Multiple sequence alignment - TraesCS1D01G408800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G408800 chr1D 100.000 4616 0 0 1 4616 470892840 470897455 0.000000e+00 8525
1 TraesCS1D01G408800 chr1D 97.984 744 14 1 3873 4616 470903135 470903877 0.000000e+00 1290
2 TraesCS1D01G408800 chr1D 84.226 672 59 20 1593 2255 470839195 470838562 1.100000e-170 610
3 TraesCS1D01G408800 chr1A 97.029 3568 86 5 290 3854 564758279 564761829 0.000000e+00 5984
4 TraesCS1D01G408800 chr1B 86.395 1867 193 38 1995 3828 654276913 654275075 0.000000e+00 1984
5 TraesCS1D01G408800 chr1B 87.580 1087 121 10 863 1944 654277945 654276868 0.000000e+00 1247
6 TraesCS1D01G408800 chr7D 97.432 740 18 1 3877 4616 607000727 606999989 0.000000e+00 1260
7 TraesCS1D01G408800 chr7D 97.031 741 21 1 3877 4616 410066630 410065890 0.000000e+00 1245
8 TraesCS1D01G408800 chr3A 97.023 739 21 1 3877 4615 698873743 698873006 0.000000e+00 1242
9 TraesCS1D01G408800 chr5D 96.888 739 23 0 3877 4615 420207804 420208542 0.000000e+00 1238
10 TraesCS1D01G408800 chr5D 96.888 739 23 0 3877 4615 420458691 420457953 0.000000e+00 1238
11 TraesCS1D01G408800 chr3D 96.892 740 22 1 3877 4615 7570414 7569675 0.000000e+00 1238
12 TraesCS1D01G408800 chr3D 96.888 739 23 0 3877 4615 157742393 157743131 0.000000e+00 1238
13 TraesCS1D01G408800 chr6D 96.644 745 23 2 3872 4615 446735069 446734326 0.000000e+00 1236


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G408800 chr1D 470892840 470897455 4615 False 8525.0 8525 100.0000 1 4616 1 chr1D.!!$F1 4615
1 TraesCS1D01G408800 chr1D 470903135 470903877 742 False 1290.0 1290 97.9840 3873 4616 1 chr1D.!!$F2 743
2 TraesCS1D01G408800 chr1D 470838562 470839195 633 True 610.0 610 84.2260 1593 2255 1 chr1D.!!$R1 662
3 TraesCS1D01G408800 chr1A 564758279 564761829 3550 False 5984.0 5984 97.0290 290 3854 1 chr1A.!!$F1 3564
4 TraesCS1D01G408800 chr1B 654275075 654277945 2870 True 1615.5 1984 86.9875 863 3828 2 chr1B.!!$R1 2965
5 TraesCS1D01G408800 chr7D 606999989 607000727 738 True 1260.0 1260 97.4320 3877 4616 1 chr7D.!!$R2 739
6 TraesCS1D01G408800 chr7D 410065890 410066630 740 True 1245.0 1245 97.0310 3877 4616 1 chr7D.!!$R1 739
7 TraesCS1D01G408800 chr3A 698873006 698873743 737 True 1242.0 1242 97.0230 3877 4615 1 chr3A.!!$R1 738
8 TraesCS1D01G408800 chr5D 420207804 420208542 738 False 1238.0 1238 96.8880 3877 4615 1 chr5D.!!$F1 738
9 TraesCS1D01G408800 chr5D 420457953 420458691 738 True 1238.0 1238 96.8880 3877 4615 1 chr5D.!!$R1 738
10 TraesCS1D01G408800 chr3D 7569675 7570414 739 True 1238.0 1238 96.8920 3877 4615 1 chr3D.!!$R1 738
11 TraesCS1D01G408800 chr3D 157742393 157743131 738 False 1238.0 1238 96.8880 3877 4615 1 chr3D.!!$F1 738
12 TraesCS1D01G408800 chr6D 446734326 446735069 743 True 1236.0 1236 96.6440 3872 4615 1 chr6D.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.037734 GTCGGGTTCACCAATTCCCT 59.962 55.000 0.0 0.0 40.22 4.20 F
166 167 0.322816 TTCTCATCTTGTGCAGCCCC 60.323 55.000 0.0 0.0 0.00 5.80 F
203 204 0.478072 TCCATGTGAAGTTGTGGGCT 59.522 50.000 0.0 0.0 32.58 5.19 F
204 205 0.883833 CCATGTGAAGTTGTGGGCTC 59.116 55.000 0.0 0.0 0.00 4.70 F
1984 1989 1.135731 GACGACCACGCTGAGAGAG 59.864 63.158 0.0 0.0 43.96 3.20 F
2341 2353 0.242017 GACCAAGGTGATGTTGCTGC 59.758 55.000 0.0 0.0 0.00 5.25 F
3255 3282 1.152368 CCCCTCATGGAATGCCTCC 59.848 63.158 0.0 0.0 46.21 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 1567 0.832559 GGTCGGATCCCCCTCCTTAG 60.833 65.000 6.06 0.0 32.77 2.18 R
1992 1997 1.702182 TTTGTGCAGGCAAATCTCCA 58.298 45.000 0.00 0.0 33.91 3.86 R
1993 1998 3.696051 TCTATTTGTGCAGGCAAATCTCC 59.304 43.478 16.11 0.0 44.85 3.71 R
2020 2032 3.940221 GCAATTCTGAATGCTCTCTCAGT 59.060 43.478 3.22 0.0 40.06 3.41 R
3027 3039 0.682532 TGCTTTGCAGGGTGTCACAA 60.683 50.000 5.12 0.0 33.32 3.33 R
3409 3436 1.526575 GGTTCATGTGGTGCTGGTGG 61.527 60.000 0.00 0.0 0.00 4.61 R
4589 4642 1.072266 TTTAGGCAGCCCAAAGAGGA 58.928 50.000 8.22 0.0 41.22 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.349824 AGCGTTGAAGAAGAAAGAACATC 57.650 39.130 0.00 0.00 0.00 3.06
23 24 4.084328 AGCGTTGAAGAAGAAAGAACATCG 60.084 41.667 0.00 0.00 0.00 3.84
24 25 4.084537 GCGTTGAAGAAGAAAGAACATCGA 60.085 41.667 0.00 0.00 0.00 3.59
25 26 5.558273 GCGTTGAAGAAGAAAGAACATCGAA 60.558 40.000 0.00 0.00 0.00 3.71
26 27 6.593978 CGTTGAAGAAGAAAGAACATCGAAT 58.406 36.000 0.00 0.00 0.00 3.34
27 28 7.621426 GCGTTGAAGAAGAAAGAACATCGAATA 60.621 37.037 0.00 0.00 0.00 1.75
28 29 8.383619 CGTTGAAGAAGAAAGAACATCGAATAT 58.616 33.333 0.00 0.00 0.00 1.28
29 30 9.695884 GTTGAAGAAGAAAGAACATCGAATATC 57.304 33.333 0.00 0.00 0.00 1.63
30 31 9.435688 TTGAAGAAGAAAGAACATCGAATATCA 57.564 29.630 0.00 0.00 0.00 2.15
31 32 9.435688 TGAAGAAGAAAGAACATCGAATATCAA 57.564 29.630 0.00 0.00 0.00 2.57
34 35 8.394121 AGAAGAAAGAACATCGAATATCAAAGC 58.606 33.333 0.00 0.00 0.00 3.51
35 36 7.615582 AGAAAGAACATCGAATATCAAAGCA 57.384 32.000 0.00 0.00 0.00 3.91
36 37 7.692088 AGAAAGAACATCGAATATCAAAGCAG 58.308 34.615 0.00 0.00 0.00 4.24
37 38 6.992063 AAGAACATCGAATATCAAAGCAGT 57.008 33.333 0.00 0.00 0.00 4.40
38 39 6.595772 AGAACATCGAATATCAAAGCAGTC 57.404 37.500 0.00 0.00 0.00 3.51
39 40 5.525378 AGAACATCGAATATCAAAGCAGTCC 59.475 40.000 0.00 0.00 0.00 3.85
40 41 5.028549 ACATCGAATATCAAAGCAGTCCT 57.971 39.130 0.00 0.00 0.00 3.85
41 42 5.431765 ACATCGAATATCAAAGCAGTCCTT 58.568 37.500 0.00 0.00 34.51 3.36
42 43 6.582636 ACATCGAATATCAAAGCAGTCCTTA 58.417 36.000 0.00 0.00 32.20 2.69
43 44 7.220030 ACATCGAATATCAAAGCAGTCCTTAT 58.780 34.615 0.00 0.00 32.20 1.73
44 45 7.716998 ACATCGAATATCAAAGCAGTCCTTATT 59.283 33.333 0.00 0.00 32.20 1.40
45 46 8.562892 CATCGAATATCAAAGCAGTCCTTATTT 58.437 33.333 0.00 0.00 32.20 1.40
46 47 8.506168 TCGAATATCAAAGCAGTCCTTATTTT 57.494 30.769 0.00 0.00 32.20 1.82
47 48 8.956426 TCGAATATCAAAGCAGTCCTTATTTTT 58.044 29.630 0.00 0.00 32.20 1.94
48 49 9.226345 CGAATATCAAAGCAGTCCTTATTTTTC 57.774 33.333 0.00 0.00 32.20 2.29
53 54 8.871686 TCAAAGCAGTCCTTATTTTTCTTTTC 57.128 30.769 0.00 0.00 32.20 2.29
54 55 7.647715 TCAAAGCAGTCCTTATTTTTCTTTTCG 59.352 33.333 0.00 0.00 32.20 3.46
55 56 6.635030 AGCAGTCCTTATTTTTCTTTTCGT 57.365 33.333 0.00 0.00 0.00 3.85
56 57 6.438763 AGCAGTCCTTATTTTTCTTTTCGTG 58.561 36.000 0.00 0.00 0.00 4.35
57 58 5.629435 GCAGTCCTTATTTTTCTTTTCGTGG 59.371 40.000 0.00 0.00 0.00 4.94
58 59 6.734871 GCAGTCCTTATTTTTCTTTTCGTGGT 60.735 38.462 0.00 0.00 0.00 4.16
59 60 7.520937 GCAGTCCTTATTTTTCTTTTCGTGGTA 60.521 37.037 0.00 0.00 0.00 3.25
60 61 7.801783 CAGTCCTTATTTTTCTTTTCGTGGTAC 59.198 37.037 0.00 0.00 0.00 3.34
61 62 7.040892 AGTCCTTATTTTTCTTTTCGTGGTACC 60.041 37.037 4.43 4.43 0.00 3.34
62 63 6.207221 TCCTTATTTTTCTTTTCGTGGTACCC 59.793 38.462 10.07 0.00 0.00 3.69
63 64 6.208007 CCTTATTTTTCTTTTCGTGGTACCCT 59.792 38.462 10.07 0.00 0.00 4.34
64 65 7.391275 CCTTATTTTTCTTTTCGTGGTACCCTA 59.609 37.037 10.07 0.00 0.00 3.53
65 66 8.866970 TTATTTTTCTTTTCGTGGTACCCTAT 57.133 30.769 10.07 0.00 0.00 2.57
66 67 9.956640 TTATTTTTCTTTTCGTGGTACCCTATA 57.043 29.630 10.07 0.00 0.00 1.31
67 68 8.866970 ATTTTTCTTTTCGTGGTACCCTATAA 57.133 30.769 10.07 0.00 0.00 0.98
68 69 8.866970 TTTTTCTTTTCGTGGTACCCTATAAT 57.133 30.769 10.07 0.00 0.00 1.28
69 70 9.956640 TTTTTCTTTTCGTGGTACCCTATAATA 57.043 29.630 10.07 0.00 0.00 0.98
70 71 9.603921 TTTTCTTTTCGTGGTACCCTATAATAG 57.396 33.333 10.07 3.88 0.00 1.73
71 72 7.902920 TCTTTTCGTGGTACCCTATAATAGT 57.097 36.000 10.07 0.00 0.00 2.12
72 73 7.719483 TCTTTTCGTGGTACCCTATAATAGTG 58.281 38.462 10.07 0.00 0.00 2.74
73 74 7.560991 TCTTTTCGTGGTACCCTATAATAGTGA 59.439 37.037 10.07 0.00 0.00 3.41
74 75 7.658525 TTTCGTGGTACCCTATAATAGTGAA 57.341 36.000 10.07 0.00 0.00 3.18
75 76 6.889301 TCGTGGTACCCTATAATAGTGAAG 57.111 41.667 10.07 0.00 0.00 3.02
76 77 6.367983 TCGTGGTACCCTATAATAGTGAAGT 58.632 40.000 10.07 0.00 0.00 3.01
77 78 6.488006 TCGTGGTACCCTATAATAGTGAAGTC 59.512 42.308 10.07 0.00 0.00 3.01
78 79 6.263842 CGTGGTACCCTATAATAGTGAAGTCA 59.736 42.308 10.07 0.00 0.00 3.41
79 80 7.432059 GTGGTACCCTATAATAGTGAAGTCAC 58.568 42.308 10.07 3.12 46.77 3.67
90 91 3.149005 GTGAAGTCACCCCAATAACCA 57.851 47.619 0.00 0.00 40.85 3.67
91 92 3.697166 GTGAAGTCACCCCAATAACCAT 58.303 45.455 0.00 0.00 40.85 3.55
92 93 3.443681 GTGAAGTCACCCCAATAACCATG 59.556 47.826 0.00 0.00 40.85 3.66
93 94 2.826674 AGTCACCCCAATAACCATGG 57.173 50.000 11.19 11.19 37.71 3.66
101 102 3.311167 CCAATAACCATGGGATGTGGA 57.689 47.619 18.09 0.00 39.12 4.02
102 103 3.848303 CCAATAACCATGGGATGTGGAT 58.152 45.455 18.09 0.00 39.12 3.41
103 104 4.225573 CCAATAACCATGGGATGTGGATT 58.774 43.478 18.09 0.57 39.12 3.01
104 105 5.392995 CCAATAACCATGGGATGTGGATTA 58.607 41.667 18.09 3.09 39.12 1.75
105 106 6.018469 CCAATAACCATGGGATGTGGATTAT 58.982 40.000 18.09 5.47 39.12 1.28
106 107 6.153340 CCAATAACCATGGGATGTGGATTATC 59.847 42.308 18.09 0.00 39.12 1.75
107 108 3.814504 ACCATGGGATGTGGATTATCC 57.185 47.619 18.09 3.91 42.73 2.59
108 109 3.339470 ACCATGGGATGTGGATTATCCT 58.661 45.455 18.09 0.00 42.97 3.24
109 110 3.728990 ACCATGGGATGTGGATTATCCTT 59.271 43.478 18.09 0.00 42.97 3.36
110 111 4.202609 ACCATGGGATGTGGATTATCCTTC 60.203 45.833 18.09 6.80 42.97 3.46
111 112 3.769739 TGGGATGTGGATTATCCTTCG 57.230 47.619 12.91 0.00 42.97 3.79
112 113 3.045634 TGGGATGTGGATTATCCTTCGT 58.954 45.455 12.91 7.06 42.97 3.85
113 114 3.071023 TGGGATGTGGATTATCCTTCGTC 59.929 47.826 12.91 14.38 42.97 4.20
114 115 3.318017 GGATGTGGATTATCCTTCGTCG 58.682 50.000 12.91 0.00 40.75 5.12
115 116 2.882927 TGTGGATTATCCTTCGTCGG 57.117 50.000 12.91 0.00 37.46 4.79
116 117 1.411246 TGTGGATTATCCTTCGTCGGG 59.589 52.381 12.91 0.00 37.46 5.14
117 118 1.411612 GTGGATTATCCTTCGTCGGGT 59.588 52.381 12.91 0.00 37.46 5.28
118 119 2.112998 TGGATTATCCTTCGTCGGGTT 58.887 47.619 12.91 0.00 37.46 4.11
119 120 2.101917 TGGATTATCCTTCGTCGGGTTC 59.898 50.000 12.91 0.00 37.46 3.62
120 121 2.101917 GGATTATCCTTCGTCGGGTTCA 59.898 50.000 3.59 0.00 32.53 3.18
121 122 2.660189 TTATCCTTCGTCGGGTTCAC 57.340 50.000 0.00 0.00 0.00 3.18
122 123 0.819582 TATCCTTCGTCGGGTTCACC 59.180 55.000 0.00 0.00 0.00 4.02
123 124 1.189524 ATCCTTCGTCGGGTTCACCA 61.190 55.000 0.00 0.00 40.22 4.17
124 125 1.070105 CCTTCGTCGGGTTCACCAA 59.930 57.895 0.00 0.00 40.22 3.67
125 126 0.321298 CCTTCGTCGGGTTCACCAAT 60.321 55.000 0.00 0.00 40.22 3.16
126 127 1.519408 CTTCGTCGGGTTCACCAATT 58.481 50.000 0.00 0.00 40.22 2.32
127 128 1.463444 CTTCGTCGGGTTCACCAATTC 59.537 52.381 0.00 0.00 40.22 2.17
128 129 0.320946 TCGTCGGGTTCACCAATTCC 60.321 55.000 0.00 0.00 40.22 3.01
129 130 1.303091 CGTCGGGTTCACCAATTCCC 61.303 60.000 0.00 0.00 40.22 3.97
130 131 0.037734 GTCGGGTTCACCAATTCCCT 59.962 55.000 0.00 0.00 40.22 4.20
131 132 1.279846 GTCGGGTTCACCAATTCCCTA 59.720 52.381 0.00 0.00 40.22 3.53
132 133 1.986631 TCGGGTTCACCAATTCCCTAA 59.013 47.619 0.00 0.00 40.22 2.69
133 134 2.026636 TCGGGTTCACCAATTCCCTAAG 60.027 50.000 0.00 0.00 40.22 2.18
134 135 2.735151 GGGTTCACCAATTCCCTAAGG 58.265 52.381 0.00 0.00 39.85 2.69
135 136 2.310647 GGGTTCACCAATTCCCTAAGGA 59.689 50.000 0.00 0.00 38.97 3.36
136 137 4.042271 GGTTCACCAATTCCCTAAGGAA 57.958 45.455 0.00 0.00 45.56 3.36
137 138 4.017126 GGTTCACCAATTCCCTAAGGAAG 58.983 47.826 0.00 0.00 45.09 3.46
138 139 5.113176 GGTTCACCAATTCCCTAAGGAAGG 61.113 50.000 0.00 0.00 45.09 3.46
139 140 7.522427 GGTTCACCAATTCCCTAAGGAAGGT 62.522 48.000 0.00 0.00 45.09 3.50
149 150 6.262056 TCCCTAAGGAAGGTGGATTTATTC 57.738 41.667 0.00 0.00 44.90 1.75
150 151 5.976870 TCCCTAAGGAAGGTGGATTTATTCT 59.023 40.000 0.00 0.00 44.90 2.40
151 152 6.101296 TCCCTAAGGAAGGTGGATTTATTCTC 59.899 42.308 0.00 0.00 44.90 2.87
152 153 6.126478 CCCTAAGGAAGGTGGATTTATTCTCA 60.126 42.308 0.00 0.00 44.90 3.27
153 154 7.421853 CCCTAAGGAAGGTGGATTTATTCTCAT 60.422 40.741 0.00 0.00 44.90 2.90
154 155 7.663493 CCTAAGGAAGGTGGATTTATTCTCATC 59.337 40.741 0.00 0.00 40.94 2.92
155 156 6.838401 AGGAAGGTGGATTTATTCTCATCT 57.162 37.500 0.00 0.00 0.00 2.90
156 157 7.218314 AGGAAGGTGGATTTATTCTCATCTT 57.782 36.000 0.00 0.00 32.17 2.40
157 158 7.059156 AGGAAGGTGGATTTATTCTCATCTTG 58.941 38.462 0.00 0.00 30.66 3.02
158 159 6.830838 GGAAGGTGGATTTATTCTCATCTTGT 59.169 38.462 0.00 0.00 30.66 3.16
159 160 7.201767 GGAAGGTGGATTTATTCTCATCTTGTG 60.202 40.741 0.00 0.00 30.66 3.33
160 161 5.591877 AGGTGGATTTATTCTCATCTTGTGC 59.408 40.000 0.00 0.00 0.00 4.57
161 162 5.357878 GGTGGATTTATTCTCATCTTGTGCA 59.642 40.000 0.00 0.00 0.00 4.57
162 163 6.459298 GGTGGATTTATTCTCATCTTGTGCAG 60.459 42.308 0.00 0.00 0.00 4.41
163 164 5.066893 TGGATTTATTCTCATCTTGTGCAGC 59.933 40.000 0.00 0.00 0.00 5.25
164 165 4.970662 TTTATTCTCATCTTGTGCAGCC 57.029 40.909 0.00 0.00 0.00 4.85
165 166 1.760192 ATTCTCATCTTGTGCAGCCC 58.240 50.000 0.00 0.00 0.00 5.19
166 167 0.322816 TTCTCATCTTGTGCAGCCCC 60.323 55.000 0.00 0.00 0.00 5.80
167 168 2.046023 TCATCTTGTGCAGCCCCG 60.046 61.111 0.00 0.00 0.00 5.73
168 169 2.360350 CATCTTGTGCAGCCCCGT 60.360 61.111 0.00 0.00 0.00 5.28
169 170 1.078497 CATCTTGTGCAGCCCCGTA 60.078 57.895 0.00 0.00 0.00 4.02
170 171 1.091771 CATCTTGTGCAGCCCCGTAG 61.092 60.000 0.00 0.00 0.00 3.51
171 172 1.264749 ATCTTGTGCAGCCCCGTAGA 61.265 55.000 0.00 0.00 0.00 2.59
172 173 1.448540 CTTGTGCAGCCCCGTAGAG 60.449 63.158 0.00 0.00 0.00 2.43
173 174 2.172483 CTTGTGCAGCCCCGTAGAGT 62.172 60.000 0.00 0.00 0.00 3.24
174 175 2.125512 GTGCAGCCCCGTAGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
175 176 4.082523 TGCAGCCCCGTAGAGTGC 62.083 66.667 0.00 0.00 34.62 4.40
177 178 3.449227 CAGCCCCGTAGAGTGCGA 61.449 66.667 0.00 0.00 0.00 5.10
178 179 3.450115 AGCCCCGTAGAGTGCGAC 61.450 66.667 0.00 0.00 0.00 5.19
179 180 4.509737 GCCCCGTAGAGTGCGACC 62.510 72.222 0.00 0.00 0.00 4.79
180 181 3.066190 CCCCGTAGAGTGCGACCA 61.066 66.667 0.00 0.00 0.00 4.02
181 182 2.423898 CCCCGTAGAGTGCGACCAT 61.424 63.158 0.00 0.00 0.00 3.55
182 183 1.226974 CCCGTAGAGTGCGACCATG 60.227 63.158 0.00 0.00 0.00 3.66
183 184 1.878522 CCGTAGAGTGCGACCATGC 60.879 63.158 0.00 0.00 0.00 4.06
184 185 1.139734 CGTAGAGTGCGACCATGCT 59.860 57.895 0.00 0.00 35.36 3.79
185 186 0.867753 CGTAGAGTGCGACCATGCTC 60.868 60.000 0.00 0.00 35.36 4.26
186 187 0.528684 GTAGAGTGCGACCATGCTCC 60.529 60.000 0.00 0.00 35.36 4.70
187 188 0.970427 TAGAGTGCGACCATGCTCCA 60.970 55.000 0.00 0.00 35.36 3.86
188 189 1.153289 GAGTGCGACCATGCTCCAT 60.153 57.895 0.00 0.00 35.36 3.41
189 190 1.434622 GAGTGCGACCATGCTCCATG 61.435 60.000 0.00 0.00 41.10 3.66
190 191 1.746615 GTGCGACCATGCTCCATGT 60.747 57.895 4.69 0.00 39.94 3.21
191 192 1.746239 TGCGACCATGCTCCATGTG 60.746 57.895 4.69 0.00 39.94 3.21
192 193 1.450134 GCGACCATGCTCCATGTGA 60.450 57.895 4.69 0.00 39.94 3.58
193 194 1.026182 GCGACCATGCTCCATGTGAA 61.026 55.000 4.69 0.00 39.94 3.18
194 195 1.012086 CGACCATGCTCCATGTGAAG 58.988 55.000 4.69 0.00 39.94 3.02
195 196 1.676916 CGACCATGCTCCATGTGAAGT 60.677 52.381 4.69 0.00 39.94 3.01
196 197 2.440409 GACCATGCTCCATGTGAAGTT 58.560 47.619 4.69 0.00 39.94 2.66
197 198 2.163010 GACCATGCTCCATGTGAAGTTG 59.837 50.000 4.69 0.00 39.94 3.16
198 199 2.165167 CCATGCTCCATGTGAAGTTGT 58.835 47.619 4.69 0.00 39.94 3.32
199 200 2.094906 CCATGCTCCATGTGAAGTTGTG 60.095 50.000 4.69 0.00 39.94 3.33
200 201 1.608055 TGCTCCATGTGAAGTTGTGG 58.392 50.000 0.00 0.00 0.00 4.17
201 202 0.883833 GCTCCATGTGAAGTTGTGGG 59.116 55.000 0.00 0.00 32.58 4.61
202 203 0.883833 CTCCATGTGAAGTTGTGGGC 59.116 55.000 0.00 0.00 32.58 5.36
203 204 0.478072 TCCATGTGAAGTTGTGGGCT 59.522 50.000 0.00 0.00 32.58 5.19
204 205 0.883833 CCATGTGAAGTTGTGGGCTC 59.116 55.000 0.00 0.00 0.00 4.70
205 206 1.546323 CCATGTGAAGTTGTGGGCTCT 60.546 52.381 0.00 0.00 0.00 4.09
206 207 2.290260 CCATGTGAAGTTGTGGGCTCTA 60.290 50.000 0.00 0.00 0.00 2.43
207 208 3.614092 CATGTGAAGTTGTGGGCTCTAT 58.386 45.455 0.00 0.00 0.00 1.98
208 209 3.788227 TGTGAAGTTGTGGGCTCTATT 57.212 42.857 0.00 0.00 0.00 1.73
209 210 4.901197 TGTGAAGTTGTGGGCTCTATTA 57.099 40.909 0.00 0.00 0.00 0.98
210 211 4.575885 TGTGAAGTTGTGGGCTCTATTAC 58.424 43.478 0.00 0.00 0.00 1.89
211 212 4.286032 TGTGAAGTTGTGGGCTCTATTACT 59.714 41.667 0.00 0.00 0.00 2.24
212 213 5.482526 TGTGAAGTTGTGGGCTCTATTACTA 59.517 40.000 0.00 0.00 0.00 1.82
213 214 6.014070 TGTGAAGTTGTGGGCTCTATTACTAA 60.014 38.462 0.00 0.00 0.00 2.24
214 215 6.535508 GTGAAGTTGTGGGCTCTATTACTAAG 59.464 42.308 0.00 0.00 0.00 2.18
215 216 5.615925 AGTTGTGGGCTCTATTACTAAGG 57.384 43.478 0.00 0.00 0.00 2.69
216 217 5.030820 AGTTGTGGGCTCTATTACTAAGGT 58.969 41.667 0.00 0.00 0.00 3.50
217 218 5.104900 AGTTGTGGGCTCTATTACTAAGGTG 60.105 44.000 0.00 0.00 0.00 4.00
218 219 4.616553 TGTGGGCTCTATTACTAAGGTGA 58.383 43.478 0.00 0.00 0.00 4.02
219 220 5.027460 TGTGGGCTCTATTACTAAGGTGAA 58.973 41.667 0.00 0.00 0.00 3.18
220 221 5.486063 TGTGGGCTCTATTACTAAGGTGAAA 59.514 40.000 0.00 0.00 0.00 2.69
221 222 6.157994 TGTGGGCTCTATTACTAAGGTGAAAT 59.842 38.462 0.00 0.00 0.00 2.17
222 223 7.054751 GTGGGCTCTATTACTAAGGTGAAATT 58.945 38.462 0.00 0.00 0.00 1.82
223 224 7.556635 GTGGGCTCTATTACTAAGGTGAAATTT 59.443 37.037 0.00 0.00 0.00 1.82
224 225 7.773690 TGGGCTCTATTACTAAGGTGAAATTTC 59.226 37.037 11.41 11.41 0.00 2.17
225 226 7.773690 GGGCTCTATTACTAAGGTGAAATTTCA 59.226 37.037 16.91 16.91 34.20 2.69
226 227 9.343539 GGCTCTATTACTAAGGTGAAATTTCAT 57.656 33.333 23.05 10.68 39.73 2.57
244 245 6.582677 TTTCATATGAAATTCACCCGTTGT 57.417 33.333 23.86 0.00 38.94 3.32
245 246 7.689446 TTTCATATGAAATTCACCCGTTGTA 57.311 32.000 23.86 0.21 38.94 2.41
246 247 7.689446 TTCATATGAAATTCACCCGTTGTAA 57.311 32.000 15.82 0.00 0.00 2.41
247 248 7.689446 TCATATGAAATTCACCCGTTGTAAA 57.311 32.000 1.98 0.00 0.00 2.01
248 249 8.112016 TCATATGAAATTCACCCGTTGTAAAA 57.888 30.769 1.98 0.00 0.00 1.52
249 250 8.240682 TCATATGAAATTCACCCGTTGTAAAAG 58.759 33.333 1.98 0.00 0.00 2.27
250 251 6.642707 ATGAAATTCACCCGTTGTAAAAGA 57.357 33.333 0.00 0.00 0.00 2.52
251 252 5.823353 TGAAATTCACCCGTTGTAAAAGAC 58.177 37.500 0.00 0.00 0.00 3.01
252 253 5.357314 TGAAATTCACCCGTTGTAAAAGACA 59.643 36.000 0.00 0.00 35.78 3.41
253 254 5.838531 AATTCACCCGTTGTAAAAGACAA 57.161 34.783 0.00 0.00 46.03 3.18
265 266 6.723298 TGTAAAAGACAACAAATCCATGGT 57.277 33.333 12.58 0.00 34.15 3.55
266 267 7.118496 TGTAAAAGACAACAAATCCATGGTT 57.882 32.000 12.58 0.00 34.15 3.67
267 268 6.983307 TGTAAAAGACAACAAATCCATGGTTG 59.017 34.615 12.58 12.46 45.52 3.77
272 273 4.852134 CAACAAATCCATGGTTGTCAGA 57.148 40.909 18.25 0.00 36.97 3.27
273 274 4.801891 CAACAAATCCATGGTTGTCAGAG 58.198 43.478 18.25 7.87 36.97 3.35
274 275 4.104383 ACAAATCCATGGTTGTCAGAGT 57.896 40.909 12.58 0.00 32.52 3.24
275 276 5.241403 ACAAATCCATGGTTGTCAGAGTA 57.759 39.130 12.58 0.00 32.52 2.59
276 277 5.003804 ACAAATCCATGGTTGTCAGAGTAC 58.996 41.667 12.58 0.00 32.52 2.73
277 278 3.914426 ATCCATGGTTGTCAGAGTACC 57.086 47.619 12.58 0.00 0.00 3.34
278 279 2.615391 TCCATGGTTGTCAGAGTACCA 58.385 47.619 12.58 6.12 45.32 3.25
279 280 2.976185 TCCATGGTTGTCAGAGTACCAA 59.024 45.455 12.58 0.00 44.49 3.67
280 281 3.007940 TCCATGGTTGTCAGAGTACCAAG 59.992 47.826 12.58 4.03 44.49 3.61
281 282 3.244561 CCATGGTTGTCAGAGTACCAAGT 60.245 47.826 2.57 0.00 44.49 3.16
282 283 4.020573 CCATGGTTGTCAGAGTACCAAGTA 60.021 45.833 2.57 0.00 44.49 2.24
283 284 5.512404 CCATGGTTGTCAGAGTACCAAGTAA 60.512 44.000 2.57 0.00 44.49 2.24
284 285 5.209818 TGGTTGTCAGAGTACCAAGTAAG 57.790 43.478 1.72 0.00 38.92 2.34
285 286 4.897076 TGGTTGTCAGAGTACCAAGTAAGA 59.103 41.667 1.72 0.00 38.92 2.10
286 287 5.542635 TGGTTGTCAGAGTACCAAGTAAGAT 59.457 40.000 1.72 0.00 38.92 2.40
287 288 6.042781 TGGTTGTCAGAGTACCAAGTAAGATT 59.957 38.462 1.72 0.00 38.92 2.40
288 289 6.590677 GGTTGTCAGAGTACCAAGTAAGATTC 59.409 42.308 0.00 0.00 32.12 2.52
289 290 6.282199 TGTCAGAGTACCAAGTAAGATTCC 57.718 41.667 0.00 0.00 0.00 3.01
290 291 6.017192 TGTCAGAGTACCAAGTAAGATTCCT 58.983 40.000 0.00 0.00 0.00 3.36
291 292 6.153000 TGTCAGAGTACCAAGTAAGATTCCTC 59.847 42.308 0.00 0.00 0.00 3.71
292 293 5.657302 TCAGAGTACCAAGTAAGATTCCTCC 59.343 44.000 0.00 0.00 0.00 4.30
293 294 5.422331 CAGAGTACCAAGTAAGATTCCTCCA 59.578 44.000 0.00 0.00 0.00 3.86
294 295 5.659079 AGAGTACCAAGTAAGATTCCTCCAG 59.341 44.000 0.00 0.00 0.00 3.86
295 296 4.717280 AGTACCAAGTAAGATTCCTCCAGG 59.283 45.833 0.00 0.00 0.00 4.45
296 297 2.239907 ACCAAGTAAGATTCCTCCAGGC 59.760 50.000 0.00 0.00 34.44 4.85
301 302 1.376649 AAGATTCCTCCAGGCCTGTT 58.623 50.000 30.63 13.29 34.44 3.16
312 313 5.422012 CCTCCAGGCCTGTTTTAAATAATGT 59.578 40.000 30.63 0.00 0.00 2.71
336 337 2.293677 TGTGAAGTCGAGAGTCAAGGTC 59.706 50.000 0.00 0.00 0.00 3.85
353 354 2.768527 AGGTCATCCAGGACATACACAG 59.231 50.000 0.00 0.00 39.59 3.66
359 360 1.909302 CCAGGACATACACAGGGAAGT 59.091 52.381 0.00 0.00 0.00 3.01
378 379 6.212187 GGGAAGTCTAGTTTACCTACCTCAAA 59.788 42.308 4.37 0.00 0.00 2.69
417 418 4.126520 ACCCAAGTTCCCATACACAATT 57.873 40.909 0.00 0.00 0.00 2.32
423 424 4.510571 AGTTCCCATACACAATTACCGAC 58.489 43.478 0.00 0.00 0.00 4.79
425 426 2.496871 TCCCATACACAATTACCGACGT 59.503 45.455 0.00 0.00 0.00 4.34
432 433 8.602328 CCATACACAATTACCGACGTTTTTATA 58.398 33.333 0.00 0.00 0.00 0.98
480 481 4.457257 GCTATCCCAAAATATGCCTCTCAC 59.543 45.833 0.00 0.00 0.00 3.51
509 510 2.028130 TCGTGCTGGTGTGGAAATTTT 58.972 42.857 0.00 0.00 0.00 1.82
733 734 9.685276 TGTGACATTTGAGGAAATATATGTCTT 57.315 29.630 12.52 0.00 41.33 3.01
1287 1292 2.949644 GGCGCTAATATTGGTCAACCTT 59.050 45.455 7.64 0.00 36.82 3.50
1356 1361 1.198759 ACAGCCACATTACCGAGGGT 61.199 55.000 0.00 0.00 40.16 4.34
1521 1526 2.281484 TTGCACGGTTGGAGCTCC 60.281 61.111 26.78 26.78 0.00 4.70
1562 1567 2.490991 GGGTACCGATGCTGGTATTTC 58.509 52.381 5.65 1.59 45.79 2.17
1929 1934 1.468520 GCACAAATACATCACCACGCT 59.531 47.619 0.00 0.00 0.00 5.07
1969 1974 5.812642 AGAGATTTACCTGCACAAATAGACG 59.187 40.000 0.00 0.00 0.00 4.18
1984 1989 1.135731 GACGACCACGCTGAGAGAG 59.864 63.158 0.00 0.00 43.96 3.20
2020 2032 1.202867 TGCCTGCACAAATAGACCACA 60.203 47.619 0.00 0.00 0.00 4.17
2057 2069 4.655963 AGAATTGCTGAGTTGGAGCTAAA 58.344 39.130 0.00 0.00 37.35 1.85
2073 2085 6.156949 TGGAGCTAAAGTTCCTCAATGACTAT 59.843 38.462 13.23 0.00 44.56 2.12
2082 2094 8.140112 AGTTCCTCAATGACTATTTCTACACT 57.860 34.615 0.00 0.00 0.00 3.55
2232 2244 1.364901 CCACGTCGTACACAGGGTT 59.635 57.895 0.00 0.00 0.00 4.11
2341 2353 0.242017 GACCAAGGTGATGTTGCTGC 59.758 55.000 0.00 0.00 0.00 5.25
2754 2766 1.736681 GCAACAAGCCTCTGTGAGATC 59.263 52.381 0.00 0.00 37.23 2.75
3064 3076 6.205464 GCAAAGCATATACAGAAGGCTGATTA 59.795 38.462 0.00 0.00 45.17 1.75
3089 3104 1.300620 TGCCTCAACAAGACGACCG 60.301 57.895 0.00 0.00 0.00 4.79
3136 3163 3.884693 TCCCAATACGATACTTGCGAGTA 59.115 43.478 16.24 16.24 42.30 2.59
3255 3282 1.152368 CCCCTCATGGAATGCCTCC 59.848 63.158 0.00 0.00 46.21 4.30
3409 3436 1.671379 GAACGGCAAGGAGTGGGAC 60.671 63.158 0.00 0.00 0.00 4.46
3812 3863 7.896811 TGTCTGTATTCTGAACTATCAAGTGT 58.103 34.615 0.00 0.00 35.62 3.55
3855 3906 9.435688 GGAAACAATTAAATGCTTCCTGTATTT 57.564 29.630 15.53 0.00 40.70 1.40
3857 3908 9.995003 AAACAATTAAATGCTTCCTGTATTTGA 57.005 25.926 0.00 0.00 40.34 2.69
3858 3909 9.995003 AACAATTAAATGCTTCCTGTATTTGAA 57.005 25.926 0.00 0.00 40.34 2.69
3859 3910 9.995003 ACAATTAAATGCTTCCTGTATTTGAAA 57.005 25.926 0.00 0.00 40.34 2.69
4140 4193 3.512219 TTACGTGGAAAACCCCTCAAT 57.488 42.857 0.00 0.00 0.00 2.57
4471 4524 5.963253 TCTTCTTCTCTCTTGGAGGATGAAT 59.037 40.000 0.00 0.00 42.10 2.57
4589 4642 1.522900 ATGGGTAGTGGGCTTATGCT 58.477 50.000 0.13 0.00 39.59 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.084328 CGATGTTCTTTCTTCTTCAACGCT 60.084 41.667 0.00 0.00 0.00 5.07
1 2 4.084537 TCGATGTTCTTTCTTCTTCAACGC 60.085 41.667 0.00 0.00 0.00 4.84
3 4 9.695884 GATATTCGATGTTCTTTCTTCTTCAAC 57.304 33.333 0.00 0.00 0.00 3.18
4 5 9.435688 TGATATTCGATGTTCTTTCTTCTTCAA 57.564 29.630 0.00 0.00 0.00 2.69
8 9 8.394121 GCTTTGATATTCGATGTTCTTTCTTCT 58.606 33.333 0.00 0.00 0.00 2.85
10 11 8.044060 TGCTTTGATATTCGATGTTCTTTCTT 57.956 30.769 0.00 0.00 0.00 2.52
11 12 7.335422 ACTGCTTTGATATTCGATGTTCTTTCT 59.665 33.333 0.00 0.00 0.00 2.52
12 13 7.467623 ACTGCTTTGATATTCGATGTTCTTTC 58.532 34.615 0.00 0.00 0.00 2.62
13 14 7.383102 ACTGCTTTGATATTCGATGTTCTTT 57.617 32.000 0.00 0.00 0.00 2.52
14 15 6.037610 GGACTGCTTTGATATTCGATGTTCTT 59.962 38.462 0.00 0.00 0.00 2.52
15 16 5.525378 GGACTGCTTTGATATTCGATGTTCT 59.475 40.000 0.00 0.00 0.00 3.01
16 17 5.525378 AGGACTGCTTTGATATTCGATGTTC 59.475 40.000 0.00 0.00 0.00 3.18
17 18 5.431765 AGGACTGCTTTGATATTCGATGTT 58.568 37.500 0.00 0.00 0.00 2.71
18 19 5.028549 AGGACTGCTTTGATATTCGATGT 57.971 39.130 0.00 0.00 0.00 3.06
19 20 5.998454 AAGGACTGCTTTGATATTCGATG 57.002 39.130 0.00 0.00 0.00 3.84
20 21 8.682936 AAATAAGGACTGCTTTGATATTCGAT 57.317 30.769 0.00 0.00 0.00 3.59
21 22 8.506168 AAAATAAGGACTGCTTTGATATTCGA 57.494 30.769 0.00 0.00 0.00 3.71
22 23 9.226345 GAAAAATAAGGACTGCTTTGATATTCG 57.774 33.333 0.00 0.00 0.00 3.34
27 28 9.481340 GAAAAGAAAAATAAGGACTGCTTTGAT 57.519 29.630 0.00 0.00 0.00 2.57
28 29 7.647715 CGAAAAGAAAAATAAGGACTGCTTTGA 59.352 33.333 0.00 0.00 0.00 2.69
29 30 7.435192 ACGAAAAGAAAAATAAGGACTGCTTTG 59.565 33.333 0.00 0.00 0.00 2.77
30 31 7.435192 CACGAAAAGAAAAATAAGGACTGCTTT 59.565 33.333 0.00 0.00 0.00 3.51
31 32 6.918022 CACGAAAAGAAAAATAAGGACTGCTT 59.082 34.615 0.00 0.00 0.00 3.91
32 33 6.438763 CACGAAAAGAAAAATAAGGACTGCT 58.561 36.000 0.00 0.00 0.00 4.24
33 34 5.629435 CCACGAAAAGAAAAATAAGGACTGC 59.371 40.000 0.00 0.00 0.00 4.40
34 35 6.735130 ACCACGAAAAGAAAAATAAGGACTG 58.265 36.000 0.00 0.00 0.00 3.51
35 36 6.954487 ACCACGAAAAGAAAAATAAGGACT 57.046 33.333 0.00 0.00 0.00 3.85
36 37 7.080099 GGTACCACGAAAAGAAAAATAAGGAC 58.920 38.462 7.15 0.00 0.00 3.85
37 38 7.205737 GGTACCACGAAAAGAAAAATAAGGA 57.794 36.000 7.15 0.00 0.00 3.36
57 58 6.014755 GGGGTGACTTCACTATTATAGGGTAC 60.015 46.154 9.20 0.00 45.73 3.34
58 59 6.080009 GGGGTGACTTCACTATTATAGGGTA 58.920 44.000 9.20 0.00 45.73 3.69
59 60 4.906060 GGGGTGACTTCACTATTATAGGGT 59.094 45.833 9.20 0.00 45.73 4.34
60 61 4.905456 TGGGGTGACTTCACTATTATAGGG 59.095 45.833 9.20 0.00 45.73 3.53
61 62 6.494666 TTGGGGTGACTTCACTATTATAGG 57.505 41.667 9.20 0.00 45.73 2.57
62 63 9.490379 GTTATTGGGGTGACTTCACTATTATAG 57.510 37.037 9.20 0.00 45.73 1.31
63 64 8.434392 GGTTATTGGGGTGACTTCACTATTATA 58.566 37.037 9.20 1.45 45.73 0.98
64 65 7.092174 TGGTTATTGGGGTGACTTCACTATTAT 60.092 37.037 9.20 2.25 45.73 1.28
65 66 6.215841 TGGTTATTGGGGTGACTTCACTATTA 59.784 38.462 9.20 0.00 45.73 0.98
66 67 5.014755 TGGTTATTGGGGTGACTTCACTATT 59.985 40.000 9.20 0.00 45.73 1.73
67 68 4.538490 TGGTTATTGGGGTGACTTCACTAT 59.462 41.667 9.20 1.96 45.73 2.12
68 69 3.911260 TGGTTATTGGGGTGACTTCACTA 59.089 43.478 9.20 0.00 45.73 2.74
69 70 2.714250 TGGTTATTGGGGTGACTTCACT 59.286 45.455 9.20 0.00 45.73 3.41
70 71 3.149005 TGGTTATTGGGGTGACTTCAC 57.851 47.619 0.34 0.34 45.72 3.18
71 72 3.563261 CCATGGTTATTGGGGTGACTTCA 60.563 47.826 2.57 0.00 0.00 3.02
72 73 3.023832 CCATGGTTATTGGGGTGACTTC 58.976 50.000 2.57 0.00 0.00 3.01
73 74 3.100207 CCATGGTTATTGGGGTGACTT 57.900 47.619 2.57 0.00 0.00 3.01
74 75 2.826674 CCATGGTTATTGGGGTGACT 57.173 50.000 2.57 0.00 0.00 3.41
81 82 3.311167 TCCACATCCCATGGTTATTGG 57.689 47.619 11.73 11.72 38.47 3.16
82 83 6.153340 GGATAATCCACATCCCATGGTTATTG 59.847 42.308 11.73 5.04 36.69 1.90
83 84 6.047120 AGGATAATCCACATCCCATGGTTATT 59.953 38.462 11.73 2.40 42.63 1.40
84 85 5.557138 AGGATAATCCACATCCCATGGTTAT 59.443 40.000 11.73 5.38 42.63 1.89
85 86 4.919510 AGGATAATCCACATCCCATGGTTA 59.080 41.667 11.73 0.11 42.63 2.85
86 87 3.728990 AGGATAATCCACATCCCATGGTT 59.271 43.478 11.73 0.00 42.63 3.67
87 88 3.339470 AGGATAATCCACATCCCATGGT 58.661 45.455 11.73 0.00 42.63 3.55
88 89 4.338879 GAAGGATAATCCACATCCCATGG 58.661 47.826 4.14 4.14 42.63 3.66
89 90 4.005650 CGAAGGATAATCCACATCCCATG 58.994 47.826 0.00 0.00 42.63 3.66
90 91 3.652869 ACGAAGGATAATCCACATCCCAT 59.347 43.478 0.00 0.00 42.63 4.00
91 92 3.045634 ACGAAGGATAATCCACATCCCA 58.954 45.455 0.00 0.00 42.63 4.37
92 93 3.665190 GACGAAGGATAATCCACATCCC 58.335 50.000 0.00 0.00 42.63 3.85
93 94 3.318017 CGACGAAGGATAATCCACATCC 58.682 50.000 0.00 0.00 39.61 3.51
94 95 3.318017 CCGACGAAGGATAATCCACATC 58.682 50.000 0.00 0.00 39.61 3.06
95 96 2.037251 CCCGACGAAGGATAATCCACAT 59.963 50.000 0.00 0.00 39.61 3.21
96 97 1.411246 CCCGACGAAGGATAATCCACA 59.589 52.381 0.00 0.00 39.61 4.17
97 98 1.411612 ACCCGACGAAGGATAATCCAC 59.588 52.381 0.00 0.00 39.61 4.02
98 99 1.784358 ACCCGACGAAGGATAATCCA 58.216 50.000 0.00 0.00 39.61 3.41
99 100 2.101917 TGAACCCGACGAAGGATAATCC 59.898 50.000 0.00 0.00 36.58 3.01
100 101 3.121544 GTGAACCCGACGAAGGATAATC 58.878 50.000 0.00 0.00 0.00 1.75
101 102 2.159000 GGTGAACCCGACGAAGGATAAT 60.159 50.000 0.00 0.00 0.00 1.28
102 103 1.205417 GGTGAACCCGACGAAGGATAA 59.795 52.381 0.00 0.00 0.00 1.75
103 104 0.819582 GGTGAACCCGACGAAGGATA 59.180 55.000 0.00 0.00 0.00 2.59
104 105 1.189524 TGGTGAACCCGACGAAGGAT 61.190 55.000 0.00 0.00 35.15 3.24
105 106 1.401318 TTGGTGAACCCGACGAAGGA 61.401 55.000 0.00 0.00 35.15 3.36
106 107 0.321298 ATTGGTGAACCCGACGAAGG 60.321 55.000 0.00 0.00 35.15 3.46
107 108 1.463444 GAATTGGTGAACCCGACGAAG 59.537 52.381 0.00 0.00 35.15 3.79
108 109 1.515081 GAATTGGTGAACCCGACGAA 58.485 50.000 0.00 0.00 35.15 3.85
109 110 0.320946 GGAATTGGTGAACCCGACGA 60.321 55.000 0.00 0.00 35.15 4.20
110 111 1.303091 GGGAATTGGTGAACCCGACG 61.303 60.000 0.00 0.00 35.15 5.12
111 112 0.037734 AGGGAATTGGTGAACCCGAC 59.962 55.000 0.00 0.00 46.13 4.79
112 113 1.659022 TAGGGAATTGGTGAACCCGA 58.341 50.000 0.00 0.00 46.13 5.14
113 114 2.365582 CTTAGGGAATTGGTGAACCCG 58.634 52.381 0.00 0.00 46.13 5.28
114 115 2.310647 TCCTTAGGGAATTGGTGAACCC 59.689 50.000 0.00 0.00 38.93 4.11
115 116 3.732048 TCCTTAGGGAATTGGTGAACC 57.268 47.619 0.00 0.00 38.93 3.62
129 130 8.435982 AGATGAGAATAAATCCACCTTCCTTAG 58.564 37.037 0.00 0.00 0.00 2.18
130 131 8.337118 AGATGAGAATAAATCCACCTTCCTTA 57.663 34.615 0.00 0.00 0.00 2.69
131 132 7.218314 AGATGAGAATAAATCCACCTTCCTT 57.782 36.000 0.00 0.00 0.00 3.36
132 133 6.838401 AGATGAGAATAAATCCACCTTCCT 57.162 37.500 0.00 0.00 0.00 3.36
133 134 6.830838 ACAAGATGAGAATAAATCCACCTTCC 59.169 38.462 0.00 0.00 0.00 3.46
134 135 7.680588 GCACAAGATGAGAATAAATCCACCTTC 60.681 40.741 0.00 0.00 0.00 3.46
135 136 6.096001 GCACAAGATGAGAATAAATCCACCTT 59.904 38.462 0.00 0.00 0.00 3.50
136 137 5.591877 GCACAAGATGAGAATAAATCCACCT 59.408 40.000 0.00 0.00 0.00 4.00
137 138 5.357878 TGCACAAGATGAGAATAAATCCACC 59.642 40.000 0.00 0.00 0.00 4.61
138 139 6.441093 TGCACAAGATGAGAATAAATCCAC 57.559 37.500 0.00 0.00 0.00 4.02
139 140 5.066893 GCTGCACAAGATGAGAATAAATCCA 59.933 40.000 0.00 0.00 0.00 3.41
140 141 5.506982 GGCTGCACAAGATGAGAATAAATCC 60.507 44.000 0.50 0.00 0.00 3.01
141 142 5.506982 GGGCTGCACAAGATGAGAATAAATC 60.507 44.000 0.50 0.00 0.00 2.17
142 143 4.340381 GGGCTGCACAAGATGAGAATAAAT 59.660 41.667 0.50 0.00 0.00 1.40
143 144 3.696051 GGGCTGCACAAGATGAGAATAAA 59.304 43.478 0.50 0.00 0.00 1.40
144 145 3.282021 GGGCTGCACAAGATGAGAATAA 58.718 45.455 0.50 0.00 0.00 1.40
145 146 2.421952 GGGGCTGCACAAGATGAGAATA 60.422 50.000 3.46 0.00 0.00 1.75
146 147 1.684248 GGGGCTGCACAAGATGAGAAT 60.684 52.381 3.46 0.00 0.00 2.40
147 148 0.322816 GGGGCTGCACAAGATGAGAA 60.323 55.000 3.46 0.00 0.00 2.87
148 149 1.300963 GGGGCTGCACAAGATGAGA 59.699 57.895 3.46 0.00 0.00 3.27
149 150 2.110967 CGGGGCTGCACAAGATGAG 61.111 63.158 3.46 0.00 0.00 2.90
150 151 1.549243 TACGGGGCTGCACAAGATGA 61.549 55.000 3.46 0.00 0.00 2.92
151 152 1.078497 TACGGGGCTGCACAAGATG 60.078 57.895 3.46 0.00 0.00 2.90
152 153 1.221840 CTACGGGGCTGCACAAGAT 59.778 57.895 3.46 0.00 0.00 2.40
153 154 1.888436 CTCTACGGGGCTGCACAAGA 61.888 60.000 3.46 2.37 0.00 3.02
154 155 1.448540 CTCTACGGGGCTGCACAAG 60.449 63.158 3.46 0.00 0.00 3.16
155 156 2.214216 ACTCTACGGGGCTGCACAA 61.214 57.895 3.46 0.00 0.00 3.33
156 157 2.603473 ACTCTACGGGGCTGCACA 60.603 61.111 3.46 0.00 0.00 4.57
157 158 2.125512 CACTCTACGGGGCTGCAC 60.126 66.667 0.50 0.00 0.00 4.57
158 159 4.082523 GCACTCTACGGGGCTGCA 62.083 66.667 0.50 0.00 0.00 4.41
160 161 3.449227 TCGCACTCTACGGGGCTG 61.449 66.667 0.00 0.00 0.00 4.85
161 162 3.450115 GTCGCACTCTACGGGGCT 61.450 66.667 0.00 0.00 0.00 5.19
162 163 4.509737 GGTCGCACTCTACGGGGC 62.510 72.222 0.00 0.00 0.00 5.80
163 164 2.423898 ATGGTCGCACTCTACGGGG 61.424 63.158 0.00 0.00 0.00 5.73
164 165 1.226974 CATGGTCGCACTCTACGGG 60.227 63.158 0.00 0.00 0.00 5.28
165 166 1.878522 GCATGGTCGCACTCTACGG 60.879 63.158 0.00 0.00 0.00 4.02
166 167 0.867753 GAGCATGGTCGCACTCTACG 60.868 60.000 9.50 0.00 0.00 3.51
167 168 0.528684 GGAGCATGGTCGCACTCTAC 60.529 60.000 18.14 0.00 0.00 2.59
168 169 0.970427 TGGAGCATGGTCGCACTCTA 60.970 55.000 18.14 0.00 0.00 2.43
169 170 1.620739 ATGGAGCATGGTCGCACTCT 61.621 55.000 18.14 1.36 0.00 3.24
170 171 1.153289 ATGGAGCATGGTCGCACTC 60.153 57.895 18.14 5.10 0.00 3.51
171 172 1.450848 CATGGAGCATGGTCGCACT 60.451 57.895 18.14 0.54 38.11 4.40
172 173 1.746615 ACATGGAGCATGGTCGCAC 60.747 57.895 18.14 5.82 45.16 5.34
173 174 1.746239 CACATGGAGCATGGTCGCA 60.746 57.895 18.14 16.57 45.16 5.10
174 175 1.026182 TTCACATGGAGCATGGTCGC 61.026 55.000 18.14 11.76 45.16 5.19
175 176 1.012086 CTTCACATGGAGCATGGTCG 58.988 55.000 18.14 7.69 45.16 4.79
176 177 2.119801 ACTTCACATGGAGCATGGTC 57.880 50.000 16.65 16.65 45.16 4.02
177 178 2.165167 CAACTTCACATGGAGCATGGT 58.835 47.619 0.00 0.00 45.16 3.55
178 179 2.094906 CACAACTTCACATGGAGCATGG 60.095 50.000 0.00 0.00 45.16 3.66
179 180 2.094906 CCACAACTTCACATGGAGCATG 60.095 50.000 0.00 0.00 46.18 4.06
180 181 2.165167 CCACAACTTCACATGGAGCAT 58.835 47.619 0.00 0.00 33.80 3.79
181 182 1.608055 CCACAACTTCACATGGAGCA 58.392 50.000 0.00 0.00 33.80 4.26
182 183 0.883833 CCCACAACTTCACATGGAGC 59.116 55.000 0.00 0.00 33.80 4.70
183 184 0.883833 GCCCACAACTTCACATGGAG 59.116 55.000 0.00 0.00 33.80 3.86
184 185 0.478072 AGCCCACAACTTCACATGGA 59.522 50.000 0.00 0.00 33.80 3.41
185 186 0.883833 GAGCCCACAACTTCACATGG 59.116 55.000 0.00 0.00 0.00 3.66
186 187 1.901591 AGAGCCCACAACTTCACATG 58.098 50.000 0.00 0.00 0.00 3.21
187 188 4.307032 AATAGAGCCCACAACTTCACAT 57.693 40.909 0.00 0.00 0.00 3.21
188 189 3.788227 AATAGAGCCCACAACTTCACA 57.212 42.857 0.00 0.00 0.00 3.58
189 190 4.833390 AGTAATAGAGCCCACAACTTCAC 58.167 43.478 0.00 0.00 0.00 3.18
190 191 6.351881 CCTTAGTAATAGAGCCCACAACTTCA 60.352 42.308 0.00 0.00 0.00 3.02
191 192 6.049790 CCTTAGTAATAGAGCCCACAACTTC 58.950 44.000 0.00 0.00 0.00 3.01
192 193 5.487845 ACCTTAGTAATAGAGCCCACAACTT 59.512 40.000 0.00 0.00 0.00 2.66
193 194 5.030820 ACCTTAGTAATAGAGCCCACAACT 58.969 41.667 0.00 0.00 0.00 3.16
194 195 5.105064 TCACCTTAGTAATAGAGCCCACAAC 60.105 44.000 0.00 0.00 0.00 3.32
195 196 5.027460 TCACCTTAGTAATAGAGCCCACAA 58.973 41.667 0.00 0.00 0.00 3.33
196 197 4.616553 TCACCTTAGTAATAGAGCCCACA 58.383 43.478 0.00 0.00 0.00 4.17
197 198 5.609533 TTCACCTTAGTAATAGAGCCCAC 57.390 43.478 0.00 0.00 0.00 4.61
198 199 6.824958 ATTTCACCTTAGTAATAGAGCCCA 57.175 37.500 0.00 0.00 0.00 5.36
199 200 7.773690 TGAAATTTCACCTTAGTAATAGAGCCC 59.226 37.037 16.91 0.00 31.01 5.19
200 201 8.732746 TGAAATTTCACCTTAGTAATAGAGCC 57.267 34.615 16.91 0.00 31.01 4.70
221 222 6.582677 ACAACGGGTGAATTTCATATGAAA 57.417 33.333 28.27 28.27 46.60 2.69
222 223 7.689446 TTACAACGGGTGAATTTCATATGAA 57.311 32.000 14.23 14.23 0.00 2.57
223 224 7.689446 TTTACAACGGGTGAATTTCATATGA 57.311 32.000 0.00 0.00 0.00 2.15
224 225 8.240682 TCTTTTACAACGGGTGAATTTCATATG 58.759 33.333 0.00 0.00 0.00 1.78
225 226 8.241367 GTCTTTTACAACGGGTGAATTTCATAT 58.759 33.333 0.00 0.00 0.00 1.78
226 227 7.228906 TGTCTTTTACAACGGGTGAATTTCATA 59.771 33.333 0.00 0.00 34.29 2.15
227 228 6.039941 TGTCTTTTACAACGGGTGAATTTCAT 59.960 34.615 0.00 0.00 34.29 2.57
228 229 5.357314 TGTCTTTTACAACGGGTGAATTTCA 59.643 36.000 0.00 0.00 34.29 2.69
229 230 5.823353 TGTCTTTTACAACGGGTGAATTTC 58.177 37.500 0.00 0.00 34.29 2.17
230 231 5.838531 TGTCTTTTACAACGGGTGAATTT 57.161 34.783 0.00 0.00 34.29 1.82
231 232 5.838531 TTGTCTTTTACAACGGGTGAATT 57.161 34.783 0.00 0.00 43.22 2.17
241 242 7.118496 ACCATGGATTTGTTGTCTTTTACAA 57.882 32.000 21.47 0.00 45.90 2.41
242 243 6.723298 ACCATGGATTTGTTGTCTTTTACA 57.277 33.333 21.47 0.00 35.88 2.41
243 244 7.406799 CAACCATGGATTTGTTGTCTTTTAC 57.593 36.000 21.47 0.00 35.72 2.01
251 252 4.279169 ACTCTGACAACCATGGATTTGTTG 59.721 41.667 21.47 14.50 43.76 3.33
252 253 4.473444 ACTCTGACAACCATGGATTTGTT 58.527 39.130 21.47 0.00 36.06 2.83
253 254 4.104383 ACTCTGACAACCATGGATTTGT 57.896 40.909 21.47 19.44 38.67 2.83
254 255 4.396166 GGTACTCTGACAACCATGGATTTG 59.604 45.833 21.47 16.06 33.28 2.32
255 256 4.042809 TGGTACTCTGACAACCATGGATTT 59.957 41.667 21.47 0.00 38.36 2.17
256 257 3.587061 TGGTACTCTGACAACCATGGATT 59.413 43.478 21.47 6.23 38.36 3.01
257 258 3.181329 TGGTACTCTGACAACCATGGAT 58.819 45.455 21.47 2.68 38.36 3.41
258 259 2.615391 TGGTACTCTGACAACCATGGA 58.385 47.619 21.47 0.00 38.36 3.41
259 260 3.244561 ACTTGGTACTCTGACAACCATGG 60.245 47.826 11.19 11.19 42.65 3.66
260 261 4.008074 ACTTGGTACTCTGACAACCATG 57.992 45.455 13.68 13.68 42.65 3.66
261 262 5.542635 TCTTACTTGGTACTCTGACAACCAT 59.457 40.000 7.08 0.00 42.65 3.55
262 263 4.897076 TCTTACTTGGTACTCTGACAACCA 59.103 41.667 2.93 2.93 41.47 3.67
263 264 5.464030 TCTTACTTGGTACTCTGACAACC 57.536 43.478 0.00 0.00 0.00 3.77
264 265 6.590677 GGAATCTTACTTGGTACTCTGACAAC 59.409 42.308 0.00 0.00 0.00 3.32
265 266 6.497259 AGGAATCTTACTTGGTACTCTGACAA 59.503 38.462 0.00 0.00 0.00 3.18
266 267 6.017192 AGGAATCTTACTTGGTACTCTGACA 58.983 40.000 0.00 0.00 0.00 3.58
267 268 6.406065 GGAGGAATCTTACTTGGTACTCTGAC 60.406 46.154 0.00 0.00 0.00 3.51
268 269 5.657302 GGAGGAATCTTACTTGGTACTCTGA 59.343 44.000 0.00 0.00 0.00 3.27
269 270 5.422331 TGGAGGAATCTTACTTGGTACTCTG 59.578 44.000 0.00 0.00 0.00 3.35
270 271 5.590818 TGGAGGAATCTTACTTGGTACTCT 58.409 41.667 0.00 0.00 0.00 3.24
271 272 5.163395 CCTGGAGGAATCTTACTTGGTACTC 60.163 48.000 0.00 0.00 37.39 2.59
272 273 4.717280 CCTGGAGGAATCTTACTTGGTACT 59.283 45.833 0.00 0.00 37.39 2.73
273 274 4.683671 GCCTGGAGGAATCTTACTTGGTAC 60.684 50.000 0.00 0.00 37.39 3.34
274 275 3.454812 GCCTGGAGGAATCTTACTTGGTA 59.545 47.826 0.00 0.00 37.39 3.25
275 276 2.239907 GCCTGGAGGAATCTTACTTGGT 59.760 50.000 0.00 0.00 37.39 3.67
276 277 2.422093 GGCCTGGAGGAATCTTACTTGG 60.422 54.545 0.00 0.00 37.39 3.61
277 278 2.507471 AGGCCTGGAGGAATCTTACTTG 59.493 50.000 3.11 0.00 37.39 3.16
278 279 2.507471 CAGGCCTGGAGGAATCTTACTT 59.493 50.000 26.14 0.00 37.39 2.24
279 280 2.122768 CAGGCCTGGAGGAATCTTACT 58.877 52.381 26.14 0.00 37.39 2.24
280 281 1.840635 ACAGGCCTGGAGGAATCTTAC 59.159 52.381 35.42 0.00 37.39 2.34
281 282 2.270434 ACAGGCCTGGAGGAATCTTA 57.730 50.000 35.42 0.00 37.39 2.10
282 283 1.376649 AACAGGCCTGGAGGAATCTT 58.623 50.000 35.42 15.93 37.39 2.40
283 284 1.376649 AAACAGGCCTGGAGGAATCT 58.623 50.000 35.42 10.21 37.39 2.40
284 285 2.222227 AAAACAGGCCTGGAGGAATC 57.778 50.000 35.42 0.00 37.39 2.52
285 286 3.825908 TTAAAACAGGCCTGGAGGAAT 57.174 42.857 35.42 17.41 37.39 3.01
286 287 3.603965 TTTAAAACAGGCCTGGAGGAA 57.396 42.857 35.42 20.71 37.39 3.36
287 288 3.825908 ATTTAAAACAGGCCTGGAGGA 57.174 42.857 35.42 16.02 37.39 3.71
288 289 5.422012 ACATTATTTAAAACAGGCCTGGAGG 59.578 40.000 35.42 12.27 38.53 4.30
289 290 6.152661 TGACATTATTTAAAACAGGCCTGGAG 59.847 38.462 35.42 12.68 34.19 3.86
290 291 6.013379 TGACATTATTTAAAACAGGCCTGGA 58.987 36.000 35.42 15.65 34.19 3.86
291 292 6.279513 TGACATTATTTAAAACAGGCCTGG 57.720 37.500 35.42 18.18 34.19 4.45
292 293 7.276218 CACATGACATTATTTAAAACAGGCCTG 59.724 37.037 31.60 31.60 0.00 4.85
293 294 7.178274 TCACATGACATTATTTAAAACAGGCCT 59.822 33.333 0.00 0.00 0.00 5.19
294 295 7.319646 TCACATGACATTATTTAAAACAGGCC 58.680 34.615 0.00 0.00 0.00 5.19
295 296 8.755696 TTCACATGACATTATTTAAAACAGGC 57.244 30.769 0.00 0.00 0.00 4.85
296 297 9.912634 ACTTCACATGACATTATTTAAAACAGG 57.087 29.630 0.00 0.00 0.00 4.00
301 302 9.430623 TCTCGACTTCACATGACATTATTTAAA 57.569 29.630 0.00 0.00 0.00 1.52
312 313 3.057245 CCTTGACTCTCGACTTCACATGA 60.057 47.826 0.00 0.00 0.00 3.07
336 337 2.118679 TCCCTGTGTATGTCCTGGATG 58.881 52.381 0.00 0.00 0.00 3.51
353 354 5.267587 TGAGGTAGGTAAACTAGACTTCCC 58.732 45.833 0.00 0.00 30.77 3.97
359 360 8.262933 GGCTATTTTTGAGGTAGGTAAACTAGA 58.737 37.037 0.00 0.00 30.77 2.43
378 379 2.903784 GGGTTGGTCTTTTGGGCTATTT 59.096 45.455 0.00 0.00 0.00 1.40
417 418 7.548780 ACTTGGCTAAATATAAAAACGTCGGTA 59.451 33.333 0.00 0.00 0.00 4.02
432 433 3.323691 GGGTCCAACAAACTTGGCTAAAT 59.676 43.478 0.00 0.00 39.38 1.40
480 481 1.594293 ACCAGCACGAGTTTCCACG 60.594 57.895 0.00 0.00 0.00 4.94
565 566 5.189928 TGTTTGTGACTACATGGTGTCTTT 58.810 37.500 17.22 0.00 36.53 2.52
671 672 8.197592 TCTACCATACCAGAAGTCAAAGTTTA 57.802 34.615 0.00 0.00 0.00 2.01
704 705 9.857656 ACATATATTTCCTCAAATGTCACATCT 57.142 29.630 0.00 0.00 33.95 2.90
873 874 6.015519 ACCAGCTCTAGATCACAGATGTTATC 60.016 42.308 0.00 0.00 0.00 1.75
875 876 5.204292 ACCAGCTCTAGATCACAGATGTTA 58.796 41.667 0.00 0.00 0.00 2.41
881 882 4.462508 TTTGACCAGCTCTAGATCACAG 57.537 45.455 0.00 0.00 0.00 3.66
987 989 3.507622 CCTTCACCATGTTTTCTCCCTTC 59.492 47.826 0.00 0.00 0.00 3.46
1204 1209 3.877559 TCAGCCCAATTGTGTAGATGAG 58.122 45.455 4.43 0.00 0.00 2.90
1521 1526 3.817084 CCATATATGCTGTCACAAGTGGG 59.183 47.826 7.24 0.00 0.00 4.61
1551 1556 2.777692 CCCCTCCTTAGAAATACCAGCA 59.222 50.000 0.00 0.00 0.00 4.41
1562 1567 0.832559 GGTCGGATCCCCCTCCTTAG 60.833 65.000 6.06 0.00 32.77 2.18
1929 1934 2.259917 TCTCTGCTGAATGTTCCCTCA 58.740 47.619 0.00 0.00 0.00 3.86
1984 1989 2.097825 AGGCAAATCTCCACTGAATGC 58.902 47.619 0.00 0.00 34.34 3.56
1992 1997 1.702182 TTTGTGCAGGCAAATCTCCA 58.298 45.000 0.00 0.00 33.91 3.86
1993 1998 3.696051 TCTATTTGTGCAGGCAAATCTCC 59.304 43.478 16.11 0.00 44.85 3.71
2020 2032 3.940221 GCAATTCTGAATGCTCTCTCAGT 59.060 43.478 3.22 0.00 40.06 3.41
2073 2085 6.039415 AGGATGGGGTATCTAGTGTAGAAA 57.961 41.667 0.00 0.00 38.50 2.52
2232 2244 4.529109 TGTGATGATCAGGTCAACGTTA 57.471 40.909 0.00 0.00 40.97 3.18
2341 2353 1.189403 GTCCTCGAAGTGTATTCGCG 58.811 55.000 0.00 0.00 41.30 5.87
3027 3039 0.682532 TGCTTTGCAGGGTGTCACAA 60.683 50.000 5.12 0.00 33.32 3.33
3089 3104 5.714806 TGGGTCCTTAATCTGTCCATTTTTC 59.285 40.000 0.00 0.00 0.00 2.29
3255 3282 1.973138 CAAGGCATTTCTTGTGAGCG 58.027 50.000 0.00 0.00 39.27 5.03
3409 3436 1.526575 GGTTCATGTGGTGCTGGTGG 61.527 60.000 0.00 0.00 0.00 4.61
3812 3863 7.889873 TTGTTTCCTTTTCAAAGAGGACATA 57.110 32.000 1.68 0.00 41.61 2.29
3863 3914 9.569122 GCTAATTCCCAACATAAGGATAGTTAA 57.431 33.333 0.00 0.00 30.55 2.01
3864 3915 8.719596 TGCTAATTCCCAACATAAGGATAGTTA 58.280 33.333 0.00 0.00 30.55 2.24
3865 3916 7.502561 GTGCTAATTCCCAACATAAGGATAGTT 59.497 37.037 0.00 0.00 30.55 2.24
3866 3917 6.998673 GTGCTAATTCCCAACATAAGGATAGT 59.001 38.462 0.00 0.00 30.55 2.12
3867 3918 6.998074 TGTGCTAATTCCCAACATAAGGATAG 59.002 38.462 0.00 0.00 30.55 2.08
3868 3919 6.770785 GTGTGCTAATTCCCAACATAAGGATA 59.229 38.462 0.00 0.00 30.55 2.59
3869 3920 5.594317 GTGTGCTAATTCCCAACATAAGGAT 59.406 40.000 0.00 0.00 30.55 3.24
3870 3921 4.947388 GTGTGCTAATTCCCAACATAAGGA 59.053 41.667 0.00 0.00 0.00 3.36
3871 3922 4.704540 TGTGTGCTAATTCCCAACATAAGG 59.295 41.667 0.00 0.00 0.00 2.69
3872 3923 5.895636 TGTGTGCTAATTCCCAACATAAG 57.104 39.130 0.00 0.00 0.00 1.73
3873 3924 6.656632 TTTGTGTGCTAATTCCCAACATAA 57.343 33.333 0.00 0.00 0.00 1.90
3874 3925 6.849085 ATTTGTGTGCTAATTCCCAACATA 57.151 33.333 0.00 0.00 0.00 2.29
3875 3926 5.743636 ATTTGTGTGCTAATTCCCAACAT 57.256 34.783 0.00 0.00 0.00 2.71
4013 4064 4.144297 TGCTGAGTAACATTTTCTGCCTT 58.856 39.130 0.00 0.00 35.66 4.35
4339 4392 3.971305 TCCACTACCTTGTCTCCTTCAAA 59.029 43.478 0.00 0.00 0.00 2.69
4589 4642 1.072266 TTTAGGCAGCCCAAAGAGGA 58.928 50.000 8.22 0.00 41.22 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.