATATAAGAGCATTTTT 57.221 29.630 0.00 0.00 0.00 1.94
3751 4804 9.429359 CTCCGTCTCATAATATAAGAGCATTTT 57.571 33.333 0.00 0.00 0.00 1.82
3752 4805 8.037758 CCTCCGTCTCATAATATAAGAGCATTT 58.962 37.037 0.00 0.00 0.00 2.32
3753 4806 7.364232 CCCTCCGTCTCATAATATAAGAGCATT 60.364 40.741 0.00 0.00 0.00 3.56
3754 4807 6.097554 CCCTCCGTCTCATAATATAAGAGCAT 59.902 42.308 0.00 0.00 0.00 3.79
3755 4808 5.419155 CCCTCCGTCTCATAATATAAGAGCA 59.581 44.000 0.00 0.00 0.00 4.26
3756 4809 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
3757 4810 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
3758 4811 6.791371 ACTCCCTCCGTCTCATAATATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
3759 4812 8.754991 ATACTCCCTCCGTCTCATAATATAAG 57.245 38.462 0.00 0.00 0.00 1.73
3762 4815 8.503573 TGATATACTCCCTCCGTCTCATAATAT 58.496 37.037 0.00 0.00 0.00 1.28
3763 4816 7.868974 TGATATACTCCCTCCGTCTCATAATA 58.131 38.462 0.00 0.00 0.00 0.98
3764 4817 6.732487 TGATATACTCCCTCCGTCTCATAAT 58.268 40.000 0.00 0.00 0.00 1.28
3765 4818 6.135819 TGATATACTCCCTCCGTCTCATAA 57.864 41.667 0.00 0.00 0.00 1.90
3766 4819 5.774102 TGATATACTCCCTCCGTCTCATA 57.226 43.478 0.00 0.00 0.00 2.15
3767 4820 4.659529 TGATATACTCCCTCCGTCTCAT 57.340 45.455 0.00 0.00 0.00 2.90
3768 4821 4.659529 ATGATATACTCCCTCCGTCTCA 57.340 45.455 0.00 0.00 0.00 3.27
3769 4822 5.477291 TCAAATGATATACTCCCTCCGTCTC 59.523 44.000 0.00 0.00 0.00 3.36
3770 4823 5.394738 TCAAATGATATACTCCCTCCGTCT 58.605 41.667 0.00 0.00 0.00 4.18
3771 4824 5.723672 TCAAATGATATACTCCCTCCGTC 57.276 43.478 0.00 0.00 0.00 4.79
3772 4825 6.688073 ATTCAAATGATATACTCCCTCCGT 57.312 37.500 0.00 0.00 0.00 4.69
3773 4826 7.390027 AGAATTCAAATGATATACTCCCTCCG 58.610 38.462 8.44 0.00 0.00 4.63
3808 4861 8.432805 ACATCTTATAACAGTTAATGGAGGGAG 58.567 37.037 0.00 0.00 0.00 4.30
3809 4862 8.331931 ACATCTTATAACAGTTAATGGAGGGA 57.668 34.615 0.00 0.00 0.00 4.20
3843 4896 9.424319 GCATCTATATACTTCCGAATCAGAAAA 57.576 33.333 0.00 0.00 0.00 2.29
3845 4898 8.122472 TGCATCTATATACTTCCGAATCAGAA 57.878 34.615 0.00 0.00 0.00 3.02
3847 4900 8.939201 AATGCATCTATATACTTCCGAATCAG 57.061 34.615 0.00 0.00 0.00 2.90
3852 4905 9.639601 CACTAAAATGCATCTATATACTTCCGA 57.360 33.333 0.00 0.00 0.00 4.55
3853 4906 9.424319 ACACTAAAATGCATCTATATACTTCCG 57.576 33.333 0.00 0.00 0.00 4.30
3862 4915 8.575589 TGAACAAACACACTAAAATGCATCTAT 58.424 29.630 0.00 0.00 0.00 1.98
3863 4916 7.860373 GTGAACAAACACACTAAAATGCATCTA 59.140 33.333 0.00 0.00 40.11 1.98
3864 4917 6.697019 GTGAACAAACACACTAAAATGCATCT 59.303 34.615 0.00 0.00 40.11 2.90
3866 4919 6.572519 AGTGAACAAACACACTAAAATGCAT 58.427 32.000 0.00 0.00 44.06 3.96
3867 4920 5.960113 AGTGAACAAACACACTAAAATGCA 58.040 33.333 0.00 0.00 44.06 3.96
3868 4921 6.033341 TGAGTGAACAAACACACTAAAATGC 58.967 36.000 0.00 0.00 45.54 3.56
3869 4922 8.633075 AATGAGTGAACAAACACACTAAAATG 57.367 30.769 0.00 0.00 45.54 2.32
3870 4923 9.301153 GAAATGAGTGAACAAACACACTAAAAT 57.699 29.630 0.00 0.00 45.54 1.82
3871 4924 8.300286 TGAAATGAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 45.54 1.52
3873 4926 7.384439 TGAAATGAGTGAACAAACACACTAA 57.616 32.000 0.00 0.00 45.54 2.24
3874 4927 6.993786 TGAAATGAGTGAACAAACACACTA 57.006 33.333 0.00 0.00 45.54 2.74
3876 4929 6.198966 GGAATGAAATGAGTGAACAAACACAC 59.801 38.462 0.00 0.00 42.45 3.82
3877 4930 6.272318 GGAATGAAATGAGTGAACAAACACA 58.728 36.000 0.00 0.00 42.45 3.72
3878 4931 5.399301 CGGAATGAAATGAGTGAACAAACAC 59.601 40.000 0.00 0.00 40.60 3.32
3879 4932 5.067153 ACGGAATGAAATGAGTGAACAAACA 59.933 36.000 0.00 0.00 0.00 2.83
3880 4933 5.519722 ACGGAATGAAATGAGTGAACAAAC 58.480 37.500 0.00 0.00 0.00 2.93
3881 4934 5.766150 ACGGAATGAAATGAGTGAACAAA 57.234 34.783 0.00 0.00 0.00 2.83
3882 4935 6.429692 ACATACGGAATGAAATGAGTGAACAA 59.570 34.615 6.98 0.00 39.07 2.83
3883 4936 5.937540 ACATACGGAATGAAATGAGTGAACA 59.062 36.000 6.98 0.00 39.07 3.18
3884 4937 6.422776 ACATACGGAATGAAATGAGTGAAC 57.577 37.500 6.98 0.00 39.07 3.18
3885 4938 7.327975 ACTACATACGGAATGAAATGAGTGAA 58.672 34.615 6.98 0.00 39.07 3.18
3886 4939 6.873997 ACTACATACGGAATGAAATGAGTGA 58.126 36.000 6.98 0.00 39.07 3.41
3900 4953 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
3901 4954 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
3925 4978 9.296400 CCCGTTTACAAATATAAGATGTTTTGG 57.704 33.333 0.00 0.00 34.23 3.28
3926 4979 9.296400 CCCCGTTTACAAATATAAGATGTTTTG 57.704 33.333 0.00 0.00 35.66 2.44
3927 4980 8.471609 CCCCCGTTTACAAATATAAGATGTTTT 58.528 33.333 0.00 0.00 0.00 2.43
3928 4981 8.002984 CCCCCGTTTACAAATATAAGATGTTT 57.997 34.615 0.00 0.00 0.00 2.83
3929 4982 7.576861 CCCCCGTTTACAAATATAAGATGTT 57.423 36.000 0.00 0.00 0.00 2.71
3951 5004 7.800300 ATTCTATCCTTAGTGAATACTCCCC 57.200 40.000 0.00 0.00 38.36 4.81
3961 5014 6.483640 GCCCACTGTAAATTCTATCCTTAGTG 59.516 42.308 0.00 0.00 34.40 2.74
3986 5039 4.494350 AACAAGCAGCAACTAACTGATG 57.506 40.909 0.00 0.00 37.32 3.07
4036 5089 0.328258 CAGGTGGAACTAACAGGGGG 59.672 60.000 0.00 0.00 36.74 5.40
4037 5090 0.322546 GCAGGTGGAACTAACAGGGG 60.323 60.000 0.00 0.00 36.74 4.79
4038 5091 0.400213 TGCAGGTGGAACTAACAGGG 59.600 55.000 0.00 0.00 36.74 4.45
4039 5092 2.270352 TTGCAGGTGGAACTAACAGG 57.730 50.000 0.00 0.00 36.74 4.00
4040 5093 4.359706 GTTTTTGCAGGTGGAACTAACAG 58.640 43.478 0.00 0.00 36.74 3.16
4041 5094 3.181495 CGTTTTTGCAGGTGGAACTAACA 60.181 43.478 8.27 0.00 36.74 2.41
4042 5095 3.065648 TCGTTTTTGCAGGTGGAACTAAC 59.934 43.478 0.00 0.00 36.74 2.34
4043 5096 3.065648 GTCGTTTTTGCAGGTGGAACTAA 59.934 43.478 0.00 0.00 36.74 2.24
4044 5097 2.614983 GTCGTTTTTGCAGGTGGAACTA 59.385 45.455 0.00 0.00 36.74 2.24
4045 5098 1.404035 GTCGTTTTTGCAGGTGGAACT 59.596 47.619 0.00 0.00 36.74 3.01
4056 5109 5.163302 TGACCACACATTAGTCGTTTTTG 57.837 39.130 0.00 0.00 33.09 2.44
4071 5124 9.829507 AACAAAAATGAATAAGATTTGACCACA 57.170 25.926 3.81 0.00 35.52 4.17
4108 5161 6.951971 AGGGGGAGATATATGATTTTCTTCG 58.048 40.000 0.00 0.00 0.00 3.79
4243 5296 5.483685 AACAGAGAGCACCTACATAAACA 57.516 39.130 0.00 0.00 0.00 2.83
4278 5331 3.299340 ACGTACAGTCACATTCAGACC 57.701 47.619 0.00 0.00 36.68 3.85
4279 5332 4.150098 GGAAACGTACAGTCACATTCAGAC 59.850 45.833 0.00 0.00 36.26 3.51
4280 5333 4.202172 TGGAAACGTACAGTCACATTCAGA 60.202 41.667 0.00 0.00 0.00 3.27
4281 5334 4.055360 TGGAAACGTACAGTCACATTCAG 58.945 43.478 0.00 0.00 0.00 3.02
4293 5350 5.740406 TCAAGTCGAAAAATGGAAACGTAC 58.260 37.500 0.00 0.00 0.00 3.67
4295 5352 4.886247 TCAAGTCGAAAAATGGAAACGT 57.114 36.364 0.00 0.00 0.00 3.99
4310 5367 5.689383 TGAAACTGCCAAAGTATCAAGTC 57.311 39.130 0.00 0.00 38.56 3.01
4315 5372 7.617041 ACTCTAATGAAACTGCCAAAGTATC 57.383 36.000 0.00 0.00 38.56 2.24
4319 5376 6.145535 GTGAACTCTAATGAAACTGCCAAAG 58.854 40.000 0.00 0.00 0.00 2.77
4352 5409 1.002366 GTGAGGTATGCGCAGTTCTG 58.998 55.000 18.32 0.00 0.00 3.02
4353 5410 0.608130 TGTGAGGTATGCGCAGTTCT 59.392 50.000 18.32 12.62 0.00 3.01
4408 5465 7.246171 TCTTAAAGTAACTGCTTCTCTGGAT 57.754 36.000 0.00 0.00 0.00 3.41
4437 5494 6.208599 TCCAGGTTCTCCATACATTTCAAAAC 59.791 38.462 0.00 0.00 35.89 2.43
4468 5525 6.543736 GCTGGTAAGCTTATAAACACAAGAC 58.456 40.000 9.88 0.00 46.60 3.01
4562 5619 2.791655 TGCCACTCGACTCTCTTAAGA 58.208 47.619 4.81 4.81 0.00 2.10
4563 5620 3.577649 TTGCCACTCGACTCTCTTAAG 57.422 47.619 0.00 0.00 0.00 1.85
4564 5621 4.307432 CTTTTGCCACTCGACTCTCTTAA 58.693 43.478 0.00 0.00 0.00 1.85
4565 5622 3.306088 CCTTTTGCCACTCGACTCTCTTA 60.306 47.826 0.00 0.00 0.00 2.10
4566 5623 2.548920 CCTTTTGCCACTCGACTCTCTT 60.549 50.000 0.00 0.00 0.00 2.85
4567 5624 1.001406 CCTTTTGCCACTCGACTCTCT 59.999 52.381 0.00 0.00 0.00 3.10
4596 5653 9.463443 CTATATTCATAACTGAACATGACGTGA 57.537 33.333 0.00 0.00 43.92 4.35
4635 5692 6.211184 ACAAACAAATTGGAGATAATGCTGGA 59.789 34.615 0.00 0.00 43.66 3.86
4649 5707 8.870160 TGAGATCCAAAGTTACAAACAAATTG 57.130 30.769 0.00 0.00 44.95 2.32
4676 5734 2.174685 TGTAGAGGAGCTTGGCCATA 57.825 50.000 6.09 0.00 0.00 2.74
4678 5736 1.289160 AATGTAGAGGAGCTTGGCCA 58.711 50.000 0.00 0.00 0.00 5.36
4679 5737 2.426842 AAATGTAGAGGAGCTTGGCC 57.573 50.000 0.00 0.00 0.00 5.36
4695 5753 4.709397 TGGATTCCGTGGAGCATTAAAAAT 59.291 37.500 0.00 0.00 0.00 1.82
4705 5763 1.402968 CTGCAAATGGATTCCGTGGAG 59.597 52.381 0.00 3.35 0.00 3.86
4711 5769 2.629617 CCCATACCTGCAAATGGATTCC 59.370 50.000 19.19 0.00 44.62 3.01
4752 5810 0.394565 AGGACAGACTGACAACTGGC 59.605 55.000 10.08 9.49 40.98 4.85
4809 5867 2.026262 TGGCCTTTGAAGTATCTCCCAC 60.026 50.000 3.32 0.00 0.00 4.61
4866 5924 9.476761 GCATTGAACGATTCCAAAATTTTATTC 57.523 29.630 2.44 0.00 0.00 1.75
4920 5978 1.806542 ACAAGGCGAATGACACATGAC 59.193 47.619 0.00 0.00 0.00 3.06
4928 5986 1.243902 GGGAAACACAAGGCGAATGA 58.756 50.000 0.00 0.00 0.00 2.57
4968 6029 7.463544 AGTCAATGCAACAAAAAGTAAAAAGC 58.536 30.769 0.00 0.00 0.00 3.51
5040 6101 1.683943 TGCAGAGCAAGACAAGCTTT 58.316 45.000 0.00 0.00 43.58 3.51
5083 6144 3.433274 TCGCTGATGTTGTTTTAGCAGAG 59.567 43.478 0.00 0.00 34.16 3.35
5084 6145 3.398406 TCGCTGATGTTGTTTTAGCAGA 58.602 40.909 0.00 0.00 34.16 4.26
5160 6221 3.914426 AGTTGCGATGTTTAGATCCCT 57.086 42.857 0.00 0.00 0.00 4.20
5220 6818 3.821421 ATGAAAGGTAGCGGTTCCTAG 57.179 47.619 13.51 0.00 33.27 3.02
5223 6821 2.418976 GACAATGAAAGGTAGCGGTTCC 59.581 50.000 1.47 1.47 0.00 3.62
5228 6826 2.972625 TCCAGACAATGAAAGGTAGCG 58.027 47.619 0.00 0.00 0.00 4.26
5233 6831 1.812571 CCGGTTCCAGACAATGAAAGG 59.187 52.381 0.00 0.00 0.00 3.11
5239 6838 1.278127 CAGGTACCGGTTCCAGACAAT 59.722 52.381 29.51 7.29 0.00 2.71
5261 6860 4.293415 TCTGTCGGAAAGTAAAGTTCGTC 58.707 43.478 0.00 0.00 0.00 4.20
5298 6897 1.568504 TGGCCGAGGACTAGTTCATT 58.431 50.000 3.42 0.00 0.00 2.57
5300 6899 1.112113 GATGGCCGAGGACTAGTTCA 58.888 55.000 3.42 0.00 0.00 3.18
5315 6914 0.179089 CACCGAAGAGCAGAGGATGG 60.179 60.000 0.00 0.00 0.00 3.51
5386 6985 1.128692 CGAAACCATCTTCCGTCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
5541 7140 1.006571 TCAACCGGTGAGAGTTCGC 60.007 57.895 8.52 0.00 0.00 4.70
5697 7417 2.570442 TGTGCCTCCGTTTCAAAAAC 57.430 45.000 0.00 0.00 0.00 2.43
5754 7478 3.244044 GCCCACTTTTCTGCCAATTAACA 60.244 43.478 0.00 0.00 0.00 2.41
5763 7487 1.487482 GTTTTCGCCCACTTTTCTGC 58.513 50.000 0.00 0.00 0.00 4.26
5821 7546 3.068064 GATTTGCGGTGGGGTGGG 61.068 66.667 0.00 0.00 0.00 4.61
5822 7547 3.068064 GGATTTGCGGTGGGGTGG 61.068 66.667 0.00 0.00 0.00 4.61
5823 7548 3.068064 GGGATTTGCGGTGGGGTG 61.068 66.667 0.00 0.00 0.00 4.61
5824 7549 3.585428 TGGGATTTGCGGTGGGGT 61.585 61.111 0.00 0.00 0.00 4.95
5825 7550 3.068064 GTGGGATTTGCGGTGGGG 61.068 66.667 0.00 0.00 0.00 4.96
5826 7551 3.439540 CGTGGGATTTGCGGTGGG 61.440 66.667 0.00 0.00 0.00 4.61
5827 7552 3.439540 CCGTGGGATTTGCGGTGG 61.440 66.667 0.00 0.00 40.53 4.61
5853 7613 4.416848 ACCCCAATTGCTACCTATGATCTT 59.583 41.667 0.00 0.00 0.00 2.40
5904 7672 1.968493 AGTCTTCGGCTTACCACTCAA 59.032 47.619 0.00 0.00 34.57 3.02
5907 7675 2.550208 CCAAAGTCTTCGGCTTACCACT 60.550 50.000 0.00 0.00 34.57 4.00
5909 7677 1.695242 TCCAAAGTCTTCGGCTTACCA 59.305 47.619 0.00 0.00 34.57 3.25
5997 7811 3.675225 CGAAGCAATTCGAGAACAAGAGA 59.325 43.478 4.44 0.00 46.52 3.10
5998 7812 3.675225 TCGAAGCAATTCGAGAACAAGAG 59.325 43.478 8.86 0.00 46.98 2.85
5999 7813 3.649073 TCGAAGCAATTCGAGAACAAGA 58.351 40.909 8.86 0.00 46.98 3.02
6045 7859 4.696479 ACCAAACAATATGGCCAAACAA 57.304 36.364 10.96 0.00 41.89 2.83
6046 7860 4.588951 TGTACCAAACAATATGGCCAAACA 59.411 37.500 10.96 0.00 41.89 2.83
6047 7861 5.140747 TGTACCAAACAATATGGCCAAAC 57.859 39.130 10.96 0.00 41.89 2.93
6048 7862 5.808366 TTGTACCAAACAATATGGCCAAA 57.192 34.783 10.96 0.00 43.22 3.28
6069 7945 5.153950 GACTCCAGTCAAATCCAGTAGTT 57.846 43.478 1.61 0.00 44.18 2.24
6101 7977 7.373617 TGGAATGCTTAGTAGATATTGGACA 57.626 36.000 0.00 0.00 0.00 4.02
6114 7990 8.248945 ACATTTTGAGAAAGATGGAATGCTTAG 58.751 33.333 0.00 0.00 0.00 2.18
6145 8021 8.623310 TGACCGCATGTATGTATAATAATACG 57.377 34.615 0.00 0.00 40.84 3.06
6199 8075 8.340443 GTGGTTGAAGTTTTAAGACGTTATTCT 58.660 33.333 0.00 0.00 0.00 2.40
6265 8141 6.646240 GGTATGCAAGAAAACACATTGATGTT 59.354 34.615 0.00 0.00 44.76 2.71
6267 8143 6.392354 AGGTATGCAAGAAAACACATTGATG 58.608 36.000 0.00 0.00 0.00 3.07
6290 8169 7.170998 ACGACAAGAATTAAACAGAGGTTGTAG 59.829 37.037 0.00 0.00 39.73 2.74
6291 8170 6.987992 ACGACAAGAATTAAACAGAGGTTGTA 59.012 34.615 0.00 0.00 39.73 2.41
6292 8171 5.820947 ACGACAAGAATTAAACAGAGGTTGT 59.179 36.000 0.00 0.00 43.45 3.32
6293 8172 6.136071 CACGACAAGAATTAAACAGAGGTTG 58.864 40.000 0.00 0.00 37.30 3.77
6295 8174 4.755123 CCACGACAAGAATTAAACAGAGGT 59.245 41.667 0.00 0.00 0.00 3.85
6343 8225 4.164221 TCCCTCCATTCCATACTTCTTGTC 59.836 45.833 0.00 0.00 0.00 3.18
6351 8233 5.632034 AAAGTACTCCCTCCATTCCATAC 57.368 43.478 0.00 0.00 0.00 2.39
6481 8363 8.724229 TCTCAAAATGTGACTTGTATTCTCATG 58.276 33.333 0.00 0.00 29.76 3.07
6485 8367 8.908786 TCTTCTCAAAATGTGACTTGTATTCT 57.091 30.769 0.00 0.00 31.13 2.40
6498 8380 7.560368 ACTAGTAGTCCCATCTTCTCAAAATG 58.440 38.462 0.00 0.00 0.00 2.32
6516 8398 5.934402 TTCTTAAAGGGCTGGACTAGTAG 57.066 43.478 0.00 0.00 0.00 2.57
6641 8529 4.038282 TGAAGCAATCAGACAAATTGTGCT 59.962 37.500 2.20 1.72 42.39 4.40
6644 8532 5.904941 TGTTGAAGCAATCAGACAAATTGT 58.095 33.333 0.00 0.00 39.77 2.71
6661 8549 9.930693 TGTAACATGTGTATATGTACTGTTGAA 57.069 29.630 0.00 2.78 40.24 2.69
6674 8562 8.512138 GTTTTTCTTAGGCTGTAACATGTGTAT 58.488 33.333 0.00 0.00 0.00 2.29
6714 8602 4.081254 TGAGAAGTATCAGCTCAGCACAAT 60.081 41.667 0.00 0.00 34.02 2.71
6715 8603 3.259123 TGAGAAGTATCAGCTCAGCACAA 59.741 43.478 0.00 0.00 34.02 3.33
6716 8604 2.827921 TGAGAAGTATCAGCTCAGCACA 59.172 45.455 0.00 0.00 34.02 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.