Multiple sequence alignment - TraesCS1D01G409300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G409300 chr1D 100.000 2666 0 0 1428 4093 471134954 471132289 0.000000e+00 4924.0
1 TraesCS1D01G409300 chr1D 100.000 709 0 0 397 1105 471135985 471135277 0.000000e+00 1310.0
2 TraesCS1D01G409300 chr1D 100.000 193 0 0 1 193 471136381 471136189 1.400000e-94 357.0
3 TraesCS1D01G409300 chr1D 88.947 190 11 7 3551 3738 191375257 191375438 4.120000e-55 226.0
4 TraesCS1D01G409300 chr1D 84.884 86 12 1 41 126 109811029 109810945 7.290000e-13 86.1
5 TraesCS1D01G409300 chr1B 95.570 1896 55 4 1428 3314 654861569 654859694 0.000000e+00 3009.0
6 TraesCS1D01G409300 chr1B 93.215 339 21 2 2977 3314 654836046 654835709 7.900000e-137 497.0
7 TraesCS1D01G409300 chr1B 84.352 409 18 10 657 1056 654862273 654861902 3.890000e-95 359.0
8 TraesCS1D01G409300 chr1B 90.598 234 22 0 3317 3550 654859651 654859418 1.100000e-80 311.0
9 TraesCS1D01G409300 chr1B 92.453 212 15 1 2954 3165 654855132 654854922 6.650000e-78 302.0
10 TraesCS1D01G409300 chr1B 88.298 188 19 3 3551 3738 595024688 595024504 5.330000e-54 222.0
11 TraesCS1D01G409300 chr1B 90.683 161 13 1 3827 3985 654859411 654859251 3.200000e-51 213.0
12 TraesCS1D01G409300 chr1B 84.862 218 23 6 3326 3543 654854694 654854487 1.150000e-50 211.0
13 TraesCS1D01G409300 chr1B 92.308 130 9 1 3737 3866 654854481 654854353 2.510000e-42 183.0
14 TraesCS1D01G409300 chr1B 95.050 101 4 1 3214 3314 654854929 654854830 1.520000e-34 158.0
15 TraesCS1D01G409300 chr1B 88.710 62 7 0 65 126 165804996 165804935 4.390000e-10 76.8
16 TraesCS1D01G409300 chr1B 100.000 38 0 0 3317 3354 654835667 654835630 2.040000e-08 71.3
17 TraesCS1D01G409300 chr1A 96.753 1694 52 1 1429 3122 565422608 565420918 0.000000e+00 2820.0
18 TraesCS1D01G409300 chr1A 88.976 508 26 7 607 1105 565423131 565422645 5.850000e-168 601.0
19 TraesCS1D01G409300 chr1A 93.143 175 12 0 3140 3314 565420870 565420696 1.460000e-64 257.0
20 TraesCS1D01G409300 chr1A 85.022 227 25 4 3317 3543 565420653 565420436 5.330000e-54 222.0
21 TraesCS1D01G409300 chr1A 86.458 192 13 10 3551 3738 516740632 516740814 8.970000e-47 198.0
22 TraesCS1D01G409300 chr1A 90.580 138 10 3 3737 3872 565420430 565420294 3.250000e-41 180.0
23 TraesCS1D01G409300 chr1A 83.163 196 26 4 3885 4075 565420186 565419993 5.440000e-39 172.0
24 TraesCS1D01G409300 chr1A 83.942 137 14 4 14 145 8207494 8207627 1.540000e-24 124.0
25 TraesCS1D01G409300 chr1A 94.643 56 1 2 89 143 8176823 8176877 7.290000e-13 86.1
26 TraesCS1D01G409300 chr4A 88.298 188 11 6 3551 3738 104614263 104614439 8.910000e-52 215.0
27 TraesCS1D01G409300 chr4A 80.672 119 18 3 22 139 470131463 470131577 2.030000e-13 87.9
28 TraesCS1D01G409300 chr2A 87.831 189 15 6 3551 3737 514229522 514229340 8.910000e-52 215.0
29 TraesCS1D01G409300 chr5A 87.701 187 18 2 3552 3736 561124808 561124991 3.200000e-51 213.0
30 TraesCS1D01G409300 chr3D 87.701 187 15 4 3553 3738 610880489 610880668 1.150000e-50 211.0
31 TraesCS1D01G409300 chr3D 100.000 31 0 0 2710 2740 516385271 516385241 1.590000e-04 58.4
32 TraesCS1D01G409300 chr7A 87.166 187 20 4 3551 3737 448265217 448265035 4.150000e-50 209.0
33 TraesCS1D01G409300 chr7A 90.909 55 4 1 66 120 625375159 625375212 5.680000e-09 73.1
34 TraesCS1D01G409300 chr6A 87.234 188 14 8 3551 3738 563165838 563166015 5.360000e-49 206.0
35 TraesCS1D01G409300 chr6A 82.877 146 21 4 1 143 377482807 377482951 1.190000e-25 128.0
36 TraesCS1D01G409300 chr7B 82.500 120 15 4 18 136 641547284 641547170 2.600000e-17 100.0
37 TraesCS1D01G409300 chr2B 82.000 100 16 2 41 139 666475445 666475347 2.620000e-12 84.2
38 TraesCS1D01G409300 chr3A 92.857 42 1 2 2700 2740 651588238 651588198 4.420000e-05 60.2
39 TraesCS1D01G409300 chr3B 100.000 31 0 0 2710 2740 679646137 679646107 1.590000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G409300 chr1D 471132289 471136381 4092 True 2197.000000 4924 100.000000 1 4093 3 chr1D.!!$R2 4092
1 TraesCS1D01G409300 chr1B 654859251 654862273 3022 True 973.000000 3009 90.300750 657 3985 4 chr1B.!!$R5 3328
2 TraesCS1D01G409300 chr1B 654854353 654855132 779 True 213.500000 302 91.168250 2954 3866 4 chr1B.!!$R4 912
3 TraesCS1D01G409300 chr1A 565419993 565423131 3138 True 708.666667 2820 89.606167 607 4075 6 chr1A.!!$R1 3468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 505 0.108329 ATGGGGTTGACGCGTTAGAG 60.108 55.0 15.53 0.00 34.15 2.43 F
693 694 0.466739 AAACTGGGGTTGACCGGAAC 60.467 55.0 9.46 2.13 41.60 3.62 F
2312 2601 0.611714 AGGACAATAAGAACGCGGGT 59.388 50.0 12.47 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1890 1.139095 GAAGGTGGCGAGGTAGACG 59.861 63.158 0.0 0.0 0.0 4.18 R
2531 2820 0.179936 GGAAGCTCATGTCCTCCAGG 59.820 60.000 0.0 0.0 0.0 4.45 R
3608 4051 0.108019 CGCCTCCCCACCTATTAACC 59.892 60.000 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.667420 GGCTTCGTCGTCAAAGGA 57.333 55.556 0.00 0.00 0.00 3.36
18 19 2.446341 GGCTTCGTCGTCAAAGGAG 58.554 57.895 0.00 0.00 0.00 3.69
19 20 1.627550 GGCTTCGTCGTCAAAGGAGC 61.628 60.000 0.00 0.00 0.00 4.70
20 21 0.667792 GCTTCGTCGTCAAAGGAGCT 60.668 55.000 0.00 0.00 0.00 4.09
21 22 1.063806 CTTCGTCGTCAAAGGAGCTG 58.936 55.000 0.00 0.00 0.00 4.24
22 23 0.319555 TTCGTCGTCAAAGGAGCTGG 60.320 55.000 0.00 0.00 0.00 4.85
23 24 2.383527 CGTCGTCAAAGGAGCTGGC 61.384 63.158 0.00 0.00 0.00 4.85
24 25 2.035442 GTCGTCAAAGGAGCTGGCC 61.035 63.158 0.00 0.00 0.00 5.36
25 26 3.121030 CGTCAAAGGAGCTGGCCG 61.121 66.667 0.00 0.00 0.00 6.13
26 27 2.747855 GTCAAAGGAGCTGGCCGG 60.748 66.667 7.41 7.41 0.00 6.13
27 28 4.033776 TCAAAGGAGCTGGCCGGG 62.034 66.667 15.02 1.86 0.00 5.73
50 51 4.704833 CGGGGTGAGGTGGTGCTG 62.705 72.222 0.00 0.00 0.00 4.41
51 52 3.249189 GGGGTGAGGTGGTGCTGA 61.249 66.667 0.00 0.00 0.00 4.26
52 53 2.032681 GGGTGAGGTGGTGCTGAC 59.967 66.667 0.00 0.00 0.00 3.51
53 54 2.357517 GGTGAGGTGGTGCTGACG 60.358 66.667 0.00 0.00 0.00 4.35
54 55 2.357517 GTGAGGTGGTGCTGACGG 60.358 66.667 0.00 0.00 0.00 4.79
55 56 4.314440 TGAGGTGGTGCTGACGGC 62.314 66.667 0.00 0.00 42.22 5.68
70 71 4.324991 GGCGACGTTGGGGGAAGT 62.325 66.667 4.64 0.00 0.00 3.01
71 72 2.281276 GCGACGTTGGGGGAAGTT 60.281 61.111 4.64 0.00 0.00 2.66
72 73 2.613506 GCGACGTTGGGGGAAGTTG 61.614 63.158 4.64 0.00 0.00 3.16
73 74 2.613506 CGACGTTGGGGGAAGTTGC 61.614 63.158 0.00 0.00 0.00 4.17
74 75 2.593436 ACGTTGGGGGAAGTTGCG 60.593 61.111 0.00 0.00 0.00 4.85
75 76 3.361977 CGTTGGGGGAAGTTGCGG 61.362 66.667 0.00 0.00 0.00 5.69
76 77 2.203437 GTTGGGGGAAGTTGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
77 78 2.203422 TTGGGGGAAGTTGCGGTG 60.203 61.111 0.00 0.00 0.00 4.94
78 79 3.801068 TTGGGGGAAGTTGCGGTGG 62.801 63.158 0.00 0.00 0.00 4.61
119 120 3.047877 GGCGACGTTGGAAGGTGG 61.048 66.667 4.64 0.00 0.00 4.61
120 121 3.723348 GCGACGTTGGAAGGTGGC 61.723 66.667 4.64 3.92 40.27 5.01
121 122 3.411351 CGACGTTGGAAGGTGGCG 61.411 66.667 0.00 0.00 0.00 5.69
122 123 2.280592 GACGTTGGAAGGTGGCGT 60.281 61.111 0.00 0.00 38.55 5.68
123 124 2.590575 ACGTTGGAAGGTGGCGTG 60.591 61.111 0.00 0.00 34.36 5.34
124 125 4.025401 CGTTGGAAGGTGGCGTGC 62.025 66.667 0.00 0.00 0.00 5.34
125 126 2.594592 GTTGGAAGGTGGCGTGCT 60.595 61.111 0.00 0.00 0.00 4.40
126 127 2.594303 TTGGAAGGTGGCGTGCTG 60.594 61.111 0.00 0.00 0.00 4.41
136 137 4.697756 GCGTGCTGCAGGGTGGTA 62.698 66.667 22.09 0.00 45.45 3.25
137 138 2.268920 CGTGCTGCAGGGTGGTAT 59.731 61.111 17.12 0.00 0.00 2.73
138 139 2.108514 CGTGCTGCAGGGTGGTATG 61.109 63.158 17.12 0.00 0.00 2.39
139 140 2.045045 TGCTGCAGGGTGGTATGC 60.045 61.111 17.12 0.00 42.86 3.14
140 141 2.273449 GCTGCAGGGTGGTATGCT 59.727 61.111 17.12 0.00 42.98 3.79
141 142 2.117156 GCTGCAGGGTGGTATGCTG 61.117 63.158 17.12 0.00 42.98 4.41
142 143 1.452651 CTGCAGGGTGGTATGCTGG 60.453 63.158 5.57 0.00 42.98 4.85
143 144 2.830370 GCAGGGTGGTATGCTGGC 60.830 66.667 0.00 0.00 39.38 4.85
144 145 2.514592 CAGGGTGGTATGCTGGCG 60.515 66.667 0.00 0.00 0.00 5.69
145 146 2.687200 AGGGTGGTATGCTGGCGA 60.687 61.111 0.00 0.00 0.00 5.54
146 147 2.072487 AGGGTGGTATGCTGGCGAT 61.072 57.895 0.00 0.00 0.00 4.58
147 148 1.152963 GGGTGGTATGCTGGCGATT 60.153 57.895 0.00 0.00 0.00 3.34
148 149 1.447317 GGGTGGTATGCTGGCGATTG 61.447 60.000 0.00 0.00 0.00 2.67
149 150 1.447317 GGTGGTATGCTGGCGATTGG 61.447 60.000 0.00 0.00 0.00 3.16
150 151 1.152984 TGGTATGCTGGCGATTGGG 60.153 57.895 0.00 0.00 0.00 4.12
151 152 1.152963 GGTATGCTGGCGATTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
152 153 1.447317 GGTATGCTGGCGATTGGGTG 61.447 60.000 0.00 0.00 0.00 4.61
153 154 1.152984 TATGCTGGCGATTGGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
154 155 2.623094 TATGCTGGCGATTGGGTGGG 62.623 60.000 0.00 0.00 0.00 4.61
176 177 4.347453 GCCGGGTGCTTGCTGTTG 62.347 66.667 2.18 0.00 36.87 3.33
177 178 2.594303 CCGGGTGCTTGCTGTTGA 60.594 61.111 0.00 0.00 0.00 3.18
178 179 1.973281 CCGGGTGCTTGCTGTTGAT 60.973 57.895 0.00 0.00 0.00 2.57
179 180 1.210931 CGGGTGCTTGCTGTTGATG 59.789 57.895 0.00 0.00 0.00 3.07
180 181 1.588082 GGGTGCTTGCTGTTGATGG 59.412 57.895 0.00 0.00 0.00 3.51
181 182 1.588082 GGTGCTTGCTGTTGATGGG 59.412 57.895 0.00 0.00 0.00 4.00
182 183 0.895100 GGTGCTTGCTGTTGATGGGA 60.895 55.000 0.00 0.00 0.00 4.37
183 184 0.524862 GTGCTTGCTGTTGATGGGAG 59.475 55.000 0.00 0.00 0.00 4.30
184 185 0.609957 TGCTTGCTGTTGATGGGAGG 60.610 55.000 0.00 0.00 0.00 4.30
185 186 0.322816 GCTTGCTGTTGATGGGAGGA 60.323 55.000 0.00 0.00 0.00 3.71
186 187 1.887956 GCTTGCTGTTGATGGGAGGAA 60.888 52.381 0.00 0.00 0.00 3.36
187 188 2.089980 CTTGCTGTTGATGGGAGGAAG 58.910 52.381 0.00 0.00 0.00 3.46
188 189 1.361204 TGCTGTTGATGGGAGGAAGA 58.639 50.000 0.00 0.00 0.00 2.87
189 190 1.280133 TGCTGTTGATGGGAGGAAGAG 59.720 52.381 0.00 0.00 0.00 2.85
190 191 1.556911 GCTGTTGATGGGAGGAAGAGA 59.443 52.381 0.00 0.00 0.00 3.10
191 192 2.026822 GCTGTTGATGGGAGGAAGAGAA 60.027 50.000 0.00 0.00 0.00 2.87
192 193 3.371380 GCTGTTGATGGGAGGAAGAGAAT 60.371 47.826 0.00 0.00 0.00 2.40
418 419 3.907894 GTGAAGGCACGTTTATTTGGA 57.092 42.857 0.00 0.00 34.94 3.53
419 420 4.434713 GTGAAGGCACGTTTATTTGGAT 57.565 40.909 0.00 0.00 34.94 3.41
420 421 4.412207 GTGAAGGCACGTTTATTTGGATC 58.588 43.478 0.00 0.00 34.94 3.36
421 422 4.156008 GTGAAGGCACGTTTATTTGGATCT 59.844 41.667 0.00 0.00 34.94 2.75
422 423 4.764823 TGAAGGCACGTTTATTTGGATCTT 59.235 37.500 0.00 0.00 0.00 2.40
423 424 5.941058 TGAAGGCACGTTTATTTGGATCTTA 59.059 36.000 0.00 0.00 0.00 2.10
424 425 6.601613 TGAAGGCACGTTTATTTGGATCTTAT 59.398 34.615 0.00 0.00 0.00 1.73
425 426 7.122055 TGAAGGCACGTTTATTTGGATCTTATT 59.878 33.333 0.00 0.00 0.00 1.40
426 427 7.404671 AGGCACGTTTATTTGGATCTTATTT 57.595 32.000 0.00 0.00 0.00 1.40
427 428 7.257722 AGGCACGTTTATTTGGATCTTATTTG 58.742 34.615 0.00 0.00 0.00 2.32
428 429 6.475402 GGCACGTTTATTTGGATCTTATTTGG 59.525 38.462 0.00 0.00 0.00 3.28
429 430 7.254852 GCACGTTTATTTGGATCTTATTTGGA 58.745 34.615 0.00 0.00 0.00 3.53
430 431 7.920682 GCACGTTTATTTGGATCTTATTTGGAT 59.079 33.333 0.00 0.00 0.00 3.41
431 432 9.450807 CACGTTTATTTGGATCTTATTTGGATC 57.549 33.333 0.00 0.00 38.92 3.36
432 433 8.342634 ACGTTTATTTGGATCTTATTTGGATCG 58.657 33.333 0.00 0.00 40.11 3.69
433 434 7.803189 CGTTTATTTGGATCTTATTTGGATCGG 59.197 37.037 0.00 0.00 40.11 4.18
434 435 8.846211 GTTTATTTGGATCTTATTTGGATCGGA 58.154 33.333 0.00 0.00 40.11 4.55
435 436 8.621532 TTATTTGGATCTTATTTGGATCGGAG 57.378 34.615 0.00 0.00 40.11 4.63
436 437 4.623932 TGGATCTTATTTGGATCGGAGG 57.376 45.455 0.00 0.00 40.11 4.30
437 438 3.244561 TGGATCTTATTTGGATCGGAGGC 60.245 47.826 0.00 0.00 40.11 4.70
438 439 2.526304 TCTTATTTGGATCGGAGGCG 57.474 50.000 0.00 0.00 0.00 5.52
439 440 1.760613 TCTTATTTGGATCGGAGGCGT 59.239 47.619 0.00 0.00 0.00 5.68
440 441 2.169769 TCTTATTTGGATCGGAGGCGTT 59.830 45.455 0.00 0.00 0.00 4.84
441 442 1.948104 TATTTGGATCGGAGGCGTTG 58.052 50.000 0.00 0.00 0.00 4.10
442 443 0.748005 ATTTGGATCGGAGGCGTTGG 60.748 55.000 0.00 0.00 0.00 3.77
443 444 2.813226 TTTGGATCGGAGGCGTTGGG 62.813 60.000 0.00 0.00 0.00 4.12
452 453 3.443588 GGCGTTGGGCTGACTTTT 58.556 55.556 0.00 0.00 42.94 2.27
453 454 1.007387 GGCGTTGGGCTGACTTTTG 60.007 57.895 0.00 0.00 42.94 2.44
454 455 1.733526 GCGTTGGGCTGACTTTTGT 59.266 52.632 0.00 0.00 39.11 2.83
455 456 0.594796 GCGTTGGGCTGACTTTTGTG 60.595 55.000 0.00 0.00 39.11 3.33
456 457 0.738389 CGTTGGGCTGACTTTTGTGT 59.262 50.000 0.00 0.00 0.00 3.72
457 458 1.268539 CGTTGGGCTGACTTTTGTGTC 60.269 52.381 0.00 0.00 37.47 3.67
458 459 1.067060 GTTGGGCTGACTTTTGTGTCC 59.933 52.381 0.00 0.00 36.21 4.02
459 460 0.817634 TGGGCTGACTTTTGTGTCCG 60.818 55.000 0.00 0.00 36.21 4.79
460 461 0.818040 GGGCTGACTTTTGTGTCCGT 60.818 55.000 0.00 0.00 36.21 4.69
461 462 0.586802 GGCTGACTTTTGTGTCCGTC 59.413 55.000 0.00 0.00 36.21 4.79
462 463 1.583054 GCTGACTTTTGTGTCCGTCT 58.417 50.000 0.00 0.00 36.21 4.18
463 464 1.940613 GCTGACTTTTGTGTCCGTCTT 59.059 47.619 0.00 0.00 36.21 3.01
464 465 2.286418 GCTGACTTTTGTGTCCGTCTTG 60.286 50.000 0.00 0.00 36.21 3.02
465 466 3.194861 CTGACTTTTGTGTCCGTCTTGA 58.805 45.455 0.00 0.00 36.21 3.02
466 467 2.933906 TGACTTTTGTGTCCGTCTTGAC 59.066 45.455 0.00 0.00 36.21 3.18
467 468 2.285977 ACTTTTGTGTCCGTCTTGACC 58.714 47.619 0.00 0.00 34.25 4.02
468 469 1.602377 CTTTTGTGTCCGTCTTGACCC 59.398 52.381 0.00 0.00 34.25 4.46
469 470 0.542333 TTTGTGTCCGTCTTGACCCA 59.458 50.000 0.00 0.00 34.25 4.51
470 471 0.542333 TTGTGTCCGTCTTGACCCAA 59.458 50.000 0.00 0.00 31.53 4.12
471 472 0.542333 TGTGTCCGTCTTGACCCAAA 59.458 50.000 0.00 0.00 34.25 3.28
472 473 1.065345 TGTGTCCGTCTTGACCCAAAA 60.065 47.619 0.00 0.00 34.25 2.44
473 474 2.227194 GTGTCCGTCTTGACCCAAAAT 58.773 47.619 0.00 0.00 34.25 1.82
474 475 2.031157 GTGTCCGTCTTGACCCAAAATG 60.031 50.000 0.00 0.00 34.25 2.32
475 476 2.158740 TGTCCGTCTTGACCCAAAATGA 60.159 45.455 0.00 0.00 34.25 2.57
476 477 2.882137 GTCCGTCTTGACCCAAAATGAA 59.118 45.455 0.00 0.00 0.00 2.57
477 478 2.882137 TCCGTCTTGACCCAAAATGAAC 59.118 45.455 0.00 0.00 0.00 3.18
478 479 2.030274 CCGTCTTGACCCAAAATGAACC 60.030 50.000 0.00 0.00 0.00 3.62
479 480 2.350388 CGTCTTGACCCAAAATGAACCG 60.350 50.000 0.00 0.00 0.00 4.44
480 481 2.030274 GTCTTGACCCAAAATGAACCGG 60.030 50.000 0.00 0.00 0.00 5.28
481 482 1.960689 CTTGACCCAAAATGAACCGGT 59.039 47.619 0.00 0.00 0.00 5.28
482 483 1.323412 TGACCCAAAATGAACCGGTG 58.677 50.000 8.52 0.00 0.00 4.94
483 484 1.133761 TGACCCAAAATGAACCGGTGA 60.134 47.619 8.52 0.00 0.00 4.02
484 485 1.957877 GACCCAAAATGAACCGGTGAA 59.042 47.619 8.52 0.00 0.00 3.18
485 486 2.362717 GACCCAAAATGAACCGGTGAAA 59.637 45.455 8.52 0.00 0.00 2.69
486 487 2.969262 ACCCAAAATGAACCGGTGAAAT 59.031 40.909 8.52 0.00 0.00 2.17
487 488 3.244044 ACCCAAAATGAACCGGTGAAATG 60.244 43.478 8.52 2.93 0.00 2.32
488 489 3.324993 CCAAAATGAACCGGTGAAATGG 58.675 45.455 8.52 8.98 0.00 3.16
489 490 3.324993 CAAAATGAACCGGTGAAATGGG 58.675 45.455 8.52 0.00 0.00 4.00
490 491 1.555967 AATGAACCGGTGAAATGGGG 58.444 50.000 8.52 0.00 0.00 4.96
491 492 0.407918 ATGAACCGGTGAAATGGGGT 59.592 50.000 8.52 0.00 0.00 4.95
492 493 0.186386 TGAACCGGTGAAATGGGGTT 59.814 50.000 8.52 0.00 45.02 4.11
493 494 0.601057 GAACCGGTGAAATGGGGTTG 59.399 55.000 8.52 0.00 42.54 3.77
494 495 0.186386 AACCGGTGAAATGGGGTTGA 59.814 50.000 8.52 0.00 41.04 3.18
495 496 0.538746 ACCGGTGAAATGGGGTTGAC 60.539 55.000 6.12 0.00 0.00 3.18
496 497 1.582610 CCGGTGAAATGGGGTTGACG 61.583 60.000 0.00 0.00 0.00 4.35
497 498 1.584495 GGTGAAATGGGGTTGACGC 59.416 57.895 0.00 0.00 0.00 5.19
498 499 1.209127 GTGAAATGGGGTTGACGCG 59.791 57.895 3.53 3.53 34.15 6.01
499 500 1.228003 TGAAATGGGGTTGACGCGT 60.228 52.632 13.85 13.85 34.15 6.01
500 501 0.820074 TGAAATGGGGTTGACGCGTT 60.820 50.000 15.53 0.00 42.38 4.84
501 502 1.158434 GAAATGGGGTTGACGCGTTA 58.842 50.000 15.53 6.34 40.00 3.18
502 503 1.129811 GAAATGGGGTTGACGCGTTAG 59.870 52.381 15.53 0.00 40.00 2.34
503 504 0.322322 AATGGGGTTGACGCGTTAGA 59.678 50.000 15.53 0.00 39.22 2.10
504 505 0.108329 ATGGGGTTGACGCGTTAGAG 60.108 55.000 15.53 0.00 34.15 2.43
505 506 1.291272 GGGGTTGACGCGTTAGAGT 59.709 57.895 15.53 0.00 0.00 3.24
506 507 0.735287 GGGGTTGACGCGTTAGAGTC 60.735 60.000 15.53 0.00 45.58 3.36
516 517 1.892468 CGTTAGAGTCGCTACCACAC 58.108 55.000 0.00 0.00 0.00 3.82
517 518 1.467734 CGTTAGAGTCGCTACCACACT 59.532 52.381 0.00 0.00 0.00 3.55
518 519 2.728225 CGTTAGAGTCGCTACCACACTG 60.728 54.545 0.00 0.00 0.00 3.66
519 520 2.484742 TAGAGTCGCTACCACACTGA 57.515 50.000 0.00 0.00 0.00 3.41
520 521 1.840737 AGAGTCGCTACCACACTGAT 58.159 50.000 0.00 0.00 0.00 2.90
521 522 1.474478 AGAGTCGCTACCACACTGATG 59.526 52.381 0.00 0.00 0.00 3.07
522 523 1.472878 GAGTCGCTACCACACTGATGA 59.527 52.381 0.00 0.00 0.00 2.92
523 524 2.099921 GAGTCGCTACCACACTGATGAT 59.900 50.000 0.00 0.00 0.00 2.45
524 525 2.159184 AGTCGCTACCACACTGATGATG 60.159 50.000 0.00 0.00 0.00 3.07
525 526 2.099405 TCGCTACCACACTGATGATGA 58.901 47.619 0.00 0.00 0.00 2.92
526 527 2.495669 TCGCTACCACACTGATGATGAA 59.504 45.455 0.00 0.00 0.00 2.57
527 528 3.132824 TCGCTACCACACTGATGATGAAT 59.867 43.478 0.00 0.00 0.00 2.57
528 529 3.873361 CGCTACCACACTGATGATGAATT 59.127 43.478 0.00 0.00 0.00 2.17
529 530 5.049828 CGCTACCACACTGATGATGAATTA 58.950 41.667 0.00 0.00 0.00 1.40
530 531 5.050769 CGCTACCACACTGATGATGAATTAC 60.051 44.000 0.00 0.00 0.00 1.89
531 532 5.050769 GCTACCACACTGATGATGAATTACG 60.051 44.000 0.00 0.00 0.00 3.18
532 533 4.191544 ACCACACTGATGATGAATTACGG 58.808 43.478 0.00 0.00 0.00 4.02
533 534 4.081142 ACCACACTGATGATGAATTACGGA 60.081 41.667 0.00 0.00 0.00 4.69
534 535 4.271049 CCACACTGATGATGAATTACGGAC 59.729 45.833 0.00 0.00 0.00 4.79
535 536 4.271049 CACACTGATGATGAATTACGGACC 59.729 45.833 0.00 0.00 0.00 4.46
536 537 4.162320 ACACTGATGATGAATTACGGACCT 59.838 41.667 0.00 0.00 0.00 3.85
537 538 5.118990 CACTGATGATGAATTACGGACCTT 58.881 41.667 0.00 0.00 0.00 3.50
538 539 5.235186 CACTGATGATGAATTACGGACCTTC 59.765 44.000 0.00 0.00 0.00 3.46
539 540 4.703897 TGATGATGAATTACGGACCTTCC 58.296 43.478 0.00 0.00 0.00 3.46
571 572 2.288186 CAGAGTGTGCATCATCATCTGC 59.712 50.000 0.00 0.00 38.87 4.26
572 573 2.093128 AGAGTGTGCATCATCATCTGCA 60.093 45.455 0.00 0.00 45.60 4.41
580 581 6.459670 TGCATCATCATCTGCAAAATACTT 57.540 33.333 0.00 0.00 44.87 2.24
581 582 6.270064 TGCATCATCATCTGCAAAATACTTG 58.730 36.000 0.00 0.00 44.87 3.16
582 583 5.175126 GCATCATCATCTGCAAAATACTTGC 59.825 40.000 2.52 2.52 45.11 4.01
583 584 6.504398 CATCATCATCTGCAAAATACTTGCT 58.496 36.000 10.51 0.00 45.13 3.91
584 585 6.127810 TCATCATCTGCAAAATACTTGCTC 57.872 37.500 10.51 0.00 45.13 4.26
585 586 5.884232 TCATCATCTGCAAAATACTTGCTCT 59.116 36.000 10.51 0.00 45.13 4.09
586 587 6.376299 TCATCATCTGCAAAATACTTGCTCTT 59.624 34.615 10.51 0.00 45.13 2.85
587 588 6.579666 TCATCTGCAAAATACTTGCTCTTT 57.420 33.333 10.51 0.00 45.13 2.52
588 589 7.686438 TCATCTGCAAAATACTTGCTCTTTA 57.314 32.000 10.51 0.00 45.13 1.85
589 590 8.284945 TCATCTGCAAAATACTTGCTCTTTAT 57.715 30.769 10.51 0.00 45.13 1.40
590 591 8.186163 TCATCTGCAAAATACTTGCTCTTTATG 58.814 33.333 10.51 7.15 45.13 1.90
591 592 7.686438 TCTGCAAAATACTTGCTCTTTATGA 57.314 32.000 10.51 0.00 45.13 2.15
592 593 7.530010 TCTGCAAAATACTTGCTCTTTATGAC 58.470 34.615 10.51 0.00 45.13 3.06
593 594 7.391554 TCTGCAAAATACTTGCTCTTTATGACT 59.608 33.333 10.51 0.00 45.13 3.41
594 595 7.307694 TGCAAAATACTTGCTCTTTATGACTG 58.692 34.615 10.51 0.00 45.13 3.51
595 596 7.040478 TGCAAAATACTTGCTCTTTATGACTGT 60.040 33.333 10.51 0.00 45.13 3.55
596 597 8.450964 GCAAAATACTTGCTCTTTATGACTGTA 58.549 33.333 2.27 0.00 41.87 2.74
599 600 9.890629 AAATACTTGCTCTTTATGACTGTATCA 57.109 29.630 0.00 0.00 43.13 2.15
600 601 9.890629 AATACTTGCTCTTTATGACTGTATCAA 57.109 29.630 0.00 0.00 41.93 2.57
601 602 9.890629 ATACTTGCTCTTTATGACTGTATCAAA 57.109 29.630 0.00 0.00 41.93 2.69
602 603 8.621532 ACTTGCTCTTTATGACTGTATCAAAA 57.378 30.769 0.00 0.00 41.93 2.44
603 604 9.236006 ACTTGCTCTTTATGACTGTATCAAAAT 57.764 29.630 0.00 0.00 41.93 1.82
688 689 3.756963 GAGTATCAAAACTGGGGTTGACC 59.243 47.826 0.00 0.00 36.62 4.02
693 694 0.466739 AAACTGGGGTTGACCGGAAC 60.467 55.000 9.46 2.13 41.60 3.62
741 742 3.132925 GAGCAAAAGCAAAAGCAATGGA 58.867 40.909 0.00 0.00 0.00 3.41
760 761 2.821969 GGAGAATGTTGGATTGTGTGCT 59.178 45.455 0.00 0.00 0.00 4.40
769 770 2.518836 GATTGTGTGCTGCCTCGTGC 62.519 60.000 0.00 0.00 41.77 5.34
805 806 1.004277 TGGTGGAAAATTCTCCCTCCG 59.996 52.381 0.00 0.00 34.22 4.63
810 811 2.357075 GAAAATTCTCCCTCCGTCCAC 58.643 52.381 0.00 0.00 0.00 4.02
1451 1728 2.422231 CCTCCTCACGCTCCTCCTG 61.422 68.421 0.00 0.00 0.00 3.86
2003 2292 2.095252 GCGCTTCAAGACTCCCGAC 61.095 63.158 0.00 0.00 0.00 4.79
2087 2376 2.418910 ATGCGACCTGGACCTCTCG 61.419 63.158 0.00 0.00 0.00 4.04
2312 2601 0.611714 AGGACAATAAGAACGCGGGT 59.388 50.000 12.47 0.00 0.00 5.28
2446 2735 3.701530 CGTCGTCAAGCAGCGCAA 61.702 61.111 11.47 0.00 0.00 4.85
2708 2997 2.943978 CGACCCGTTGGAGAAGGCT 61.944 63.158 0.00 0.00 34.81 4.58
3118 3407 4.019174 TGGTAACTTTACTCCCTACGAGG 58.981 47.826 0.00 0.00 39.58 4.63
3148 3467 0.776810 TGCAAGGAGATTTGGGGTGA 59.223 50.000 0.00 0.00 0.00 4.02
3199 3518 5.052481 GGCAATTCATTCCTGGCTTAATTC 58.948 41.667 0.00 0.00 33.14 2.17
3200 3519 5.052481 GCAATTCATTCCTGGCTTAATTCC 58.948 41.667 0.00 0.00 0.00 3.01
3210 3529 3.349022 TGGCTTAATTCCGTAACAAGGG 58.651 45.455 0.00 0.00 0.00 3.95
3314 3633 5.297776 GGAGTACATTGGATTGGATGTCTTG 59.702 44.000 0.00 0.00 37.62 3.02
3315 3634 6.065976 AGTACATTGGATTGGATGTCTTGA 57.934 37.500 0.00 0.00 37.62 3.02
3384 3827 7.496529 TCAAAGAGGAGTTGTTTTATGTCAG 57.503 36.000 0.00 0.00 0.00 3.51
3385 3828 6.486657 TCAAAGAGGAGTTGTTTTATGTCAGG 59.513 38.462 0.00 0.00 0.00 3.86
3390 3833 7.229506 AGAGGAGTTGTTTTATGTCAGGAAAAG 59.770 37.037 0.00 0.00 0.00 2.27
3403 3846 8.641498 ATGTCAGGAAAAGAATCAATAACAGT 57.359 30.769 0.00 0.00 0.00 3.55
3405 3848 9.219603 TGTCAGGAAAAGAATCAATAACAGTAG 57.780 33.333 0.00 0.00 0.00 2.57
3454 3897 8.981659 TCTGGTCTCTATCAATCAATCACTTAA 58.018 33.333 0.00 0.00 0.00 1.85
3465 3908 5.312120 TCAATCACTTAAGAGACGGAGAC 57.688 43.478 10.09 0.00 0.00 3.36
3510 3953 6.476378 AGTGGATTGGATATTTTATCGAGGG 58.524 40.000 0.00 0.00 0.00 4.30
3520 3963 3.553828 TTTATCGAGGGGTTTAGCCAG 57.446 47.619 0.00 0.00 39.65 4.85
3550 3993 0.165295 GCATCATCATCATCGGTGCG 59.835 55.000 0.00 0.00 0.00 5.34
3551 3994 1.787012 CATCATCATCATCGGTGCGA 58.213 50.000 0.00 0.00 41.13 5.10
3552 3995 1.725164 CATCATCATCATCGGTGCGAG 59.275 52.381 0.00 0.00 39.91 5.03
3553 3996 0.746659 TCATCATCATCGGTGCGAGT 59.253 50.000 0.00 0.00 39.91 4.18
3554 3997 1.953686 TCATCATCATCGGTGCGAGTA 59.046 47.619 0.00 0.00 39.91 2.59
3555 3998 2.360801 TCATCATCATCGGTGCGAGTAA 59.639 45.455 0.00 0.00 39.91 2.24
3556 3999 3.005791 TCATCATCATCGGTGCGAGTAAT 59.994 43.478 0.00 0.00 39.91 1.89
3557 4000 2.742774 TCATCATCGGTGCGAGTAATG 58.257 47.619 0.00 0.00 39.91 1.90
3558 4001 1.193203 CATCATCGGTGCGAGTAATGC 59.807 52.381 0.00 0.00 39.91 3.56
3559 4002 0.459899 TCATCGGTGCGAGTAATGCT 59.540 50.000 0.00 0.00 39.91 3.79
3560 4003 1.679153 TCATCGGTGCGAGTAATGCTA 59.321 47.619 0.00 0.00 39.91 3.49
3561 4004 1.787155 CATCGGTGCGAGTAATGCTAC 59.213 52.381 0.00 0.00 39.91 3.58
3562 4005 0.812549 TCGGTGCGAGTAATGCTACA 59.187 50.000 0.00 0.00 0.00 2.74
3563 4006 0.921347 CGGTGCGAGTAATGCTACAC 59.079 55.000 0.00 0.00 35.05 2.90
3564 4007 1.469251 CGGTGCGAGTAATGCTACACT 60.469 52.381 4.54 0.00 35.71 3.55
3565 4008 2.618053 GGTGCGAGTAATGCTACACTT 58.382 47.619 4.54 0.00 35.71 3.16
3566 4009 3.732774 CGGTGCGAGTAATGCTACACTTA 60.733 47.826 4.54 0.00 35.71 2.24
3567 4010 3.550678 GGTGCGAGTAATGCTACACTTAC 59.449 47.826 4.54 0.00 35.71 2.34
3568 4011 4.171005 GTGCGAGTAATGCTACACTTACA 58.829 43.478 0.00 0.00 33.78 2.41
3569 4012 4.624024 GTGCGAGTAATGCTACACTTACAA 59.376 41.667 0.00 0.00 33.78 2.41
3570 4013 5.119588 GTGCGAGTAATGCTACACTTACAAA 59.880 40.000 0.00 0.00 33.78 2.83
3571 4014 5.119588 TGCGAGTAATGCTACACTTACAAAC 59.880 40.000 0.00 0.00 31.64 2.93
3572 4015 5.720433 GCGAGTAATGCTACACTTACAAACG 60.720 44.000 0.00 0.00 31.64 3.60
3573 4016 5.570206 CGAGTAATGCTACACTTACAAACGA 59.430 40.000 0.00 0.00 31.64 3.85
3574 4017 6.252869 CGAGTAATGCTACACTTACAAACGAT 59.747 38.462 0.00 0.00 31.64 3.73
3575 4018 7.201410 CGAGTAATGCTACACTTACAAACGATT 60.201 37.037 0.00 0.00 31.64 3.34
3576 4019 8.319143 AGTAATGCTACACTTACAAACGATTT 57.681 30.769 0.00 0.00 31.64 2.17
3577 4020 9.426837 AGTAATGCTACACTTACAAACGATTTA 57.573 29.630 0.00 0.00 31.64 1.40
3578 4021 9.469239 GTAATGCTACACTTACAAACGATTTAC 57.531 33.333 0.00 0.00 0.00 2.01
3579 4022 7.661127 ATGCTACACTTACAAACGATTTACA 57.339 32.000 0.00 0.00 0.00 2.41
3580 4023 7.479897 TGCTACACTTACAAACGATTTACAA 57.520 32.000 0.00 0.00 0.00 2.41
3581 4024 7.569297 TGCTACACTTACAAACGATTTACAAG 58.431 34.615 0.00 0.00 0.00 3.16
3582 4025 7.013529 GCTACACTTACAAACGATTTACAAGG 58.986 38.462 0.00 0.00 0.00 3.61
3583 4026 6.930667 ACACTTACAAACGATTTACAAGGT 57.069 33.333 0.00 0.00 0.00 3.50
3584 4027 7.324354 ACACTTACAAACGATTTACAAGGTT 57.676 32.000 0.00 0.00 0.00 3.50
3585 4028 7.764331 ACACTTACAAACGATTTACAAGGTTT 58.236 30.769 0.00 0.00 33.19 3.27
3586 4029 8.245491 ACACTTACAAACGATTTACAAGGTTTT 58.755 29.630 0.00 0.00 30.73 2.43
3587 4030 9.719279 CACTTACAAACGATTTACAAGGTTTTA 57.281 29.630 0.00 0.00 30.73 1.52
3588 4031 9.720667 ACTTACAAACGATTTACAAGGTTTTAC 57.279 29.630 0.00 0.00 30.73 2.01
3589 4032 9.719279 CTTACAAACGATTTACAAGGTTTTACA 57.281 29.630 0.00 0.00 30.73 2.41
3591 4034 8.983307 ACAAACGATTTACAAGGTTTTACAAA 57.017 26.923 0.00 0.00 30.73 2.83
3592 4035 9.420551 ACAAACGATTTACAAGGTTTTACAAAA 57.579 25.926 0.00 0.00 30.73 2.44
3595 4038 8.637281 ACGATTTACAAGGTTTTACAAAAAGG 57.363 30.769 0.00 0.00 0.00 3.11
3596 4039 8.468399 ACGATTTACAAGGTTTTACAAAAAGGA 58.532 29.630 0.00 0.00 0.00 3.36
3597 4040 9.471084 CGATTTACAAGGTTTTACAAAAAGGAT 57.529 29.630 0.00 0.00 0.00 3.24
3624 4067 8.547481 AATTTAATTGGTTAATAGGTGGGGAG 57.453 34.615 0.00 0.00 30.34 4.30
3625 4068 4.536295 AATTGGTTAATAGGTGGGGAGG 57.464 45.455 0.00 0.00 0.00 4.30
3626 4069 1.218844 TGGTTAATAGGTGGGGAGGC 58.781 55.000 0.00 0.00 0.00 4.70
3627 4070 0.108019 GGTTAATAGGTGGGGAGGCG 59.892 60.000 0.00 0.00 0.00 5.52
3628 4071 0.108019 GTTAATAGGTGGGGAGGCGG 59.892 60.000 0.00 0.00 0.00 6.13
3629 4072 1.702022 TTAATAGGTGGGGAGGCGGC 61.702 60.000 0.00 0.00 0.00 6.53
3643 4086 4.293671 CGGCCCACCCCCTGAAAA 62.294 66.667 0.00 0.00 0.00 2.29
3644 4087 2.449777 GGCCCACCCCCTGAAAAT 59.550 61.111 0.00 0.00 0.00 1.82
3645 4088 1.685765 GGCCCACCCCCTGAAAATC 60.686 63.158 0.00 0.00 0.00 2.17
3646 4089 1.078347 GCCCACCCCCTGAAAATCA 59.922 57.895 0.00 0.00 0.00 2.57
3647 4090 0.972471 GCCCACCCCCTGAAAATCAG 60.972 60.000 0.32 0.32 43.91 2.90
3657 4100 1.298953 TGAAAATCAGAGGGGAGGGG 58.701 55.000 0.00 0.00 0.00 4.79
3658 4101 0.553333 GAAAATCAGAGGGGAGGGGG 59.447 60.000 0.00 0.00 0.00 5.40
3659 4102 1.584717 AAAATCAGAGGGGAGGGGGC 61.585 60.000 0.00 0.00 0.00 5.80
3660 4103 2.805827 AAATCAGAGGGGAGGGGGCA 62.806 60.000 0.00 0.00 0.00 5.36
3661 4104 2.805827 AATCAGAGGGGAGGGGGCAA 62.806 60.000 0.00 0.00 0.00 4.52
3662 4105 3.415087 CAGAGGGGAGGGGGCAAG 61.415 72.222 0.00 0.00 0.00 4.01
3663 4106 3.960313 AGAGGGGAGGGGGCAAGT 61.960 66.667 0.00 0.00 0.00 3.16
3664 4107 2.941583 GAGGGGAGGGGGCAAGTT 60.942 66.667 0.00 0.00 0.00 2.66
3665 4108 2.454511 AGGGGAGGGGGCAAGTTT 60.455 61.111 0.00 0.00 0.00 2.66
3666 4109 1.151452 AGGGGAGGGGGCAAGTTTA 60.151 57.895 0.00 0.00 0.00 2.01
3667 4110 0.555117 AGGGGAGGGGGCAAGTTTAT 60.555 55.000 0.00 0.00 0.00 1.40
3668 4111 0.397114 GGGGAGGGGGCAAGTTTATG 60.397 60.000 0.00 0.00 0.00 1.90
3669 4112 0.629058 GGGAGGGGGCAAGTTTATGA 59.371 55.000 0.00 0.00 0.00 2.15
3670 4113 1.217942 GGGAGGGGGCAAGTTTATGAT 59.782 52.381 0.00 0.00 0.00 2.45
3671 4114 2.359249 GGGAGGGGGCAAGTTTATGATT 60.359 50.000 0.00 0.00 0.00 2.57
3672 4115 2.695147 GGAGGGGGCAAGTTTATGATTG 59.305 50.000 0.00 0.00 0.00 2.67
3673 4116 2.695147 GAGGGGGCAAGTTTATGATTGG 59.305 50.000 0.00 0.00 0.00 3.16
3674 4117 2.044353 AGGGGGCAAGTTTATGATTGGT 59.956 45.455 0.00 0.00 0.00 3.67
3675 4118 2.837591 GGGGGCAAGTTTATGATTGGTT 59.162 45.455 0.00 0.00 0.00 3.67
3676 4119 4.027437 GGGGGCAAGTTTATGATTGGTTA 58.973 43.478 0.00 0.00 0.00 2.85
3677 4120 4.099419 GGGGGCAAGTTTATGATTGGTTAG 59.901 45.833 0.00 0.00 0.00 2.34
3678 4121 4.709886 GGGGCAAGTTTATGATTGGTTAGT 59.290 41.667 0.00 0.00 0.00 2.24
3679 4122 5.889289 GGGGCAAGTTTATGATTGGTTAGTA 59.111 40.000 0.00 0.00 0.00 1.82
3680 4123 6.039382 GGGGCAAGTTTATGATTGGTTAGTAG 59.961 42.308 0.00 0.00 0.00 2.57
3681 4124 6.602009 GGGCAAGTTTATGATTGGTTAGTAGT 59.398 38.462 0.00 0.00 0.00 2.73
3682 4125 7.771826 GGGCAAGTTTATGATTGGTTAGTAGTA 59.228 37.037 0.00 0.00 0.00 1.82
3683 4126 8.827677 GGCAAGTTTATGATTGGTTAGTAGTAG 58.172 37.037 0.00 0.00 0.00 2.57
3684 4127 9.595823 GCAAGTTTATGATTGGTTAGTAGTAGA 57.404 33.333 0.00 0.00 0.00 2.59
3705 4148 9.349713 AGTAGATAGAAAGAATCCTAGTCAGTG 57.650 37.037 0.00 0.00 0.00 3.66
3706 4149 9.127277 GTAGATAGAAAGAATCCTAGTCAGTGT 57.873 37.037 0.00 0.00 0.00 3.55
3707 4150 8.006298 AGATAGAAAGAATCCTAGTCAGTGTG 57.994 38.462 0.00 0.00 0.00 3.82
3708 4151 7.617723 AGATAGAAAGAATCCTAGTCAGTGTGT 59.382 37.037 0.00 0.00 0.00 3.72
3709 4152 8.824756 ATAGAAAGAATCCTAGTCAGTGTGTA 57.175 34.615 0.00 0.00 0.00 2.90
3710 4153 7.540474 AGAAAGAATCCTAGTCAGTGTGTAA 57.460 36.000 0.00 0.00 0.00 2.41
3711 4154 8.140112 AGAAAGAATCCTAGTCAGTGTGTAAT 57.860 34.615 0.00 0.00 0.00 1.89
3712 4155 8.598041 AGAAAGAATCCTAGTCAGTGTGTAATT 58.402 33.333 0.00 0.00 0.00 1.40
3713 4156 8.553459 AAAGAATCCTAGTCAGTGTGTAATTG 57.447 34.615 0.00 0.00 0.00 2.32
3714 4157 6.109359 AGAATCCTAGTCAGTGTGTAATTGC 58.891 40.000 0.00 0.00 0.00 3.56
3715 4158 3.845178 TCCTAGTCAGTGTGTAATTGCG 58.155 45.455 0.00 0.00 0.00 4.85
3716 4159 3.257375 TCCTAGTCAGTGTGTAATTGCGT 59.743 43.478 0.00 0.00 0.00 5.24
3717 4160 3.367932 CCTAGTCAGTGTGTAATTGCGTG 59.632 47.826 0.00 0.00 0.00 5.34
3718 4161 2.833794 AGTCAGTGTGTAATTGCGTGT 58.166 42.857 0.00 0.00 0.00 4.49
3719 4162 3.985008 AGTCAGTGTGTAATTGCGTGTA 58.015 40.909 0.00 0.00 0.00 2.90
3720 4163 4.373527 AGTCAGTGTGTAATTGCGTGTAA 58.626 39.130 0.00 0.00 0.00 2.41
3721 4164 4.210537 AGTCAGTGTGTAATTGCGTGTAAC 59.789 41.667 0.00 0.00 0.00 2.50
3722 4165 4.210537 GTCAGTGTGTAATTGCGTGTAACT 59.789 41.667 0.00 0.00 31.75 2.24
3723 4166 4.446385 TCAGTGTGTAATTGCGTGTAACTC 59.554 41.667 0.00 0.00 31.75 3.01
3724 4167 4.447724 CAGTGTGTAATTGCGTGTAACTCT 59.552 41.667 0.00 0.00 31.75 3.24
3725 4168 5.050363 CAGTGTGTAATTGCGTGTAACTCTT 60.050 40.000 0.00 0.00 31.75 2.85
3726 4169 5.526111 AGTGTGTAATTGCGTGTAACTCTTT 59.474 36.000 0.00 0.00 31.75 2.52
3727 4170 5.619607 GTGTGTAATTGCGTGTAACTCTTTG 59.380 40.000 0.00 0.00 31.75 2.77
3728 4171 5.294799 TGTGTAATTGCGTGTAACTCTTTGT 59.705 36.000 0.00 0.00 31.75 2.83
3729 4172 6.479331 TGTGTAATTGCGTGTAACTCTTTGTA 59.521 34.615 0.00 0.00 31.75 2.41
3730 4173 7.171848 TGTGTAATTGCGTGTAACTCTTTGTAT 59.828 33.333 0.00 0.00 31.75 2.29
3731 4174 8.649841 GTGTAATTGCGTGTAACTCTTTGTATA 58.350 33.333 0.00 0.00 31.75 1.47
3732 4175 9.373603 TGTAATTGCGTGTAACTCTTTGTATAT 57.626 29.630 0.00 0.00 31.75 0.86
3737 4180 7.902032 TGCGTGTAACTCTTTGTATATTTAGC 58.098 34.615 0.00 0.00 31.75 3.09
3738 4181 7.762615 TGCGTGTAACTCTTTGTATATTTAGCT 59.237 33.333 0.00 0.00 31.75 3.32
3739 4182 8.056571 GCGTGTAACTCTTTGTATATTTAGCTG 58.943 37.037 0.00 0.00 31.75 4.24
3740 4183 8.056571 CGTGTAACTCTTTGTATATTTAGCTGC 58.943 37.037 0.00 0.00 31.75 5.25
3741 4184 8.879759 GTGTAACTCTTTGTATATTTAGCTGCA 58.120 33.333 1.02 0.00 0.00 4.41
3742 4185 9.613428 TGTAACTCTTTGTATATTTAGCTGCAT 57.387 29.630 1.02 0.00 0.00 3.96
3746 4189 9.347240 ACTCTTTGTATATTTAGCTGCATCATT 57.653 29.630 1.02 0.00 0.00 2.57
3782 4225 2.287248 GGCATAGAAAAGGAAGCGCATC 60.287 50.000 11.47 7.28 0.00 3.91
3850 4293 9.166173 CTATGATTCGTCTCTATCTCTCTTGAT 57.834 37.037 0.00 0.00 0.00 2.57
3872 4315 8.082672 TGATCAGAAAATGACTTCTATCCAGA 57.917 34.615 0.00 0.00 41.91 3.86
3874 4317 6.333416 TCAGAAAATGACTTCTATCCAGACG 58.667 40.000 0.00 0.00 33.81 4.18
3883 4421 0.249238 CTATCCAGACGGTCAGCTGC 60.249 60.000 9.47 4.04 0.00 5.25
3901 4439 3.924686 GCTGCAAACATTGGATCAAAGAG 59.075 43.478 0.00 0.00 0.00 2.85
4010 4554 9.440784 GTTGAGAATTAGAGTAGAGTTCATACG 57.559 37.037 0.00 0.00 0.00 3.06
4016 4561 5.238006 AGAGTAGAGTTCATACGTGAAGC 57.762 43.478 0.00 0.00 44.58 3.86
4026 4571 3.673338 TCATACGTGAAGCTTCAGTTTCG 59.327 43.478 29.13 27.50 37.97 3.46
4044 4589 6.775826 GTTTCGAAACTGTGTGCTCATGCA 62.776 45.833 29.27 0.00 40.19 3.96
4070 4615 4.260132 CGAGAAGTTTCAGCATGCTCATAC 60.260 45.833 19.68 11.12 34.76 2.39
4075 4620 2.609427 TCAGCATGCTCATACTGACC 57.391 50.000 19.68 0.00 36.55 4.02
4076 4621 1.202452 TCAGCATGCTCATACTGACCG 60.202 52.381 19.68 2.25 36.55 4.79
4077 4622 0.105593 AGCATGCTCATACTGACCGG 59.894 55.000 16.30 0.00 0.00 5.28
4078 4623 1.502163 GCATGCTCATACTGACCGGC 61.502 60.000 11.37 0.00 0.00 6.13
4079 4624 0.179076 CATGCTCATACTGACCGGCA 60.179 55.000 0.00 0.00 31.23 5.69
4080 4625 0.179073 ATGCTCATACTGACCGGCAC 60.179 55.000 0.00 0.00 29.76 5.01
4081 4626 1.218047 GCTCATACTGACCGGCACA 59.782 57.895 0.00 0.63 0.00 4.57
4082 4627 1.084370 GCTCATACTGACCGGCACAC 61.084 60.000 0.00 0.00 0.00 3.82
4083 4628 0.246360 CTCATACTGACCGGCACACA 59.754 55.000 0.00 0.00 0.00 3.72
4084 4629 0.901827 TCATACTGACCGGCACACAT 59.098 50.000 0.00 0.00 0.00 3.21
4085 4630 1.134818 TCATACTGACCGGCACACATC 60.135 52.381 0.00 0.00 0.00 3.06
4086 4631 1.134699 CATACTGACCGGCACACATCT 60.135 52.381 0.00 0.00 0.00 2.90
4087 4632 0.973632 TACTGACCGGCACACATCTT 59.026 50.000 0.00 0.00 0.00 2.40
4088 4633 0.108585 ACTGACCGGCACACATCTTT 59.891 50.000 0.00 0.00 0.00 2.52
4089 4634 1.238439 CTGACCGGCACACATCTTTT 58.762 50.000 0.00 0.00 0.00 2.27
4090 4635 1.608590 CTGACCGGCACACATCTTTTT 59.391 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.627550 GCTCCTTTGACGACGAAGCC 61.628 60.000 0.00 0.00 36.49 4.35
2 3 1.063806 CAGCTCCTTTGACGACGAAG 58.936 55.000 0.00 7.78 37.29 3.79
3 4 0.319555 CCAGCTCCTTTGACGACGAA 60.320 55.000 0.00 0.00 0.00 3.85
4 5 1.289066 CCAGCTCCTTTGACGACGA 59.711 57.895 0.00 0.00 0.00 4.20
5 6 2.383527 GCCAGCTCCTTTGACGACG 61.384 63.158 0.00 0.00 0.00 5.12
6 7 2.035442 GGCCAGCTCCTTTGACGAC 61.035 63.158 0.00 0.00 0.00 4.34
7 8 2.347490 GGCCAGCTCCTTTGACGA 59.653 61.111 0.00 0.00 0.00 4.20
8 9 3.121030 CGGCCAGCTCCTTTGACG 61.121 66.667 2.24 0.00 0.00 4.35
9 10 2.747855 CCGGCCAGCTCCTTTGAC 60.748 66.667 2.24 0.00 0.00 3.18
10 11 4.033776 CCCGGCCAGCTCCTTTGA 62.034 66.667 2.24 0.00 0.00 2.69
33 34 4.704833 CAGCACCACCTCACCCCG 62.705 72.222 0.00 0.00 0.00 5.73
34 35 3.249189 TCAGCACCACCTCACCCC 61.249 66.667 0.00 0.00 0.00 4.95
35 36 2.032681 GTCAGCACCACCTCACCC 59.967 66.667 0.00 0.00 0.00 4.61
36 37 2.357517 CGTCAGCACCACCTCACC 60.358 66.667 0.00 0.00 0.00 4.02
37 38 2.357517 CCGTCAGCACCACCTCAC 60.358 66.667 0.00 0.00 0.00 3.51
38 39 4.314440 GCCGTCAGCACCACCTCA 62.314 66.667 0.00 0.00 42.97 3.86
53 54 3.837570 AACTTCCCCCAACGTCGCC 62.838 63.158 0.00 0.00 0.00 5.54
54 55 2.281276 AACTTCCCCCAACGTCGC 60.281 61.111 0.00 0.00 0.00 5.19
55 56 2.613506 GCAACTTCCCCCAACGTCG 61.614 63.158 0.00 0.00 0.00 5.12
56 57 2.613506 CGCAACTTCCCCCAACGTC 61.614 63.158 0.00 0.00 0.00 4.34
57 58 2.593436 CGCAACTTCCCCCAACGT 60.593 61.111 0.00 0.00 0.00 3.99
58 59 3.361977 CCGCAACTTCCCCCAACG 61.362 66.667 0.00 0.00 0.00 4.10
59 60 2.203437 ACCGCAACTTCCCCCAAC 60.203 61.111 0.00 0.00 0.00 3.77
60 61 2.203422 CACCGCAACTTCCCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
61 62 4.278513 CCACCGCAACTTCCCCCA 62.279 66.667 0.00 0.00 0.00 4.96
101 102 3.411351 CACCTTCCAACGTCGCCG 61.411 66.667 0.00 0.00 40.83 6.46
102 103 3.047877 CCACCTTCCAACGTCGCC 61.048 66.667 0.00 0.00 0.00 5.54
103 104 3.723348 GCCACCTTCCAACGTCGC 61.723 66.667 0.00 0.00 0.00 5.19
104 105 3.411351 CGCCACCTTCCAACGTCG 61.411 66.667 0.00 0.00 0.00 5.12
105 106 2.280592 ACGCCACCTTCCAACGTC 60.281 61.111 0.00 0.00 29.64 4.34
106 107 2.590575 CACGCCACCTTCCAACGT 60.591 61.111 0.00 0.00 37.47 3.99
107 108 4.025401 GCACGCCACCTTCCAACG 62.025 66.667 0.00 0.00 0.00 4.10
108 109 2.594592 AGCACGCCACCTTCCAAC 60.595 61.111 0.00 0.00 0.00 3.77
109 110 2.594303 CAGCACGCCACCTTCCAA 60.594 61.111 0.00 0.00 0.00 3.53
112 113 3.730761 CTGCAGCACGCCACCTTC 61.731 66.667 0.00 0.00 41.33 3.46
119 120 3.976701 ATACCACCCTGCAGCACGC 62.977 63.158 8.66 0.00 42.89 5.34
120 121 2.108514 CATACCACCCTGCAGCACG 61.109 63.158 8.66 0.00 0.00 5.34
121 122 2.409870 GCATACCACCCTGCAGCAC 61.410 63.158 8.66 0.00 38.28 4.40
122 123 2.045045 GCATACCACCCTGCAGCA 60.045 61.111 8.66 0.00 38.28 4.41
123 124 2.117156 CAGCATACCACCCTGCAGC 61.117 63.158 8.66 0.00 40.88 5.25
124 125 1.452651 CCAGCATACCACCCTGCAG 60.453 63.158 6.78 6.78 40.88 4.41
125 126 2.676608 CCAGCATACCACCCTGCA 59.323 61.111 0.00 0.00 40.88 4.41
126 127 2.830370 GCCAGCATACCACCCTGC 60.830 66.667 0.00 0.00 38.69 4.85
127 128 2.329539 ATCGCCAGCATACCACCCTG 62.330 60.000 0.00 0.00 0.00 4.45
128 129 1.635817 AATCGCCAGCATACCACCCT 61.636 55.000 0.00 0.00 0.00 4.34
129 130 1.152963 AATCGCCAGCATACCACCC 60.153 57.895 0.00 0.00 0.00 4.61
130 131 1.447317 CCAATCGCCAGCATACCACC 61.447 60.000 0.00 0.00 0.00 4.61
131 132 1.447317 CCCAATCGCCAGCATACCAC 61.447 60.000 0.00 0.00 0.00 4.16
132 133 1.152984 CCCAATCGCCAGCATACCA 60.153 57.895 0.00 0.00 0.00 3.25
133 134 1.152963 ACCCAATCGCCAGCATACC 60.153 57.895 0.00 0.00 0.00 2.73
134 135 1.447317 CCACCCAATCGCCAGCATAC 61.447 60.000 0.00 0.00 0.00 2.39
135 136 1.152984 CCACCCAATCGCCAGCATA 60.153 57.895 0.00 0.00 0.00 3.14
136 137 2.440796 CCACCCAATCGCCAGCAT 60.441 61.111 0.00 0.00 0.00 3.79
137 138 4.738998 CCCACCCAATCGCCAGCA 62.739 66.667 0.00 0.00 0.00 4.41
159 160 4.347453 CAACAGCAAGCACCCGGC 62.347 66.667 0.00 0.00 45.30 6.13
160 161 1.973281 ATCAACAGCAAGCACCCGG 60.973 57.895 0.00 0.00 0.00 5.73
161 162 1.210931 CATCAACAGCAAGCACCCG 59.789 57.895 0.00 0.00 0.00 5.28
162 163 1.588082 CCATCAACAGCAAGCACCC 59.412 57.895 0.00 0.00 0.00 4.61
163 164 0.895100 TCCCATCAACAGCAAGCACC 60.895 55.000 0.00 0.00 0.00 5.01
164 165 0.524862 CTCCCATCAACAGCAAGCAC 59.475 55.000 0.00 0.00 0.00 4.40
165 166 0.609957 CCTCCCATCAACAGCAAGCA 60.610 55.000 0.00 0.00 0.00 3.91
166 167 0.322816 TCCTCCCATCAACAGCAAGC 60.323 55.000 0.00 0.00 0.00 4.01
167 168 2.089980 CTTCCTCCCATCAACAGCAAG 58.910 52.381 0.00 0.00 0.00 4.01
168 169 1.704628 TCTTCCTCCCATCAACAGCAA 59.295 47.619 0.00 0.00 0.00 3.91
169 170 1.280133 CTCTTCCTCCCATCAACAGCA 59.720 52.381 0.00 0.00 0.00 4.41
170 171 1.556911 TCTCTTCCTCCCATCAACAGC 59.443 52.381 0.00 0.00 0.00 4.40
171 172 3.988976 TTCTCTTCCTCCCATCAACAG 57.011 47.619 0.00 0.00 0.00 3.16
396 397 3.886505 TCCAAATAAACGTGCCTTCACTT 59.113 39.130 0.00 0.00 40.99 3.16
397 398 3.482436 TCCAAATAAACGTGCCTTCACT 58.518 40.909 0.00 0.00 40.99 3.41
398 399 3.907894 TCCAAATAAACGTGCCTTCAC 57.092 42.857 0.00 0.00 39.78 3.18
399 400 4.331968 AGATCCAAATAAACGTGCCTTCA 58.668 39.130 0.00 0.00 0.00 3.02
400 401 4.965119 AGATCCAAATAAACGTGCCTTC 57.035 40.909 0.00 0.00 0.00 3.46
401 402 7.404671 AATAAGATCCAAATAAACGTGCCTT 57.595 32.000 0.00 0.00 0.00 4.35
402 403 7.257722 CAAATAAGATCCAAATAAACGTGCCT 58.742 34.615 0.00 0.00 0.00 4.75
403 404 6.475402 CCAAATAAGATCCAAATAAACGTGCC 59.525 38.462 0.00 0.00 0.00 5.01
404 405 7.254852 TCCAAATAAGATCCAAATAAACGTGC 58.745 34.615 0.00 0.00 0.00 5.34
405 406 9.450807 GATCCAAATAAGATCCAAATAAACGTG 57.549 33.333 0.00 0.00 35.16 4.49
406 407 8.342634 CGATCCAAATAAGATCCAAATAAACGT 58.657 33.333 0.00 0.00 37.45 3.99
407 408 7.803189 CCGATCCAAATAAGATCCAAATAAACG 59.197 37.037 0.00 0.00 37.45 3.60
408 409 8.846211 TCCGATCCAAATAAGATCCAAATAAAC 58.154 33.333 0.00 0.00 37.45 2.01
409 410 8.988546 TCCGATCCAAATAAGATCCAAATAAA 57.011 30.769 0.00 0.00 37.45 1.40
410 411 7.665559 CCTCCGATCCAAATAAGATCCAAATAA 59.334 37.037 0.00 0.00 37.45 1.40
411 412 7.168219 CCTCCGATCCAAATAAGATCCAAATA 58.832 38.462 0.00 0.00 37.45 1.40
412 413 6.006449 CCTCCGATCCAAATAAGATCCAAAT 58.994 40.000 0.00 0.00 37.45 2.32
413 414 5.376625 CCTCCGATCCAAATAAGATCCAAA 58.623 41.667 0.00 0.00 37.45 3.28
414 415 4.746702 GCCTCCGATCCAAATAAGATCCAA 60.747 45.833 0.00 0.00 37.45 3.53
415 416 3.244561 GCCTCCGATCCAAATAAGATCCA 60.245 47.826 0.00 0.00 37.45 3.41
416 417 3.339141 GCCTCCGATCCAAATAAGATCC 58.661 50.000 0.00 0.00 37.45 3.36
417 418 2.996621 CGCCTCCGATCCAAATAAGATC 59.003 50.000 0.00 0.00 37.39 2.75
418 419 2.368875 ACGCCTCCGATCCAAATAAGAT 59.631 45.455 0.00 0.00 38.29 2.40
419 420 1.760613 ACGCCTCCGATCCAAATAAGA 59.239 47.619 0.00 0.00 38.29 2.10
420 421 2.240493 ACGCCTCCGATCCAAATAAG 57.760 50.000 0.00 0.00 38.29 1.73
421 422 2.285083 CAACGCCTCCGATCCAAATAA 58.715 47.619 0.00 0.00 38.29 1.40
422 423 1.474320 CCAACGCCTCCGATCCAAATA 60.474 52.381 0.00 0.00 38.29 1.40
423 424 0.748005 CCAACGCCTCCGATCCAAAT 60.748 55.000 0.00 0.00 38.29 2.32
424 425 1.376683 CCAACGCCTCCGATCCAAA 60.377 57.895 0.00 0.00 38.29 3.28
425 426 2.267642 CCAACGCCTCCGATCCAA 59.732 61.111 0.00 0.00 38.29 3.53
426 427 3.781307 CCCAACGCCTCCGATCCA 61.781 66.667 0.00 0.00 38.29 3.41
428 429 4.162690 AGCCCAACGCCTCCGATC 62.163 66.667 0.00 0.00 38.78 3.69
429 430 4.473520 CAGCCCAACGCCTCCGAT 62.474 66.667 0.00 0.00 38.78 4.18
432 433 3.553095 AAGTCAGCCCAACGCCTCC 62.553 63.158 0.00 0.00 38.78 4.30
433 434 1.172812 AAAAGTCAGCCCAACGCCTC 61.173 55.000 0.00 0.00 38.78 4.70
434 435 1.152756 AAAAGTCAGCCCAACGCCT 60.153 52.632 0.00 0.00 38.78 5.52
435 436 1.007387 CAAAAGTCAGCCCAACGCC 60.007 57.895 0.00 0.00 38.78 5.68
436 437 0.594796 CACAAAAGTCAGCCCAACGC 60.595 55.000 0.00 0.00 37.98 4.84
437 438 0.738389 ACACAAAAGTCAGCCCAACG 59.262 50.000 0.00 0.00 0.00 4.10
438 439 1.067060 GGACACAAAAGTCAGCCCAAC 59.933 52.381 0.00 0.00 40.29 3.77
439 440 1.398692 GGACACAAAAGTCAGCCCAA 58.601 50.000 0.00 0.00 40.29 4.12
440 441 0.817634 CGGACACAAAAGTCAGCCCA 60.818 55.000 0.00 0.00 40.29 5.36
441 442 0.818040 ACGGACACAAAAGTCAGCCC 60.818 55.000 0.00 0.00 40.29 5.19
442 443 0.586802 GACGGACACAAAAGTCAGCC 59.413 55.000 0.00 0.00 40.29 4.85
443 444 1.583054 AGACGGACACAAAAGTCAGC 58.417 50.000 0.00 0.00 40.29 4.26
444 445 3.001330 GTCAAGACGGACACAAAAGTCAG 59.999 47.826 0.00 0.00 40.29 3.51
445 446 2.933906 GTCAAGACGGACACAAAAGTCA 59.066 45.455 0.00 0.00 40.29 3.41
446 447 2.287103 GGTCAAGACGGACACAAAAGTC 59.713 50.000 0.00 0.00 39.59 3.01
447 448 2.285977 GGTCAAGACGGACACAAAAGT 58.714 47.619 0.00 0.00 39.59 2.66
448 449 1.602377 GGGTCAAGACGGACACAAAAG 59.398 52.381 0.00 0.00 40.95 2.27
449 450 1.670791 GGGTCAAGACGGACACAAAA 58.329 50.000 0.00 0.00 40.95 2.44
450 451 3.390003 GGGTCAAGACGGACACAAA 57.610 52.632 0.00 0.00 40.95 2.83
453 454 1.670791 TTTTGGGTCAAGACGGACAC 58.329 50.000 0.00 0.00 41.65 3.67
454 455 2.158740 TCATTTTGGGTCAAGACGGACA 60.159 45.455 0.00 0.00 39.59 4.02
455 456 2.500229 TCATTTTGGGTCAAGACGGAC 58.500 47.619 0.00 0.00 37.06 4.79
456 457 2.882137 GTTCATTTTGGGTCAAGACGGA 59.118 45.455 0.00 0.00 0.00 4.69
457 458 2.030274 GGTTCATTTTGGGTCAAGACGG 60.030 50.000 0.00 0.00 0.00 4.79
458 459 2.350388 CGGTTCATTTTGGGTCAAGACG 60.350 50.000 0.00 0.00 0.00 4.18
459 460 2.030274 CCGGTTCATTTTGGGTCAAGAC 60.030 50.000 0.00 0.00 0.00 3.01
460 461 2.235016 CCGGTTCATTTTGGGTCAAGA 58.765 47.619 0.00 0.00 0.00 3.02
461 462 1.960689 ACCGGTTCATTTTGGGTCAAG 59.039 47.619 0.00 0.00 0.00 3.02
462 463 1.683917 CACCGGTTCATTTTGGGTCAA 59.316 47.619 2.97 0.00 0.00 3.18
463 464 1.133761 TCACCGGTTCATTTTGGGTCA 60.134 47.619 2.97 0.00 0.00 4.02
464 465 1.611519 TCACCGGTTCATTTTGGGTC 58.388 50.000 2.97 0.00 0.00 4.46
465 466 2.074729 TTCACCGGTTCATTTTGGGT 57.925 45.000 2.97 0.00 0.00 4.51
466 467 3.324993 CATTTCACCGGTTCATTTTGGG 58.675 45.455 2.97 0.00 0.00 4.12
467 468 3.324993 CCATTTCACCGGTTCATTTTGG 58.675 45.455 2.97 3.83 0.00 3.28
468 469 3.324993 CCCATTTCACCGGTTCATTTTG 58.675 45.455 2.97 0.00 0.00 2.44
469 470 2.301583 CCCCATTTCACCGGTTCATTTT 59.698 45.455 2.97 0.00 0.00 1.82
470 471 1.899142 CCCCATTTCACCGGTTCATTT 59.101 47.619 2.97 0.00 0.00 2.32
471 472 1.203125 ACCCCATTTCACCGGTTCATT 60.203 47.619 2.97 0.00 0.00 2.57
472 473 0.407918 ACCCCATTTCACCGGTTCAT 59.592 50.000 2.97 0.00 0.00 2.57
473 474 0.186386 AACCCCATTTCACCGGTTCA 59.814 50.000 2.97 0.00 33.22 3.18
474 475 0.601057 CAACCCCATTTCACCGGTTC 59.399 55.000 2.97 0.00 36.45 3.62
475 476 0.186386 TCAACCCCATTTCACCGGTT 59.814 50.000 2.97 0.00 39.18 4.44
476 477 0.538746 GTCAACCCCATTTCACCGGT 60.539 55.000 0.00 0.00 0.00 5.28
477 478 1.582610 CGTCAACCCCATTTCACCGG 61.583 60.000 0.00 0.00 0.00 5.28
478 479 1.873165 CGTCAACCCCATTTCACCG 59.127 57.895 0.00 0.00 0.00 4.94
479 480 1.584495 GCGTCAACCCCATTTCACC 59.416 57.895 0.00 0.00 0.00 4.02
480 481 1.209127 CGCGTCAACCCCATTTCAC 59.791 57.895 0.00 0.00 0.00 3.18
481 482 0.820074 AACGCGTCAACCCCATTTCA 60.820 50.000 14.44 0.00 0.00 2.69
482 483 1.129811 CTAACGCGTCAACCCCATTTC 59.870 52.381 14.44 0.00 0.00 2.17
483 484 1.161843 CTAACGCGTCAACCCCATTT 58.838 50.000 14.44 0.00 0.00 2.32
484 485 0.322322 TCTAACGCGTCAACCCCATT 59.678 50.000 14.44 0.00 0.00 3.16
485 486 0.108329 CTCTAACGCGTCAACCCCAT 60.108 55.000 14.44 0.00 0.00 4.00
486 487 1.290955 CTCTAACGCGTCAACCCCA 59.709 57.895 14.44 0.00 0.00 4.96
487 488 0.735287 GACTCTAACGCGTCAACCCC 60.735 60.000 14.44 0.00 0.00 4.95
488 489 1.069378 CGACTCTAACGCGTCAACCC 61.069 60.000 14.44 0.00 0.00 4.11
489 490 1.671880 GCGACTCTAACGCGTCAACC 61.672 60.000 14.44 0.00 46.05 3.77
490 491 1.694962 GCGACTCTAACGCGTCAAC 59.305 57.895 14.44 0.31 46.05 3.18
491 492 4.141883 GCGACTCTAACGCGTCAA 57.858 55.556 14.44 2.53 46.05 3.18
497 498 1.467734 AGTGTGGTAGCGACTCTAACG 59.532 52.381 0.00 0.00 37.81 3.18
498 499 2.486982 TCAGTGTGGTAGCGACTCTAAC 59.513 50.000 0.00 0.00 35.51 2.34
499 500 2.786777 TCAGTGTGGTAGCGACTCTAA 58.213 47.619 0.00 0.00 0.00 2.10
500 501 2.484742 TCAGTGTGGTAGCGACTCTA 57.515 50.000 0.00 0.00 0.00 2.43
501 502 1.474478 CATCAGTGTGGTAGCGACTCT 59.526 52.381 0.00 0.00 0.00 3.24
502 503 1.472878 TCATCAGTGTGGTAGCGACTC 59.527 52.381 0.00 0.00 0.00 3.36
503 504 1.545841 TCATCAGTGTGGTAGCGACT 58.454 50.000 0.00 0.00 0.00 4.18
504 505 2.159240 TCATCATCAGTGTGGTAGCGAC 60.159 50.000 0.00 0.00 0.00 5.19
505 506 2.099405 TCATCATCAGTGTGGTAGCGA 58.901 47.619 0.00 0.00 0.00 4.93
506 507 2.584492 TCATCATCAGTGTGGTAGCG 57.416 50.000 0.00 0.00 0.00 4.26
507 508 5.050769 CGTAATTCATCATCAGTGTGGTAGC 60.051 44.000 0.00 0.00 0.00 3.58
508 509 5.463392 CCGTAATTCATCATCAGTGTGGTAG 59.537 44.000 0.00 0.00 0.00 3.18
509 510 5.128008 TCCGTAATTCATCATCAGTGTGGTA 59.872 40.000 0.00 0.00 0.00 3.25
510 511 4.081142 TCCGTAATTCATCATCAGTGTGGT 60.081 41.667 0.00 0.00 0.00 4.16
511 512 4.271049 GTCCGTAATTCATCATCAGTGTGG 59.729 45.833 0.00 0.00 0.00 4.17
512 513 4.271049 GGTCCGTAATTCATCATCAGTGTG 59.729 45.833 0.00 0.00 0.00 3.82
513 514 4.162320 AGGTCCGTAATTCATCATCAGTGT 59.838 41.667 0.00 0.00 0.00 3.55
514 515 4.697514 AGGTCCGTAATTCATCATCAGTG 58.302 43.478 0.00 0.00 0.00 3.66
515 516 5.359194 AAGGTCCGTAATTCATCATCAGT 57.641 39.130 0.00 0.00 0.00 3.41
516 517 4.752101 GGAAGGTCCGTAATTCATCATCAG 59.248 45.833 0.00 0.00 0.00 2.90
517 518 4.703897 GGAAGGTCCGTAATTCATCATCA 58.296 43.478 0.00 0.00 0.00 3.07
549 550 5.378099 GCAGATGATGATGCACACTCTGC 62.378 52.174 20.75 20.75 44.84 4.26
550 551 2.288186 GCAGATGATGATGCACACTCTG 59.712 50.000 0.00 5.03 42.11 3.35
551 552 2.093128 TGCAGATGATGATGCACACTCT 60.093 45.455 0.00 0.00 46.97 3.24
552 553 2.285977 TGCAGATGATGATGCACACTC 58.714 47.619 0.00 0.00 46.97 3.51
553 554 2.413310 TGCAGATGATGATGCACACT 57.587 45.000 0.00 0.00 46.97 3.55
558 559 5.175126 GCAAGTATTTTGCAGATGATGATGC 59.825 40.000 6.98 0.00 44.34 3.91
559 560 6.749216 GCAAGTATTTTGCAGATGATGATG 57.251 37.500 6.98 0.00 44.34 3.07
570 571 7.308435 ACAGTCATAAAGAGCAAGTATTTTGC 58.692 34.615 3.80 3.80 45.22 3.68
573 574 9.890629 TGATACAGTCATAAAGAGCAAGTATTT 57.109 29.630 0.00 0.00 0.00 1.40
574 575 9.890629 TTGATACAGTCATAAAGAGCAAGTATT 57.109 29.630 0.00 0.00 36.54 1.89
575 576 9.890629 TTTGATACAGTCATAAAGAGCAAGTAT 57.109 29.630 0.00 0.00 36.54 2.12
576 577 9.719355 TTTTGATACAGTCATAAAGAGCAAGTA 57.281 29.630 0.00 0.00 36.54 2.24
577 578 8.621532 TTTTGATACAGTCATAAAGAGCAAGT 57.378 30.769 0.00 0.00 36.54 3.16
637 638 7.153315 TCCTACTATGTACTCACTCTGTATCG 58.847 42.308 0.00 0.00 0.00 2.92
642 643 7.153315 TCGTATCCTACTATGTACTCACTCTG 58.847 42.308 0.00 0.00 0.00 3.35
647 648 8.810041 TGATACTCGTATCCTACTATGTACTCA 58.190 37.037 13.00 0.00 40.84 3.41
648 649 9.650539 TTGATACTCGTATCCTACTATGTACTC 57.349 37.037 13.00 0.00 40.84 2.59
688 689 0.717224 CGGTGTTGTATTCCGTTCCG 59.283 55.000 0.00 0.00 39.51 4.30
693 694 1.067425 TGAGACCGGTGTTGTATTCCG 60.067 52.381 14.63 0.00 43.30 4.30
696 697 3.252458 GCTTTTGAGACCGGTGTTGTATT 59.748 43.478 14.63 0.00 0.00 1.89
741 742 2.029649 GCAGCACACAATCCAACATTCT 60.030 45.455 0.00 0.00 0.00 2.40
781 782 1.134946 GGGAGAATTTTCCACCATGCG 59.865 52.381 16.35 0.00 39.09 4.73
805 806 0.991920 TTCCTCTTGGATGGGTGGAC 59.008 55.000 0.00 0.00 42.81 4.02
810 811 3.521126 TCTTCTTCTTCCTCTTGGATGGG 59.479 47.826 0.00 0.00 42.81 4.00
827 836 3.881713 GCTCCTTCCTCTCTCCTTCTTCT 60.882 52.174 0.00 0.00 0.00 2.85
1436 1713 4.154347 GCCAGGAGGAGCGTGAGG 62.154 72.222 0.00 0.00 36.89 3.86
1598 1887 3.834799 GTGGCGAGGTAGACGGGG 61.835 72.222 0.00 0.00 0.00 5.73
1601 1890 1.139095 GAAGGTGGCGAGGTAGACG 59.861 63.158 0.00 0.00 0.00 4.18
2003 2292 3.403057 CCAGTGTCAACGACGGCG 61.403 66.667 10.39 10.39 44.79 6.46
2012 2301 3.986006 GCGACGGGTCCAGTGTCA 61.986 66.667 0.00 0.00 32.91 3.58
2078 2367 4.500116 GCAGCGGTCGAGAGGTCC 62.500 72.222 0.00 0.00 0.00 4.46
2531 2820 0.179936 GGAAGCTCATGTCCTCCAGG 59.820 60.000 0.00 0.00 0.00 4.45
2697 2986 1.000506 GTACACGTCAGCCTTCTCCAA 59.999 52.381 0.00 0.00 0.00 3.53
2708 2997 1.372499 GCCGAAGCTGTACACGTCA 60.372 57.895 0.00 0.00 35.50 4.35
3118 3407 7.420800 CCAAATCTCCTTGCATAATTAGTGAC 58.579 38.462 0.00 0.00 0.00 3.67
3199 3518 5.391629 GCTACAAAGAATTCCCTTGTTACGG 60.392 44.000 21.94 13.80 0.00 4.02
3200 3519 5.180492 TGCTACAAAGAATTCCCTTGTTACG 59.820 40.000 21.94 14.50 0.00 3.18
3314 3633 6.398918 ACCAAGTCAGATACAGTACATTGTC 58.601 40.000 0.00 0.00 32.56 3.18
3315 3634 6.360370 ACCAAGTCAGATACAGTACATTGT 57.640 37.500 0.00 0.00 35.09 2.71
3378 3821 8.641498 ACTGTTATTGATTCTTTTCCTGACAT 57.359 30.769 0.00 0.00 0.00 3.06
3405 3848 9.651718 CAGACTTCAATTCAAACACTAAAGTAC 57.348 33.333 0.00 0.00 0.00 2.73
3454 3897 2.166664 GCTGGTTTATGTCTCCGTCTCT 59.833 50.000 0.00 0.00 0.00 3.10
3459 3902 0.174845 TCGGCTGGTTTATGTCTCCG 59.825 55.000 0.00 0.00 37.00 4.63
3465 3908 2.016318 TGATTGCTCGGCTGGTTTATG 58.984 47.619 0.00 0.00 0.00 1.90
3510 3953 1.400494 CCACGTATTGCTGGCTAAACC 59.600 52.381 0.00 0.00 39.84 3.27
3520 3963 1.308047 TGATGATGCCCACGTATTGC 58.692 50.000 0.00 0.00 0.00 3.56
3550 3993 6.939551 TCGTTTGTAAGTGTAGCATTACTC 57.060 37.500 0.00 0.00 33.86 2.59
3551 3994 7.900782 AATCGTTTGTAAGTGTAGCATTACT 57.099 32.000 0.00 0.00 33.86 2.24
3552 3995 9.469239 GTAAATCGTTTGTAAGTGTAGCATTAC 57.531 33.333 0.00 0.00 33.42 1.89
3553 3996 9.205719 TGTAAATCGTTTGTAAGTGTAGCATTA 57.794 29.630 0.00 0.00 0.00 1.90
3554 3997 8.090250 TGTAAATCGTTTGTAAGTGTAGCATT 57.910 30.769 0.00 0.00 0.00 3.56
3555 3998 7.661127 TGTAAATCGTTTGTAAGTGTAGCAT 57.339 32.000 0.00 0.00 0.00 3.79
3556 3999 7.307514 CCTTGTAAATCGTTTGTAAGTGTAGCA 60.308 37.037 0.00 0.00 0.00 3.49
3557 4000 7.013529 CCTTGTAAATCGTTTGTAAGTGTAGC 58.986 38.462 0.00 0.00 0.00 3.58
3558 4001 8.080083 ACCTTGTAAATCGTTTGTAAGTGTAG 57.920 34.615 0.00 0.00 0.00 2.74
3559 4002 8.436046 AACCTTGTAAATCGTTTGTAAGTGTA 57.564 30.769 0.00 0.00 0.00 2.90
3560 4003 6.930667 ACCTTGTAAATCGTTTGTAAGTGT 57.069 33.333 0.00 0.00 0.00 3.55
3561 4004 8.623310 AAAACCTTGTAAATCGTTTGTAAGTG 57.377 30.769 0.00 0.00 31.20 3.16
3562 4005 9.720667 GTAAAACCTTGTAAATCGTTTGTAAGT 57.279 29.630 0.00 0.00 31.20 2.24
3563 4006 9.719279 TGTAAAACCTTGTAAATCGTTTGTAAG 57.281 29.630 0.00 0.00 31.20 2.34
3566 4009 8.983307 TTTGTAAAACCTTGTAAATCGTTTGT 57.017 26.923 0.00 0.00 31.20 2.83
3569 4012 9.089601 CCTTTTTGTAAAACCTTGTAAATCGTT 57.910 29.630 0.00 0.00 0.00 3.85
3570 4013 8.468399 TCCTTTTTGTAAAACCTTGTAAATCGT 58.532 29.630 0.00 0.00 0.00 3.73
3571 4014 8.859517 TCCTTTTTGTAAAACCTTGTAAATCG 57.140 30.769 0.00 0.00 0.00 3.34
3598 4041 9.649316 CTCCCCACCTATTAACCAATTAAATTA 57.351 33.333 0.00 0.00 33.98 1.40
3599 4042 7.567250 CCTCCCCACCTATTAACCAATTAAATT 59.433 37.037 0.00 0.00 33.98 1.82
3600 4043 7.073208 CCTCCCCACCTATTAACCAATTAAAT 58.927 38.462 0.00 0.00 33.98 1.40
3601 4044 6.436890 CCTCCCCACCTATTAACCAATTAAA 58.563 40.000 0.00 0.00 33.98 1.52
3602 4045 5.635290 GCCTCCCCACCTATTAACCAATTAA 60.635 44.000 0.00 0.00 34.78 1.40
3603 4046 4.141111 GCCTCCCCACCTATTAACCAATTA 60.141 45.833 0.00 0.00 0.00 1.40
3604 4047 3.373767 GCCTCCCCACCTATTAACCAATT 60.374 47.826 0.00 0.00 0.00 2.32
3605 4048 2.177016 GCCTCCCCACCTATTAACCAAT 59.823 50.000 0.00 0.00 0.00 3.16
3606 4049 1.567175 GCCTCCCCACCTATTAACCAA 59.433 52.381 0.00 0.00 0.00 3.67
3607 4050 1.218844 GCCTCCCCACCTATTAACCA 58.781 55.000 0.00 0.00 0.00 3.67
3608 4051 0.108019 CGCCTCCCCACCTATTAACC 59.892 60.000 0.00 0.00 0.00 2.85
3609 4052 0.108019 CCGCCTCCCCACCTATTAAC 59.892 60.000 0.00 0.00 0.00 2.01
3610 4053 1.702022 GCCGCCTCCCCACCTATTAA 61.702 60.000 0.00 0.00 0.00 1.40
3611 4054 2.144738 GCCGCCTCCCCACCTATTA 61.145 63.158 0.00 0.00 0.00 0.98
3612 4055 3.489513 GCCGCCTCCCCACCTATT 61.490 66.667 0.00 0.00 0.00 1.73
3626 4069 3.600410 ATTTTCAGGGGGTGGGCCG 62.600 63.158 0.00 0.00 34.97 6.13
3627 4070 1.685765 GATTTTCAGGGGGTGGGCC 60.686 63.158 0.00 0.00 0.00 5.80
3628 4071 0.972471 CTGATTTTCAGGGGGTGGGC 60.972 60.000 0.00 0.00 40.71 5.36
3629 4072 0.704076 TCTGATTTTCAGGGGGTGGG 59.296 55.000 4.78 0.00 44.39 4.61
3630 4073 2.134789 CTCTGATTTTCAGGGGGTGG 57.865 55.000 4.78 0.00 41.25 4.61
3635 4078 1.213926 CCTCCCCTCTGATTTTCAGGG 59.786 57.143 4.78 1.10 44.51 4.45
3636 4079 1.213926 CCCTCCCCTCTGATTTTCAGG 59.786 57.143 4.78 0.00 44.39 3.86
3637 4080 1.213926 CCCCTCCCCTCTGATTTTCAG 59.786 57.143 0.00 0.00 45.59 3.02
3638 4081 1.298953 CCCCTCCCCTCTGATTTTCA 58.701 55.000 0.00 0.00 0.00 2.69
3639 4082 0.553333 CCCCCTCCCCTCTGATTTTC 59.447 60.000 0.00 0.00 0.00 2.29
3640 4083 1.584717 GCCCCCTCCCCTCTGATTTT 61.585 60.000 0.00 0.00 0.00 1.82
3641 4084 2.009302 GCCCCCTCCCCTCTGATTT 61.009 63.158 0.00 0.00 0.00 2.17
3642 4085 2.368878 GCCCCCTCCCCTCTGATT 60.369 66.667 0.00 0.00 0.00 2.57
3643 4086 3.287954 TTGCCCCCTCCCCTCTGAT 62.288 63.158 0.00 0.00 0.00 2.90
3644 4087 3.950861 CTTGCCCCCTCCCCTCTGA 62.951 68.421 0.00 0.00 0.00 3.27
3645 4088 3.415087 CTTGCCCCCTCCCCTCTG 61.415 72.222 0.00 0.00 0.00 3.35
3646 4089 3.523681 AACTTGCCCCCTCCCCTCT 62.524 63.158 0.00 0.00 0.00 3.69
3647 4090 1.212250 TAAACTTGCCCCCTCCCCTC 61.212 60.000 0.00 0.00 0.00 4.30
3648 4091 0.555117 ATAAACTTGCCCCCTCCCCT 60.555 55.000 0.00 0.00 0.00 4.79
3649 4092 0.397114 CATAAACTTGCCCCCTCCCC 60.397 60.000 0.00 0.00 0.00 4.81
3650 4093 0.629058 TCATAAACTTGCCCCCTCCC 59.371 55.000 0.00 0.00 0.00 4.30
3651 4094 2.695147 CAATCATAAACTTGCCCCCTCC 59.305 50.000 0.00 0.00 0.00 4.30
3652 4095 2.695147 CCAATCATAAACTTGCCCCCTC 59.305 50.000 0.00 0.00 0.00 4.30
3653 4096 2.044353 ACCAATCATAAACTTGCCCCCT 59.956 45.455 0.00 0.00 0.00 4.79
3654 4097 2.466846 ACCAATCATAAACTTGCCCCC 58.533 47.619 0.00 0.00 0.00 5.40
3655 4098 4.709886 ACTAACCAATCATAAACTTGCCCC 59.290 41.667 0.00 0.00 0.00 5.80
3656 4099 5.914898 ACTAACCAATCATAAACTTGCCC 57.085 39.130 0.00 0.00 0.00 5.36
3657 4100 7.625828 ACTACTAACCAATCATAAACTTGCC 57.374 36.000 0.00 0.00 0.00 4.52
3658 4101 9.595823 TCTACTACTAACCAATCATAAACTTGC 57.404 33.333 0.00 0.00 0.00 4.01
3679 4122 9.349713 CACTGACTAGGATTCTTTCTATCTACT 57.650 37.037 0.00 0.00 0.00 2.57
3680 4123 9.127277 ACACTGACTAGGATTCTTTCTATCTAC 57.873 37.037 0.00 0.00 0.00 2.59
3681 4124 9.126151 CACACTGACTAGGATTCTTTCTATCTA 57.874 37.037 0.00 0.00 0.00 1.98
3682 4125 7.617723 ACACACTGACTAGGATTCTTTCTATCT 59.382 37.037 0.00 0.00 0.00 1.98
3683 4126 7.777095 ACACACTGACTAGGATTCTTTCTATC 58.223 38.462 0.00 0.00 0.00 2.08
3684 4127 7.726033 ACACACTGACTAGGATTCTTTCTAT 57.274 36.000 0.00 0.00 0.00 1.98
3685 4128 8.645814 TTACACACTGACTAGGATTCTTTCTA 57.354 34.615 0.00 0.00 0.00 2.10
3686 4129 7.540474 TTACACACTGACTAGGATTCTTTCT 57.460 36.000 0.00 0.00 0.00 2.52
3687 4130 8.660373 CAATTACACACTGACTAGGATTCTTTC 58.340 37.037 0.00 0.00 0.00 2.62
3688 4131 7.119846 GCAATTACACACTGACTAGGATTCTTT 59.880 37.037 0.00 0.00 0.00 2.52
3689 4132 6.595716 GCAATTACACACTGACTAGGATTCTT 59.404 38.462 0.00 0.00 0.00 2.52
3690 4133 6.109359 GCAATTACACACTGACTAGGATTCT 58.891 40.000 0.00 0.00 0.00 2.40
3691 4134 5.005779 CGCAATTACACACTGACTAGGATTC 59.994 44.000 0.00 0.00 0.00 2.52
3692 4135 4.870426 CGCAATTACACACTGACTAGGATT 59.130 41.667 0.00 0.00 0.00 3.01
3693 4136 4.081642 ACGCAATTACACACTGACTAGGAT 60.082 41.667 0.00 0.00 0.00 3.24
3694 4137 3.257375 ACGCAATTACACACTGACTAGGA 59.743 43.478 0.00 0.00 0.00 2.94
3695 4138 3.367932 CACGCAATTACACACTGACTAGG 59.632 47.826 0.00 0.00 0.00 3.02
3696 4139 3.987868 ACACGCAATTACACACTGACTAG 59.012 43.478 0.00 0.00 0.00 2.57
3697 4140 3.985008 ACACGCAATTACACACTGACTA 58.015 40.909 0.00 0.00 0.00 2.59
3698 4141 2.833794 ACACGCAATTACACACTGACT 58.166 42.857 0.00 0.00 0.00 3.41
3699 4142 4.210537 AGTTACACGCAATTACACACTGAC 59.789 41.667 0.00 0.00 0.00 3.51
3700 4143 4.373527 AGTTACACGCAATTACACACTGA 58.626 39.130 0.00 0.00 0.00 3.41
3701 4144 4.447724 AGAGTTACACGCAATTACACACTG 59.552 41.667 0.00 0.00 0.00 3.66
3702 4145 4.628074 AGAGTTACACGCAATTACACACT 58.372 39.130 0.00 0.00 0.00 3.55
3703 4146 4.985044 AGAGTTACACGCAATTACACAC 57.015 40.909 0.00 0.00 0.00 3.82
3704 4147 5.294799 ACAAAGAGTTACACGCAATTACACA 59.705 36.000 0.00 0.00 0.00 3.72
3705 4148 5.744490 ACAAAGAGTTACACGCAATTACAC 58.256 37.500 0.00 0.00 0.00 2.90
3706 4149 5.994887 ACAAAGAGTTACACGCAATTACA 57.005 34.783 0.00 0.00 0.00 2.41
3711 4154 8.385111 GCTAAATATACAAAGAGTTACACGCAA 58.615 33.333 0.00 0.00 0.00 4.85
3712 4155 7.762615 AGCTAAATATACAAAGAGTTACACGCA 59.237 33.333 0.00 0.00 0.00 5.24
3713 4156 8.056571 CAGCTAAATATACAAAGAGTTACACGC 58.943 37.037 0.00 0.00 0.00 5.34
3714 4157 8.056571 GCAGCTAAATATACAAAGAGTTACACG 58.943 37.037 0.00 0.00 0.00 4.49
3715 4158 8.879759 TGCAGCTAAATATACAAAGAGTTACAC 58.120 33.333 0.00 0.00 0.00 2.90
3716 4159 9.613428 ATGCAGCTAAATATACAAAGAGTTACA 57.387 29.630 0.00 0.00 0.00 2.41
3718 4161 9.830975 TGATGCAGCTAAATATACAAAGAGTTA 57.169 29.630 2.53 0.00 0.00 2.24
3719 4162 8.737168 TGATGCAGCTAAATATACAAAGAGTT 57.263 30.769 2.53 0.00 0.00 3.01
3720 4163 8.915057 ATGATGCAGCTAAATATACAAAGAGT 57.085 30.769 2.53 0.00 0.00 3.24
3721 4164 9.823098 GAATGATGCAGCTAAATATACAAAGAG 57.177 33.333 2.53 0.00 0.00 2.85
3722 4165 9.341078 TGAATGATGCAGCTAAATATACAAAGA 57.659 29.630 2.53 0.00 0.00 2.52
3723 4166 9.608617 CTGAATGATGCAGCTAAATATACAAAG 57.391 33.333 2.53 0.00 0.00 2.77
3724 4167 9.341078 TCTGAATGATGCAGCTAAATATACAAA 57.659 29.630 2.53 0.00 33.45 2.83
3725 4168 8.777413 GTCTGAATGATGCAGCTAAATATACAA 58.223 33.333 2.53 0.00 33.45 2.41
3726 4169 7.388776 GGTCTGAATGATGCAGCTAAATATACA 59.611 37.037 2.53 0.00 33.45 2.29
3727 4170 7.148340 GGGTCTGAATGATGCAGCTAAATATAC 60.148 40.741 2.53 0.00 33.45 1.47
3728 4171 6.881065 GGGTCTGAATGATGCAGCTAAATATA 59.119 38.462 2.53 0.00 33.45 0.86
3729 4172 5.709164 GGGTCTGAATGATGCAGCTAAATAT 59.291 40.000 2.53 0.00 33.45 1.28
3730 4173 5.065914 GGGTCTGAATGATGCAGCTAAATA 58.934 41.667 2.53 0.00 33.45 1.40
3731 4174 3.887716 GGGTCTGAATGATGCAGCTAAAT 59.112 43.478 2.53 0.00 33.45 1.40
3732 4175 3.282021 GGGTCTGAATGATGCAGCTAAA 58.718 45.455 2.53 0.00 33.45 1.85
3733 4176 2.239402 TGGGTCTGAATGATGCAGCTAA 59.761 45.455 2.53 0.00 33.45 3.09
3734 4177 1.839354 TGGGTCTGAATGATGCAGCTA 59.161 47.619 2.53 0.00 33.45 3.32
3735 4178 0.622136 TGGGTCTGAATGATGCAGCT 59.378 50.000 2.53 0.00 33.45 4.24
3736 4179 0.737219 GTGGGTCTGAATGATGCAGC 59.263 55.000 0.00 0.00 33.45 5.25
3737 4180 1.340308 TGGTGGGTCTGAATGATGCAG 60.340 52.381 0.00 0.00 34.71 4.41
3738 4181 0.697658 TGGTGGGTCTGAATGATGCA 59.302 50.000 0.00 0.00 0.00 3.96
3739 4182 1.065199 TCTGGTGGGTCTGAATGATGC 60.065 52.381 0.00 0.00 0.00 3.91
3740 4183 3.211865 CATCTGGTGGGTCTGAATGATG 58.788 50.000 0.00 0.00 0.00 3.07
3741 4184 2.174210 CCATCTGGTGGGTCTGAATGAT 59.826 50.000 0.00 0.00 44.79 2.45
3742 4185 1.561076 CCATCTGGTGGGTCTGAATGA 59.439 52.381 0.00 0.00 44.79 2.57
3743 4186 2.048444 CCATCTGGTGGGTCTGAATG 57.952 55.000 0.00 0.00 44.79 2.67
3782 4225 0.450583 TAGCACCAAGAGAGTACGCG 59.549 55.000 3.53 3.53 0.00 6.01
3795 4238 6.348132 GCCATTTGTTTGGTATTTTTAGCACC 60.348 38.462 0.00 0.00 39.11 5.01
3850 4293 6.333416 CGTCTGGATAGAAGTCATTTTCTGA 58.667 40.000 0.00 0.00 37.91 3.27
3872 4315 0.311790 CAATGTTTGCAGCTGACCGT 59.688 50.000 20.43 0.00 0.00 4.83
3874 4317 0.961019 TCCAATGTTTGCAGCTGACC 59.039 50.000 20.43 0.12 0.00 4.02
3883 4421 6.579666 TCTTCCTCTTTGATCCAATGTTTG 57.420 37.500 0.00 0.00 0.00 2.93
3901 4439 6.939622 AGAAACAAATCCAATCCAATCTTCC 58.060 36.000 0.00 0.00 0.00 3.46
3949 4489 1.131638 AGCACCAGGTCTGAACTGAA 58.868 50.000 23.81 0.00 38.20 3.02
3992 4536 6.598457 AGCTTCACGTATGAACTCTACTCTAA 59.402 38.462 0.00 0.00 40.01 2.10
3993 4537 6.114089 AGCTTCACGTATGAACTCTACTCTA 58.886 40.000 0.00 0.00 40.01 2.43
3999 4543 4.021894 ACTGAAGCTTCACGTATGAACTCT 60.022 41.667 25.16 0.00 40.01 3.24
4010 4554 4.537936 AGTTTCGAAACTGAAGCTTCAC 57.462 40.909 36.05 14.20 46.80 3.18
4036 4581 1.630244 AACTTCTCGCGTGCATGAGC 61.630 55.000 10.93 5.88 42.57 4.26
4044 4589 0.792640 CATGCTGAAACTTCTCGCGT 59.207 50.000 5.77 0.00 0.00 6.01
4045 4590 0.519999 GCATGCTGAAACTTCTCGCG 60.520 55.000 11.37 0.00 0.00 5.87
4070 4615 1.238439 AAAAGATGTGTGCCGGTCAG 58.762 50.000 1.90 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.