Multiple sequence alignment - TraesCS1D01G409100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G409100 chr1D 100.000 3386 0 0 1 3386 470933960 470930575 0.000000e+00 6253.0
1 TraesCS1D01G409100 chr1A 92.990 1398 75 8 510 1888 565144240 565142847 0.000000e+00 2017.0
2 TraesCS1D01G409100 chr1A 87.776 499 28 13 2913 3386 565142569 565142079 1.370000e-153 553.0
3 TraesCS1D01G409100 chr1A 86.312 526 49 7 1 512 565144517 565144001 4.940000e-153 551.0
4 TraesCS1D01G409100 chr1A 100.000 42 0 0 2509 2550 565142808 565142767 1.010000e-10 78.7
5 TraesCS1D01G409100 chr6B 85.458 1396 185 11 1000 2386 34806786 34805400 0.000000e+00 1437.0
6 TraesCS1D01G409100 chr6A 84.332 1385 198 14 1013 2386 20346476 20345100 0.000000e+00 1338.0
7 TraesCS1D01G409100 chr7D 84.950 1010 68 31 1551 2540 635623011 635622066 0.000000e+00 946.0
8 TraesCS1D01G409100 chr7D 87.154 506 62 1 1958 2460 635620438 635619933 3.790000e-159 571.0
9 TraesCS1D01G409100 chr7D 78.261 483 67 15 43 512 635637421 635636964 3.330000e-70 276.0
10 TraesCS1D01G409100 chr7D 84.364 275 33 9 544 816 635637165 635636899 9.320000e-66 261.0
11 TraesCS1D01G409100 chr7D 90.909 165 14 1 998 1162 635623171 635623008 1.580000e-53 220.0
12 TraesCS1D01G409100 chr3B 77.996 1377 228 50 1088 2416 686385779 686384430 0.000000e+00 795.0
13 TraesCS1D01G409100 chr3B 100.000 28 0 0 2903 2930 169950368 169950395 6.000000e-03 52.8
14 TraesCS1D01G409100 chr4B 78.069 1336 219 49 1086 2366 654892739 654894055 0.000000e+00 776.0
15 TraesCS1D01G409100 chr4B 79.841 1007 169 26 1083 2076 632321633 632322618 0.000000e+00 704.0
16 TraesCS1D01G409100 chr4B 84.064 251 33 7 2567 2815 90868787 90868542 5.650000e-58 235.0
17 TraesCS1D01G409100 chr4D 77.069 1426 241 47 999 2366 507665174 507666571 0.000000e+00 743.0
18 TraesCS1D01G409100 chr4D 100.000 30 0 0 117 146 397153061 397153090 4.720000e-04 56.5
19 TraesCS1D01G409100 chr2D 77.504 1338 236 50 1076 2367 152822140 152820822 0.000000e+00 743.0
20 TraesCS1D01G409100 chr2D 84.191 272 34 9 2554 2821 78010860 78010594 4.340000e-64 255.0
21 TraesCS1D01G409100 chr2B 77.455 1344 226 62 1076 2367 210703333 210702015 0.000000e+00 732.0
22 TraesCS1D01G409100 chr2B 84.064 251 34 6 2567 2815 35131033 35130787 1.570000e-58 237.0
23 TraesCS1D01G409100 chr2A 77.398 1345 228 61 1073 2367 148653842 148655160 0.000000e+00 730.0
24 TraesCS1D01G409100 chr5A 77.259 1328 235 39 1086 2366 692371677 692372984 0.000000e+00 717.0
25 TraesCS1D01G409100 chr7A 87.782 532 54 4 1933 2461 730418259 730418782 2.230000e-171 612.0
26 TraesCS1D01G409100 chrUn 75.188 931 192 28 1149 2061 60738869 60739778 1.460000e-108 403.0
27 TraesCS1D01G409100 chrUn 85.294 272 26 12 2550 2815 24293280 24293017 5.570000e-68 268.0
28 TraesCS1D01G409100 chrUn 75.819 397 81 11 1149 1536 349791009 349790619 1.600000e-43 187.0
29 TraesCS1D01G409100 chrUn 75.819 397 81 11 1149 1536 350871156 350870766 1.600000e-43 187.0
30 TraesCS1D01G409100 chr5D 81.948 349 50 9 5 350 553861787 553862125 1.990000e-72 283.0
31 TraesCS1D01G409100 chr5D 84.127 252 32 7 2567 2815 533643177 533643423 1.570000e-58 237.0
32 TraesCS1D01G409100 chr5D 82.609 276 37 11 2546 2815 203290093 203290363 2.030000e-57 233.0
33 TraesCS1D01G409100 chr4A 80.337 356 53 11 8 359 614679660 614679318 1.560000e-63 254.0
34 TraesCS1D01G409100 chr4A 84.861 251 32 6 2567 2815 655564366 655564612 7.260000e-62 248.0
35 TraesCS1D01G409100 chr3A 80.374 321 54 8 31 350 235809490 235809802 5.650000e-58 235.0
36 TraesCS1D01G409100 chr3A 84.190 253 29 10 2567 2815 459050889 459051134 5.650000e-58 235.0
37 TraesCS1D01G409100 chr5B 83.267 251 36 6 2567 2815 527839311 527839557 3.400000e-55 226.0
38 TraesCS1D01G409100 chr7B 77.406 239 47 6 2580 2817 332630996 332630764 5.890000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G409100 chr1D 470930575 470933960 3385 True 6253.000 6253 100.0000 1 3386 1 chr1D.!!$R1 3385
1 TraesCS1D01G409100 chr1A 565142079 565144517 2438 True 799.925 2017 91.7695 1 3386 4 chr1A.!!$R1 3385
2 TraesCS1D01G409100 chr6B 34805400 34806786 1386 True 1437.000 1437 85.4580 1000 2386 1 chr6B.!!$R1 1386
3 TraesCS1D01G409100 chr6A 20345100 20346476 1376 True 1338.000 1338 84.3320 1013 2386 1 chr6A.!!$R1 1373
4 TraesCS1D01G409100 chr7D 635619933 635623171 3238 True 579.000 946 87.6710 998 2540 3 chr7D.!!$R1 1542
5 TraesCS1D01G409100 chr7D 635636899 635637421 522 True 268.500 276 81.3125 43 816 2 chr7D.!!$R2 773
6 TraesCS1D01G409100 chr3B 686384430 686385779 1349 True 795.000 795 77.9960 1088 2416 1 chr3B.!!$R1 1328
7 TraesCS1D01G409100 chr4B 654892739 654894055 1316 False 776.000 776 78.0690 1086 2366 1 chr4B.!!$F2 1280
8 TraesCS1D01G409100 chr4B 632321633 632322618 985 False 704.000 704 79.8410 1083 2076 1 chr4B.!!$F1 993
9 TraesCS1D01G409100 chr4D 507665174 507666571 1397 False 743.000 743 77.0690 999 2366 1 chr4D.!!$F2 1367
10 TraesCS1D01G409100 chr2D 152820822 152822140 1318 True 743.000 743 77.5040 1076 2367 1 chr2D.!!$R2 1291
11 TraesCS1D01G409100 chr2B 210702015 210703333 1318 True 732.000 732 77.4550 1076 2367 1 chr2B.!!$R2 1291
12 TraesCS1D01G409100 chr2A 148653842 148655160 1318 False 730.000 730 77.3980 1073 2367 1 chr2A.!!$F1 1294
13 TraesCS1D01G409100 chr5A 692371677 692372984 1307 False 717.000 717 77.2590 1086 2366 1 chr5A.!!$F1 1280
14 TraesCS1D01G409100 chr7A 730418259 730418782 523 False 612.000 612 87.7820 1933 2461 1 chr7A.!!$F1 528
15 TraesCS1D01G409100 chrUn 60738869 60739778 909 False 403.000 403 75.1880 1149 2061 1 chrUn.!!$F1 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 544 0.107654 ATGAGCCGGCCTAACTTGAC 60.108 55.0 26.15 4.12 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2414 2586 0.107654 GCTGGGAAGCTACGGACAAT 60.108 55.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 88 3.364565 GGAAAATTAAGAACGAGCGCACA 60.365 43.478 11.47 0.00 0.00 4.57
101 104 2.359354 CACGTCAAATGGGCCGGA 60.359 61.111 5.05 0.00 0.00 5.14
115 118 1.201414 GGCCGGACAACTTTGGTTATG 59.799 52.381 5.05 0.00 33.88 1.90
132 135 7.361457 TGGTTATGGTTGATGTTTTGGTAAA 57.639 32.000 0.00 0.00 0.00 2.01
227 230 8.937634 ATTTGATTTGAATGAGTTAAGGCATC 57.062 30.769 0.00 0.00 0.00 3.91
240 243 5.362430 AGTTAAGGCATCAAGTTGTTTTGGA 59.638 36.000 2.11 0.00 0.00 3.53
250 253 2.611751 AGTTGTTTTGGAAAAATGCCGC 59.388 40.909 0.00 0.00 0.00 6.53
268 271 3.438360 CCGCTTTGATTGAGTTAATGCC 58.562 45.455 0.00 0.00 0.00 4.40
270 273 3.438360 GCTTTGATTGAGTTAATGCCCG 58.562 45.455 0.00 0.00 0.00 6.13
272 275 1.388547 TGATTGAGTTAATGCCCGCC 58.611 50.000 0.00 0.00 0.00 6.13
288 291 4.447342 CCTCAAATGGGCCGGCCT 62.447 66.667 42.70 24.30 36.10 5.19
354 357 3.388676 TGGACGTAATATAGGGTTGGTGG 59.611 47.826 0.00 0.00 0.00 4.61
376 379 3.512033 AGGTGAAGCGAGACTATCAAC 57.488 47.619 0.00 0.00 0.00 3.18
495 510 7.104043 AGACCTATTGTACACGCACTTAATA 57.896 36.000 0.00 0.00 0.00 0.98
496 511 7.723324 AGACCTATTGTACACGCACTTAATAT 58.277 34.615 0.00 0.00 0.00 1.28
497 512 7.866393 AGACCTATTGTACACGCACTTAATATC 59.134 37.037 0.00 0.00 0.00 1.63
498 513 7.494211 ACCTATTGTACACGCACTTAATATCA 58.506 34.615 0.00 0.00 0.00 2.15
499 514 7.652105 ACCTATTGTACACGCACTTAATATCAG 59.348 37.037 0.00 0.00 0.00 2.90
500 515 7.652105 CCTATTGTACACGCACTTAATATCAGT 59.348 37.037 0.00 0.00 0.00 3.41
501 516 6.880822 TTGTACACGCACTTAATATCAGTC 57.119 37.500 0.00 0.00 0.00 3.51
502 517 5.956642 TGTACACGCACTTAATATCAGTCA 58.043 37.500 0.00 0.00 0.00 3.41
503 518 6.569780 TGTACACGCACTTAATATCAGTCAT 58.430 36.000 0.00 0.00 0.00 3.06
504 519 5.973651 ACACGCACTTAATATCAGTCATG 57.026 39.130 0.00 0.00 0.00 3.07
505 520 5.419542 ACACGCACTTAATATCAGTCATGT 58.580 37.500 0.00 0.00 0.00 3.21
506 521 5.291858 ACACGCACTTAATATCAGTCATGTG 59.708 40.000 0.00 0.00 0.00 3.21
507 522 5.291858 CACGCACTTAATATCAGTCATGTGT 59.708 40.000 0.00 0.00 0.00 3.72
508 523 5.874810 ACGCACTTAATATCAGTCATGTGTT 59.125 36.000 0.00 0.00 0.00 3.32
509 524 7.010091 CACGCACTTAATATCAGTCATGTGTTA 59.990 37.037 0.00 0.00 0.00 2.41
510 525 7.547722 ACGCACTTAATATCAGTCATGTGTTAA 59.452 33.333 0.00 0.00 0.00 2.01
511 526 8.551205 CGCACTTAATATCAGTCATGTGTTAAT 58.449 33.333 0.00 0.00 0.00 1.40
512 527 9.655769 GCACTTAATATCAGTCATGTGTTAATG 57.344 33.333 0.00 0.00 0.00 1.90
516 531 7.502120 AATATCAGTCATGTGTTAATGAGCC 57.498 36.000 0.00 0.00 37.24 4.70
517 532 3.261580 TCAGTCATGTGTTAATGAGCCG 58.738 45.455 0.00 0.00 37.24 5.52
518 533 2.352651 CAGTCATGTGTTAATGAGCCGG 59.647 50.000 0.00 0.00 37.24 6.13
519 534 1.064060 GTCATGTGTTAATGAGCCGGC 59.936 52.381 21.89 21.89 37.24 6.13
520 535 0.381801 CATGTGTTAATGAGCCGGCC 59.618 55.000 26.15 15.80 0.00 6.13
521 536 0.255890 ATGTGTTAATGAGCCGGCCT 59.744 50.000 26.15 10.99 0.00 5.19
522 537 0.906066 TGTGTTAATGAGCCGGCCTA 59.094 50.000 26.15 13.59 0.00 3.93
523 538 1.279558 TGTGTTAATGAGCCGGCCTAA 59.720 47.619 26.15 13.12 0.00 2.69
524 539 1.669265 GTGTTAATGAGCCGGCCTAAC 59.331 52.381 26.15 23.49 0.00 2.34
525 540 1.557832 TGTTAATGAGCCGGCCTAACT 59.442 47.619 26.15 2.91 0.00 2.24
526 541 2.026636 TGTTAATGAGCCGGCCTAACTT 60.027 45.455 26.15 12.48 0.00 2.66
527 542 2.325583 TAATGAGCCGGCCTAACTTG 57.674 50.000 26.15 0.00 0.00 3.16
528 543 0.618458 AATGAGCCGGCCTAACTTGA 59.382 50.000 26.15 0.00 0.00 3.02
529 544 0.107654 ATGAGCCGGCCTAACTTGAC 60.108 55.000 26.15 4.12 0.00 3.18
530 545 1.192146 TGAGCCGGCCTAACTTGACT 61.192 55.000 26.15 0.00 0.00 3.41
531 546 0.741221 GAGCCGGCCTAACTTGACTG 60.741 60.000 26.15 0.00 0.00 3.51
532 547 2.399356 GCCGGCCTAACTTGACTGC 61.399 63.158 18.11 0.00 0.00 4.40
533 548 1.003839 CCGGCCTAACTTGACTGCA 60.004 57.895 0.00 0.00 0.00 4.41
534 549 1.298859 CCGGCCTAACTTGACTGCAC 61.299 60.000 0.00 0.00 0.00 4.57
535 550 0.320771 CGGCCTAACTTGACTGCACT 60.321 55.000 0.00 0.00 0.00 4.40
536 551 1.878102 CGGCCTAACTTGACTGCACTT 60.878 52.381 0.00 0.00 0.00 3.16
537 552 2.230660 GGCCTAACTTGACTGCACTTT 58.769 47.619 0.00 0.00 0.00 2.66
538 553 3.408634 GGCCTAACTTGACTGCACTTTA 58.591 45.455 0.00 0.00 0.00 1.85
539 554 3.188667 GGCCTAACTTGACTGCACTTTAC 59.811 47.826 0.00 0.00 0.00 2.01
540 555 4.065789 GCCTAACTTGACTGCACTTTACT 58.934 43.478 0.00 0.00 0.00 2.24
541 556 4.083802 GCCTAACTTGACTGCACTTTACTG 60.084 45.833 0.00 0.00 0.00 2.74
542 557 4.452455 CCTAACTTGACTGCACTTTACTGG 59.548 45.833 0.00 0.00 0.00 4.00
543 558 3.838244 ACTTGACTGCACTTTACTGGA 57.162 42.857 0.00 0.00 0.00 3.86
544 559 4.150897 ACTTGACTGCACTTTACTGGAA 57.849 40.909 0.00 0.00 0.00 3.53
545 560 4.130118 ACTTGACTGCACTTTACTGGAAG 58.870 43.478 0.00 0.00 42.29 3.46
546 561 4.141711 ACTTGACTGCACTTTACTGGAAGA 60.142 41.667 0.00 0.00 37.43 2.87
547 562 4.623932 TGACTGCACTTTACTGGAAGAT 57.376 40.909 0.00 0.00 37.43 2.40
548 563 4.973168 TGACTGCACTTTACTGGAAGATT 58.027 39.130 0.00 0.00 37.43 2.40
549 564 4.756642 TGACTGCACTTTACTGGAAGATTG 59.243 41.667 0.00 0.00 37.43 2.67
550 565 4.718961 ACTGCACTTTACTGGAAGATTGT 58.281 39.130 0.00 0.00 37.43 2.71
551 566 5.133221 ACTGCACTTTACTGGAAGATTGTT 58.867 37.500 0.00 0.00 37.43 2.83
552 567 5.594317 ACTGCACTTTACTGGAAGATTGTTT 59.406 36.000 0.00 0.00 37.43 2.83
553 568 5.830912 TGCACTTTACTGGAAGATTGTTTG 58.169 37.500 0.00 0.00 37.43 2.93
554 569 5.359576 TGCACTTTACTGGAAGATTGTTTGT 59.640 36.000 0.00 0.00 37.43 2.83
555 570 6.544197 TGCACTTTACTGGAAGATTGTTTGTA 59.456 34.615 0.00 0.00 37.43 2.41
556 571 7.230510 TGCACTTTACTGGAAGATTGTTTGTAT 59.769 33.333 0.00 0.00 37.43 2.29
557 572 7.538678 GCACTTTACTGGAAGATTGTTTGTATG 59.461 37.037 0.91 0.00 37.43 2.39
558 573 8.783093 CACTTTACTGGAAGATTGTTTGTATGA 58.217 33.333 0.91 0.00 37.43 2.15
559 574 8.784043 ACTTTACTGGAAGATTGTTTGTATGAC 58.216 33.333 0.91 0.00 37.43 3.06
560 575 5.862924 ACTGGAAGATTGTTTGTATGACG 57.137 39.130 0.00 0.00 37.43 4.35
561 576 4.154195 ACTGGAAGATTGTTTGTATGACGC 59.846 41.667 0.00 0.00 37.43 5.19
562 577 4.323417 TGGAAGATTGTTTGTATGACGCT 58.677 39.130 0.00 0.00 0.00 5.07
563 578 4.391830 TGGAAGATTGTTTGTATGACGCTC 59.608 41.667 0.00 0.00 0.00 5.03
564 579 4.492570 GGAAGATTGTTTGTATGACGCTCG 60.493 45.833 0.00 0.00 0.00 5.03
565 580 3.585862 AGATTGTTTGTATGACGCTCGT 58.414 40.909 0.00 0.00 0.00 4.18
566 581 3.994392 AGATTGTTTGTATGACGCTCGTT 59.006 39.130 0.00 0.00 0.00 3.85
567 582 3.513462 TTGTTTGTATGACGCTCGTTG 57.487 42.857 0.00 0.00 0.00 4.10
568 583 1.795872 TGTTTGTATGACGCTCGTTGG 59.204 47.619 0.00 0.00 0.00 3.77
569 584 0.793861 TTTGTATGACGCTCGTTGGC 59.206 50.000 0.00 0.00 0.00 4.52
580 595 2.334838 GCTCGTTGGCGTAATATAGGG 58.665 52.381 0.00 0.00 39.49 3.53
581 596 2.288640 GCTCGTTGGCGTAATATAGGGT 60.289 50.000 0.00 0.00 39.49 4.34
582 597 3.801293 GCTCGTTGGCGTAATATAGGGTT 60.801 47.826 0.00 0.00 39.49 4.11
583 598 3.719924 TCGTTGGCGTAATATAGGGTTG 58.280 45.455 0.00 0.00 39.49 3.77
584 599 2.803956 CGTTGGCGTAATATAGGGTTGG 59.196 50.000 0.00 0.00 0.00 3.77
585 600 3.742013 CGTTGGCGTAATATAGGGTTGGT 60.742 47.826 0.00 0.00 0.00 3.67
586 601 3.478857 TGGCGTAATATAGGGTTGGTG 57.521 47.619 0.00 0.00 0.00 4.17
587 602 2.105134 TGGCGTAATATAGGGTTGGTGG 59.895 50.000 0.00 0.00 0.00 4.61
588 603 2.551504 GGCGTAATATAGGGTTGGTGGG 60.552 54.545 0.00 0.00 0.00 4.61
589 604 2.369532 GCGTAATATAGGGTTGGTGGGA 59.630 50.000 0.00 0.00 0.00 4.37
590 605 3.556423 GCGTAATATAGGGTTGGTGGGAG 60.556 52.174 0.00 0.00 0.00 4.30
591 606 3.899360 CGTAATATAGGGTTGGTGGGAGA 59.101 47.826 0.00 0.00 0.00 3.71
592 607 4.530946 CGTAATATAGGGTTGGTGGGAGAT 59.469 45.833 0.00 0.00 0.00 2.75
593 608 5.568825 CGTAATATAGGGTTGGTGGGAGATG 60.569 48.000 0.00 0.00 0.00 2.90
594 609 2.587060 ATAGGGTTGGTGGGAGATGA 57.413 50.000 0.00 0.00 0.00 2.92
595 610 2.352561 TAGGGTTGGTGGGAGATGAA 57.647 50.000 0.00 0.00 0.00 2.57
596 611 0.995024 AGGGTTGGTGGGAGATGAAG 59.005 55.000 0.00 0.00 0.00 3.02
597 612 0.698818 GGGTTGGTGGGAGATGAAGT 59.301 55.000 0.00 0.00 0.00 3.01
598 613 1.614317 GGGTTGGTGGGAGATGAAGTG 60.614 57.143 0.00 0.00 0.00 3.16
599 614 1.351017 GGTTGGTGGGAGATGAAGTGA 59.649 52.381 0.00 0.00 0.00 3.41
600 615 2.616510 GGTTGGTGGGAGATGAAGTGAG 60.617 54.545 0.00 0.00 0.00 3.51
601 616 2.303022 GTTGGTGGGAGATGAAGTGAGA 59.697 50.000 0.00 0.00 0.00 3.27
602 617 1.902508 TGGTGGGAGATGAAGTGAGAC 59.097 52.381 0.00 0.00 0.00 3.36
603 618 2.183679 GGTGGGAGATGAAGTGAGACT 58.816 52.381 0.00 0.00 0.00 3.24
604 619 3.245622 TGGTGGGAGATGAAGTGAGACTA 60.246 47.826 0.00 0.00 0.00 2.59
605 620 3.964031 GGTGGGAGATGAAGTGAGACTAT 59.036 47.826 0.00 0.00 0.00 2.12
606 621 4.038642 GGTGGGAGATGAAGTGAGACTATC 59.961 50.000 0.00 0.00 0.00 2.08
607 622 4.646945 GTGGGAGATGAAGTGAGACTATCA 59.353 45.833 0.00 0.00 34.79 2.15
608 623 5.127845 GTGGGAGATGAAGTGAGACTATCAA 59.872 44.000 0.00 0.00 40.43 2.57
609 624 5.127845 TGGGAGATGAAGTGAGACTATCAAC 59.872 44.000 0.00 0.00 40.43 3.18
610 625 5.362430 GGGAGATGAAGTGAGACTATCAACT 59.638 44.000 0.00 0.00 40.43 3.16
611 626 6.460953 GGGAGATGAAGTGAGACTATCAACTC 60.461 46.154 0.00 0.00 40.43 3.01
612 627 6.321181 GGAGATGAAGTGAGACTATCAACTCT 59.679 42.308 16.34 7.89 40.43 3.24
613 628 7.333528 AGATGAAGTGAGACTATCAACTCTC 57.666 40.000 0.00 0.00 40.43 3.20
614 629 7.118723 AGATGAAGTGAGACTATCAACTCTCT 58.881 38.462 0.00 0.00 40.43 3.10
615 630 7.615365 AGATGAAGTGAGACTATCAACTCTCTT 59.385 37.037 0.00 0.00 44.19 2.85
616 631 7.531857 TGAAGTGAGACTATCAACTCTCTTT 57.468 36.000 0.00 0.00 42.74 2.52
617 632 8.637196 TGAAGTGAGACTATCAACTCTCTTTA 57.363 34.615 0.00 0.00 42.74 1.85
618 633 8.735315 TGAAGTGAGACTATCAACTCTCTTTAG 58.265 37.037 0.00 0.00 42.74 1.85
619 634 7.639113 AGTGAGACTATCAACTCTCTTTAGG 57.361 40.000 0.00 0.00 40.43 2.69
620 635 7.406916 AGTGAGACTATCAACTCTCTTTAGGA 58.593 38.462 0.00 0.00 40.43 2.94
621 636 7.891183 AGTGAGACTATCAACTCTCTTTAGGAA 59.109 37.037 0.00 0.00 40.43 3.36
622 637 8.691797 GTGAGACTATCAACTCTCTTTAGGAAT 58.308 37.037 0.00 0.00 40.43 3.01
623 638 9.922477 TGAGACTATCAACTCTCTTTAGGAATA 57.078 33.333 0.00 0.00 34.02 1.75
631 646 9.976776 TCAACTCTCTTTAGGAATAGAGACTAA 57.023 33.333 5.27 0.00 41.37 2.24
715 730 5.886960 AGTTTTGATGATGCTTCTACACC 57.113 39.130 0.88 0.00 0.00 4.16
716 731 5.564550 AGTTTTGATGATGCTTCTACACCT 58.435 37.500 0.88 0.00 0.00 4.00
717 732 6.711277 AGTTTTGATGATGCTTCTACACCTA 58.289 36.000 0.88 0.00 0.00 3.08
718 733 7.341805 AGTTTTGATGATGCTTCTACACCTAT 58.658 34.615 0.88 0.00 0.00 2.57
719 734 7.831193 AGTTTTGATGATGCTTCTACACCTATT 59.169 33.333 0.88 0.00 0.00 1.73
720 735 7.558161 TTTGATGATGCTTCTACACCTATTG 57.442 36.000 0.88 0.00 0.00 1.90
721 736 6.239217 TGATGATGCTTCTACACCTATTGT 57.761 37.500 0.88 0.00 42.84 2.71
730 745 2.543578 CACCTATTGTGCACGCACT 58.456 52.632 21.76 6.45 46.30 4.40
731 746 0.874390 CACCTATTGTGCACGCACTT 59.126 50.000 21.76 12.35 46.30 3.16
732 747 0.874390 ACCTATTGTGCACGCACTTG 59.126 50.000 21.76 9.67 46.30 3.16
733 748 1.155889 CCTATTGTGCACGCACTTGA 58.844 50.000 21.76 9.32 46.30 3.02
734 749 1.739466 CCTATTGTGCACGCACTTGAT 59.261 47.619 21.76 14.90 46.30 2.57
831 851 1.965754 GCTAGACCTGGTCCCTGCAG 61.966 65.000 22.81 6.78 32.18 4.41
849 869 5.212532 TGCAGTCACCAATAAAAATTGCT 57.787 34.783 0.00 0.00 0.00 3.91
852 872 5.782047 CAGTCACCAATAAAAATTGCTGGA 58.218 37.500 0.00 0.00 0.00 3.86
912 939 5.406780 CCACTGGATCGAAGATTATTAGTGC 59.593 44.000 0.00 0.00 45.12 4.40
917 944 3.639538 TCGAAGATTATTAGTGCTCGGC 58.360 45.455 0.00 0.00 0.00 5.54
953 985 0.723414 CAATGCAAGCTGATCGTCGT 59.277 50.000 0.00 0.00 0.00 4.34
995 1027 1.618837 ACATCACACCACTAGCGAACT 59.381 47.619 0.00 0.00 0.00 3.01
1057 1092 1.594293 ACGGTGAAGGCGTCTGTTG 60.594 57.895 0.00 0.00 0.00 3.33
1136 1177 1.065854 CATCCCCAACTCGCTCTTCTT 60.066 52.381 0.00 0.00 0.00 2.52
1191 1232 2.665185 GACGTGGTCGCAGCCTTT 60.665 61.111 0.00 0.00 41.18 3.11
1230 1271 1.985116 GCTCGACCACTTCCTCCCT 60.985 63.158 0.00 0.00 0.00 4.20
1344 1385 2.101380 GTGGCTCTCGCGAGTCTC 59.899 66.667 33.33 22.74 42.42 3.36
1648 1731 1.906824 ACGGCGTTGAAGGAGGAGA 60.907 57.895 6.77 0.00 0.00 3.71
1863 1967 2.618185 ATGGGCTGGTGGGTGGAT 60.618 61.111 0.00 0.00 0.00 3.41
1892 1996 3.303135 TCTCACCGCGCTGAGGTT 61.303 61.111 26.59 0.00 40.59 3.50
2395 2551 1.066303 GCCGTCTCTGAATCTGATCGT 59.934 52.381 11.26 0.00 0.00 3.73
2413 2585 4.219143 TCGTCCATGTATGTATGTCGTC 57.781 45.455 0.00 0.00 0.00 4.20
2414 2586 3.628487 TCGTCCATGTATGTATGTCGTCA 59.372 43.478 0.00 0.00 0.00 4.35
2420 2592 5.177511 CCATGTATGTATGTCGTCATTGTCC 59.822 44.000 0.00 0.00 35.70 4.02
2446 2618 5.175090 GCTTCCCAGCTTGATTTATGTAC 57.825 43.478 0.00 0.00 43.51 2.90
2460 2632 7.047891 TGATTTATGTACCTGGTCATGAAGAC 58.952 38.462 0.63 8.86 46.83 3.01
2482 2654 7.004086 AGACAAAGATGTTTTACCCTGATTGA 58.996 34.615 0.00 0.00 40.74 2.57
2485 2657 7.451255 ACAAAGATGTTTTACCCTGATTGATGA 59.549 33.333 0.00 0.00 35.91 2.92
2486 2658 7.396540 AAGATGTTTTACCCTGATTGATGAC 57.603 36.000 0.00 0.00 0.00 3.06
2488 2660 4.991776 TGTTTTACCCTGATTGATGACCA 58.008 39.130 0.00 0.00 0.00 4.02
2489 2661 5.579047 TGTTTTACCCTGATTGATGACCAT 58.421 37.500 0.00 0.00 0.00 3.55
2490 2662 6.015918 TGTTTTACCCTGATTGATGACCATT 58.984 36.000 0.00 0.00 0.00 3.16
2502 2674 3.202818 TGATGACCATTTGTATCTGGCCT 59.797 43.478 3.32 0.00 35.88 5.19
2550 2743 3.067601 GGCCGGTCCGATTGAATAAAAAT 59.932 43.478 14.39 0.00 0.00 1.82
2552 2745 5.449304 GCCGGTCCGATTGAATAAAAATAG 58.551 41.667 14.39 0.00 0.00 1.73
2554 2747 6.203338 GCCGGTCCGATTGAATAAAAATAGTA 59.797 38.462 14.39 0.00 0.00 1.82
2557 2750 8.823818 CGGTCCGATTGAATAAAAATAGTACTT 58.176 33.333 4.91 0.00 0.00 2.24
2606 3478 6.190954 ACTTTTGTGTGAAGTCAAAGTACC 57.809 37.500 0.00 0.00 35.47 3.34
2608 3480 6.093633 ACTTTTGTGTGAAGTCAAAGTACCTC 59.906 38.462 0.00 0.00 35.47 3.85
2610 3482 6.474140 TTGTGTGAAGTCAAAGTACCTCTA 57.526 37.500 0.00 0.00 0.00 2.43
2611 3483 6.665992 TGTGTGAAGTCAAAGTACCTCTAT 57.334 37.500 0.00 0.00 0.00 1.98
2613 3485 7.506114 TGTGTGAAGTCAAAGTACCTCTATTT 58.494 34.615 0.00 0.00 0.00 1.40
2614 3486 7.990886 TGTGTGAAGTCAAAGTACCTCTATTTT 59.009 33.333 0.00 0.00 0.00 1.82
2615 3487 8.283291 GTGTGAAGTCAAAGTACCTCTATTTTG 58.717 37.037 0.00 0.00 33.10 2.44
2616 3488 8.208224 TGTGAAGTCAAAGTACCTCTATTTTGA 58.792 33.333 2.55 2.55 36.66 2.69
2622 3494 8.793592 GTCAAAGTACCTCTATTTTGACCAAAT 58.206 33.333 18.43 0.00 45.29 2.32
2726 4911 8.962884 TGTATAGTTGGTATAGTAGACGTTGA 57.037 34.615 0.00 0.00 0.00 3.18
2727 4912 9.565090 TGTATAGTTGGTATAGTAGACGTTGAT 57.435 33.333 0.00 0.00 0.00 2.57
2772 4957 5.873179 AAAGTTTGTGAAGTTTGACTCGA 57.127 34.783 0.00 0.00 37.10 4.04
2773 4958 4.859629 AGTTTGTGAAGTTTGACTCGAC 57.140 40.909 0.00 0.00 0.00 4.20
2774 4959 4.250464 AGTTTGTGAAGTTTGACTCGACA 58.750 39.130 0.00 0.00 0.00 4.35
2775 4960 4.693566 AGTTTGTGAAGTTTGACTCGACAA 59.306 37.500 0.00 0.00 0.00 3.18
2776 4961 5.180492 AGTTTGTGAAGTTTGACTCGACAAA 59.820 36.000 10.89 10.89 37.41 2.83
2777 4962 5.614923 TTGTGAAGTTTGACTCGACAAAA 57.385 34.783 3.05 0.00 40.62 2.44
2778 4963 5.614923 TGTGAAGTTTGACTCGACAAAAA 57.385 34.783 3.05 0.00 40.62 1.94
2779 4964 6.189677 TGTGAAGTTTGACTCGACAAAAAT 57.810 33.333 3.05 0.00 40.62 1.82
2780 4965 6.616947 TGTGAAGTTTGACTCGACAAAAATT 58.383 32.000 3.05 2.43 40.62 1.82
2781 4966 7.087639 TGTGAAGTTTGACTCGACAAAAATTT 58.912 30.769 3.05 0.00 40.62 1.82
2782 4967 7.596995 TGTGAAGTTTGACTCGACAAAAATTTT 59.403 29.630 0.00 0.00 40.62 1.82
2783 4968 9.068008 GTGAAGTTTGACTCGACAAAAATTTTA 57.932 29.630 3.34 0.00 40.62 1.52
2784 4969 9.796120 TGAAGTTTGACTCGACAAAAATTTTAT 57.204 25.926 3.34 0.00 40.62 1.40
2788 4973 9.937577 GTTTGACTCGACAAAAATTTTATATGC 57.062 29.630 3.34 0.00 40.62 3.14
2789 4974 7.946918 TGACTCGACAAAAATTTTATATGCG 57.053 32.000 3.34 7.49 0.00 4.73
2790 4975 7.744059 TGACTCGACAAAAATTTTATATGCGA 58.256 30.769 3.34 10.77 0.00 5.10
2791 4976 8.231161 TGACTCGACAAAAATTTTATATGCGAA 58.769 29.630 3.34 0.00 0.00 4.70
2792 4977 8.601243 ACTCGACAAAAATTTTATATGCGAAG 57.399 30.769 3.34 8.73 0.00 3.79
2793 4978 8.234546 ACTCGACAAAAATTTTATATGCGAAGT 58.765 29.630 3.34 9.18 0.00 3.01
2794 4979 9.697250 CTCGACAAAAATTTTATATGCGAAGTA 57.303 29.630 3.34 0.00 0.00 2.24
2808 4993 5.356882 TGCGAAGTAAAATGAAACAGAGG 57.643 39.130 0.00 0.00 0.00 3.69
2809 4994 4.215399 TGCGAAGTAAAATGAAACAGAGGG 59.785 41.667 0.00 0.00 0.00 4.30
2820 5005 2.400467 AACAGAGGGAGTACCACACT 57.600 50.000 0.00 0.00 43.89 3.55
2824 5009 0.533032 GAGGGAGTACCACACTGCTC 59.467 60.000 0.00 0.00 44.61 4.26
2844 5029 5.808540 TGCTCGTTTCTAAATATGTTACGCT 59.191 36.000 0.00 0.00 0.00 5.07
2870 5055 2.693864 AGGCTGCTGGTGGGCTAT 60.694 61.111 0.00 0.00 36.58 2.97
2872 5057 3.214845 GCTGCTGGTGGGCTATGC 61.215 66.667 0.00 0.00 0.00 3.14
2895 5080 1.138883 CCGACGATGTGGTCACGAT 59.861 57.895 0.00 0.00 36.73 3.73
2899 5084 2.230940 CGATGTGGTCACGATCCGC 61.231 63.158 0.00 0.00 36.18 5.54
2901 5086 0.872021 GATGTGGTCACGATCCGCTC 60.872 60.000 0.00 0.00 36.54 5.03
2909 5185 1.450848 ACGATCCGCTCCGTGTAGA 60.451 57.895 0.00 0.00 37.64 2.59
2911 5187 1.712018 CGATCCGCTCCGTGTAGACA 61.712 60.000 0.00 0.00 0.00 3.41
2916 5192 2.810274 TCCGCTCCGTGTAGACATATAC 59.190 50.000 0.00 0.00 0.00 1.47
2929 5205 5.334724 AGACATATACGGTCGGTCTTTTT 57.665 39.130 0.00 0.00 40.20 1.94
3074 5354 2.637872 TCGGGAAAATGAGTCCTCTGTT 59.362 45.455 0.00 0.00 35.33 3.16
3107 5387 3.204827 CGCTTCTCCCCATTGCGG 61.205 66.667 0.00 0.00 42.46 5.69
3127 5407 3.923864 TTCCGGCAGTGCGACACT 61.924 61.111 9.45 6.67 46.51 3.55
3139 5420 3.447586 AGTGCGACACTACAAGTATGGAT 59.552 43.478 10.20 0.00 43.46 3.41
3187 5468 0.389817 TCTGTTCTCCACCGCGATTG 60.390 55.000 8.23 3.79 0.00 2.67
3189 5470 0.669318 TGTTCTCCACCGCGATTGTC 60.669 55.000 8.23 0.00 0.00 3.18
3193 5474 3.186047 CCACCGCGATTGTCCGAC 61.186 66.667 8.23 0.00 0.00 4.79
3195 5476 4.789075 ACCGCGATTGTCCGACGG 62.789 66.667 8.23 7.84 46.46 4.79
3204 5493 4.107622 CGATTGTCCGACGGTAAAAGTAT 58.892 43.478 14.79 0.00 0.00 2.12
3205 5494 4.027132 CGATTGTCCGACGGTAAAAGTATG 60.027 45.833 14.79 0.00 0.00 2.39
3213 5502 4.260212 CGACGGTAAAAGTATGGAGCAATG 60.260 45.833 0.00 0.00 0.00 2.82
3239 5528 1.604604 TTTTCCCTTGCTTCCTCGTG 58.395 50.000 0.00 0.00 0.00 4.35
3249 5538 1.135489 GCTTCCTCGTGTGTATGTCGA 60.135 52.381 0.00 0.00 0.00 4.20
3261 5550 3.863424 GTGTATGTCGACTATGTGTTGGG 59.137 47.826 17.92 0.00 0.00 4.12
3263 5552 0.036765 TGTCGACTATGTGTTGGGGC 60.037 55.000 17.92 0.00 0.00 5.80
3266 5555 1.451387 GACTATGTGTTGGGGCCCG 60.451 63.158 19.83 2.78 0.00 6.13
3329 5630 1.002502 CCTTCCTTTGACCCGGACC 60.003 63.158 0.73 0.00 0.00 4.46
3350 5651 0.109781 CGCCACATTGGTTTTCTCCG 60.110 55.000 0.00 0.00 40.46 4.63
3351 5652 0.958822 GCCACATTGGTTTTCTCCGT 59.041 50.000 0.00 0.00 40.46 4.69
3352 5653 1.068541 GCCACATTGGTTTTCTCCGTC 60.069 52.381 0.00 0.00 40.46 4.79
3353 5654 1.539827 CCACATTGGTTTTCTCCGTCC 59.460 52.381 0.00 0.00 31.35 4.79
3354 5655 1.196808 CACATTGGTTTTCTCCGTCCG 59.803 52.381 0.00 0.00 0.00 4.79
3355 5656 0.168128 CATTGGTTTTCTCCGTCCGC 59.832 55.000 0.00 0.00 0.00 5.54
3356 5657 0.958876 ATTGGTTTTCTCCGTCCGCC 60.959 55.000 0.00 0.00 0.00 6.13
3357 5658 2.047213 TTGGTTTTCTCCGTCCGCCT 62.047 55.000 0.00 0.00 0.00 5.52
3358 5659 1.740664 GGTTTTCTCCGTCCGCCTC 60.741 63.158 0.00 0.00 0.00 4.70
3359 5660 2.092882 GTTTTCTCCGTCCGCCTCG 61.093 63.158 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 66 3.161306 GTGCGCTCGTTCTTAATTTTCC 58.839 45.455 9.73 0.00 0.00 3.13
85 88 2.359478 GTCCGGCCCATTTGACGT 60.359 61.111 0.00 0.00 0.00 4.34
101 104 6.478512 AACATCAACCATAACCAAAGTTGT 57.521 33.333 0.00 0.00 40.34 3.32
209 212 6.265196 ACAACTTGATGCCTTAACTCATTCAA 59.735 34.615 0.00 0.00 0.00 2.69
222 225 5.809719 TTTTTCCAAAACAACTTGATGCC 57.190 34.783 0.00 0.00 0.00 4.40
227 230 4.586334 CGGCATTTTTCCAAAACAACTTG 58.414 39.130 0.00 0.00 0.00 3.16
240 243 3.993920 ACTCAATCAAAGCGGCATTTTT 58.006 36.364 1.45 0.00 0.00 1.94
250 253 3.438360 GCGGGCATTAACTCAATCAAAG 58.562 45.455 0.00 0.00 0.00 2.77
272 275 1.077068 TTAGGCCGGCCCATTTGAG 60.077 57.895 41.72 0.00 36.58 3.02
288 291 2.300723 TCGGTAAAGAGCAGCCAAGTTA 59.699 45.455 0.00 0.00 0.00 2.24
320 323 4.521130 ATTACGTCCATGAGCGTCATAT 57.479 40.909 15.64 7.64 41.77 1.78
335 338 4.102054 CCTTCCACCAACCCTATATTACGT 59.898 45.833 0.00 0.00 0.00 3.57
354 357 3.784701 TGATAGTCTCGCTTCACCTTC 57.215 47.619 0.00 0.00 0.00 3.46
376 379 5.974108 TGGTAATTTTCTTAGTCGGGAGAG 58.026 41.667 0.00 0.00 41.26 3.20
451 466 5.819379 GGTCTAGAAGCATCATCAACATCAA 59.181 40.000 0.00 0.00 0.00 2.57
452 467 5.129980 AGGTCTAGAAGCATCATCAACATCA 59.870 40.000 0.00 0.00 0.00 3.07
453 468 5.609423 AGGTCTAGAAGCATCATCAACATC 58.391 41.667 0.00 0.00 0.00 3.06
454 469 5.627182 AGGTCTAGAAGCATCATCAACAT 57.373 39.130 0.00 0.00 0.00 2.71
455 470 6.737720 ATAGGTCTAGAAGCATCATCAACA 57.262 37.500 0.00 0.00 0.00 3.33
456 471 6.989169 ACAATAGGTCTAGAAGCATCATCAAC 59.011 38.462 0.00 0.00 0.00 3.18
495 510 3.873361 CGGCTCATTAACACATGACTGAT 59.127 43.478 0.00 0.00 0.00 2.90
496 511 3.261580 CGGCTCATTAACACATGACTGA 58.738 45.455 0.00 0.00 0.00 3.41
497 512 2.352651 CCGGCTCATTAACACATGACTG 59.647 50.000 0.00 0.00 0.00 3.51
498 513 2.632377 CCGGCTCATTAACACATGACT 58.368 47.619 0.00 0.00 0.00 3.41
499 514 1.064060 GCCGGCTCATTAACACATGAC 59.936 52.381 22.15 0.00 0.00 3.06
500 515 1.378531 GCCGGCTCATTAACACATGA 58.621 50.000 22.15 0.00 0.00 3.07
501 516 0.381801 GGCCGGCTCATTAACACATG 59.618 55.000 28.56 0.00 0.00 3.21
502 517 0.255890 AGGCCGGCTCATTAACACAT 59.744 50.000 28.56 0.00 0.00 3.21
503 518 0.906066 TAGGCCGGCTCATTAACACA 59.094 50.000 28.56 0.00 0.00 3.72
504 519 1.669265 GTTAGGCCGGCTCATTAACAC 59.331 52.381 28.56 5.83 0.00 3.32
505 520 1.557832 AGTTAGGCCGGCTCATTAACA 59.442 47.619 28.56 0.00 0.00 2.41
506 521 2.327200 AGTTAGGCCGGCTCATTAAC 57.673 50.000 28.56 25.25 0.00 2.01
507 522 2.237643 TCAAGTTAGGCCGGCTCATTAA 59.762 45.455 28.56 16.41 0.00 1.40
508 523 1.834896 TCAAGTTAGGCCGGCTCATTA 59.165 47.619 28.56 11.21 0.00 1.90
509 524 0.618458 TCAAGTTAGGCCGGCTCATT 59.382 50.000 28.56 12.27 0.00 2.57
510 525 0.107654 GTCAAGTTAGGCCGGCTCAT 60.108 55.000 28.56 15.39 0.00 2.90
511 526 1.192146 AGTCAAGTTAGGCCGGCTCA 61.192 55.000 28.56 11.83 0.00 4.26
512 527 0.741221 CAGTCAAGTTAGGCCGGCTC 60.741 60.000 28.56 16.85 0.00 4.70
513 528 1.296715 CAGTCAAGTTAGGCCGGCT 59.703 57.895 28.56 15.07 0.00 5.52
514 529 2.399356 GCAGTCAAGTTAGGCCGGC 61.399 63.158 21.18 21.18 0.00 6.13
515 530 1.003839 TGCAGTCAAGTTAGGCCGG 60.004 57.895 0.00 0.00 0.00 6.13
516 531 0.320771 AGTGCAGTCAAGTTAGGCCG 60.321 55.000 0.00 0.00 0.00 6.13
517 532 1.897560 AAGTGCAGTCAAGTTAGGCC 58.102 50.000 0.00 0.00 0.00 5.19
518 533 4.065789 AGTAAAGTGCAGTCAAGTTAGGC 58.934 43.478 0.00 0.00 0.00 3.93
519 534 4.452455 CCAGTAAAGTGCAGTCAAGTTAGG 59.548 45.833 0.00 0.00 0.00 2.69
520 535 5.297547 TCCAGTAAAGTGCAGTCAAGTTAG 58.702 41.667 0.00 0.00 0.00 2.34
521 536 5.284861 TCCAGTAAAGTGCAGTCAAGTTA 57.715 39.130 0.00 0.00 0.00 2.24
522 537 4.150897 TCCAGTAAAGTGCAGTCAAGTT 57.849 40.909 0.00 0.00 0.00 2.66
523 538 3.838244 TCCAGTAAAGTGCAGTCAAGT 57.162 42.857 0.00 0.00 0.00 3.16
524 539 4.380531 TCTTCCAGTAAAGTGCAGTCAAG 58.619 43.478 0.00 0.00 0.00 3.02
525 540 4.415881 TCTTCCAGTAAAGTGCAGTCAA 57.584 40.909 0.00 0.00 0.00 3.18
526 541 4.623932 ATCTTCCAGTAAAGTGCAGTCA 57.376 40.909 0.00 0.00 0.00 3.41
527 542 4.757149 ACAATCTTCCAGTAAAGTGCAGTC 59.243 41.667 0.00 0.00 0.00 3.51
528 543 4.718961 ACAATCTTCCAGTAAAGTGCAGT 58.281 39.130 0.00 0.00 0.00 4.40
529 544 5.695851 AACAATCTTCCAGTAAAGTGCAG 57.304 39.130 0.00 0.00 0.00 4.41
530 545 5.359576 ACAAACAATCTTCCAGTAAAGTGCA 59.640 36.000 0.00 0.00 0.00 4.57
531 546 5.831997 ACAAACAATCTTCCAGTAAAGTGC 58.168 37.500 0.00 0.00 0.00 4.40
532 547 8.783093 TCATACAAACAATCTTCCAGTAAAGTG 58.217 33.333 0.00 0.00 0.00 3.16
533 548 8.784043 GTCATACAAACAATCTTCCAGTAAAGT 58.216 33.333 0.00 0.00 0.00 2.66
534 549 7.957484 CGTCATACAAACAATCTTCCAGTAAAG 59.043 37.037 0.00 0.00 0.00 1.85
535 550 7.572353 GCGTCATACAAACAATCTTCCAGTAAA 60.572 37.037 0.00 0.00 0.00 2.01
536 551 6.128391 GCGTCATACAAACAATCTTCCAGTAA 60.128 38.462 0.00 0.00 0.00 2.24
537 552 5.350365 GCGTCATACAAACAATCTTCCAGTA 59.650 40.000 0.00 0.00 0.00 2.74
538 553 4.154195 GCGTCATACAAACAATCTTCCAGT 59.846 41.667 0.00 0.00 0.00 4.00
539 554 4.393062 AGCGTCATACAAACAATCTTCCAG 59.607 41.667 0.00 0.00 0.00 3.86
540 555 4.323417 AGCGTCATACAAACAATCTTCCA 58.677 39.130 0.00 0.00 0.00 3.53
541 556 4.492570 CGAGCGTCATACAAACAATCTTCC 60.493 45.833 0.00 0.00 0.00 3.46
542 557 4.091509 ACGAGCGTCATACAAACAATCTTC 59.908 41.667 0.00 0.00 0.00 2.87
543 558 3.994392 ACGAGCGTCATACAAACAATCTT 59.006 39.130 0.00 0.00 0.00 2.40
544 559 3.585862 ACGAGCGTCATACAAACAATCT 58.414 40.909 0.00 0.00 0.00 2.40
545 560 3.991605 ACGAGCGTCATACAAACAATC 57.008 42.857 0.00 0.00 0.00 2.67
546 561 3.120338 CCAACGAGCGTCATACAAACAAT 60.120 43.478 0.00 0.00 0.00 2.71
547 562 2.222213 CCAACGAGCGTCATACAAACAA 59.778 45.455 0.00 0.00 0.00 2.83
548 563 1.795872 CCAACGAGCGTCATACAAACA 59.204 47.619 0.00 0.00 0.00 2.83
549 564 1.463528 GCCAACGAGCGTCATACAAAC 60.464 52.381 0.00 0.00 0.00 2.93
550 565 0.793861 GCCAACGAGCGTCATACAAA 59.206 50.000 0.00 0.00 0.00 2.83
551 566 2.451693 GCCAACGAGCGTCATACAA 58.548 52.632 0.00 0.00 0.00 2.41
552 567 4.178861 GCCAACGAGCGTCATACA 57.821 55.556 0.00 0.00 0.00 2.29
560 575 2.288640 ACCCTATATTACGCCAACGAGC 60.289 50.000 0.00 0.00 43.93 5.03
561 576 3.655276 ACCCTATATTACGCCAACGAG 57.345 47.619 0.00 0.00 43.93 4.18
562 577 3.493002 CCAACCCTATATTACGCCAACGA 60.493 47.826 0.00 0.00 43.93 3.85
564 579 3.562557 CACCAACCCTATATTACGCCAAC 59.437 47.826 0.00 0.00 0.00 3.77
565 580 3.433882 CCACCAACCCTATATTACGCCAA 60.434 47.826 0.00 0.00 0.00 4.52
566 581 2.105134 CCACCAACCCTATATTACGCCA 59.895 50.000 0.00 0.00 0.00 5.69
567 582 2.551504 CCCACCAACCCTATATTACGCC 60.552 54.545 0.00 0.00 0.00 5.68
568 583 2.369532 TCCCACCAACCCTATATTACGC 59.630 50.000 0.00 0.00 0.00 4.42
569 584 3.899360 TCTCCCACCAACCCTATATTACG 59.101 47.826 0.00 0.00 0.00 3.18
570 585 5.546499 TCATCTCCCACCAACCCTATATTAC 59.454 44.000 0.00 0.00 0.00 1.89
571 586 5.733000 TCATCTCCCACCAACCCTATATTA 58.267 41.667 0.00 0.00 0.00 0.98
572 587 4.577096 TCATCTCCCACCAACCCTATATT 58.423 43.478 0.00 0.00 0.00 1.28
573 588 4.228237 TCATCTCCCACCAACCCTATAT 57.772 45.455 0.00 0.00 0.00 0.86
574 589 3.717507 TCATCTCCCACCAACCCTATA 57.282 47.619 0.00 0.00 0.00 1.31
575 590 2.587060 TCATCTCCCACCAACCCTAT 57.413 50.000 0.00 0.00 0.00 2.57
576 591 2.196595 CTTCATCTCCCACCAACCCTA 58.803 52.381 0.00 0.00 0.00 3.53
577 592 0.995024 CTTCATCTCCCACCAACCCT 59.005 55.000 0.00 0.00 0.00 4.34
578 593 0.698818 ACTTCATCTCCCACCAACCC 59.301 55.000 0.00 0.00 0.00 4.11
579 594 1.351017 TCACTTCATCTCCCACCAACC 59.649 52.381 0.00 0.00 0.00 3.77
580 595 2.303022 TCTCACTTCATCTCCCACCAAC 59.697 50.000 0.00 0.00 0.00 3.77
581 596 2.303022 GTCTCACTTCATCTCCCACCAA 59.697 50.000 0.00 0.00 0.00 3.67
582 597 1.902508 GTCTCACTTCATCTCCCACCA 59.097 52.381 0.00 0.00 0.00 4.17
583 598 2.183679 AGTCTCACTTCATCTCCCACC 58.816 52.381 0.00 0.00 0.00 4.61
584 599 4.646945 TGATAGTCTCACTTCATCTCCCAC 59.353 45.833 0.00 0.00 0.00 4.61
585 600 4.871822 TGATAGTCTCACTTCATCTCCCA 58.128 43.478 0.00 0.00 0.00 4.37
586 601 5.362430 AGTTGATAGTCTCACTTCATCTCCC 59.638 44.000 0.00 0.00 32.17 4.30
587 602 6.321181 AGAGTTGATAGTCTCACTTCATCTCC 59.679 42.308 14.88 0.00 35.54 3.71
588 603 7.333528 AGAGTTGATAGTCTCACTTCATCTC 57.666 40.000 12.85 12.85 35.40 2.75
589 604 7.333528 GAGAGTTGATAGTCTCACTTCATCT 57.666 40.000 5.37 0.00 46.06 2.90
605 620 9.976776 TTAGTCTCTATTCCTAAAGAGAGTTGA 57.023 33.333 13.30 3.12 45.88 3.18
689 704 9.277783 GGTGTAGAAGCATCATCAAAACTATAT 57.722 33.333 0.00 0.00 0.00 0.86
690 705 8.486210 AGGTGTAGAAGCATCATCAAAACTATA 58.514 33.333 0.00 0.00 0.00 1.31
691 706 7.341805 AGGTGTAGAAGCATCATCAAAACTAT 58.658 34.615 0.00 0.00 0.00 2.12
692 707 6.711277 AGGTGTAGAAGCATCATCAAAACTA 58.289 36.000 0.00 0.00 0.00 2.24
693 708 5.564550 AGGTGTAGAAGCATCATCAAAACT 58.435 37.500 0.00 0.00 0.00 2.66
694 709 5.886960 AGGTGTAGAAGCATCATCAAAAC 57.113 39.130 0.00 0.00 0.00 2.43
695 710 7.611467 ACAATAGGTGTAGAAGCATCATCAAAA 59.389 33.333 0.00 0.00 39.29 2.44
696 711 7.066163 CACAATAGGTGTAGAAGCATCATCAAA 59.934 37.037 0.00 0.00 42.75 2.69
697 712 6.539826 CACAATAGGTGTAGAAGCATCATCAA 59.460 38.462 0.00 0.00 42.75 2.57
698 713 6.051074 CACAATAGGTGTAGAAGCATCATCA 58.949 40.000 0.00 0.00 42.75 3.07
699 714 6.536731 CACAATAGGTGTAGAAGCATCATC 57.463 41.667 0.00 0.00 42.75 2.92
720 735 0.164647 GACTGATCAAGTGCGTGCAC 59.835 55.000 16.91 16.91 46.50 4.57
721 736 0.249826 TGACTGATCAAGTGCGTGCA 60.250 50.000 0.00 0.00 40.07 4.57
722 737 1.081892 ATGACTGATCAAGTGCGTGC 58.918 50.000 0.00 0.00 40.07 5.34
723 738 2.071540 ACATGACTGATCAAGTGCGTG 58.928 47.619 0.00 1.10 40.07 5.34
724 739 2.071540 CACATGACTGATCAAGTGCGT 58.928 47.619 0.00 0.00 44.84 5.24
725 740 2.800694 CACATGACTGATCAAGTGCG 57.199 50.000 0.00 0.00 44.84 5.34
728 743 6.942005 TCCAATTAACACATGACTGATCAAGT 59.058 34.615 0.00 0.00 43.85 3.16
729 744 7.381766 TCCAATTAACACATGACTGATCAAG 57.618 36.000 0.00 0.00 38.69 3.02
730 745 7.830697 AGATCCAATTAACACATGACTGATCAA 59.169 33.333 0.00 0.00 38.69 2.57
731 746 7.341030 AGATCCAATTAACACATGACTGATCA 58.659 34.615 0.00 0.00 39.83 2.92
732 747 7.798596 AGATCCAATTAACACATGACTGATC 57.201 36.000 0.00 0.00 0.00 2.92
733 748 7.613022 ACAAGATCCAATTAACACATGACTGAT 59.387 33.333 0.00 0.00 0.00 2.90
734 749 6.942005 ACAAGATCCAATTAACACATGACTGA 59.058 34.615 0.00 0.00 0.00 3.41
822 837 2.489938 TTATTGGTGACTGCAGGGAC 57.510 50.000 19.93 13.47 0.00 4.46
849 869 9.753674 AGTTGACCTTATGATTAAGAAAATCCA 57.246 29.630 0.00 0.00 37.59 3.41
912 939 1.045350 TGAGAATCTCTGGGGCCGAG 61.045 60.000 9.61 9.61 34.92 4.63
917 944 3.276857 CATTGTGTGAGAATCTCTGGGG 58.723 50.000 11.92 0.00 34.92 4.96
953 985 6.772605 TGTAGGTACGACTATAGCTATGGAA 58.227 40.000 22.54 0.00 37.45 3.53
995 1027 2.670789 CGCGAATCCTTTGCCATTTTCA 60.671 45.455 0.00 0.00 36.70 2.69
1191 1232 3.075005 GACGGTAGGCTGGCCTCA 61.075 66.667 18.06 2.34 44.43 3.86
1209 1250 0.670854 GGAGGAAGTGGTCGAGCAAC 60.671 60.000 20.46 13.37 0.00 4.17
1210 1251 1.671742 GGAGGAAGTGGTCGAGCAA 59.328 57.895 20.46 0.27 0.00 3.91
1344 1385 1.656818 CGCCCAGGTTGCCATAGTTG 61.657 60.000 0.00 0.00 0.00 3.16
1648 1731 0.318784 GTGAGAGCGTTGACGAGGTT 60.319 55.000 7.85 0.00 43.02 3.50
2134 2265 1.222115 AAGCTGAAGGACGTGAACGC 61.222 55.000 2.11 0.00 44.43 4.84
2191 2322 2.358737 GTCCTTGGACGTGGGCAG 60.359 66.667 3.87 0.00 0.00 4.85
2314 2466 3.264897 GATGCGCCGCTCGTCATT 61.265 61.111 11.67 0.00 41.07 2.57
2315 2467 3.723235 AAGATGCGCCGCTCGTCAT 62.723 57.895 11.67 0.00 41.07 3.06
2395 2551 5.912892 ACAATGACGACATACATACATGGA 58.087 37.500 0.00 0.00 35.50 3.41
2413 2585 1.656652 CTGGGAAGCTACGGACAATG 58.343 55.000 0.00 0.00 0.00 2.82
2414 2586 0.107654 GCTGGGAAGCTACGGACAAT 60.108 55.000 0.00 0.00 0.00 2.71
2420 2592 2.029838 AATCAAGCTGGGAAGCTACG 57.970 50.000 0.00 0.00 45.54 3.51
2446 2618 4.330250 ACATCTTTGTCTTCATGACCAGG 58.670 43.478 0.00 0.00 44.75 4.45
2460 2632 7.756722 GTCATCAATCAGGGTAAAACATCTTTG 59.243 37.037 0.00 0.00 0.00 2.77
2464 2636 5.652014 TGGTCATCAATCAGGGTAAAACATC 59.348 40.000 0.00 0.00 0.00 3.06
2482 2654 3.435601 GGAGGCCAGATACAAATGGTCAT 60.436 47.826 5.01 0.00 43.91 3.06
2485 2657 1.134098 CGGAGGCCAGATACAAATGGT 60.134 52.381 5.01 0.00 38.91 3.55
2486 2658 1.134098 ACGGAGGCCAGATACAAATGG 60.134 52.381 5.01 0.00 39.73 3.16
2488 2660 2.643551 CAACGGAGGCCAGATACAAAT 58.356 47.619 5.01 0.00 0.00 2.32
2489 2661 1.948611 GCAACGGAGGCCAGATACAAA 60.949 52.381 5.01 0.00 0.00 2.83
2490 2662 0.392461 GCAACGGAGGCCAGATACAA 60.392 55.000 5.01 0.00 0.00 2.41
2580 3452 8.403236 GGTACTTTGACTTCACACAAAAGTTAT 58.597 33.333 4.61 0.00 37.10 1.89
2581 3453 7.608761 AGGTACTTTGACTTCACACAAAAGTTA 59.391 33.333 4.61 0.00 33.46 2.24
2582 3454 6.433093 AGGTACTTTGACTTCACACAAAAGTT 59.567 34.615 4.61 0.00 33.46 2.66
2583 3455 5.944007 AGGTACTTTGACTTCACACAAAAGT 59.056 36.000 4.69 4.69 35.53 2.66
2584 3456 6.316390 AGAGGTACTTTGACTTCACACAAAAG 59.684 38.462 0.00 0.00 41.55 2.27
2585 3457 6.177610 AGAGGTACTTTGACTTCACACAAAA 58.822 36.000 0.00 0.00 41.55 2.44
2586 3458 5.741011 AGAGGTACTTTGACTTCACACAAA 58.259 37.500 0.00 0.00 41.55 2.83
2589 3461 7.964604 AAATAGAGGTACTTTGACTTCACAC 57.035 36.000 0.00 0.00 41.55 3.82
2590 3462 8.208224 TCAAAATAGAGGTACTTTGACTTCACA 58.792 33.333 2.55 0.00 41.55 3.58
2700 4885 9.565090 TCAACGTCTACTATACCAACTATACAT 57.435 33.333 0.00 0.00 0.00 2.29
2701 4886 8.962884 TCAACGTCTACTATACCAACTATACA 57.037 34.615 0.00 0.00 0.00 2.29
2741 4926 9.434420 TCAAACTTCACAAACTTTGATCAAATT 57.566 25.926 20.76 13.01 29.66 1.82
2742 4927 8.872845 GTCAAACTTCACAAACTTTGATCAAAT 58.127 29.630 20.76 4.90 35.61 2.32
2743 4928 8.087750 AGTCAAACTTCACAAACTTTGATCAAA 58.912 29.630 19.45 19.45 35.61 2.69
2744 4929 7.601856 AGTCAAACTTCACAAACTTTGATCAA 58.398 30.769 3.38 3.38 35.61 2.57
2745 4930 7.156876 AGTCAAACTTCACAAACTTTGATCA 57.843 32.000 8.55 0.00 35.61 2.92
2746 4931 6.412072 CGAGTCAAACTTCACAAACTTTGATC 59.588 38.462 8.55 0.00 35.61 2.92
2747 4932 6.093495 TCGAGTCAAACTTCACAAACTTTGAT 59.907 34.615 8.55 0.00 35.61 2.57
2748 4933 5.410132 TCGAGTCAAACTTCACAAACTTTGA 59.590 36.000 8.55 0.00 31.68 2.69
2749 4934 5.508224 GTCGAGTCAAACTTCACAAACTTTG 59.492 40.000 0.00 0.00 0.00 2.77
2750 4935 5.180492 TGTCGAGTCAAACTTCACAAACTTT 59.820 36.000 0.00 0.00 0.00 2.66
2751 4936 4.693566 TGTCGAGTCAAACTTCACAAACTT 59.306 37.500 0.00 0.00 0.00 2.66
2752 4937 4.250464 TGTCGAGTCAAACTTCACAAACT 58.750 39.130 0.00 0.00 0.00 2.66
2753 4938 4.593597 TGTCGAGTCAAACTTCACAAAC 57.406 40.909 0.00 0.00 0.00 2.93
2754 4939 5.614923 TTTGTCGAGTCAAACTTCACAAA 57.385 34.783 10.88 10.88 37.53 2.83
2755 4940 5.614923 TTTTGTCGAGTCAAACTTCACAA 57.385 34.783 1.02 2.40 37.10 3.33
2756 4941 5.614923 TTTTTGTCGAGTCAAACTTCACA 57.385 34.783 1.02 0.00 37.10 3.58
2757 4942 7.506296 AAATTTTTGTCGAGTCAAACTTCAC 57.494 32.000 1.02 0.00 37.10 3.18
2758 4943 9.796120 ATAAAATTTTTGTCGAGTCAAACTTCA 57.204 25.926 9.06 0.00 37.10 3.02
2762 4947 9.937577 GCATATAAAATTTTTGTCGAGTCAAAC 57.062 29.630 9.06 0.00 37.10 2.93
2763 4948 8.845648 CGCATATAAAATTTTTGTCGAGTCAAA 58.154 29.630 9.06 0.00 35.83 2.69
2764 4949 8.231161 TCGCATATAAAATTTTTGTCGAGTCAA 58.769 29.630 9.06 0.00 0.00 3.18
2765 4950 7.744059 TCGCATATAAAATTTTTGTCGAGTCA 58.256 30.769 9.06 0.00 0.00 3.41
2766 4951 8.595781 TTCGCATATAAAATTTTTGTCGAGTC 57.404 30.769 9.06 0.00 0.00 3.36
2767 4952 8.234546 ACTTCGCATATAAAATTTTTGTCGAGT 58.765 29.630 9.06 10.75 0.00 4.18
2768 4953 8.601243 ACTTCGCATATAAAATTTTTGTCGAG 57.399 30.769 9.06 10.30 0.00 4.04
2782 4967 8.826710 CCTCTGTTTCATTTTACTTCGCATATA 58.173 33.333 0.00 0.00 0.00 0.86
2783 4968 7.201732 CCCTCTGTTTCATTTTACTTCGCATAT 60.202 37.037 0.00 0.00 0.00 1.78
2784 4969 6.093495 CCCTCTGTTTCATTTTACTTCGCATA 59.907 38.462 0.00 0.00 0.00 3.14
2785 4970 5.106157 CCCTCTGTTTCATTTTACTTCGCAT 60.106 40.000 0.00 0.00 0.00 4.73
2786 4971 4.215399 CCCTCTGTTTCATTTTACTTCGCA 59.785 41.667 0.00 0.00 0.00 5.10
2787 4972 4.454504 TCCCTCTGTTTCATTTTACTTCGC 59.545 41.667 0.00 0.00 0.00 4.70
2788 4973 5.701290 ACTCCCTCTGTTTCATTTTACTTCG 59.299 40.000 0.00 0.00 0.00 3.79
2789 4974 7.119407 GGTACTCCCTCTGTTTCATTTTACTTC 59.881 40.741 0.00 0.00 0.00 3.01
2790 4975 6.940867 GGTACTCCCTCTGTTTCATTTTACTT 59.059 38.462 0.00 0.00 0.00 2.24
2791 4976 6.043938 TGGTACTCCCTCTGTTTCATTTTACT 59.956 38.462 0.00 0.00 0.00 2.24
2792 4977 6.148976 GTGGTACTCCCTCTGTTTCATTTTAC 59.851 42.308 0.00 0.00 0.00 2.01
2793 4978 6.183361 TGTGGTACTCCCTCTGTTTCATTTTA 60.183 38.462 0.00 0.00 0.00 1.52
2794 4979 5.070685 GTGGTACTCCCTCTGTTTCATTTT 58.929 41.667 0.00 0.00 0.00 1.82
2795 4980 4.104102 TGTGGTACTCCCTCTGTTTCATTT 59.896 41.667 0.00 0.00 0.00 2.32
2796 4981 3.650942 TGTGGTACTCCCTCTGTTTCATT 59.349 43.478 0.00 0.00 0.00 2.57
2797 4982 3.008049 GTGTGGTACTCCCTCTGTTTCAT 59.992 47.826 0.00 0.00 0.00 2.57
2798 4983 2.367567 GTGTGGTACTCCCTCTGTTTCA 59.632 50.000 0.00 0.00 0.00 2.69
2799 4984 2.633481 AGTGTGGTACTCCCTCTGTTTC 59.367 50.000 0.00 0.00 33.17 2.78
2800 4985 2.368875 CAGTGTGGTACTCCCTCTGTTT 59.631 50.000 0.00 0.00 37.60 2.83
2801 4986 1.971357 CAGTGTGGTACTCCCTCTGTT 59.029 52.381 0.00 0.00 37.60 3.16
2802 4987 1.633774 CAGTGTGGTACTCCCTCTGT 58.366 55.000 0.00 0.00 37.60 3.41
2803 4988 0.247736 GCAGTGTGGTACTCCCTCTG 59.752 60.000 0.00 0.00 37.60 3.35
2804 4989 0.115349 AGCAGTGTGGTACTCCCTCT 59.885 55.000 0.00 0.00 37.60 3.69
2805 4990 0.533032 GAGCAGTGTGGTACTCCCTC 59.467 60.000 0.00 0.00 37.60 4.30
2806 4991 1.251527 CGAGCAGTGTGGTACTCCCT 61.252 60.000 0.00 0.00 37.60 4.20
2807 4992 1.215647 CGAGCAGTGTGGTACTCCC 59.784 63.158 0.00 0.00 37.60 4.30
2808 4993 0.317479 AACGAGCAGTGTGGTACTCC 59.683 55.000 0.00 0.00 37.60 3.85
2809 4994 2.059541 GAAACGAGCAGTGTGGTACTC 58.940 52.381 0.00 0.00 37.60 2.59
2820 5005 5.808540 AGCGTAACATATTTAGAAACGAGCA 59.191 36.000 0.00 0.00 0.00 4.26
2824 5009 6.032722 AGCAGCGTAACATATTTAGAAACG 57.967 37.500 0.00 0.00 0.00 3.60
2844 5029 0.178992 ACCAGCAGCCTGTTTAAGCA 60.179 50.000 0.00 0.00 37.38 3.91
2884 5069 2.571757 GAGCGGATCGTGACCACA 59.428 61.111 0.85 0.00 0.00 4.17
2895 5080 1.977056 ATATGTCTACACGGAGCGGA 58.023 50.000 0.00 0.00 0.00 5.54
2905 5181 5.429957 AAAGACCGACCGTATATGTCTAC 57.570 43.478 0.00 0.00 35.34 2.59
2906 5182 6.095300 TCAAAAAGACCGACCGTATATGTCTA 59.905 38.462 0.00 0.00 35.34 2.59
2909 5185 4.866486 GTCAAAAAGACCGACCGTATATGT 59.134 41.667 0.00 0.00 41.56 2.29
3034 5314 7.838079 TCCCGAATTCAAATGATATGGATTT 57.162 32.000 6.22 0.00 0.00 2.17
3038 5318 8.143193 TCATTTTCCCGAATTCAAATGATATGG 58.857 33.333 19.81 5.70 39.56 2.74
3040 5320 8.917088 ACTCATTTTCCCGAATTCAAATGATAT 58.083 29.630 22.15 15.09 42.13 1.63
3055 5335 2.489722 GCAACAGAGGACTCATTTTCCC 59.510 50.000 1.75 0.00 33.01 3.97
3074 5354 1.738099 GCGAGAGAGAAAAGGCGCA 60.738 57.895 10.83 0.00 43.45 6.09
3107 5387 3.712881 GTCGCACTGCCGGAACAC 61.713 66.667 5.05 0.00 0.00 3.32
3127 5407 6.099701 ACTTATGGTGCTCATCCATACTTGTA 59.900 38.462 4.44 0.00 44.44 2.41
3139 5420 4.261405 CGGAAAACAAACTTATGGTGCTCA 60.261 41.667 0.00 0.00 0.00 4.26
3151 5432 3.964909 ACAGAAGATGCGGAAAACAAAC 58.035 40.909 0.00 0.00 0.00 2.93
3153 5434 3.882888 AGAACAGAAGATGCGGAAAACAA 59.117 39.130 0.00 0.00 0.00 2.83
3187 5468 3.442100 CTCCATACTTTTACCGTCGGAC 58.558 50.000 20.51 0.00 0.00 4.79
3189 5470 2.199236 GCTCCATACTTTTACCGTCGG 58.801 52.381 10.48 10.48 0.00 4.79
3193 5474 3.546020 CGCATTGCTCCATACTTTTACCG 60.546 47.826 7.12 0.00 0.00 4.02
3195 5476 4.332819 AGACGCATTGCTCCATACTTTTAC 59.667 41.667 7.12 0.00 0.00 2.01
3223 5512 1.371183 CACACGAGGAAGCAAGGGA 59.629 57.895 0.00 0.00 0.00 4.20
3235 5524 3.437741 ACACATAGTCGACATACACACGA 59.562 43.478 19.50 0.00 0.00 4.35
3239 5528 3.863424 CCCAACACATAGTCGACATACAC 59.137 47.826 19.50 0.00 0.00 2.90
3249 5538 1.493854 TTCGGGCCCCAACACATAGT 61.494 55.000 18.66 0.00 0.00 2.12
3261 5550 0.393808 TTGCTCCATACTTTCGGGCC 60.394 55.000 0.00 0.00 0.00 5.80
3263 5552 2.107950 TGTTGCTCCATACTTTCGGG 57.892 50.000 0.00 0.00 0.00 5.14
3266 5555 8.538409 AAAAATTGATGTTGCTCCATACTTTC 57.462 30.769 0.00 0.00 0.00 2.62
3329 5630 0.729140 GAGAAAACCAATGTGGCGCG 60.729 55.000 0.00 0.00 42.67 6.86
3353 5654 3.884581 TTGACGTTCGTCCGAGGCG 62.885 63.158 20.02 11.96 34.50 5.52
3354 5655 1.012486 ATTTGACGTTCGTCCGAGGC 61.012 55.000 20.02 0.00 34.50 4.70
3355 5656 0.989890 GATTTGACGTTCGTCCGAGG 59.010 55.000 20.02 0.00 34.50 4.63
3356 5657 0.633733 CGATTTGACGTTCGTCCGAG 59.366 55.000 20.02 6.10 34.50 4.63
3357 5658 0.040157 ACGATTTGACGTTCGTCCGA 60.040 50.000 20.02 10.55 44.72 4.55
3358 5659 0.090676 CACGATTTGACGTTCGTCCG 59.909 55.000 20.02 17.58 46.06 4.79
3359 5660 0.437295 CCACGATTTGACGTTCGTCC 59.563 55.000 20.02 6.17 46.06 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.