Multiple sequence alignment - TraesCS1D01G408900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G408900 chr1D 100.000 2598 0 0 1 2598 470917185 470919782 0.000000e+00 4798
1 TraesCS1D01G408900 chr1D 89.203 778 71 12 1825 2598 40223701 40222933 0.000000e+00 959
2 TraesCS1D01G408900 chr1B 89.878 899 54 18 835 1716 654524374 654525252 0.000000e+00 1122
3 TraesCS1D01G408900 chr1B 91.346 104 8 1 1718 1820 668712216 668712113 9.690000e-30 141
4 TraesCS1D01G408900 chr1A 90.061 825 46 14 834 1654 565117592 565118384 0.000000e+00 1037
5 TraesCS1D01G408900 chr3D 90.805 783 56 9 1825 2598 182343863 182343088 0.000000e+00 1033
6 TraesCS1D01G408900 chr5A 90.331 786 55 16 1822 2598 296305952 296306725 0.000000e+00 1011
7 TraesCS1D01G408900 chr4D 89.898 782 62 13 1827 2598 404225447 404224673 0.000000e+00 990
8 TraesCS1D01G408900 chr2D 89.114 790 61 18 1825 2598 497918340 497917560 0.000000e+00 959
9 TraesCS1D01G408900 chr2D 93.269 104 5 2 1718 1820 477274970 477274868 4.480000e-33 152
10 TraesCS1D01G408900 chr4A 88.903 793 65 17 1825 2598 487544053 487544841 0.000000e+00 955
11 TraesCS1D01G408900 chr6D 89.031 784 63 14 1824 2598 347714748 347713979 0.000000e+00 950
12 TraesCS1D01G408900 chr6D 88.917 785 63 19 1825 2598 77678958 77679729 0.000000e+00 946
13 TraesCS1D01G408900 chr6D 95.283 106 2 2 1718 1820 447825613 447825718 5.750000e-37 165
14 TraesCS1D01G408900 chr7D 88.636 792 66 15 1818 2598 560290186 560290964 0.000000e+00 942
15 TraesCS1D01G408900 chr3B 97.115 104 2 1 1718 1820 786800630 786800527 9.560000e-40 174
16 TraesCS1D01G408900 chr7B 96.154 104 2 2 1718 1820 6886095 6886197 4.450000e-38 169
17 TraesCS1D01G408900 chr5B 95.192 104 3 2 1718 1820 9443976 9444078 2.070000e-36 163
18 TraesCS1D01G408900 chr5B 92.308 104 7 1 1718 1820 26606804 26606701 2.080000e-31 147
19 TraesCS1D01G408900 chr3A 91.589 107 5 4 1718 1822 685129605 685129501 7.490000e-31 145
20 TraesCS1D01G408900 chr6B 90.385 104 8 2 1718 1819 646403530 646403633 4.510000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G408900 chr1D 470917185 470919782 2597 False 4798 4798 100.000 1 2598 1 chr1D.!!$F1 2597
1 TraesCS1D01G408900 chr1D 40222933 40223701 768 True 959 959 89.203 1825 2598 1 chr1D.!!$R1 773
2 TraesCS1D01G408900 chr1B 654524374 654525252 878 False 1122 1122 89.878 835 1716 1 chr1B.!!$F1 881
3 TraesCS1D01G408900 chr1A 565117592 565118384 792 False 1037 1037 90.061 834 1654 1 chr1A.!!$F1 820
4 TraesCS1D01G408900 chr3D 182343088 182343863 775 True 1033 1033 90.805 1825 2598 1 chr3D.!!$R1 773
5 TraesCS1D01G408900 chr5A 296305952 296306725 773 False 1011 1011 90.331 1822 2598 1 chr5A.!!$F1 776
6 TraesCS1D01G408900 chr4D 404224673 404225447 774 True 990 990 89.898 1827 2598 1 chr4D.!!$R1 771
7 TraesCS1D01G408900 chr2D 497917560 497918340 780 True 959 959 89.114 1825 2598 1 chr2D.!!$R2 773
8 TraesCS1D01G408900 chr4A 487544053 487544841 788 False 955 955 88.903 1825 2598 1 chr4A.!!$F1 773
9 TraesCS1D01G408900 chr6D 347713979 347714748 769 True 950 950 89.031 1824 2598 1 chr6D.!!$R1 774
10 TraesCS1D01G408900 chr6D 77678958 77679729 771 False 946 946 88.917 1825 2598 1 chr6D.!!$F1 773
11 TraesCS1D01G408900 chr7D 560290186 560290964 778 False 942 942 88.636 1818 2598 1 chr7D.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 626 0.096976 GTCGGCGGTTCATGACATTG 59.903 55.0 7.21 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 1771 0.03601 ATGTACAGACACTGCTGGCC 60.036 55.0 0.33 0.0 38.76 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.699985 TTCAAAAATCACGAATTTGAAAACATG 57.300 25.926 15.83 0.00 45.14 3.21
75 76 8.877779 TCAAAAATCACGAATTTGAAAACATGT 58.122 25.926 0.00 0.00 39.40 3.21
76 77 9.488124 CAAAAATCACGAATTTGAAAACATGTT 57.512 25.926 4.92 4.92 37.64 2.71
133 134 8.871686 AAAATGTTACTCCAGAAAATGTTCAC 57.128 30.769 0.00 0.00 36.09 3.18
134 135 7.581213 AATGTTACTCCAGAAAATGTTCACA 57.419 32.000 0.00 0.00 36.09 3.58
135 136 7.581213 ATGTTACTCCAGAAAATGTTCACAA 57.419 32.000 0.00 0.00 36.09 3.33
136 137 6.791303 TGTTACTCCAGAAAATGTTCACAAC 58.209 36.000 0.00 0.00 36.09 3.32
137 138 6.601613 TGTTACTCCAGAAAATGTTCACAACT 59.398 34.615 0.00 0.00 36.09 3.16
138 139 7.771361 TGTTACTCCAGAAAATGTTCACAACTA 59.229 33.333 0.00 0.00 36.09 2.24
139 140 8.784043 GTTACTCCAGAAAATGTTCACAACTAT 58.216 33.333 0.00 0.00 36.09 2.12
140 141 7.823745 ACTCCAGAAAATGTTCACAACTATT 57.176 32.000 0.00 0.00 36.09 1.73
141 142 7.651808 ACTCCAGAAAATGTTCACAACTATTG 58.348 34.615 0.00 0.00 36.09 1.90
142 143 7.502226 ACTCCAGAAAATGTTCACAACTATTGA 59.498 33.333 0.00 0.00 36.09 2.57
143 144 8.231692 TCCAGAAAATGTTCACAACTATTGAA 57.768 30.769 0.00 0.00 36.09 2.69
144 145 8.690884 TCCAGAAAATGTTCACAACTATTGAAA 58.309 29.630 0.00 0.00 34.78 2.69
145 146 9.311916 CCAGAAAATGTTCACAACTATTGAAAA 57.688 29.630 0.00 0.00 34.78 2.29
220 221 3.834489 AAAATGTGCATGGGTTTGACA 57.166 38.095 0.00 0.00 0.00 3.58
221 222 3.834489 AAATGTGCATGGGTTTGACAA 57.166 38.095 0.00 0.00 0.00 3.18
222 223 3.834489 AATGTGCATGGGTTTGACAAA 57.166 38.095 0.00 0.00 0.00 2.83
223 224 2.593346 TGTGCATGGGTTTGACAAAC 57.407 45.000 20.60 20.60 40.65 2.93
224 225 1.827344 TGTGCATGGGTTTGACAAACA 59.173 42.857 27.59 12.49 43.15 2.83
225 226 2.433604 TGTGCATGGGTTTGACAAACAT 59.566 40.909 27.59 14.05 43.15 2.71
226 227 2.801679 GTGCATGGGTTTGACAAACATG 59.198 45.455 27.59 23.25 43.15 3.21
227 228 2.697229 TGCATGGGTTTGACAAACATGA 59.303 40.909 27.59 13.87 43.15 3.07
228 229 3.133542 TGCATGGGTTTGACAAACATGAA 59.866 39.130 27.59 17.40 43.15 2.57
229 230 4.202336 TGCATGGGTTTGACAAACATGAAT 60.202 37.500 27.59 14.48 43.15 2.57
230 231 4.756135 GCATGGGTTTGACAAACATGAATT 59.244 37.500 27.59 7.59 43.15 2.17
231 232 5.239087 GCATGGGTTTGACAAACATGAATTT 59.761 36.000 27.59 6.70 43.15 1.82
232 233 6.238703 GCATGGGTTTGACAAACATGAATTTT 60.239 34.615 27.59 5.38 43.15 1.82
233 234 7.041508 GCATGGGTTTGACAAACATGAATTTTA 60.042 33.333 27.59 7.36 43.15 1.52
234 235 8.834465 CATGGGTTTGACAAACATGAATTTTAA 58.166 29.630 27.59 5.48 43.15 1.52
235 236 8.792830 TGGGTTTGACAAACATGAATTTTAAA 57.207 26.923 27.59 0.00 43.15 1.52
236 237 9.231297 TGGGTTTGACAAACATGAATTTTAAAA 57.769 25.926 27.59 2.51 43.15 1.52
263 264 9.986833 AGTTACAAAATTTCAGAAAATGTTTGC 57.013 25.926 19.95 10.80 36.96 3.68
264 265 9.766277 GTTACAAAATTTCAGAAAATGTTTGCA 57.234 25.926 19.95 11.39 36.96 4.08
266 267 8.898983 ACAAAATTTCAGAAAATGTTTGCAAG 57.101 26.923 19.95 6.71 36.96 4.01
267 268 8.513774 ACAAAATTTCAGAAAATGTTTGCAAGT 58.486 25.926 19.95 7.16 36.96 3.16
268 269 9.344309 CAAAATTTCAGAAAATGTTTGCAAGTT 57.656 25.926 13.15 0.00 35.27 2.66
269 270 9.558648 AAAATTTCAGAAAATGTTTGCAAGTTC 57.441 25.926 0.00 0.47 35.27 3.01
270 271 7.846644 ATTTCAGAAAATGTTTGCAAGTTCA 57.153 28.000 0.00 1.34 33.78 3.18
271 272 7.664082 TTTCAGAAAATGTTTGCAAGTTCAA 57.336 28.000 0.00 0.00 0.00 2.69
272 273 7.846644 TTCAGAAAATGTTTGCAAGTTCAAT 57.153 28.000 0.00 0.00 0.00 2.57
273 274 8.939201 TTCAGAAAATGTTTGCAAGTTCAATA 57.061 26.923 0.00 0.00 0.00 1.90
274 275 8.939201 TCAGAAAATGTTTGCAAGTTCAATAA 57.061 26.923 0.00 0.00 0.00 1.40
275 276 9.545105 TCAGAAAATGTTTGCAAGTTCAATAAT 57.455 25.926 0.00 0.00 0.00 1.28
276 277 9.588774 CAGAAAATGTTTGCAAGTTCAATAATG 57.411 29.630 0.00 0.00 0.00 1.90
277 278 9.328845 AGAAAATGTTTGCAAGTTCAATAATGT 57.671 25.926 0.00 0.00 0.00 2.71
278 279 9.934190 GAAAATGTTTGCAAGTTCAATAATGTT 57.066 25.926 0.00 0.00 0.00 2.71
279 280 9.934190 AAAATGTTTGCAAGTTCAATAATGTTC 57.066 25.926 0.00 0.00 0.00 3.18
280 281 8.659925 AATGTTTGCAAGTTCAATAATGTTCA 57.340 26.923 0.00 0.00 0.00 3.18
281 282 8.836268 ATGTTTGCAAGTTCAATAATGTTCAT 57.164 26.923 0.00 0.00 0.00 2.57
282 283 8.074474 TGTTTGCAAGTTCAATAATGTTCATG 57.926 30.769 0.00 0.00 0.00 3.07
283 284 7.171167 TGTTTGCAAGTTCAATAATGTTCATGG 59.829 33.333 0.00 0.00 0.00 3.66
284 285 6.587206 TGCAAGTTCAATAATGTTCATGGA 57.413 33.333 0.00 0.00 0.00 3.41
285 286 7.172868 TGCAAGTTCAATAATGTTCATGGAT 57.827 32.000 0.00 0.00 0.00 3.41
286 287 7.613585 TGCAAGTTCAATAATGTTCATGGATT 58.386 30.769 0.00 0.00 0.00 3.01
287 288 8.095792 TGCAAGTTCAATAATGTTCATGGATTT 58.904 29.630 0.00 0.00 0.00 2.17
288 289 8.385111 GCAAGTTCAATAATGTTCATGGATTTG 58.615 33.333 0.00 0.00 0.00 2.32
289 290 9.642327 CAAGTTCAATAATGTTCATGGATTTGA 57.358 29.630 0.00 0.00 0.00 2.69
326 327 8.768957 TGAATTCAAAAATGTTCACTTTCACA 57.231 26.923 5.45 0.00 0.00 3.58
327 328 8.871862 TGAATTCAAAAATGTTCACTTTCACAG 58.128 29.630 5.45 0.00 0.00 3.66
328 329 9.086336 GAATTCAAAAATGTTCACTTTCACAGA 57.914 29.630 0.00 0.00 0.00 3.41
329 330 9.434420 AATTCAAAAATGTTCACTTTCACAGAA 57.566 25.926 0.00 0.00 0.00 3.02
330 331 9.603921 ATTCAAAAATGTTCACTTTCACAGAAT 57.396 25.926 0.00 0.00 0.00 2.40
331 332 8.410030 TCAAAAATGTTCACTTTCACAGAATG 57.590 30.769 0.00 0.00 46.00 2.67
392 393 9.883142 TTCAGGAATTCAAAAATGTTAACAAGT 57.117 25.926 13.23 0.48 0.00 3.16
393 394 9.883142 TCAGGAATTCAAAAATGTTAACAAGTT 57.117 25.926 13.23 7.21 0.00 2.66
408 409 9.658475 TGTTAACAAGTTTGAGAAATTATCACG 57.342 29.630 5.64 0.00 0.00 4.35
409 410 9.872757 GTTAACAAGTTTGAGAAATTATCACGA 57.127 29.630 0.00 0.00 0.00 4.35
412 413 9.965824 AACAAGTTTGAGAAATTATCACGAATT 57.034 25.926 0.00 0.00 0.00 2.17
413 414 9.965824 ACAAGTTTGAGAAATTATCACGAATTT 57.034 25.926 0.00 0.00 40.81 1.82
427 428 6.042144 TCACGAATTTCCAAAAACATTTGC 57.958 33.333 0.00 0.00 0.00 3.68
428 429 5.582269 TCACGAATTTCCAAAAACATTTGCA 59.418 32.000 0.00 0.00 0.00 4.08
429 430 6.092670 TCACGAATTTCCAAAAACATTTGCAA 59.907 30.769 0.00 0.00 0.00 4.08
430 431 6.411492 CACGAATTTCCAAAAACATTTGCAAG 59.589 34.615 0.00 0.00 0.00 4.01
431 432 6.093357 ACGAATTTCCAAAAACATTTGCAAGT 59.907 30.769 0.00 0.00 0.00 3.16
432 433 6.966066 CGAATTTCCAAAAACATTTGCAAGTT 59.034 30.769 0.00 0.00 0.00 2.66
433 434 7.484324 CGAATTTCCAAAAACATTTGCAAGTTT 59.516 29.630 10.18 10.18 39.46 2.66
434 435 9.138062 GAATTTCCAAAAACATTTGCAAGTTTT 57.862 25.926 18.66 18.66 46.53 2.43
435 436 8.686397 ATTTCCAAAAACATTTGCAAGTTTTC 57.314 26.923 22.43 0.00 44.54 2.29
436 437 6.808008 TCCAAAAACATTTGCAAGTTTTCA 57.192 29.167 22.43 11.78 44.54 2.69
437 438 7.206981 TCCAAAAACATTTGCAAGTTTTCAA 57.793 28.000 22.43 12.55 44.54 2.69
438 439 7.651808 TCCAAAAACATTTGCAAGTTTTCAAA 58.348 26.923 22.43 12.30 44.54 2.69
439 440 8.137437 TCCAAAAACATTTGCAAGTTTTCAAAA 58.863 25.926 22.43 11.06 44.54 2.44
440 441 8.758715 CCAAAAACATTTGCAAGTTTTCAAAAA 58.241 25.926 22.43 0.00 44.54 1.94
512 513 6.313744 ACAGAGAAATAAAAACGGTTCAGG 57.686 37.500 0.00 0.00 0.00 3.86
513 514 5.240844 ACAGAGAAATAAAAACGGTTCAGGG 59.759 40.000 0.00 0.00 0.00 4.45
514 515 5.472137 CAGAGAAATAAAAACGGTTCAGGGA 59.528 40.000 0.00 0.00 0.00 4.20
515 516 6.016610 CAGAGAAATAAAAACGGTTCAGGGAA 60.017 38.462 0.00 0.00 0.00 3.97
516 517 6.206829 AGAGAAATAAAAACGGTTCAGGGAAG 59.793 38.462 0.00 0.00 0.00 3.46
517 518 5.243060 AGAAATAAAAACGGTTCAGGGAAGG 59.757 40.000 0.00 0.00 0.00 3.46
518 519 2.447408 AAAAACGGTTCAGGGAAGGT 57.553 45.000 0.00 0.00 0.00 3.50
519 520 2.447408 AAAACGGTTCAGGGAAGGTT 57.553 45.000 0.00 0.00 0.00 3.50
520 521 3.581265 AAAACGGTTCAGGGAAGGTTA 57.419 42.857 0.00 0.00 0.00 2.85
521 522 3.801307 AAACGGTTCAGGGAAGGTTAT 57.199 42.857 0.00 0.00 0.00 1.89
522 523 4.914177 AAACGGTTCAGGGAAGGTTATA 57.086 40.909 0.00 0.00 0.00 0.98
523 524 4.482952 AACGGTTCAGGGAAGGTTATAG 57.517 45.455 0.00 0.00 0.00 1.31
524 525 3.716431 ACGGTTCAGGGAAGGTTATAGA 58.284 45.455 0.00 0.00 0.00 1.98
525 526 4.098894 ACGGTTCAGGGAAGGTTATAGAA 58.901 43.478 0.00 0.00 0.00 2.10
526 527 4.720273 ACGGTTCAGGGAAGGTTATAGAAT 59.280 41.667 0.00 0.00 0.00 2.40
527 528 5.191124 ACGGTTCAGGGAAGGTTATAGAATT 59.809 40.000 0.00 0.00 0.00 2.17
528 529 5.527582 CGGTTCAGGGAAGGTTATAGAATTG 59.472 44.000 0.00 0.00 0.00 2.32
529 530 6.631766 CGGTTCAGGGAAGGTTATAGAATTGA 60.632 42.308 0.00 0.00 0.00 2.57
530 531 7.116736 GGTTCAGGGAAGGTTATAGAATTGAA 58.883 38.462 0.00 0.00 0.00 2.69
531 532 7.614192 GGTTCAGGGAAGGTTATAGAATTGAAA 59.386 37.037 0.00 0.00 0.00 2.69
532 533 9.020731 GTTCAGGGAAGGTTATAGAATTGAAAA 57.979 33.333 0.00 0.00 0.00 2.29
533 534 9.594936 TTCAGGGAAGGTTATAGAATTGAAAAA 57.405 29.630 0.00 0.00 0.00 1.94
571 572 9.487442 AGGAGATTTCTTATCTTCTCTTGTAGT 57.513 33.333 0.00 0.00 35.90 2.73
582 583 6.936279 TCTTCTCTTGTAGTAATGACTTGGG 58.064 40.000 0.00 0.00 37.10 4.12
583 584 5.086104 TCTCTTGTAGTAATGACTTGGGC 57.914 43.478 0.00 0.00 37.10 5.36
584 585 4.777896 TCTCTTGTAGTAATGACTTGGGCT 59.222 41.667 0.00 0.00 37.10 5.19
585 586 5.248477 TCTCTTGTAGTAATGACTTGGGCTT 59.752 40.000 0.00 0.00 37.10 4.35
586 587 5.488341 TCTTGTAGTAATGACTTGGGCTTC 58.512 41.667 0.00 0.00 37.10 3.86
587 588 5.248477 TCTTGTAGTAATGACTTGGGCTTCT 59.752 40.000 0.00 0.00 37.10 2.85
588 589 5.499004 TGTAGTAATGACTTGGGCTTCTT 57.501 39.130 0.00 0.00 37.10 2.52
589 590 5.245531 TGTAGTAATGACTTGGGCTTCTTG 58.754 41.667 0.00 0.00 37.10 3.02
590 591 4.640771 AGTAATGACTTGGGCTTCTTGA 57.359 40.909 0.00 0.00 28.61 3.02
591 592 4.583871 AGTAATGACTTGGGCTTCTTGAG 58.416 43.478 0.00 0.00 28.61 3.02
592 593 5.105117 AGTAATGACTTGGGCTTCTTGAGC 61.105 45.833 0.00 0.00 41.30 4.26
601 602 0.110010 GCTTCTTGAGCCAACTTCGC 60.110 55.000 0.00 0.00 46.01 4.70
602 603 1.229428 CTTCTTGAGCCAACTTCGCA 58.771 50.000 0.00 0.00 0.00 5.10
603 604 0.944386 TTCTTGAGCCAACTTCGCAC 59.056 50.000 0.00 0.00 0.00 5.34
604 605 0.179059 TCTTGAGCCAACTTCGCACA 60.179 50.000 0.00 0.00 0.00 4.57
605 606 0.877071 CTTGAGCCAACTTCGCACAT 59.123 50.000 0.00 0.00 0.00 3.21
606 607 0.592637 TTGAGCCAACTTCGCACATG 59.407 50.000 0.00 0.00 0.00 3.21
607 608 0.534877 TGAGCCAACTTCGCACATGT 60.535 50.000 0.00 0.00 0.00 3.21
608 609 0.166814 GAGCCAACTTCGCACATGTC 59.833 55.000 0.00 0.00 0.00 3.06
609 610 1.154413 GCCAACTTCGCACATGTCG 60.154 57.895 0.00 3.20 0.00 4.35
610 611 1.497278 CCAACTTCGCACATGTCGG 59.503 57.895 14.72 2.73 0.00 4.79
611 612 1.154413 CAACTTCGCACATGTCGGC 60.154 57.895 14.72 7.75 0.00 5.54
617 618 3.047280 GCACATGTCGGCGGTTCA 61.047 61.111 7.21 4.87 0.00 3.18
618 619 2.398554 GCACATGTCGGCGGTTCAT 61.399 57.895 7.21 7.18 0.00 2.57
619 620 1.425031 CACATGTCGGCGGTTCATG 59.575 57.895 25.67 25.67 42.86 3.07
620 621 1.018752 CACATGTCGGCGGTTCATGA 61.019 55.000 30.23 0.00 40.64 3.07
621 622 1.019278 ACATGTCGGCGGTTCATGAC 61.019 55.000 30.23 14.20 40.64 3.06
622 623 1.018752 CATGTCGGCGGTTCATGACA 61.019 55.000 24.31 14.08 44.58 3.58
623 624 0.107703 ATGTCGGCGGTTCATGACAT 60.108 50.000 7.21 4.52 44.40 3.06
624 625 0.321210 TGTCGGCGGTTCATGACATT 60.321 50.000 7.21 0.00 36.50 2.71
625 626 0.096976 GTCGGCGGTTCATGACATTG 59.903 55.000 7.21 0.00 0.00 2.82
626 627 0.321210 TCGGCGGTTCATGACATTGT 60.321 50.000 7.21 0.00 0.00 2.71
627 628 0.096976 CGGCGGTTCATGACATTGTC 59.903 55.000 9.93 9.93 0.00 3.18
628 629 1.453155 GGCGGTTCATGACATTGTCT 58.547 50.000 17.26 1.18 33.15 3.41
629 630 1.398390 GGCGGTTCATGACATTGTCTC 59.602 52.381 17.26 3.89 33.15 3.36
630 631 1.398390 GCGGTTCATGACATTGTCTCC 59.602 52.381 17.26 10.51 33.15 3.71
631 632 2.698803 CGGTTCATGACATTGTCTCCA 58.301 47.619 17.26 0.00 33.15 3.86
632 633 2.416547 CGGTTCATGACATTGTCTCCAC 59.583 50.000 17.26 8.80 33.15 4.02
633 634 3.679389 GGTTCATGACATTGTCTCCACT 58.321 45.455 17.26 0.00 33.15 4.00
634 635 4.620567 CGGTTCATGACATTGTCTCCACTA 60.621 45.833 17.26 0.00 33.15 2.74
635 636 5.431765 GGTTCATGACATTGTCTCCACTAT 58.568 41.667 17.26 0.00 33.15 2.12
636 637 5.295292 GGTTCATGACATTGTCTCCACTATG 59.705 44.000 17.26 11.20 40.45 2.23
637 638 4.445453 TCATGACATTGTCTCCACTATGC 58.555 43.478 17.26 0.00 38.81 3.14
638 639 3.979101 TGACATTGTCTCCACTATGCA 57.021 42.857 17.26 0.00 38.81 3.96
639 640 4.492494 TGACATTGTCTCCACTATGCAT 57.508 40.909 17.26 3.79 38.81 3.96
640 641 4.193865 TGACATTGTCTCCACTATGCATG 58.806 43.478 17.26 1.82 38.81 4.06
641 642 4.080975 TGACATTGTCTCCACTATGCATGA 60.081 41.667 17.26 0.00 38.81 3.07
642 643 4.194640 ACATTGTCTCCACTATGCATGAC 58.805 43.478 10.16 7.55 38.81 3.06
643 644 4.080695 ACATTGTCTCCACTATGCATGACT 60.081 41.667 10.16 0.00 38.81 3.41
644 645 3.531934 TGTCTCCACTATGCATGACTG 57.468 47.619 10.16 1.23 0.00 3.51
653 654 4.847255 GCATGACTGCGTTTGACC 57.153 55.556 0.00 0.00 38.92 4.02
654 655 1.210155 GCATGACTGCGTTTGACCC 59.790 57.895 0.00 0.00 38.92 4.46
655 656 1.497278 CATGACTGCGTTTGACCCG 59.503 57.895 0.00 0.00 0.00 5.28
656 657 1.671054 ATGACTGCGTTTGACCCGG 60.671 57.895 0.00 0.00 0.00 5.73
657 658 3.047877 GACTGCGTTTGACCCGGG 61.048 66.667 22.25 22.25 0.00 5.73
661 662 4.699522 GCGTTTGACCCGGGCTCT 62.700 66.667 24.08 0.00 0.00 4.09
662 663 2.975536 CGTTTGACCCGGGCTCTA 59.024 61.111 24.08 11.69 0.00 2.43
663 664 1.520666 CGTTTGACCCGGGCTCTAT 59.479 57.895 24.08 0.00 0.00 1.98
664 665 0.810031 CGTTTGACCCGGGCTCTATG 60.810 60.000 24.08 5.69 0.00 2.23
665 666 0.539986 GTTTGACCCGGGCTCTATGA 59.460 55.000 24.08 0.00 0.00 2.15
666 667 1.065709 GTTTGACCCGGGCTCTATGAA 60.066 52.381 24.08 0.00 0.00 2.57
667 668 0.539986 TTGACCCGGGCTCTATGAAC 59.460 55.000 24.08 1.36 0.00 3.18
668 669 0.616395 TGACCCGGGCTCTATGAACA 60.616 55.000 24.08 4.15 0.00 3.18
669 670 0.539986 GACCCGGGCTCTATGAACAA 59.460 55.000 24.08 0.00 0.00 2.83
670 671 0.252197 ACCCGGGCTCTATGAACAAC 59.748 55.000 24.08 0.00 0.00 3.32
671 672 0.251916 CCCGGGCTCTATGAACAACA 59.748 55.000 8.08 0.00 0.00 3.33
672 673 1.134098 CCCGGGCTCTATGAACAACAT 60.134 52.381 8.08 0.00 42.39 2.71
673 674 2.213499 CCGGGCTCTATGAACAACATC 58.787 52.381 0.00 0.00 40.07 3.06
674 675 2.419990 CCGGGCTCTATGAACAACATCA 60.420 50.000 0.00 0.00 40.07 3.07
675 676 3.270027 CGGGCTCTATGAACAACATCAA 58.730 45.455 0.00 0.00 40.07 2.57
676 677 3.689161 CGGGCTCTATGAACAACATCAAA 59.311 43.478 0.00 0.00 40.07 2.69
677 678 4.155826 CGGGCTCTATGAACAACATCAAAA 59.844 41.667 0.00 0.00 40.07 2.44
678 679 5.163622 CGGGCTCTATGAACAACATCAAAAT 60.164 40.000 0.00 0.00 40.07 1.82
679 680 6.268566 GGGCTCTATGAACAACATCAAAATC 58.731 40.000 0.00 0.00 40.07 2.17
680 681 5.967674 GGCTCTATGAACAACATCAAAATCG 59.032 40.000 0.00 0.00 40.07 3.34
681 682 5.453587 GCTCTATGAACAACATCAAAATCGC 59.546 40.000 0.00 0.00 40.07 4.58
682 683 6.676456 GCTCTATGAACAACATCAAAATCGCT 60.676 38.462 0.00 0.00 40.07 4.93
683 684 7.144722 TCTATGAACAACATCAAAATCGCTT 57.855 32.000 0.00 0.00 40.07 4.68
684 685 7.592938 TCTATGAACAACATCAAAATCGCTTT 58.407 30.769 0.00 0.00 40.07 3.51
685 686 5.886715 TGAACAACATCAAAATCGCTTTG 57.113 34.783 4.04 4.04 45.03 2.77
771 772 3.859745 AATACAATGCGCATACACTCG 57.140 42.857 25.61 10.45 0.00 4.18
772 773 2.570442 TACAATGCGCATACACTCGA 57.430 45.000 25.61 2.06 0.00 4.04
773 774 1.720805 ACAATGCGCATACACTCGAA 58.279 45.000 25.61 0.00 0.00 3.71
774 775 2.073056 ACAATGCGCATACACTCGAAA 58.927 42.857 25.61 0.00 0.00 3.46
775 776 2.677836 ACAATGCGCATACACTCGAAAT 59.322 40.909 25.61 0.00 0.00 2.17
776 777 3.242413 ACAATGCGCATACACTCGAAATC 60.242 43.478 25.61 0.00 0.00 2.17
777 778 2.293677 TGCGCATACACTCGAAATCT 57.706 45.000 5.66 0.00 0.00 2.40
778 779 1.926510 TGCGCATACACTCGAAATCTG 59.073 47.619 5.66 0.00 0.00 2.90
779 780 1.927174 GCGCATACACTCGAAATCTGT 59.073 47.619 0.30 0.00 0.00 3.41
780 781 3.113322 GCGCATACACTCGAAATCTGTA 58.887 45.455 0.30 0.00 0.00 2.74
781 782 3.736252 GCGCATACACTCGAAATCTGTAT 59.264 43.478 0.30 0.00 32.42 2.29
782 783 4.915667 GCGCATACACTCGAAATCTGTATA 59.084 41.667 0.30 0.00 31.31 1.47
783 784 5.401376 GCGCATACACTCGAAATCTGTATAA 59.599 40.000 0.30 0.00 31.31 0.98
784 785 6.089551 GCGCATACACTCGAAATCTGTATAAT 59.910 38.462 0.30 0.00 31.31 1.28
785 786 7.359264 GCGCATACACTCGAAATCTGTATAATT 60.359 37.037 0.30 0.00 31.31 1.40
786 787 9.124807 CGCATACACTCGAAATCTGTATAATTA 57.875 33.333 5.04 0.00 31.31 1.40
812 813 8.996271 AGCATACATACAGTCAATATCAACATG 58.004 33.333 0.00 0.00 0.00 3.21
813 814 7.747799 GCATACATACAGTCAATATCAACATGC 59.252 37.037 0.00 0.00 0.00 4.06
814 815 8.996271 CATACATACAGTCAATATCAACATGCT 58.004 33.333 0.00 0.00 0.00 3.79
815 816 7.870509 ACATACAGTCAATATCAACATGCTT 57.129 32.000 0.00 0.00 0.00 3.91
816 817 8.962884 ACATACAGTCAATATCAACATGCTTA 57.037 30.769 0.00 0.00 0.00 3.09
817 818 9.394767 ACATACAGTCAATATCAACATGCTTAA 57.605 29.630 0.00 0.00 0.00 1.85
995 999 1.839424 AACTGCCTACCAGATTTGCC 58.161 50.000 0.00 0.00 44.64 4.52
1052 1062 1.363744 CCGCATCAGAACTCCAGAAC 58.636 55.000 0.00 0.00 0.00 3.01
1060 1073 2.880890 CAGAACTCCAGAACAGGGTTTG 59.119 50.000 0.00 0.00 0.00 2.93
1068 1081 2.752354 CAGAACAGGGTTTGAACACACA 59.248 45.455 0.00 0.00 33.82 3.72
1069 1082 3.192422 CAGAACAGGGTTTGAACACACAA 59.808 43.478 0.00 0.00 33.82 3.33
1070 1083 3.443681 AGAACAGGGTTTGAACACACAAG 59.556 43.478 0.00 0.00 33.82 3.16
1071 1084 3.080300 ACAGGGTTTGAACACACAAGA 57.920 42.857 0.00 0.00 33.82 3.02
1072 1085 3.426615 ACAGGGTTTGAACACACAAGAA 58.573 40.909 0.00 0.00 33.82 2.52
1073 1086 3.829601 ACAGGGTTTGAACACACAAGAAA 59.170 39.130 0.00 0.00 33.82 2.52
1089 1102 9.956797 CACACAAGAAAAAGAAATTGTAACTTG 57.043 29.630 0.00 0.00 34.26 3.16
1104 1117 1.897560 ACTTGCCAAGGCTAACTCAC 58.102 50.000 12.96 0.00 42.51 3.51
1119 1132 0.315568 CTCACCTACTCTATGGCGCC 59.684 60.000 22.73 22.73 0.00 6.53
1129 1142 0.249657 CTATGGCGCCTCTCAAGGAC 60.250 60.000 29.70 0.00 46.67 3.85
1212 1228 5.175859 TGCTGCACAAGGTAGTAAGTAATC 58.824 41.667 0.00 0.00 0.00 1.75
1311 1327 6.590292 ACATTGTGGTCAATCGAGTACTAAAG 59.410 38.462 0.00 0.00 41.66 1.85
1314 1330 6.751157 TGTGGTCAATCGAGTACTAAAGAAA 58.249 36.000 0.00 0.00 0.00 2.52
1315 1331 7.211573 TGTGGTCAATCGAGTACTAAAGAAAA 58.788 34.615 0.00 0.00 0.00 2.29
1368 1384 0.908198 AGGAGTGCAACAGGATCCTC 59.092 55.000 12.69 0.47 41.43 3.71
1393 1409 0.319040 CACAGACAGTGCGTGCTACT 60.319 55.000 0.00 0.00 42.15 2.57
1482 1498 3.738281 GCCAGTTCTACGATACATGCTGT 60.738 47.826 0.00 0.00 0.00 4.40
1494 1510 5.121611 CGATACATGCTGTTGTCTAAAACCA 59.878 40.000 0.00 0.00 0.00 3.67
1521 1537 4.660938 AACAACGGGCTGCCCTCC 62.661 66.667 33.39 9.76 42.67 4.30
1631 1654 5.241506 GGTGAATGATTGACCTGTTTCAAGA 59.758 40.000 6.55 0.00 38.87 3.02
1636 1659 9.346725 GAATGATTGACCTGTTTCAAGATAAAC 57.653 33.333 0.00 0.00 38.87 2.01
1658 1681 8.469309 AAACAATAAGGATATTGGTGATGGAG 57.531 34.615 11.90 0.00 46.34 3.86
1659 1682 7.815383 AACAATAAGGATATTGGTGATGGAGA 58.185 34.615 11.90 0.00 45.53 3.71
1660 1683 7.678947 CAATAAGGATATTGGTGATGGAGAC 57.321 40.000 1.51 0.00 43.06 3.36
1661 1684 7.456725 CAATAAGGATATTGGTGATGGAGACT 58.543 38.462 1.51 0.00 43.06 3.24
1662 1685 4.970860 AGGATATTGGTGATGGAGACTG 57.029 45.455 0.00 0.00 0.00 3.51
1671 1694 3.118629 GGTGATGGAGACTGAGTATGCAA 60.119 47.826 5.35 0.00 27.90 4.08
1675 1698 4.890158 TGGAGACTGAGTATGCAAAAGA 57.110 40.909 0.00 0.00 0.00 2.52
1676 1699 5.426689 TGGAGACTGAGTATGCAAAAGAT 57.573 39.130 0.00 0.00 0.00 2.40
1677 1700 6.544928 TGGAGACTGAGTATGCAAAAGATA 57.455 37.500 0.00 0.00 0.00 1.98
1678 1701 6.946340 TGGAGACTGAGTATGCAAAAGATAA 58.054 36.000 0.00 0.00 0.00 1.75
1679 1702 7.394016 TGGAGACTGAGTATGCAAAAGATAAA 58.606 34.615 0.00 0.00 0.00 1.40
1680 1703 7.334421 TGGAGACTGAGTATGCAAAAGATAAAC 59.666 37.037 0.00 0.00 0.00 2.01
1681 1704 7.550906 GGAGACTGAGTATGCAAAAGATAAACT 59.449 37.037 0.00 0.00 0.00 2.66
1682 1705 8.854614 AGACTGAGTATGCAAAAGATAAACTT 57.145 30.769 0.00 0.00 40.98 2.66
1683 1706 8.725148 AGACTGAGTATGCAAAAGATAAACTTG 58.275 33.333 0.00 0.00 38.98 3.16
1684 1707 7.820648 ACTGAGTATGCAAAAGATAAACTTGG 58.179 34.615 0.00 0.00 38.98 3.61
1721 1744 1.474330 GGGTTGCCCAAGATTAGTGG 58.526 55.000 0.00 0.00 44.65 4.00
1722 1745 0.817654 GGTTGCCCAAGATTAGTGGC 59.182 55.000 0.00 0.00 44.27 5.01
1724 1747 3.827634 GCCCAAGATTAGTGGCGG 58.172 61.111 0.00 0.00 34.56 6.13
1725 1748 1.223487 GCCCAAGATTAGTGGCGGA 59.777 57.895 0.00 0.00 34.56 5.54
1726 1749 1.095807 GCCCAAGATTAGTGGCGGAC 61.096 60.000 0.00 0.00 34.56 4.79
1727 1750 0.463833 CCCAAGATTAGTGGCGGACC 60.464 60.000 0.00 0.00 34.56 4.46
1728 1751 0.541863 CCAAGATTAGTGGCGGACCT 59.458 55.000 0.00 0.00 36.63 3.85
1729 1752 1.760613 CCAAGATTAGTGGCGGACCTA 59.239 52.381 0.00 0.00 36.63 3.08
1730 1753 2.224066 CCAAGATTAGTGGCGGACCTAG 60.224 54.545 0.00 0.00 36.63 3.02
1731 1754 1.041437 AGATTAGTGGCGGACCTAGC 58.959 55.000 0.00 0.00 36.63 3.42
1738 1761 4.162690 GCGGACCTAGCCCACTGG 62.163 72.222 0.00 0.00 0.00 4.00
1761 1784 3.958860 GGTGGGCCAGCAGTGTCT 61.959 66.667 29.78 0.00 34.09 3.41
1762 1785 2.670934 GTGGGCCAGCAGTGTCTG 60.671 66.667 6.40 7.38 34.12 3.51
1763 1786 3.170672 TGGGCCAGCAGTGTCTGT 61.171 61.111 0.00 0.00 33.43 3.41
1764 1787 1.841103 TGGGCCAGCAGTGTCTGTA 60.841 57.895 0.00 0.00 33.43 2.74
1765 1788 1.376037 GGGCCAGCAGTGTCTGTAC 60.376 63.158 4.39 0.00 33.43 2.90
1766 1789 1.371183 GGCCAGCAGTGTCTGTACA 59.629 57.895 0.00 0.00 33.43 2.90
1767 1790 0.036010 GGCCAGCAGTGTCTGTACAT 60.036 55.000 0.00 0.00 38.08 2.29
1768 1791 1.207089 GGCCAGCAGTGTCTGTACATA 59.793 52.381 0.00 0.00 38.08 2.29
1769 1792 2.158900 GGCCAGCAGTGTCTGTACATAT 60.159 50.000 0.00 0.00 38.08 1.78
1770 1793 3.069586 GGCCAGCAGTGTCTGTACATATA 59.930 47.826 0.00 0.00 38.08 0.86
1771 1794 4.051922 GCCAGCAGTGTCTGTACATATAC 58.948 47.826 0.00 0.00 38.08 1.47
1772 1795 4.441495 GCCAGCAGTGTCTGTACATATACA 60.441 45.833 10.11 6.38 39.06 2.29
1773 1796 5.043903 CCAGCAGTGTCTGTACATATACAC 58.956 45.833 20.39 20.39 41.97 2.90
1818 1841 9.723601 TTTTTAGCTTTTCTCCTACGGTATAAA 57.276 29.630 0.00 0.00 0.00 1.40
1819 1842 9.895138 TTTTAGCTTTTCTCCTACGGTATAAAT 57.105 29.630 0.00 0.00 0.00 1.40
1821 1844 9.971922 TTAGCTTTTCTCCTACGGTATAAATAC 57.028 33.333 0.00 0.00 0.00 1.89
1822 1845 7.144000 AGCTTTTCTCCTACGGTATAAATACG 58.856 38.462 0.00 0.00 34.11 3.06
1864 1887 2.187946 CTTCGGGAGCCTCGCAAT 59.812 61.111 9.61 0.00 0.00 3.56
2022 2055 0.414629 TTCCCCCGGTCTTCCTTAGA 59.585 55.000 0.00 0.00 0.00 2.10
2333 2392 1.550524 AGAGTCACGCTATTGCTTCCA 59.449 47.619 0.00 0.00 36.97 3.53
2350 2409 1.287815 CACGAGAGGCACGGTTGTA 59.712 57.895 0.00 0.00 34.93 2.41
2369 2428 1.209383 CTTTCGCGAGAGTCACGGA 59.791 57.895 17.92 4.81 43.69 4.69
2380 2439 3.371063 TCACGGACGTGCCTCTCC 61.371 66.667 19.10 0.00 45.04 3.71
2409 2470 5.115021 GGAAAAAGATACGCGTTTTCTGTTG 59.885 40.000 24.47 0.00 46.97 3.33
2414 2476 5.575019 AGATACGCGTTTTCTGTTGTTTTT 58.425 33.333 20.78 0.00 0.00 1.94
2468 2532 2.712539 CACGGTTGTGCTTTCGCA 59.287 55.556 0.00 0.00 45.60 5.10
2537 2611 3.570912 TTTTTCCCTTCCACGAGAGTT 57.429 42.857 0.00 0.00 46.40 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.913451 TTTCAAATTCGTGATTTTTGAAATCAC 57.087 25.926 25.54 25.54 46.36 3.06
48 49 9.699985 CATGTTTTCAAATTCGTGATTTTTGAA 57.300 25.926 13.08 13.08 43.71 2.69
49 50 8.877779 ACATGTTTTCAAATTCGTGATTTTTGA 58.122 25.926 0.00 5.06 35.79 2.69
50 51 9.488124 AACATGTTTTCAAATTCGTGATTTTTG 57.512 25.926 4.92 0.00 35.79 2.44
107 108 9.313118 GTGAACATTTTCTGGAGTAACATTTTT 57.687 29.630 0.00 0.00 32.36 1.94
108 109 8.474025 TGTGAACATTTTCTGGAGTAACATTTT 58.526 29.630 0.00 0.00 32.36 1.82
109 110 8.006298 TGTGAACATTTTCTGGAGTAACATTT 57.994 30.769 0.00 0.00 32.36 2.32
110 111 7.581213 TGTGAACATTTTCTGGAGTAACATT 57.419 32.000 0.00 0.00 32.36 2.71
111 112 7.285401 AGTTGTGAACATTTTCTGGAGTAACAT 59.715 33.333 0.00 0.00 32.36 2.71
112 113 6.601613 AGTTGTGAACATTTTCTGGAGTAACA 59.398 34.615 0.00 0.00 32.36 2.41
113 114 7.027778 AGTTGTGAACATTTTCTGGAGTAAC 57.972 36.000 0.00 0.00 32.36 2.50
114 115 8.918202 ATAGTTGTGAACATTTTCTGGAGTAA 57.082 30.769 0.00 0.00 32.36 2.24
115 116 8.783093 CAATAGTTGTGAACATTTTCTGGAGTA 58.217 33.333 0.00 0.00 32.36 2.59
116 117 7.502226 TCAATAGTTGTGAACATTTTCTGGAGT 59.498 33.333 0.00 0.00 32.36 3.85
117 118 7.874940 TCAATAGTTGTGAACATTTTCTGGAG 58.125 34.615 0.00 0.00 32.36 3.86
118 119 7.815840 TCAATAGTTGTGAACATTTTCTGGA 57.184 32.000 0.00 0.00 32.36 3.86
119 120 8.870160 TTTCAATAGTTGTGAACATTTTCTGG 57.130 30.769 0.00 0.00 34.78 3.86
199 200 4.148128 TGTCAAACCCATGCACATTTTT 57.852 36.364 0.00 0.00 0.00 1.94
200 201 3.834489 TGTCAAACCCATGCACATTTT 57.166 38.095 0.00 0.00 0.00 1.82
201 202 3.834489 TTGTCAAACCCATGCACATTT 57.166 38.095 0.00 0.00 0.00 2.32
202 203 3.118482 TGTTTGTCAAACCCATGCACATT 60.118 39.130 22.60 0.00 40.67 2.71
203 204 2.433604 TGTTTGTCAAACCCATGCACAT 59.566 40.909 22.60 0.00 40.67 3.21
204 205 1.827344 TGTTTGTCAAACCCATGCACA 59.173 42.857 22.60 2.55 40.67 4.57
205 206 2.593346 TGTTTGTCAAACCCATGCAC 57.407 45.000 22.60 0.00 40.67 4.57
206 207 2.697229 TCATGTTTGTCAAACCCATGCA 59.303 40.909 22.60 6.29 40.67 3.96
207 208 3.383620 TCATGTTTGTCAAACCCATGC 57.616 42.857 22.60 0.80 40.67 4.06
208 209 6.864360 AAATTCATGTTTGTCAAACCCATG 57.136 33.333 22.60 19.50 40.67 3.66
209 210 8.970859 TTAAAATTCATGTTTGTCAAACCCAT 57.029 26.923 22.60 10.10 40.67 4.00
210 211 8.792830 TTTAAAATTCATGTTTGTCAAACCCA 57.207 26.923 22.60 8.30 40.67 4.51
237 238 9.986833 GCAAACATTTTCTGAAATTTTGTAACT 57.013 25.926 21.15 6.39 36.67 2.24
238 239 9.766277 TGCAAACATTTTCTGAAATTTTGTAAC 57.234 25.926 21.15 12.58 36.67 2.50
240 241 9.985318 CTTGCAAACATTTTCTGAAATTTTGTA 57.015 25.926 21.15 17.64 36.67 2.41
241 242 8.513774 ACTTGCAAACATTTTCTGAAATTTTGT 58.486 25.926 21.15 15.27 36.67 2.83
242 243 8.898983 ACTTGCAAACATTTTCTGAAATTTTG 57.101 26.923 18.57 18.57 36.95 2.44
243 244 9.558648 GAACTTGCAAACATTTTCTGAAATTTT 57.441 25.926 3.31 2.06 33.25 1.82
244 245 8.728833 TGAACTTGCAAACATTTTCTGAAATTT 58.271 25.926 3.31 0.00 33.25 1.82
245 246 8.266392 TGAACTTGCAAACATTTTCTGAAATT 57.734 26.923 3.31 0.00 33.25 1.82
246 247 7.846644 TGAACTTGCAAACATTTTCTGAAAT 57.153 28.000 3.31 0.00 35.90 2.17
247 248 7.664082 TTGAACTTGCAAACATTTTCTGAAA 57.336 28.000 0.00 0.00 0.00 2.69
248 249 7.846644 ATTGAACTTGCAAACATTTTCTGAA 57.153 28.000 0.00 0.00 0.00 3.02
249 250 8.939201 TTATTGAACTTGCAAACATTTTCTGA 57.061 26.923 0.00 0.00 0.00 3.27
250 251 9.588774 CATTATTGAACTTGCAAACATTTTCTG 57.411 29.630 0.00 0.00 0.00 3.02
251 252 9.328845 ACATTATTGAACTTGCAAACATTTTCT 57.671 25.926 0.00 0.00 0.00 2.52
252 253 9.934190 AACATTATTGAACTTGCAAACATTTTC 57.066 25.926 0.00 0.00 0.00 2.29
253 254 9.934190 GAACATTATTGAACTTGCAAACATTTT 57.066 25.926 0.00 0.00 0.00 1.82
254 255 9.107177 TGAACATTATTGAACTTGCAAACATTT 57.893 25.926 0.00 0.00 0.00 2.32
255 256 8.659925 TGAACATTATTGAACTTGCAAACATT 57.340 26.923 0.00 0.00 0.00 2.71
256 257 8.714179 CATGAACATTATTGAACTTGCAAACAT 58.286 29.630 0.00 0.00 0.00 2.71
257 258 7.171167 CCATGAACATTATTGAACTTGCAAACA 59.829 33.333 0.00 0.00 0.00 2.83
258 259 7.384660 TCCATGAACATTATTGAACTTGCAAAC 59.615 33.333 0.00 0.00 0.00 2.93
259 260 7.440198 TCCATGAACATTATTGAACTTGCAAA 58.560 30.769 0.00 0.00 0.00 3.68
260 261 6.990798 TCCATGAACATTATTGAACTTGCAA 58.009 32.000 0.00 0.00 0.00 4.08
261 262 6.587206 TCCATGAACATTATTGAACTTGCA 57.413 33.333 0.00 0.00 0.00 4.08
262 263 8.385111 CAAATCCATGAACATTATTGAACTTGC 58.615 33.333 0.00 0.00 0.00 4.01
263 264 9.642327 TCAAATCCATGAACATTATTGAACTTG 57.358 29.630 0.00 0.00 0.00 3.16
300 301 9.381033 TGTGAAAGTGAACATTTTTGAATTCAT 57.619 25.926 9.40 0.00 33.85 2.57
301 302 8.768957 TGTGAAAGTGAACATTTTTGAATTCA 57.231 26.923 3.38 3.38 0.00 2.57
302 303 9.086336 TCTGTGAAAGTGAACATTTTTGAATTC 57.914 29.630 0.00 0.00 0.00 2.17
303 304 9.434420 TTCTGTGAAAGTGAACATTTTTGAATT 57.566 25.926 0.00 0.00 0.00 2.17
304 305 9.603921 ATTCTGTGAAAGTGAACATTTTTGAAT 57.396 25.926 0.00 0.00 0.00 2.57
305 306 8.871862 CATTCTGTGAAAGTGAACATTTTTGAA 58.128 29.630 0.00 0.00 0.00 2.69
306 307 8.034215 ACATTCTGTGAAAGTGAACATTTTTGA 58.966 29.630 0.00 0.00 0.00 2.69
307 308 8.188531 ACATTCTGTGAAAGTGAACATTTTTG 57.811 30.769 0.00 0.00 0.00 2.44
308 309 8.776376 AACATTCTGTGAAAGTGAACATTTTT 57.224 26.923 0.00 0.00 0.00 1.94
309 310 8.658609 CAAACATTCTGTGAAAGTGAACATTTT 58.341 29.630 0.00 0.00 0.00 1.82
310 311 7.201548 GCAAACATTCTGTGAAAGTGAACATTT 60.202 33.333 0.00 0.00 0.00 2.32
311 312 6.256321 GCAAACATTCTGTGAAAGTGAACATT 59.744 34.615 0.00 0.00 0.00 2.71
312 313 5.750067 GCAAACATTCTGTGAAAGTGAACAT 59.250 36.000 0.00 0.00 0.00 2.71
313 314 5.101628 GCAAACATTCTGTGAAAGTGAACA 58.898 37.500 0.00 0.00 0.00 3.18
314 315 5.101628 TGCAAACATTCTGTGAAAGTGAAC 58.898 37.500 0.00 0.00 0.00 3.18
315 316 5.321959 TGCAAACATTCTGTGAAAGTGAA 57.678 34.783 0.00 0.00 0.00 3.18
316 317 4.979943 TGCAAACATTCTGTGAAAGTGA 57.020 36.364 0.00 0.00 0.00 3.41
317 318 6.592798 ATTTGCAAACATTCTGTGAAAGTG 57.407 33.333 15.41 0.00 0.00 3.16
318 319 6.817641 TCAATTTGCAAACATTCTGTGAAAGT 59.182 30.769 15.41 0.00 0.00 2.66
319 320 7.236674 TCAATTTGCAAACATTCTGTGAAAG 57.763 32.000 15.41 0.00 0.00 2.62
320 321 7.606858 TTCAATTTGCAAACATTCTGTGAAA 57.393 28.000 15.41 0.00 0.00 2.69
321 322 7.606858 TTTCAATTTGCAAACATTCTGTGAA 57.393 28.000 15.41 11.88 0.00 3.18
322 323 7.606858 TTTTCAATTTGCAAACATTCTGTGA 57.393 28.000 15.41 6.78 0.00 3.58
323 324 8.844441 ATTTTTCAATTTGCAAACATTCTGTG 57.156 26.923 15.41 4.60 0.00 3.66
366 367 9.883142 ACTTGTTAACATTTTTGAATTCCTGAA 57.117 25.926 9.56 0.00 0.00 3.02
367 368 9.883142 AACTTGTTAACATTTTTGAATTCCTGA 57.117 25.926 9.56 0.00 0.00 3.86
382 383 9.658475 CGTGATAATTTCTCAAACTTGTTAACA 57.342 29.630 3.59 3.59 0.00 2.41
383 384 9.872757 TCGTGATAATTTCTCAAACTTGTTAAC 57.127 29.630 0.00 0.00 0.00 2.01
386 387 9.965824 AATTCGTGATAATTTCTCAAACTTGTT 57.034 25.926 0.00 0.00 0.00 2.83
387 388 9.965824 AAATTCGTGATAATTTCTCAAACTTGT 57.034 25.926 0.00 0.00 34.71 3.16
401 402 8.279103 GCAAATGTTTTTGGAAATTCGTGATAA 58.721 29.630 1.13 0.00 42.09 1.75
402 403 7.439356 TGCAAATGTTTTTGGAAATTCGTGATA 59.561 29.630 0.00 0.00 39.81 2.15
403 404 6.259608 TGCAAATGTTTTTGGAAATTCGTGAT 59.740 30.769 0.00 0.00 39.81 3.06
404 405 5.582269 TGCAAATGTTTTTGGAAATTCGTGA 59.418 32.000 0.00 0.00 39.81 4.35
405 406 5.804173 TGCAAATGTTTTTGGAAATTCGTG 58.196 33.333 0.00 0.00 39.81 4.35
406 407 6.428385 TTGCAAATGTTTTTGGAAATTCGT 57.572 29.167 0.00 0.00 46.18 3.85
412 413 7.206981 TGAAAACTTGCAAATGTTTTTGGAA 57.793 28.000 22.84 11.73 46.73 3.53
413 414 6.808008 TGAAAACTTGCAAATGTTTTTGGA 57.192 29.167 22.84 12.34 43.61 3.53
414 415 7.864307 TTTGAAAACTTGCAAATGTTTTTGG 57.136 28.000 22.84 3.58 43.61 3.28
486 487 8.512138 CCTGAACCGTTTTTATTTCTCTGTATT 58.488 33.333 0.00 0.00 0.00 1.89
487 488 7.120726 CCCTGAACCGTTTTTATTTCTCTGTAT 59.879 37.037 0.00 0.00 0.00 2.29
488 489 6.428771 CCCTGAACCGTTTTTATTTCTCTGTA 59.571 38.462 0.00 0.00 0.00 2.74
489 490 5.240844 CCCTGAACCGTTTTTATTTCTCTGT 59.759 40.000 0.00 0.00 0.00 3.41
490 491 5.472137 TCCCTGAACCGTTTTTATTTCTCTG 59.528 40.000 0.00 0.00 0.00 3.35
491 492 5.627135 TCCCTGAACCGTTTTTATTTCTCT 58.373 37.500 0.00 0.00 0.00 3.10
492 493 5.952526 TCCCTGAACCGTTTTTATTTCTC 57.047 39.130 0.00 0.00 0.00 2.87
493 494 5.243060 CCTTCCCTGAACCGTTTTTATTTCT 59.757 40.000 0.00 0.00 0.00 2.52
494 495 5.010314 ACCTTCCCTGAACCGTTTTTATTTC 59.990 40.000 0.00 0.00 0.00 2.17
495 496 4.897076 ACCTTCCCTGAACCGTTTTTATTT 59.103 37.500 0.00 0.00 0.00 1.40
496 497 4.476297 ACCTTCCCTGAACCGTTTTTATT 58.524 39.130 0.00 0.00 0.00 1.40
497 498 4.108501 ACCTTCCCTGAACCGTTTTTAT 57.891 40.909 0.00 0.00 0.00 1.40
498 499 3.581265 ACCTTCCCTGAACCGTTTTTA 57.419 42.857 0.00 0.00 0.00 1.52
499 500 2.447408 ACCTTCCCTGAACCGTTTTT 57.553 45.000 0.00 0.00 0.00 1.94
500 501 2.447408 AACCTTCCCTGAACCGTTTT 57.553 45.000 0.00 0.00 0.00 2.43
501 502 3.801307 ATAACCTTCCCTGAACCGTTT 57.199 42.857 0.00 0.00 0.00 3.60
502 503 4.098894 TCTATAACCTTCCCTGAACCGTT 58.901 43.478 0.00 0.00 0.00 4.44
503 504 3.716431 TCTATAACCTTCCCTGAACCGT 58.284 45.455 0.00 0.00 0.00 4.83
504 505 4.748277 TTCTATAACCTTCCCTGAACCG 57.252 45.455 0.00 0.00 0.00 4.44
505 506 6.659824 TCAATTCTATAACCTTCCCTGAACC 58.340 40.000 0.00 0.00 0.00 3.62
506 507 8.575649 TTTCAATTCTATAACCTTCCCTGAAC 57.424 34.615 0.00 0.00 0.00 3.18
507 508 9.594936 TTTTTCAATTCTATAACCTTCCCTGAA 57.405 29.630 0.00 0.00 0.00 3.02
545 546 9.487442 ACTACAAGAGAAGATAAGAAATCTCCT 57.513 33.333 0.00 0.00 39.26 3.69
556 557 8.696374 CCCAAGTCATTACTACAAGAGAAGATA 58.304 37.037 0.00 0.00 33.75 1.98
557 558 7.560368 CCCAAGTCATTACTACAAGAGAAGAT 58.440 38.462 0.00 0.00 33.75 2.40
558 559 6.574465 GCCCAAGTCATTACTACAAGAGAAGA 60.574 42.308 0.00 0.00 33.75 2.87
559 560 5.582665 GCCCAAGTCATTACTACAAGAGAAG 59.417 44.000 0.00 0.00 33.75 2.85
560 561 5.248477 AGCCCAAGTCATTACTACAAGAGAA 59.752 40.000 0.00 0.00 33.75 2.87
561 562 4.777896 AGCCCAAGTCATTACTACAAGAGA 59.222 41.667 0.00 0.00 33.75 3.10
562 563 5.091261 AGCCCAAGTCATTACTACAAGAG 57.909 43.478 0.00 0.00 33.75 2.85
563 564 5.248477 AGAAGCCCAAGTCATTACTACAAGA 59.752 40.000 0.00 0.00 33.75 3.02
564 565 5.491982 AGAAGCCCAAGTCATTACTACAAG 58.508 41.667 0.00 0.00 33.75 3.16
565 566 5.499004 AGAAGCCCAAGTCATTACTACAA 57.501 39.130 0.00 0.00 33.75 2.41
566 567 5.012664 TCAAGAAGCCCAAGTCATTACTACA 59.987 40.000 0.00 0.00 33.75 2.74
567 568 5.488341 TCAAGAAGCCCAAGTCATTACTAC 58.512 41.667 0.00 0.00 33.75 2.73
568 569 5.734720 CTCAAGAAGCCCAAGTCATTACTA 58.265 41.667 0.00 0.00 33.75 1.82
569 570 4.583871 CTCAAGAAGCCCAAGTCATTACT 58.416 43.478 0.00 0.00 37.65 2.24
570 571 3.127721 GCTCAAGAAGCCCAAGTCATTAC 59.872 47.826 0.00 0.00 45.92 1.89
571 572 3.347216 GCTCAAGAAGCCCAAGTCATTA 58.653 45.455 0.00 0.00 45.92 1.90
572 573 2.165998 GCTCAAGAAGCCCAAGTCATT 58.834 47.619 0.00 0.00 45.92 2.57
573 574 1.831580 GCTCAAGAAGCCCAAGTCAT 58.168 50.000 0.00 0.00 45.92 3.06
574 575 3.329300 GCTCAAGAAGCCCAAGTCA 57.671 52.632 0.00 0.00 45.92 3.41
583 584 1.069636 GTGCGAAGTTGGCTCAAGAAG 60.070 52.381 11.35 0.00 0.00 2.85
584 585 0.944386 GTGCGAAGTTGGCTCAAGAA 59.056 50.000 11.35 0.00 0.00 2.52
585 586 0.179059 TGTGCGAAGTTGGCTCAAGA 60.179 50.000 11.51 0.00 31.70 3.02
586 587 0.877071 ATGTGCGAAGTTGGCTCAAG 59.123 50.000 16.73 0.00 37.43 3.02
587 588 0.592637 CATGTGCGAAGTTGGCTCAA 59.407 50.000 16.73 1.22 37.43 3.02
588 589 0.534877 ACATGTGCGAAGTTGGCTCA 60.535 50.000 15.44 15.44 38.15 4.26
589 590 0.166814 GACATGTGCGAAGTTGGCTC 59.833 55.000 1.15 8.11 0.00 4.70
590 591 1.568612 CGACATGTGCGAAGTTGGCT 61.569 55.000 1.15 0.00 0.00 4.75
591 592 1.154413 CGACATGTGCGAAGTTGGC 60.154 57.895 1.15 2.45 0.00 4.52
592 593 1.497278 CCGACATGTGCGAAGTTGG 59.503 57.895 1.15 0.00 0.00 3.77
593 594 1.154413 GCCGACATGTGCGAAGTTG 60.154 57.895 1.15 0.00 0.00 3.16
594 595 3.253955 GCCGACATGTGCGAAGTT 58.746 55.556 1.15 0.00 0.00 2.66
600 601 2.398554 ATGAACCGCCGACATGTGC 61.399 57.895 1.15 0.00 0.00 4.57
601 602 1.018752 TCATGAACCGCCGACATGTG 61.019 55.000 1.15 0.00 41.14 3.21
602 603 1.019278 GTCATGAACCGCCGACATGT 61.019 55.000 0.00 0.00 41.14 3.21
603 604 1.018752 TGTCATGAACCGCCGACATG 61.019 55.000 0.00 10.75 41.55 3.21
604 605 0.107703 ATGTCATGAACCGCCGACAT 60.108 50.000 0.00 0.00 42.71 3.06
605 606 0.321210 AATGTCATGAACCGCCGACA 60.321 50.000 0.00 0.00 42.19 4.35
606 607 0.096976 CAATGTCATGAACCGCCGAC 59.903 55.000 0.00 0.00 0.00 4.79
607 608 0.321210 ACAATGTCATGAACCGCCGA 60.321 50.000 0.00 0.00 0.00 5.54
608 609 0.096976 GACAATGTCATGAACCGCCG 59.903 55.000 8.74 0.00 32.09 6.46
609 610 1.398390 GAGACAATGTCATGAACCGCC 59.602 52.381 16.38 0.00 34.60 6.13
610 611 1.398390 GGAGACAATGTCATGAACCGC 59.602 52.381 16.38 0.00 34.60 5.68
611 612 2.416547 GTGGAGACAATGTCATGAACCG 59.583 50.000 16.38 0.00 46.06 4.44
612 613 3.679389 AGTGGAGACAATGTCATGAACC 58.321 45.455 16.38 10.50 46.06 3.62
613 614 5.220739 GCATAGTGGAGACAATGTCATGAAC 60.221 44.000 16.38 8.07 46.06 3.18
614 615 4.877823 GCATAGTGGAGACAATGTCATGAA 59.122 41.667 16.38 0.00 46.06 2.57
615 616 4.080975 TGCATAGTGGAGACAATGTCATGA 60.081 41.667 16.38 0.00 46.06 3.07
616 617 4.193865 TGCATAGTGGAGACAATGTCATG 58.806 43.478 16.38 10.00 46.06 3.07
617 618 4.492494 TGCATAGTGGAGACAATGTCAT 57.508 40.909 16.38 0.54 46.06 3.06
618 619 3.979101 TGCATAGTGGAGACAATGTCA 57.021 42.857 16.38 0.00 46.06 3.58
619 620 4.272018 GTCATGCATAGTGGAGACAATGTC 59.728 45.833 5.02 5.02 46.06 3.06
620 621 4.080695 AGTCATGCATAGTGGAGACAATGT 60.081 41.667 13.26 0.00 46.06 2.71
621 622 4.272748 CAGTCATGCATAGTGGAGACAATG 59.727 45.833 13.26 2.66 46.06 2.82
622 623 4.449131 CAGTCATGCATAGTGGAGACAAT 58.551 43.478 13.26 0.00 46.06 2.71
623 624 3.865446 CAGTCATGCATAGTGGAGACAA 58.135 45.455 13.26 0.00 46.06 3.18
624 625 3.531934 CAGTCATGCATAGTGGAGACA 57.468 47.619 13.26 0.00 38.70 3.41
636 637 1.210155 GGGTCAAACGCAGTCATGC 59.790 57.895 0.00 0.00 45.00 4.06
637 638 1.497278 CGGGTCAAACGCAGTCATG 59.503 57.895 0.00 0.00 45.00 3.07
638 639 1.671054 CCGGGTCAAACGCAGTCAT 60.671 57.895 0.00 0.00 45.00 3.06
639 640 2.280524 CCGGGTCAAACGCAGTCA 60.281 61.111 0.00 0.00 45.00 3.41
640 641 3.047877 CCCGGGTCAAACGCAGTC 61.048 66.667 14.18 0.00 45.00 3.51
644 645 2.588856 ATAGAGCCCGGGTCAAACGC 62.589 60.000 24.63 6.51 31.89 4.84
645 646 0.810031 CATAGAGCCCGGGTCAAACG 60.810 60.000 24.63 3.26 31.89 3.60
646 647 0.539986 TCATAGAGCCCGGGTCAAAC 59.460 55.000 24.63 4.30 31.89 2.93
647 648 1.065709 GTTCATAGAGCCCGGGTCAAA 60.066 52.381 24.63 10.90 31.89 2.69
648 649 0.539986 GTTCATAGAGCCCGGGTCAA 59.460 55.000 24.63 5.83 31.89 3.18
649 650 0.616395 TGTTCATAGAGCCCGGGTCA 60.616 55.000 24.63 5.02 31.89 4.02
650 651 0.539986 TTGTTCATAGAGCCCGGGTC 59.460 55.000 24.63 18.08 0.00 4.46
651 652 0.252197 GTTGTTCATAGAGCCCGGGT 59.748 55.000 24.63 9.10 0.00 5.28
652 653 0.251916 TGTTGTTCATAGAGCCCGGG 59.748 55.000 19.09 19.09 0.00 5.73
653 654 2.213499 GATGTTGTTCATAGAGCCCGG 58.787 52.381 0.00 0.00 36.83 5.73
654 655 2.905075 TGATGTTGTTCATAGAGCCCG 58.095 47.619 0.00 0.00 36.83 6.13
655 656 5.643379 TTTTGATGTTGTTCATAGAGCCC 57.357 39.130 0.00 0.00 36.83 5.19
656 657 5.967674 CGATTTTGATGTTGTTCATAGAGCC 59.032 40.000 0.00 0.00 36.83 4.70
657 658 5.453587 GCGATTTTGATGTTGTTCATAGAGC 59.546 40.000 0.00 0.00 36.83 4.09
658 659 6.779117 AGCGATTTTGATGTTGTTCATAGAG 58.221 36.000 0.00 0.00 36.83 2.43
659 660 6.741992 AGCGATTTTGATGTTGTTCATAGA 57.258 33.333 0.00 0.00 36.83 1.98
660 661 7.801547 AAAGCGATTTTGATGTTGTTCATAG 57.198 32.000 0.00 0.00 36.83 2.23
748 749 5.027737 CGAGTGTATGCGCATTGTATTTTT 58.972 37.500 30.42 3.47 0.00 1.94
749 750 4.331443 TCGAGTGTATGCGCATTGTATTTT 59.669 37.500 30.42 4.34 0.00 1.82
750 751 3.868661 TCGAGTGTATGCGCATTGTATTT 59.131 39.130 30.42 9.78 0.00 1.40
751 752 3.453424 TCGAGTGTATGCGCATTGTATT 58.547 40.909 30.42 11.80 0.00 1.89
752 753 3.092334 TCGAGTGTATGCGCATTGTAT 57.908 42.857 30.42 12.86 0.00 2.29
753 754 2.570442 TCGAGTGTATGCGCATTGTA 57.430 45.000 30.42 12.45 0.00 2.41
754 755 1.720805 TTCGAGTGTATGCGCATTGT 58.279 45.000 30.42 7.91 0.00 2.71
755 756 2.804421 TTTCGAGTGTATGCGCATTG 57.196 45.000 30.42 8.70 0.00 2.82
756 757 3.001634 CAGATTTCGAGTGTATGCGCATT 59.998 43.478 30.42 10.67 0.00 3.56
757 758 2.541346 CAGATTTCGAGTGTATGCGCAT 59.459 45.455 28.23 28.23 0.00 4.73
758 759 1.926510 CAGATTTCGAGTGTATGCGCA 59.073 47.619 14.96 14.96 0.00 6.09
759 760 1.927174 ACAGATTTCGAGTGTATGCGC 59.073 47.619 0.00 0.00 0.00 6.09
760 761 6.986424 TTATACAGATTTCGAGTGTATGCG 57.014 37.500 16.15 0.00 37.80 4.73
786 787 8.996271 CATGTTGATATTGACTGTATGTATGCT 58.004 33.333 0.00 0.00 0.00 3.79
787 788 7.747799 GCATGTTGATATTGACTGTATGTATGC 59.252 37.037 0.00 0.00 0.00 3.14
788 789 8.996271 AGCATGTTGATATTGACTGTATGTATG 58.004 33.333 0.00 0.00 0.00 2.39
789 790 9.565090 AAGCATGTTGATATTGACTGTATGTAT 57.435 29.630 0.00 0.00 0.00 2.29
790 791 8.962884 AAGCATGTTGATATTGACTGTATGTA 57.037 30.769 0.00 0.00 0.00 2.29
791 792 7.870509 AAGCATGTTGATATTGACTGTATGT 57.129 32.000 0.00 0.00 0.00 2.29
813 814 9.722056 GACACATTTATTGGTCTGCTAATTAAG 57.278 33.333 0.00 0.00 0.00 1.85
814 815 9.237187 TGACACATTTATTGGTCTGCTAATTAA 57.763 29.630 0.00 0.00 0.00 1.40
815 816 8.800370 TGACACATTTATTGGTCTGCTAATTA 57.200 30.769 0.00 0.00 0.00 1.40
816 817 7.701539 TGACACATTTATTGGTCTGCTAATT 57.298 32.000 0.00 0.00 0.00 1.40
817 818 7.013655 GGATGACACATTTATTGGTCTGCTAAT 59.986 37.037 0.00 0.00 0.00 1.73
818 819 6.318648 GGATGACACATTTATTGGTCTGCTAA 59.681 38.462 0.00 0.00 0.00 3.09
819 820 5.822519 GGATGACACATTTATTGGTCTGCTA 59.177 40.000 0.00 0.00 0.00 3.49
820 821 4.641989 GGATGACACATTTATTGGTCTGCT 59.358 41.667 0.00 0.00 0.00 4.24
821 822 4.398988 TGGATGACACATTTATTGGTCTGC 59.601 41.667 0.00 0.00 0.00 4.26
822 823 5.882000 TCTGGATGACACATTTATTGGTCTG 59.118 40.000 0.00 0.00 0.00 3.51
823 824 6.065976 TCTGGATGACACATTTATTGGTCT 57.934 37.500 0.00 0.00 0.00 3.85
824 825 6.949352 ATCTGGATGACACATTTATTGGTC 57.051 37.500 0.00 0.00 0.00 4.02
825 826 8.219868 TCATATCTGGATGACACATTTATTGGT 58.780 33.333 0.00 0.00 30.75 3.67
826 827 8.625786 TCATATCTGGATGACACATTTATTGG 57.374 34.615 0.00 0.00 30.75 3.16
831 832 8.991783 AGATTTCATATCTGGATGACACATTT 57.008 30.769 0.00 0.00 35.56 2.32
891 893 7.436320 AATGGCATCTATTTGTTACCCATTT 57.564 32.000 0.00 0.00 38.32 2.32
900 902 8.121305 TGTGTCTTAAAATGGCATCTATTTGT 57.879 30.769 0.00 0.00 0.00 2.83
995 999 9.840427 CTCCTTGGTTGTGTTTATATACAAAAG 57.160 33.333 0.00 0.37 37.17 2.27
1052 1062 4.448537 TTTCTTGTGTGTTCAAACCCTG 57.551 40.909 0.00 0.00 0.00 4.45
1060 1073 9.952341 GTTACAATTTCTTTTTCTTGTGTGTTC 57.048 29.630 0.00 0.00 34.02 3.18
1068 1081 8.785329 TTGGCAAGTTACAATTTCTTTTTCTT 57.215 26.923 0.00 0.00 0.00 2.52
1069 1082 7.495606 CCTTGGCAAGTTACAATTTCTTTTTCT 59.504 33.333 24.57 0.00 0.00 2.52
1070 1083 7.630026 CCTTGGCAAGTTACAATTTCTTTTTC 58.370 34.615 24.57 0.00 0.00 2.29
1071 1084 6.038161 GCCTTGGCAAGTTACAATTTCTTTTT 59.962 34.615 24.57 0.00 0.00 1.94
1072 1085 5.527214 GCCTTGGCAAGTTACAATTTCTTTT 59.473 36.000 24.57 0.00 0.00 2.27
1073 1086 5.056480 GCCTTGGCAAGTTACAATTTCTTT 58.944 37.500 24.57 0.00 0.00 2.52
1089 1102 1.555533 AGTAGGTGAGTTAGCCTTGGC 59.444 52.381 2.97 2.97 36.38 4.52
1104 1117 0.885196 GAGAGGCGCCATAGAGTAGG 59.115 60.000 31.54 0.00 0.00 3.18
1119 1132 0.617249 AGCTCTGGGGTCCTTGAGAG 60.617 60.000 11.62 8.50 35.93 3.20
1129 1142 1.336632 CCAGGAAGAGAGCTCTGGGG 61.337 65.000 23.91 9.09 42.12 4.96
1311 1327 1.138337 TGCATGCACGCACAATTTTC 58.862 45.000 18.46 0.00 36.86 2.29
1393 1409 1.073722 CCAGCTTCTGGCAGTGGAA 59.926 57.895 15.27 0.59 45.13 3.53
1437 1453 4.208686 GTGGGAGGGCTACGCTCG 62.209 72.222 5.69 0.00 43.09 5.03
1455 1471 3.857052 TGTATCGTAGAACTGGCCTTTG 58.143 45.455 3.32 0.00 43.58 2.77
1482 1498 5.560722 TGTCCATCTCTGGTTTTAGACAA 57.439 39.130 0.00 0.00 43.61 3.18
1494 1510 0.321653 GCCCGTTGTTGTCCATCTCT 60.322 55.000 0.00 0.00 0.00 3.10
1521 1537 4.673441 ACCAAGTTAAGATCGATCACTCG 58.327 43.478 26.47 15.78 46.41 4.18
1636 1659 7.389884 CAGTCTCCATCACCAATATCCTTATTG 59.610 40.741 0.00 0.00 42.88 1.90
1642 1665 4.346418 ACTCAGTCTCCATCACCAATATCC 59.654 45.833 0.00 0.00 0.00 2.59
1654 1677 4.890158 TCTTTTGCATACTCAGTCTCCA 57.110 40.909 0.00 0.00 0.00 3.86
1656 1679 8.485976 AGTTTATCTTTTGCATACTCAGTCTC 57.514 34.615 0.00 0.00 0.00 3.36
1658 1681 7.965107 CCAAGTTTATCTTTTGCATACTCAGTC 59.035 37.037 0.00 0.00 33.63 3.51
1659 1682 7.575720 GCCAAGTTTATCTTTTGCATACTCAGT 60.576 37.037 0.00 0.00 33.63 3.41
1660 1683 6.749118 GCCAAGTTTATCTTTTGCATACTCAG 59.251 38.462 0.00 0.00 33.63 3.35
1661 1684 6.208402 TGCCAAGTTTATCTTTTGCATACTCA 59.792 34.615 0.00 0.00 36.82 3.41
1662 1685 6.620678 TGCCAAGTTTATCTTTTGCATACTC 58.379 36.000 0.00 0.00 36.82 2.59
1671 1694 5.807011 GCAAATCGATGCCAAGTTTATCTTT 59.193 36.000 0.00 0.00 40.49 2.52
1684 1707 0.526954 CCTTGCAGGCAAATCGATGC 60.527 55.000 8.20 0.00 45.67 3.91
1720 1743 4.162690 CAGTGGGCTAGGTCCGCC 62.163 72.222 0.00 0.00 46.83 6.13
1721 1744 4.162690 CCAGTGGGCTAGGTCCGC 62.163 72.222 0.00 0.00 38.20 5.54
1722 1745 3.470888 CCCAGTGGGCTAGGTCCG 61.471 72.222 17.33 0.00 35.35 4.79
1744 1767 3.958860 AGACACTGCTGGCCCACC 61.959 66.667 0.00 0.00 0.00 4.61
1745 1768 2.111999 TACAGACACTGCTGGCCCAC 62.112 60.000 0.00 0.00 40.20 4.61
1746 1769 1.841103 TACAGACACTGCTGGCCCA 60.841 57.895 0.00 0.00 40.20 5.36
1747 1770 1.376037 GTACAGACACTGCTGGCCC 60.376 63.158 0.00 0.00 40.20 5.80
1748 1771 0.036010 ATGTACAGACACTGCTGGCC 60.036 55.000 0.33 0.00 38.76 5.36
1749 1772 2.672961 TATGTACAGACACTGCTGGC 57.327 50.000 0.33 0.00 38.76 4.85
1750 1773 5.043903 GTGTATATGTACAGACACTGCTGG 58.956 45.833 22.09 0.00 41.29 4.85
1807 1830 6.666417 AGTTGCTCTCGTATTTATACCGTAG 58.334 40.000 0.00 0.00 0.00 3.51
1808 1831 6.624352 AGTTGCTCTCGTATTTATACCGTA 57.376 37.500 0.00 0.00 0.00 4.02
1809 1832 5.511234 AGTTGCTCTCGTATTTATACCGT 57.489 39.130 0.00 0.00 0.00 4.83
1810 1833 6.666417 ACTAGTTGCTCTCGTATTTATACCG 58.334 40.000 0.00 0.00 0.00 4.02
1811 1834 9.956720 TTAACTAGTTGCTCTCGTATTTATACC 57.043 33.333 18.56 0.00 0.00 2.73
1813 1836 9.655769 CGTTAACTAGTTGCTCTCGTATTTATA 57.344 33.333 18.56 0.00 0.00 0.98
1814 1837 8.400947 TCGTTAACTAGTTGCTCTCGTATTTAT 58.599 33.333 18.56 0.00 0.00 1.40
1815 1838 7.751732 TCGTTAACTAGTTGCTCTCGTATTTA 58.248 34.615 18.56 0.00 0.00 1.40
1816 1839 6.615088 TCGTTAACTAGTTGCTCTCGTATTT 58.385 36.000 18.56 0.00 0.00 1.40
1817 1840 6.187125 TCGTTAACTAGTTGCTCTCGTATT 57.813 37.500 18.56 0.00 0.00 1.89
1818 1841 5.730010 GCTCGTTAACTAGTTGCTCTCGTAT 60.730 44.000 18.56 0.00 0.00 3.06
1819 1842 4.436584 GCTCGTTAACTAGTTGCTCTCGTA 60.437 45.833 18.56 0.00 0.00 3.43
1820 1843 3.670091 GCTCGTTAACTAGTTGCTCTCGT 60.670 47.826 18.56 0.00 0.00 4.18
1821 1844 2.847133 GCTCGTTAACTAGTTGCTCTCG 59.153 50.000 18.56 13.80 0.00 4.04
1822 1845 2.847133 CGCTCGTTAACTAGTTGCTCTC 59.153 50.000 18.56 2.53 0.00 3.20
2322 2380 1.134699 TGCCTCTCGTGGAAGCAATAG 60.135 52.381 2.93 0.00 38.32 1.73
2324 2382 0.674895 GTGCCTCTCGTGGAAGCAAT 60.675 55.000 6.14 0.00 42.24 3.56
2333 2392 1.177256 AGTACAACCGTGCCTCTCGT 61.177 55.000 0.00 0.00 0.00 4.18
2369 2428 1.469335 TTCCTTTCGGAGAGGCACGT 61.469 55.000 9.65 0.00 41.25 4.49
2380 2439 3.717350 ACGCGTATCTTTTTCCTTTCG 57.283 42.857 11.67 0.00 0.00 3.46
2392 2451 5.859824 AAAAACAACAGAAAACGCGTATC 57.140 34.783 14.46 14.83 0.00 2.24
2430 2493 0.179248 CTCTCGCGAAAGAAAACCGC 60.179 55.000 11.33 0.00 44.81 5.68
2522 2594 0.172803 CCGTAACTCTCGTGGAAGGG 59.827 60.000 0.00 0.00 0.00 3.95
2537 2611 1.068895 TCTCGTGGAAGCAAAACCGTA 59.931 47.619 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.