Multiple sequence alignment - TraesCS1D01G407100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G407100 chr1D 100.000 2098 0 0 1 2098 470340570 470338473 0.000000e+00 3875.0
1 TraesCS1D01G407100 chr1D 84.551 1424 110 67 500 1886 470312498 470311148 0.000000e+00 1310.0
2 TraesCS1D01G407100 chr1D 100.000 505 0 0 2369 2873 470338202 470337698 0.000000e+00 933.0
3 TraesCS1D01G407100 chr1A 90.939 1545 99 24 475 1990 564041382 564039850 0.000000e+00 2039.0
4 TraesCS1D01G407100 chr1A 89.784 509 37 4 1375 1871 563989677 563989172 3.120000e-179 638.0
5 TraesCS1D01G407100 chr1A 80.607 428 42 18 46 459 564041766 564041366 2.800000e-75 292.0
6 TraesCS1D01G407100 chr1B 91.385 1393 92 11 621 1990 653040207 653038820 0.000000e+00 1882.0
7 TraesCS1D01G407100 chr1B 87.629 873 79 22 1025 1886 652925841 652924987 0.000000e+00 987.0
8 TraesCS1D01G407100 chr1B 82.692 416 24 20 540 933 652926288 652925899 2.760000e-85 326.0
9 TraesCS1D01G407100 chrUn 83.810 210 22 6 1623 1829 256113095 256112895 3.780000e-44 189.0
10 TraesCS1D01G407100 chr5B 83.810 210 22 6 1623 1829 660881911 660882111 3.780000e-44 189.0
11 TraesCS1D01G407100 chr5B 83.810 210 22 6 1623 1829 660927860 660928060 3.780000e-44 189.0
12 TraesCS1D01G407100 chr6B 90.840 131 5 1 492 615 502022130 502022000 4.920000e-38 169.0
13 TraesCS1D01G407100 chr7B 89.076 119 6 1 492 603 710079310 710079192 1.070000e-29 141.0
14 TraesCS1D01G407100 chr2D 78.804 184 33 6 1354 1534 14437546 14437726 5.030000e-23 119.0
15 TraesCS1D01G407100 chr3B 87.500 56 7 0 157 212 765327318 765327373 6.640000e-07 65.8
16 TraesCS1D01G407100 chr3B 92.683 41 3 0 172 212 11906831 11906791 3.090000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G407100 chr1D 470337698 470340570 2872 True 2404.0 3875 100.0000 1 2873 2 chr1D.!!$R2 2872
1 TraesCS1D01G407100 chr1D 470311148 470312498 1350 True 1310.0 1310 84.5510 500 1886 1 chr1D.!!$R1 1386
2 TraesCS1D01G407100 chr1A 564039850 564041766 1916 True 1165.5 2039 85.7730 46 1990 2 chr1A.!!$R2 1944
3 TraesCS1D01G407100 chr1A 563989172 563989677 505 True 638.0 638 89.7840 1375 1871 1 chr1A.!!$R1 496
4 TraesCS1D01G407100 chr1B 653038820 653040207 1387 True 1882.0 1882 91.3850 621 1990 1 chr1B.!!$R1 1369
5 TraesCS1D01G407100 chr1B 652924987 652926288 1301 True 656.5 987 85.1605 540 1886 2 chr1B.!!$R2 1346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 336 0.801872 TCATGACGAACCAAATGGCG 59.198 50.000 0.00 0.0 39.32 5.69 F
331 338 1.068610 CATGACGAACCAAATGGCGTT 60.069 47.619 6.57 0.0 39.32 4.84 F
1712 1835 0.895530 AGAAATGGAAGCTCCGACGA 59.104 50.000 0.00 0.0 40.17 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1235 0.179000 GGCCTGATCCACGACAGATT 59.821 55.0 0.0 0.0 36.38 2.40 R
1817 1943 0.329596 ACTGCCAATCTCCTCCAACC 59.670 55.0 0.0 0.0 0.00 3.77 R
2590 2719 0.108424 CTTCTTCCTCCTGTCGGCTG 60.108 60.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.656040 AAATCAACATAATTAAGCTGCAATTGA 57.344 25.926 10.34 6.73 0.00 2.57
27 28 9.656040 AATCAACATAATTAAGCTGCAATTGAA 57.344 25.926 10.34 0.00 0.00 2.69
28 29 9.656040 ATCAACATAATTAAGCTGCAATTGAAA 57.344 25.926 10.34 0.00 0.00 2.69
29 30 9.142515 TCAACATAATTAAGCTGCAATTGAAAG 57.857 29.630 10.34 6.92 0.00 2.62
30 31 9.142515 CAACATAATTAAGCTGCAATTGAAAGA 57.857 29.630 10.34 0.00 0.00 2.52
31 32 8.922058 ACATAATTAAGCTGCAATTGAAAGAG 57.078 30.769 10.34 0.00 0.00 2.85
32 33 7.977853 ACATAATTAAGCTGCAATTGAAAGAGG 59.022 33.333 10.34 0.00 0.00 3.69
33 34 5.990120 ATTAAGCTGCAATTGAAAGAGGT 57.010 34.783 10.34 1.54 0.00 3.85
34 35 3.930634 AAGCTGCAATTGAAAGAGGTC 57.069 42.857 10.34 0.00 0.00 3.85
35 36 3.151912 AGCTGCAATTGAAAGAGGTCT 57.848 42.857 10.34 0.00 0.00 3.85
36 37 4.292186 AGCTGCAATTGAAAGAGGTCTA 57.708 40.909 10.34 0.00 0.00 2.59
37 38 4.853007 AGCTGCAATTGAAAGAGGTCTAT 58.147 39.130 10.34 0.00 0.00 1.98
38 39 5.259632 AGCTGCAATTGAAAGAGGTCTATT 58.740 37.500 10.34 0.00 0.00 1.73
39 40 5.125097 AGCTGCAATTGAAAGAGGTCTATTG 59.875 40.000 10.34 5.39 41.08 1.90
40 41 5.124457 GCTGCAATTGAAAGAGGTCTATTGA 59.876 40.000 10.34 0.32 40.80 2.57
41 42 6.349611 GCTGCAATTGAAAGAGGTCTATTGAA 60.350 38.462 10.34 2.78 40.80 2.69
42 43 7.523293 TGCAATTGAAAGAGGTCTATTGAAA 57.477 32.000 10.34 0.00 40.80 2.69
43 44 7.950512 TGCAATTGAAAGAGGTCTATTGAAAA 58.049 30.769 10.34 0.00 40.80 2.29
44 45 8.587608 TGCAATTGAAAGAGGTCTATTGAAAAT 58.412 29.630 10.34 0.00 40.80 1.82
57 58 8.493547 GGTCTATTGAAAATACCAAGTATACGC 58.506 37.037 0.00 0.00 0.00 4.42
71 72 7.226720 ACCAAGTATACGCAAATCCTTATCTTG 59.773 37.037 0.00 0.00 0.00 3.02
72 73 6.787085 AGTATACGCAAATCCTTATCTTGC 57.213 37.500 0.00 0.00 41.60 4.01
80 81 6.974622 CGCAAATCCTTATCTTGCTACAAAAT 59.025 34.615 4.69 0.00 42.60 1.82
82 83 9.237846 GCAAATCCTTATCTTGCTACAAAATAC 57.762 33.333 0.00 0.00 41.74 1.89
144 145 7.673926 ACTCCCTTTGTTCCACAATACATAAAT 59.326 33.333 0.00 0.00 38.00 1.40
145 146 9.184523 CTCCCTTTGTTCCACAATACATAAATA 57.815 33.333 0.00 0.00 38.00 1.40
146 147 9.707957 TCCCTTTGTTCCACAATACATAAATAT 57.292 29.630 0.00 0.00 38.00 1.28
234 237 8.780846 ATTGATGTCCACAATACTAAACGTAA 57.219 30.769 0.00 0.00 36.40 3.18
236 239 8.780846 TGATGTCCACAATACTAAACGTAAAT 57.219 30.769 0.00 0.00 0.00 1.40
237 240 8.875803 TGATGTCCACAATACTAAACGTAAATC 58.124 33.333 0.00 0.00 0.00 2.17
238 241 8.780846 ATGTCCACAATACTAAACGTAAATCA 57.219 30.769 0.00 0.00 0.00 2.57
240 243 9.053840 TGTCCACAATACTAAACGTAAATCAAA 57.946 29.630 0.00 0.00 0.00 2.69
289 296 8.055279 ACAGTGGTATTGATTTTGTATTCTGG 57.945 34.615 0.00 0.00 0.00 3.86
290 297 7.888021 ACAGTGGTATTGATTTTGTATTCTGGA 59.112 33.333 0.00 0.00 0.00 3.86
291 298 8.739039 CAGTGGTATTGATTTTGTATTCTGGAA 58.261 33.333 0.00 0.00 0.00 3.53
292 299 9.308000 AGTGGTATTGATTTTGTATTCTGGAAA 57.692 29.630 0.00 0.00 0.00 3.13
329 336 0.801872 TCATGACGAACCAAATGGCG 59.198 50.000 0.00 0.00 39.32 5.69
331 338 1.068610 CATGACGAACCAAATGGCGTT 60.069 47.619 6.57 0.00 39.32 4.84
392 404 8.902540 ATGACTTCCAAAATATCTAATACGCA 57.097 30.769 0.00 0.00 0.00 5.24
393 405 8.138365 TGACTTCCAAAATATCTAATACGCAC 57.862 34.615 0.00 0.00 0.00 5.34
396 408 9.998106 ACTTCCAAAATATCTAATACGCACTAT 57.002 29.630 0.00 0.00 0.00 2.12
398 410 8.251750 TCCAAAATATCTAATACGCACTATGC 57.748 34.615 0.00 0.00 40.69 3.14
399 411 7.333423 TCCAAAATATCTAATACGCACTATGCC 59.667 37.037 0.00 0.00 41.12 4.40
400 412 7.334421 CCAAAATATCTAATACGCACTATGCCT 59.666 37.037 0.00 0.00 41.12 4.75
432 444 6.795144 TGGCAAATGAAAATACCAGATGAT 57.205 33.333 0.00 0.00 0.00 2.45
433 445 6.808829 TGGCAAATGAAAATACCAGATGATC 58.191 36.000 0.00 0.00 0.00 2.92
434 446 5.916883 GGCAAATGAAAATACCAGATGATCG 59.083 40.000 0.00 0.00 0.00 3.69
438 450 8.347771 CAAATGAAAATACCAGATGATCGACAT 58.652 33.333 0.00 0.00 42.47 3.06
439 451 9.559732 AAATGAAAATACCAGATGATCGACATA 57.440 29.630 0.00 0.00 39.56 2.29
440 452 9.730705 AATGAAAATACCAGATGATCGACATAT 57.269 29.630 0.00 0.00 39.56 1.78
449 461 9.688091 ACCAGATGATCGACATATATACTAGTT 57.312 33.333 0.00 0.00 39.56 2.24
455 467 8.459635 TGATCGACATATATACTAGTTTCAGGC 58.540 37.037 0.00 0.00 0.00 4.85
456 468 7.997773 TCGACATATATACTAGTTTCAGGCT 57.002 36.000 0.00 0.00 0.00 4.58
457 469 8.405418 TCGACATATATACTAGTTTCAGGCTT 57.595 34.615 0.00 0.00 0.00 4.35
458 470 8.857098 TCGACATATATACTAGTTTCAGGCTTT 58.143 33.333 0.00 0.00 0.00 3.51
459 471 9.477484 CGACATATATACTAGTTTCAGGCTTTT 57.523 33.333 0.00 0.00 0.00 2.27
486 498 6.262273 TGGTTTTGAAAGCTACTAGTTTCAGG 59.738 38.462 0.00 0.00 42.19 3.86
532 545 2.250939 CGCAAGTCAAACCTGCCGA 61.251 57.895 0.00 0.00 0.00 5.54
757 803 2.519002 TGCATGCGCTTAAGTTTACG 57.481 45.000 14.09 0.01 39.64 3.18
808 858 2.801342 GCTATGGCTTCCTTCTCGTCAG 60.801 54.545 0.00 0.00 35.22 3.51
840 890 1.287815 CTTCACAGTACGGCCACGA 59.712 57.895 2.24 0.00 44.60 4.35
845 895 1.226974 CAGTACGGCCACGATCTGG 60.227 63.158 2.24 6.79 44.60 3.86
1141 1240 2.622629 CGACGGCATCGCAATCTG 59.377 61.111 0.00 0.00 45.52 2.90
1313 1415 3.077556 TCGAGGAGAAGGCCAGCC 61.078 66.667 5.01 0.00 0.00 4.85
1362 1467 2.301738 GCCCAAGAGCTACAGGGGT 61.302 63.158 16.22 0.00 41.75 4.95
1401 1506 2.100631 CAAGTTCGCGGCGGAGATT 61.101 57.895 23.46 8.92 0.00 2.40
1689 1803 2.125512 GCTGATCTCACGGCGGTT 60.126 61.111 13.24 0.00 32.46 4.44
1693 1807 2.545113 GCTGATCTCACGGCGGTTTATA 60.545 50.000 13.24 0.00 32.46 0.98
1710 1833 5.236695 GGTTTATAGAAATGGAAGCTCCGAC 59.763 44.000 0.00 0.00 40.17 4.79
1711 1834 2.579207 TAGAAATGGAAGCTCCGACG 57.421 50.000 0.00 0.00 40.17 5.12
1712 1835 0.895530 AGAAATGGAAGCTCCGACGA 59.104 50.000 0.00 0.00 40.17 4.20
1737 1860 1.078848 GGTGTCATTCGCCAGCTCT 60.079 57.895 0.00 0.00 45.32 4.09
1817 1943 1.202348 AGCTGTGAATCGAGTGATCGG 60.202 52.381 0.00 0.00 32.24 4.18
1836 1962 0.329596 GGTTGGAGGAGATTGGCAGT 59.670 55.000 0.00 0.00 0.00 4.40
1861 1987 1.946984 TTGGGACTATCTGTTCCCGT 58.053 50.000 2.26 0.00 43.96 5.28
1865 1991 2.376109 GGACTATCTGTTCCCGTCTCA 58.624 52.381 0.00 0.00 0.00 3.27
1906 2034 4.471904 TGGTGGTGATGATCAAGTAGTC 57.528 45.455 0.00 0.00 0.00 2.59
1982 2111 6.840090 TTTGGGTATGGATGATAGGAGAAA 57.160 37.500 0.00 0.00 0.00 2.52
1987 2116 5.936956 GGTATGGATGATAGGAGAAAAGCAG 59.063 44.000 0.00 0.00 0.00 4.24
1988 2117 5.643421 ATGGATGATAGGAGAAAAGCAGT 57.357 39.130 0.00 0.00 0.00 4.40
1991 2120 6.248433 TGGATGATAGGAGAAAAGCAGTTTT 58.752 36.000 0.00 0.00 38.65 2.43
1992 2121 6.151648 TGGATGATAGGAGAAAAGCAGTTTTG 59.848 38.462 0.00 0.00 35.94 2.44
1993 2122 5.964958 TGATAGGAGAAAAGCAGTTTTGG 57.035 39.130 0.00 0.00 35.94 3.28
1994 2123 5.385198 TGATAGGAGAAAAGCAGTTTTGGT 58.615 37.500 0.00 0.00 35.94 3.67
1995 2124 5.833131 TGATAGGAGAAAAGCAGTTTTGGTT 59.167 36.000 0.00 0.00 46.37 3.67
1996 2125 7.001674 TGATAGGAGAAAAGCAGTTTTGGTTA 58.998 34.615 0.00 0.00 43.81 2.85
1997 2126 5.515797 AGGAGAAAAGCAGTTTTGGTTAC 57.484 39.130 0.00 0.00 43.81 2.50
1998 2127 5.201243 AGGAGAAAAGCAGTTTTGGTTACT 58.799 37.500 0.00 0.00 43.81 2.24
1999 2128 5.656859 AGGAGAAAAGCAGTTTTGGTTACTT 59.343 36.000 0.00 0.00 43.81 2.24
2000 2129 5.748630 GGAGAAAAGCAGTTTTGGTTACTTG 59.251 40.000 0.00 0.00 43.81 3.16
2001 2130 6.280855 AGAAAAGCAGTTTTGGTTACTTGT 57.719 33.333 0.00 0.00 43.81 3.16
2002 2131 7.399245 AGAAAAGCAGTTTTGGTTACTTGTA 57.601 32.000 0.00 0.00 43.81 2.41
2003 2132 8.007405 AGAAAAGCAGTTTTGGTTACTTGTAT 57.993 30.769 0.00 0.00 43.81 2.29
2004 2133 8.474831 AGAAAAGCAGTTTTGGTTACTTGTATT 58.525 29.630 0.00 0.00 43.81 1.89
2005 2134 8.419076 AAAAGCAGTTTTGGTTACTTGTATTG 57.581 30.769 0.00 0.00 43.81 1.90
2006 2135 6.709018 AGCAGTTTTGGTTACTTGTATTGT 57.291 33.333 0.00 0.00 0.00 2.71
2007 2136 7.811117 AGCAGTTTTGGTTACTTGTATTGTA 57.189 32.000 0.00 0.00 0.00 2.41
2008 2137 8.404107 AGCAGTTTTGGTTACTTGTATTGTAT 57.596 30.769 0.00 0.00 0.00 2.29
2009 2138 8.296713 AGCAGTTTTGGTTACTTGTATTGTATG 58.703 33.333 0.00 0.00 0.00 2.39
2010 2139 7.061789 GCAGTTTTGGTTACTTGTATTGTATGC 59.938 37.037 0.00 0.00 0.00 3.14
2011 2140 8.079203 CAGTTTTGGTTACTTGTATTGTATGCA 58.921 33.333 0.00 0.00 0.00 3.96
2012 2141 8.079809 AGTTTTGGTTACTTGTATTGTATGCAC 58.920 33.333 0.00 0.00 0.00 4.57
2013 2142 7.753309 TTTGGTTACTTGTATTGTATGCACT 57.247 32.000 0.00 0.00 0.00 4.40
2014 2143 8.850007 TTTGGTTACTTGTATTGTATGCACTA 57.150 30.769 0.00 0.00 0.00 2.74
2015 2144 8.850007 TTGGTTACTTGTATTGTATGCACTAA 57.150 30.769 0.00 0.00 0.00 2.24
2016 2145 8.850007 TGGTTACTTGTATTGTATGCACTAAA 57.150 30.769 0.00 0.00 0.00 1.85
2017 2146 8.941977 TGGTTACTTGTATTGTATGCACTAAAG 58.058 33.333 0.00 0.00 0.00 1.85
2018 2147 9.158233 GGTTACTTGTATTGTATGCACTAAAGA 57.842 33.333 0.00 0.00 0.00 2.52
2022 2151 9.884636 ACTTGTATTGTATGCACTAAAGATACA 57.115 29.630 0.00 0.00 32.08 2.29
2030 2159 9.394767 TGTATGCACTAAAGATACATTGATTGT 57.605 29.630 0.00 0.00 42.62 2.71
2059 2188 9.559732 AGTACTTGATTAGCAAATGTATATGCA 57.440 29.630 0.00 0.00 44.95 3.96
2062 2191 9.903682 ACTTGATTAGCAAATGTATATGCAATC 57.096 29.630 0.00 7.83 44.95 2.67
2063 2192 9.902196 CTTGATTAGCAAATGTATATGCAATCA 57.098 29.630 15.15 15.15 44.95 2.57
2064 2193 9.902196 TTGATTAGCAAATGTATATGCAATCAG 57.098 29.630 16.87 0.00 43.02 2.90
2065 2194 8.517056 TGATTAGCAAATGTATATGCAATCAGG 58.483 33.333 15.15 0.00 44.95 3.86
2066 2195 7.822161 TTAGCAAATGTATATGCAATCAGGT 57.178 32.000 0.00 0.00 44.95 4.00
2067 2196 6.720112 AGCAAATGTATATGCAATCAGGTT 57.280 33.333 0.00 0.00 44.95 3.50
2068 2197 7.822161 AGCAAATGTATATGCAATCAGGTTA 57.178 32.000 0.00 0.00 44.95 2.85
2069 2198 7.879070 AGCAAATGTATATGCAATCAGGTTAG 58.121 34.615 0.00 0.00 44.95 2.34
2070 2199 6.583806 GCAAATGTATATGCAATCAGGTTAGC 59.416 38.462 0.00 0.00 42.12 3.09
2071 2200 7.522725 GCAAATGTATATGCAATCAGGTTAGCT 60.523 37.037 0.00 0.00 42.12 3.32
2072 2201 7.444629 AATGTATATGCAATCAGGTTAGCTG 57.555 36.000 4.89 4.89 0.00 4.24
2073 2202 4.756642 TGTATATGCAATCAGGTTAGCTGC 59.243 41.667 6.54 0.00 0.00 5.25
2074 2203 2.133281 ATGCAATCAGGTTAGCTGCA 57.867 45.000 6.54 2.47 46.20 4.41
2075 2204 2.133281 TGCAATCAGGTTAGCTGCAT 57.867 45.000 6.54 0.00 38.06 3.96
2076 2205 2.019249 TGCAATCAGGTTAGCTGCATC 58.981 47.619 6.54 0.00 38.06 3.91
2077 2206 1.003116 GCAATCAGGTTAGCTGCATCG 60.003 52.381 6.54 0.00 33.19 3.84
2078 2207 1.003116 CAATCAGGTTAGCTGCATCGC 60.003 52.381 6.54 0.00 0.00 4.58
2079 2208 0.877649 ATCAGGTTAGCTGCATCGCG 60.878 55.000 6.54 0.00 34.40 5.87
2080 2209 1.811266 CAGGTTAGCTGCATCGCGT 60.811 57.895 5.77 0.00 34.40 6.01
2081 2210 1.811266 AGGTTAGCTGCATCGCGTG 60.811 57.895 5.77 5.06 34.40 5.34
2082 2211 2.703409 GTTAGCTGCATCGCGTGG 59.297 61.111 5.77 0.00 34.40 4.94
2083 2212 1.809619 GTTAGCTGCATCGCGTGGA 60.810 57.895 5.77 4.25 34.40 4.02
2084 2213 1.079474 TTAGCTGCATCGCGTGGAA 60.079 52.632 5.77 0.00 34.40 3.53
2085 2214 0.672091 TTAGCTGCATCGCGTGGAAA 60.672 50.000 5.77 0.00 34.40 3.13
2086 2215 0.672091 TAGCTGCATCGCGTGGAAAA 60.672 50.000 5.77 0.00 34.40 2.29
2087 2216 1.797537 GCTGCATCGCGTGGAAAAC 60.798 57.895 5.77 0.00 0.00 2.43
2399 2528 2.951458 CGGGTTCGCAAGGGAAAC 59.049 61.111 6.38 6.38 38.47 2.78
2400 2529 1.599797 CGGGTTCGCAAGGGAAACT 60.600 57.895 13.52 0.00 34.06 2.66
2401 2530 1.170290 CGGGTTCGCAAGGGAAACTT 61.170 55.000 13.52 0.00 41.00 2.66
2410 2539 2.702270 AAGGGAAACTTGGCCTCAAT 57.298 45.000 3.32 0.00 38.21 2.57
2411 2540 1.928868 AGGGAAACTTGGCCTCAATG 58.071 50.000 3.32 0.00 31.75 2.82
2412 2541 1.147817 AGGGAAACTTGGCCTCAATGT 59.852 47.619 3.32 0.00 31.75 2.71
2413 2542 1.546029 GGGAAACTTGGCCTCAATGTC 59.454 52.381 3.32 0.00 31.75 3.06
2414 2543 2.519013 GGAAACTTGGCCTCAATGTCT 58.481 47.619 3.32 0.00 31.75 3.41
2415 2544 3.561313 GGGAAACTTGGCCTCAATGTCTA 60.561 47.826 3.32 0.00 31.75 2.59
2416 2545 4.079253 GGAAACTTGGCCTCAATGTCTAA 58.921 43.478 3.32 0.00 31.75 2.10
2417 2546 4.156739 GGAAACTTGGCCTCAATGTCTAAG 59.843 45.833 3.32 0.00 31.75 2.18
2418 2547 3.356529 ACTTGGCCTCAATGTCTAAGG 57.643 47.619 3.32 0.00 31.75 2.69
2419 2548 2.644798 ACTTGGCCTCAATGTCTAAGGT 59.355 45.455 3.32 0.00 32.49 3.50
2420 2549 2.787473 TGGCCTCAATGTCTAAGGTG 57.213 50.000 3.32 0.00 32.49 4.00
2421 2550 1.985159 TGGCCTCAATGTCTAAGGTGT 59.015 47.619 3.32 0.00 32.49 4.16
2422 2551 2.290260 TGGCCTCAATGTCTAAGGTGTG 60.290 50.000 3.32 0.00 32.49 3.82
2423 2552 1.740025 GCCTCAATGTCTAAGGTGTGC 59.260 52.381 0.00 0.00 32.49 4.57
2424 2553 2.002586 CCTCAATGTCTAAGGTGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
2425 2554 2.002586 CTCAATGTCTAAGGTGTGCGG 58.997 52.381 0.00 0.00 0.00 5.69
2426 2555 1.086696 CAATGTCTAAGGTGTGCGGG 58.913 55.000 0.00 0.00 0.00 6.13
2427 2556 0.035439 AATGTCTAAGGTGTGCGGGG 60.035 55.000 0.00 0.00 0.00 5.73
2428 2557 0.907704 ATGTCTAAGGTGTGCGGGGA 60.908 55.000 0.00 0.00 0.00 4.81
2429 2558 1.218316 GTCTAAGGTGTGCGGGGAG 59.782 63.158 0.00 0.00 0.00 4.30
2430 2559 1.987855 TCTAAGGTGTGCGGGGAGG 60.988 63.158 0.00 0.00 0.00 4.30
2431 2560 3.006728 TAAGGTGTGCGGGGAGGG 61.007 66.667 0.00 0.00 0.00 4.30
2451 2580 2.440247 GGGGGTGCGGAATTGGAG 60.440 66.667 0.00 0.00 0.00 3.86
2452 2581 2.440247 GGGGTGCGGAATTGGAGG 60.440 66.667 0.00 0.00 0.00 4.30
2453 2582 2.355115 GGGTGCGGAATTGGAGGT 59.645 61.111 0.00 0.00 0.00 3.85
2454 2583 1.749258 GGGTGCGGAATTGGAGGTC 60.749 63.158 0.00 0.00 0.00 3.85
2455 2584 2.106683 GGTGCGGAATTGGAGGTCG 61.107 63.158 0.00 0.00 0.00 4.79
2456 2585 2.106683 GTGCGGAATTGGAGGTCGG 61.107 63.158 0.00 0.00 0.00 4.79
2457 2586 3.202706 GCGGAATTGGAGGTCGGC 61.203 66.667 0.00 0.00 33.70 5.54
2458 2587 2.267642 CGGAATTGGAGGTCGGCA 59.732 61.111 0.00 0.00 0.00 5.69
2459 2588 1.815421 CGGAATTGGAGGTCGGCAG 60.815 63.158 0.00 0.00 0.00 4.85
2460 2589 1.452108 GGAATTGGAGGTCGGCAGG 60.452 63.158 0.00 0.00 0.00 4.85
2461 2590 1.452108 GAATTGGAGGTCGGCAGGG 60.452 63.158 0.00 0.00 0.00 4.45
2462 2591 3.645268 AATTGGAGGTCGGCAGGGC 62.645 63.158 0.00 0.00 0.00 5.19
2465 2594 3.081409 GGAGGTCGGCAGGGCTTA 61.081 66.667 0.00 0.00 0.00 3.09
2466 2595 2.501610 GAGGTCGGCAGGGCTTAG 59.498 66.667 0.00 0.00 0.00 2.18
2467 2596 3.741830 GAGGTCGGCAGGGCTTAGC 62.742 68.421 0.00 0.00 0.00 3.09
2468 2597 4.096003 GGTCGGCAGGGCTTAGCA 62.096 66.667 6.53 0.00 0.00 3.49
2469 2598 2.512515 GTCGGCAGGGCTTAGCAG 60.513 66.667 6.53 0.00 0.00 4.24
2470 2599 3.785859 TCGGCAGGGCTTAGCAGG 61.786 66.667 6.53 0.00 0.00 4.85
2471 2600 3.785859 CGGCAGGGCTTAGCAGGA 61.786 66.667 6.53 0.00 0.00 3.86
2472 2601 2.922234 GGCAGGGCTTAGCAGGAT 59.078 61.111 6.53 0.00 0.00 3.24
2473 2602 1.527844 GGCAGGGCTTAGCAGGATG 60.528 63.158 6.53 0.00 40.87 3.51
2474 2603 1.225704 GCAGGGCTTAGCAGGATGT 59.774 57.895 6.53 0.00 39.31 3.06
2475 2604 0.817229 GCAGGGCTTAGCAGGATGTC 60.817 60.000 6.53 0.00 39.31 3.06
2476 2605 0.531532 CAGGGCTTAGCAGGATGTCG 60.532 60.000 6.53 0.00 39.31 4.35
2477 2606 0.978146 AGGGCTTAGCAGGATGTCGT 60.978 55.000 6.53 0.00 39.31 4.34
2478 2607 0.811616 GGGCTTAGCAGGATGTCGTG 60.812 60.000 6.53 0.00 39.31 4.35
2479 2608 0.811616 GGCTTAGCAGGATGTCGTGG 60.812 60.000 6.53 0.00 39.31 4.94
2480 2609 1.432270 GCTTAGCAGGATGTCGTGGC 61.432 60.000 0.00 0.00 39.31 5.01
2481 2610 1.148157 CTTAGCAGGATGTCGTGGCG 61.148 60.000 5.04 0.00 39.31 5.69
2482 2611 3.716539 TAGCAGGATGTCGTGGCGC 62.717 63.158 0.00 0.00 39.31 6.53
2495 2624 4.940593 GGCGCGGCAAAAGCACAA 62.941 61.111 29.32 0.00 34.19 3.33
2496 2625 3.691356 GCGCGGCAAAAGCACAAC 61.691 61.111 8.83 0.00 34.19 3.32
2497 2626 2.278466 CGCGGCAAAAGCACAACA 60.278 55.556 0.00 0.00 34.19 3.33
2498 2627 2.295052 CGCGGCAAAAGCACAACAG 61.295 57.895 0.00 0.00 34.19 3.16
2499 2628 1.226945 GCGGCAAAAGCACAACAGT 60.227 52.632 0.00 0.00 34.19 3.55
2500 2629 1.481819 GCGGCAAAAGCACAACAGTG 61.482 55.000 0.00 0.00 36.35 3.66
2501 2630 0.871163 CGGCAAAAGCACAACAGTGG 60.871 55.000 0.00 0.00 33.85 4.00
2502 2631 0.530431 GGCAAAAGCACAACAGTGGG 60.530 55.000 0.00 0.00 33.85 4.61
2503 2632 0.530431 GCAAAAGCACAACAGTGGGG 60.530 55.000 0.00 0.00 33.85 4.96
2504 2633 0.104671 CAAAAGCACAACAGTGGGGG 59.895 55.000 0.00 0.00 33.85 5.40
2518 2647 2.692741 GGGGGAGGTTGAGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
2519 2648 2.692741 GGGGAGGTTGAGGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
2520 2649 2.692741 GGGAGGTTGAGGGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
2521 2650 2.125225 GGAGGTTGAGGGGAGGGT 59.875 66.667 0.00 0.00 0.00 4.34
2522 2651 2.301738 GGAGGTTGAGGGGAGGGTG 61.302 68.421 0.00 0.00 0.00 4.61
2523 2652 2.204151 AGGTTGAGGGGAGGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
2524 2653 2.204090 GGTTGAGGGGAGGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
2525 2654 2.301738 GGTTGAGGGGAGGGTGGAG 61.302 68.421 0.00 0.00 0.00 3.86
2526 2655 2.610859 TTGAGGGGAGGGTGGAGC 60.611 66.667 0.00 0.00 0.00 4.70
2572 2701 4.275508 CAGGTGGTGGCAGCAGGT 62.276 66.667 21.25 7.29 0.00 4.00
2573 2702 4.275508 AGGTGGTGGCAGCAGGTG 62.276 66.667 21.25 0.00 0.00 4.00
2575 2704 4.586235 GTGGTGGCAGCAGGTGGT 62.586 66.667 21.25 0.00 0.00 4.16
2576 2705 4.269523 TGGTGGCAGCAGGTGGTC 62.270 66.667 16.56 0.00 0.00 4.02
2577 2706 3.958860 GGTGGCAGCAGGTGGTCT 61.959 66.667 12.58 0.00 0.00 3.85
2578 2707 2.670934 GTGGCAGCAGGTGGTCTG 60.671 66.667 0.86 0.00 46.03 3.51
2579 2708 3.957586 TGGCAGCAGGTGGTCTGG 61.958 66.667 0.86 0.00 43.54 3.86
2604 2733 3.385384 CAGCAGCCGACAGGAGGA 61.385 66.667 0.00 0.00 41.02 3.71
2605 2734 2.604686 AGCAGCCGACAGGAGGAA 60.605 61.111 0.00 0.00 41.02 3.36
2606 2735 2.125350 GCAGCCGACAGGAGGAAG 60.125 66.667 0.00 0.00 41.02 3.46
2607 2736 2.650116 GCAGCCGACAGGAGGAAGA 61.650 63.158 0.00 0.00 41.02 2.87
2608 2737 1.975327 CAGCCGACAGGAGGAAGAA 59.025 57.895 0.00 0.00 41.02 2.52
2609 2738 0.108424 CAGCCGACAGGAGGAAGAAG 60.108 60.000 0.00 0.00 41.02 2.85
2610 2739 0.251832 AGCCGACAGGAGGAAGAAGA 60.252 55.000 0.00 0.00 41.02 2.87
2611 2740 0.608640 GCCGACAGGAGGAAGAAGAA 59.391 55.000 0.00 0.00 41.02 2.52
2612 2741 1.673329 GCCGACAGGAGGAAGAAGAAC 60.673 57.143 0.00 0.00 41.02 3.01
2613 2742 1.618837 CCGACAGGAGGAAGAAGAACA 59.381 52.381 0.00 0.00 41.02 3.18
2614 2743 2.234908 CCGACAGGAGGAAGAAGAACAT 59.765 50.000 0.00 0.00 41.02 2.71
2615 2744 3.257393 CGACAGGAGGAAGAAGAACATG 58.743 50.000 0.00 0.00 0.00 3.21
2616 2745 3.056536 CGACAGGAGGAAGAAGAACATGA 60.057 47.826 0.00 0.00 0.00 3.07
2617 2746 4.382470 CGACAGGAGGAAGAAGAACATGAT 60.382 45.833 0.00 0.00 0.00 2.45
2618 2747 5.096443 ACAGGAGGAAGAAGAACATGATC 57.904 43.478 0.00 0.00 0.00 2.92
2619 2748 4.782156 ACAGGAGGAAGAAGAACATGATCT 59.218 41.667 0.00 0.00 0.00 2.75
2620 2749 5.117584 CAGGAGGAAGAAGAACATGATCTG 58.882 45.833 6.22 0.00 0.00 2.90
2621 2750 4.782156 AGGAGGAAGAAGAACATGATCTGT 59.218 41.667 6.22 0.00 40.84 3.41
2634 2763 7.587037 AACATGATCTGTTTTTCAGGAAGAA 57.413 32.000 0.00 0.00 45.98 2.52
2635 2764 7.587037 ACATGATCTGTTTTTCAGGAAGAAA 57.413 32.000 0.00 0.00 44.21 2.52
2646 2775 4.910458 TCAGGAAGAAAAGGGTTAGAGG 57.090 45.455 0.00 0.00 0.00 3.69
2647 2776 4.499472 TCAGGAAGAAAAGGGTTAGAGGA 58.501 43.478 0.00 0.00 0.00 3.71
2648 2777 4.911522 TCAGGAAGAAAAGGGTTAGAGGAA 59.088 41.667 0.00 0.00 0.00 3.36
2649 2778 5.371472 TCAGGAAGAAAAGGGTTAGAGGAAA 59.629 40.000 0.00 0.00 0.00 3.13
2650 2779 6.068670 CAGGAAGAAAAGGGTTAGAGGAAAA 58.931 40.000 0.00 0.00 0.00 2.29
2651 2780 6.549736 CAGGAAGAAAAGGGTTAGAGGAAAAA 59.450 38.462 0.00 0.00 0.00 1.94
2652 2781 6.778069 AGGAAGAAAAGGGTTAGAGGAAAAAG 59.222 38.462 0.00 0.00 0.00 2.27
2653 2782 6.776116 GGAAGAAAAGGGTTAGAGGAAAAAGA 59.224 38.462 0.00 0.00 0.00 2.52
2654 2783 7.451877 GGAAGAAAAGGGTTAGAGGAAAAAGAT 59.548 37.037 0.00 0.00 0.00 2.40
2655 2784 7.767250 AGAAAAGGGTTAGAGGAAAAAGATG 57.233 36.000 0.00 0.00 0.00 2.90
2656 2785 7.298374 AGAAAAGGGTTAGAGGAAAAAGATGT 58.702 34.615 0.00 0.00 0.00 3.06
2657 2786 8.445588 AGAAAAGGGTTAGAGGAAAAAGATGTA 58.554 33.333 0.00 0.00 0.00 2.29
2658 2787 9.074576 GAAAAGGGTTAGAGGAAAAAGATGTAA 57.925 33.333 0.00 0.00 0.00 2.41
2659 2788 9.601810 AAAAGGGTTAGAGGAAAAAGATGTAAT 57.398 29.630 0.00 0.00 0.00 1.89
2662 2791 9.853177 AGGGTTAGAGGAAAAAGATGTAATATG 57.147 33.333 0.00 0.00 0.00 1.78
2663 2792 9.067986 GGGTTAGAGGAAAAAGATGTAATATGG 57.932 37.037 0.00 0.00 0.00 2.74
2664 2793 8.568794 GGTTAGAGGAAAAAGATGTAATATGGC 58.431 37.037 0.00 0.00 0.00 4.40
2665 2794 8.568794 GTTAGAGGAAAAAGATGTAATATGGCC 58.431 37.037 0.00 0.00 0.00 5.36
2666 2795 6.071320 AGAGGAAAAAGATGTAATATGGCCC 58.929 40.000 0.00 0.00 0.00 5.80
2667 2796 4.827284 AGGAAAAAGATGTAATATGGCCCG 59.173 41.667 0.00 0.00 0.00 6.13
2668 2797 4.583073 GGAAAAAGATGTAATATGGCCCGT 59.417 41.667 0.00 0.00 0.00 5.28
2669 2798 5.068591 GGAAAAAGATGTAATATGGCCCGTT 59.931 40.000 0.00 0.00 0.00 4.44
2670 2799 5.767816 AAAAGATGTAATATGGCCCGTTC 57.232 39.130 0.00 0.00 0.00 3.95
2671 2800 3.040147 AGATGTAATATGGCCCGTTCG 57.960 47.619 0.00 0.00 0.00 3.95
2672 2801 2.367567 AGATGTAATATGGCCCGTTCGT 59.632 45.455 0.00 0.00 0.00 3.85
2673 2802 2.695127 TGTAATATGGCCCGTTCGTT 57.305 45.000 0.00 0.00 0.00 3.85
2674 2803 2.988570 TGTAATATGGCCCGTTCGTTT 58.011 42.857 0.00 0.00 0.00 3.60
2675 2804 2.937799 TGTAATATGGCCCGTTCGTTTC 59.062 45.455 0.00 0.00 0.00 2.78
2676 2805 2.413310 AATATGGCCCGTTCGTTTCT 57.587 45.000 0.00 0.00 0.00 2.52
2677 2806 2.413310 ATATGGCCCGTTCGTTTCTT 57.587 45.000 0.00 0.00 0.00 2.52
2678 2807 3.547054 ATATGGCCCGTTCGTTTCTTA 57.453 42.857 0.00 0.00 0.00 2.10
2679 2808 2.413310 ATGGCCCGTTCGTTTCTTAT 57.587 45.000 0.00 0.00 0.00 1.73
2680 2809 1.729284 TGGCCCGTTCGTTTCTTATC 58.271 50.000 0.00 0.00 0.00 1.75
2681 2810 1.276989 TGGCCCGTTCGTTTCTTATCT 59.723 47.619 0.00 0.00 0.00 1.98
2682 2811 2.496871 TGGCCCGTTCGTTTCTTATCTA 59.503 45.455 0.00 0.00 0.00 1.98
2683 2812 3.055963 TGGCCCGTTCGTTTCTTATCTAA 60.056 43.478 0.00 0.00 0.00 2.10
2684 2813 3.308053 GGCCCGTTCGTTTCTTATCTAAC 59.692 47.826 0.00 0.00 0.00 2.34
2685 2814 3.000376 GCCCGTTCGTTTCTTATCTAACG 60.000 47.826 0.00 0.00 46.16 3.18
2686 2815 3.000376 CCCGTTCGTTTCTTATCTAACGC 60.000 47.826 0.00 0.00 44.87 4.84
2687 2816 3.855950 CCGTTCGTTTCTTATCTAACGCT 59.144 43.478 0.00 0.00 44.87 5.07
2688 2817 4.325472 CCGTTCGTTTCTTATCTAACGCTT 59.675 41.667 0.00 0.00 44.87 4.68
2689 2818 5.164022 CCGTTCGTTTCTTATCTAACGCTTT 60.164 40.000 0.00 0.00 44.87 3.51
2690 2819 6.033831 CCGTTCGTTTCTTATCTAACGCTTTA 59.966 38.462 0.00 0.00 44.87 1.85
2691 2820 7.103021 CGTTCGTTTCTTATCTAACGCTTTAG 58.897 38.462 3.62 3.62 44.87 1.85
2692 2821 7.007725 CGTTCGTTTCTTATCTAACGCTTTAGA 59.992 37.037 14.34 14.34 46.26 2.10
2703 2832 4.622701 AACGCTTTAGATTGATTCTGGC 57.377 40.909 0.00 0.00 35.79 4.85
2704 2833 3.609853 ACGCTTTAGATTGATTCTGGCA 58.390 40.909 0.00 0.00 35.79 4.92
2705 2834 4.009675 ACGCTTTAGATTGATTCTGGCAA 58.990 39.130 0.00 0.00 35.79 4.52
2706 2835 4.458989 ACGCTTTAGATTGATTCTGGCAAA 59.541 37.500 0.00 0.00 35.79 3.68
2707 2836 5.048083 ACGCTTTAGATTGATTCTGGCAAAA 60.048 36.000 0.00 0.00 35.79 2.44
2708 2837 6.038356 CGCTTTAGATTGATTCTGGCAAAAT 58.962 36.000 0.00 0.00 35.79 1.82
2709 2838 6.197842 CGCTTTAGATTGATTCTGGCAAAATC 59.802 38.462 6.59 6.59 35.79 2.17
2710 2839 6.197842 GCTTTAGATTGATTCTGGCAAAATCG 59.802 38.462 8.88 0.00 36.18 3.34
2711 2840 4.644103 AGATTGATTCTGGCAAAATCGG 57.356 40.909 8.88 0.00 36.18 4.18
2712 2841 2.652941 TTGATTCTGGCAAAATCGGC 57.347 45.000 8.88 0.00 36.18 5.54
2713 2842 1.838112 TGATTCTGGCAAAATCGGCT 58.162 45.000 8.88 0.00 36.18 5.52
2714 2843 1.473677 TGATTCTGGCAAAATCGGCTG 59.526 47.619 8.88 0.00 36.18 4.85
2715 2844 1.745087 GATTCTGGCAAAATCGGCTGA 59.255 47.619 0.00 0.00 37.58 4.26
2716 2845 1.838112 TTCTGGCAAAATCGGCTGAT 58.162 45.000 0.90 0.90 38.80 2.90
2717 2846 1.382522 TCTGGCAAAATCGGCTGATC 58.617 50.000 8.88 0.00 35.05 2.92
2718 2847 0.383231 CTGGCAAAATCGGCTGATCC 59.617 55.000 8.88 6.26 32.24 3.36
2719 2848 0.323269 TGGCAAAATCGGCTGATCCA 60.323 50.000 8.88 9.03 32.24 3.41
2720 2849 0.817013 GGCAAAATCGGCTGATCCAA 59.183 50.000 8.88 0.00 32.24 3.53
2721 2850 1.410153 GGCAAAATCGGCTGATCCAAT 59.590 47.619 8.88 0.00 32.24 3.16
2722 2851 2.622942 GGCAAAATCGGCTGATCCAATA 59.377 45.455 8.88 0.00 32.24 1.90
2723 2852 3.256631 GGCAAAATCGGCTGATCCAATAT 59.743 43.478 8.88 0.00 32.24 1.28
2724 2853 4.232221 GCAAAATCGGCTGATCCAATATG 58.768 43.478 8.88 3.56 32.24 1.78
2725 2854 4.261741 GCAAAATCGGCTGATCCAATATGT 60.262 41.667 8.88 0.00 32.24 2.29
2726 2855 5.217393 CAAAATCGGCTGATCCAATATGTG 58.783 41.667 8.88 0.00 32.24 3.21
2727 2856 3.777106 ATCGGCTGATCCAATATGTGT 57.223 42.857 0.90 0.00 34.01 3.72
2728 2857 3.558931 TCGGCTGATCCAATATGTGTT 57.441 42.857 0.00 0.00 34.01 3.32
2729 2858 3.884895 TCGGCTGATCCAATATGTGTTT 58.115 40.909 0.00 0.00 34.01 2.83
2730 2859 4.269183 TCGGCTGATCCAATATGTGTTTT 58.731 39.130 0.00 0.00 34.01 2.43
2731 2860 4.335315 TCGGCTGATCCAATATGTGTTTTC 59.665 41.667 0.00 0.00 34.01 2.29
2732 2861 4.096231 CGGCTGATCCAATATGTGTTTTCA 59.904 41.667 0.00 0.00 34.01 2.69
2733 2862 5.585390 GGCTGATCCAATATGTGTTTTCAG 58.415 41.667 0.00 0.00 32.66 3.02
2734 2863 5.126061 GGCTGATCCAATATGTGTTTTCAGT 59.874 40.000 0.00 0.00 32.35 3.41
2735 2864 6.261118 GCTGATCCAATATGTGTTTTCAGTC 58.739 40.000 0.00 0.00 32.35 3.51
2736 2865 6.127925 GCTGATCCAATATGTGTTTTCAGTCA 60.128 38.462 0.00 0.00 32.35 3.41
2737 2866 7.575532 GCTGATCCAATATGTGTTTTCAGTCAA 60.576 37.037 0.00 0.00 32.35 3.18
2738 2867 7.592938 TGATCCAATATGTGTTTTCAGTCAAC 58.407 34.615 0.00 0.00 0.00 3.18
2739 2868 7.448161 TGATCCAATATGTGTTTTCAGTCAACT 59.552 33.333 0.00 0.00 0.00 3.16
2740 2869 7.581213 TCCAATATGTGTTTTCAGTCAACTT 57.419 32.000 0.00 0.00 0.00 2.66
2741 2870 7.424803 TCCAATATGTGTTTTCAGTCAACTTG 58.575 34.615 0.00 0.00 0.00 3.16
2742 2871 7.068103 TCCAATATGTGTTTTCAGTCAACTTGT 59.932 33.333 0.00 0.00 0.00 3.16
2743 2872 8.349245 CCAATATGTGTTTTCAGTCAACTTGTA 58.651 33.333 0.00 0.00 0.00 2.41
2744 2873 9.169468 CAATATGTGTTTTCAGTCAACTTGTAC 57.831 33.333 0.00 0.00 0.00 2.90
2745 2874 5.554822 TGTGTTTTCAGTCAACTTGTACC 57.445 39.130 0.00 0.00 0.00 3.34
2746 2875 5.250200 TGTGTTTTCAGTCAACTTGTACCT 58.750 37.500 0.00 0.00 0.00 3.08
2747 2876 6.408035 TGTGTTTTCAGTCAACTTGTACCTA 58.592 36.000 0.00 0.00 0.00 3.08
2748 2877 6.537301 TGTGTTTTCAGTCAACTTGTACCTAG 59.463 38.462 0.00 0.00 0.00 3.02
2749 2878 5.526111 TGTTTTCAGTCAACTTGTACCTAGC 59.474 40.000 0.00 0.00 0.00 3.42
2750 2879 3.955650 TCAGTCAACTTGTACCTAGCC 57.044 47.619 0.00 0.00 0.00 3.93
2751 2880 3.236047 TCAGTCAACTTGTACCTAGCCA 58.764 45.455 0.00 0.00 0.00 4.75
2752 2881 3.644265 TCAGTCAACTTGTACCTAGCCAA 59.356 43.478 0.00 0.00 0.00 4.52
2753 2882 4.286032 TCAGTCAACTTGTACCTAGCCAAT 59.714 41.667 0.00 0.00 0.00 3.16
2754 2883 4.631813 CAGTCAACTTGTACCTAGCCAATC 59.368 45.833 0.00 0.00 0.00 2.67
2755 2884 3.939592 GTCAACTTGTACCTAGCCAATCC 59.060 47.826 0.00 0.00 0.00 3.01
2756 2885 3.054655 TCAACTTGTACCTAGCCAATCCC 60.055 47.826 0.00 0.00 0.00 3.85
2757 2886 2.557869 ACTTGTACCTAGCCAATCCCA 58.442 47.619 0.00 0.00 0.00 4.37
2758 2887 3.123273 ACTTGTACCTAGCCAATCCCAT 58.877 45.455 0.00 0.00 0.00 4.00
2759 2888 4.303794 ACTTGTACCTAGCCAATCCCATA 58.696 43.478 0.00 0.00 0.00 2.74
2760 2889 4.913968 ACTTGTACCTAGCCAATCCCATAT 59.086 41.667 0.00 0.00 0.00 1.78
2761 2890 4.908601 TGTACCTAGCCAATCCCATATG 57.091 45.455 0.00 0.00 0.00 1.78
2762 2891 2.887151 ACCTAGCCAATCCCATATGC 57.113 50.000 0.00 0.00 0.00 3.14
2763 2892 2.065007 ACCTAGCCAATCCCATATGCA 58.935 47.619 0.00 0.00 0.00 3.96
2764 2893 2.651334 ACCTAGCCAATCCCATATGCAT 59.349 45.455 3.79 3.79 0.00 3.96
2765 2894 3.021695 CCTAGCCAATCCCATATGCATG 58.978 50.000 10.16 0.00 0.00 4.06
2766 2895 1.263356 AGCCAATCCCATATGCATGC 58.737 50.000 11.82 11.82 0.00 4.06
2767 2896 0.970640 GCCAATCCCATATGCATGCA 59.029 50.000 25.04 25.04 0.00 3.96
2768 2897 1.345089 GCCAATCCCATATGCATGCAA 59.655 47.619 26.68 14.46 0.00 4.08
2769 2898 2.027561 GCCAATCCCATATGCATGCAAT 60.028 45.455 26.68 16.11 0.00 3.56
2770 2899 3.558321 GCCAATCCCATATGCATGCAATT 60.558 43.478 26.68 15.56 0.00 2.32
2771 2900 4.000325 CCAATCCCATATGCATGCAATTG 59.000 43.478 26.68 25.07 34.98 2.32
2772 2901 4.262678 CCAATCCCATATGCATGCAATTGA 60.263 41.667 29.22 20.29 36.06 2.57
2773 2902 5.487433 CAATCCCATATGCATGCAATTGAT 58.513 37.500 26.68 18.01 36.06 2.57
2774 2903 5.755409 ATCCCATATGCATGCAATTGATT 57.245 34.783 26.68 9.68 0.00 2.57
2775 2904 6.860790 ATCCCATATGCATGCAATTGATTA 57.139 33.333 26.68 11.84 0.00 1.75
2776 2905 6.275494 TCCCATATGCATGCAATTGATTAG 57.725 37.500 26.68 11.42 0.00 1.73
2777 2906 5.186215 TCCCATATGCATGCAATTGATTAGG 59.814 40.000 26.68 18.84 0.00 2.69
2778 2907 5.416083 CCATATGCATGCAATTGATTAGGG 58.584 41.667 26.68 17.89 0.00 3.53
2779 2908 5.416083 CATATGCATGCAATTGATTAGGGG 58.584 41.667 26.68 1.90 0.00 4.79
2780 2909 2.040939 TGCATGCAATTGATTAGGGGG 58.959 47.619 20.30 0.00 0.00 5.40
2781 2910 2.041701 GCATGCAATTGATTAGGGGGT 58.958 47.619 14.21 0.00 0.00 4.95
2782 2911 3.230134 GCATGCAATTGATTAGGGGGTA 58.770 45.455 14.21 0.00 0.00 3.69
2783 2912 3.834231 GCATGCAATTGATTAGGGGGTAT 59.166 43.478 14.21 0.00 0.00 2.73
2784 2913 5.016173 GCATGCAATTGATTAGGGGGTATA 58.984 41.667 14.21 0.00 0.00 1.47
2785 2914 5.658190 GCATGCAATTGATTAGGGGGTATAT 59.342 40.000 14.21 0.00 0.00 0.86
2786 2915 6.833416 GCATGCAATTGATTAGGGGGTATATA 59.167 38.462 14.21 0.00 0.00 0.86
2787 2916 7.506938 GCATGCAATTGATTAGGGGGTATATAT 59.493 37.037 14.21 0.00 0.00 0.86
2788 2917 8.853126 CATGCAATTGATTAGGGGGTATATATG 58.147 37.037 10.34 0.00 0.00 1.78
2789 2918 7.938686 TGCAATTGATTAGGGGGTATATATGT 58.061 34.615 10.34 0.00 0.00 2.29
2790 2919 9.063484 TGCAATTGATTAGGGGGTATATATGTA 57.937 33.333 10.34 0.00 0.00 2.29
2820 2949 3.425162 TTTGAAAAGAGAGCTCCCTCC 57.575 47.619 10.93 0.00 38.96 4.30
2821 2950 1.280457 TGAAAAGAGAGCTCCCTCCC 58.720 55.000 10.93 0.00 38.96 4.30
2822 2951 1.203364 TGAAAAGAGAGCTCCCTCCCT 60.203 52.381 10.93 0.00 38.96 4.20
2823 2952 1.209261 GAAAAGAGAGCTCCCTCCCTG 59.791 57.143 10.93 0.00 38.96 4.45
2824 2953 0.415429 AAAGAGAGCTCCCTCCCTGA 59.585 55.000 10.93 0.00 38.96 3.86
2825 2954 0.641601 AAGAGAGCTCCCTCCCTGAT 59.358 55.000 10.93 0.00 38.96 2.90
2826 2955 0.641601 AGAGAGCTCCCTCCCTGATT 59.358 55.000 10.93 0.00 38.96 2.57
2827 2956 1.009429 AGAGAGCTCCCTCCCTGATTT 59.991 52.381 10.93 0.00 38.96 2.17
2828 2957 1.416030 GAGAGCTCCCTCCCTGATTTC 59.584 57.143 10.93 0.00 38.96 2.17
2829 2958 0.472044 GAGCTCCCTCCCTGATTTCC 59.528 60.000 0.87 0.00 31.68 3.13
2830 2959 0.253347 AGCTCCCTCCCTGATTTCCA 60.253 55.000 0.00 0.00 0.00 3.53
2831 2960 0.849417 GCTCCCTCCCTGATTTCCAT 59.151 55.000 0.00 0.00 0.00 3.41
2832 2961 1.216427 GCTCCCTCCCTGATTTCCATT 59.784 52.381 0.00 0.00 0.00 3.16
2833 2962 2.443255 GCTCCCTCCCTGATTTCCATTA 59.557 50.000 0.00 0.00 0.00 1.90
2834 2963 3.117512 GCTCCCTCCCTGATTTCCATTAA 60.118 47.826 0.00 0.00 0.00 1.40
2835 2964 4.631169 GCTCCCTCCCTGATTTCCATTAAA 60.631 45.833 0.00 0.00 0.00 1.52
2836 2965 5.129368 TCCCTCCCTGATTTCCATTAAAG 57.871 43.478 0.00 0.00 0.00 1.85
2837 2966 4.793520 TCCCTCCCTGATTTCCATTAAAGA 59.206 41.667 0.00 0.00 0.00 2.52
2838 2967 5.255207 TCCCTCCCTGATTTCCATTAAAGAA 59.745 40.000 0.00 0.00 0.00 2.52
2839 2968 5.957774 CCCTCCCTGATTTCCATTAAAGAAA 59.042 40.000 6.52 6.52 37.61 2.52
2840 2969 6.127338 CCCTCCCTGATTTCCATTAAAGAAAC 60.127 42.308 6.26 3.17 36.13 2.78
2841 2970 6.127338 CCTCCCTGATTTCCATTAAAGAAACC 60.127 42.308 6.26 0.00 36.13 3.27
2842 2971 6.318913 TCCCTGATTTCCATTAAAGAAACCA 58.681 36.000 6.26 3.10 36.13 3.67
2843 2972 6.210584 TCCCTGATTTCCATTAAAGAAACCAC 59.789 38.462 6.26 3.58 36.13 4.16
2844 2973 6.014669 CCCTGATTTCCATTAAAGAAACCACA 60.015 38.462 6.26 6.77 36.13 4.17
2845 2974 7.310609 CCCTGATTTCCATTAAAGAAACCACAT 60.311 37.037 6.26 0.00 36.13 3.21
2846 2975 8.096414 CCTGATTTCCATTAAAGAAACCACATT 58.904 33.333 6.26 0.00 36.13 2.71
2847 2976 8.830201 TGATTTCCATTAAAGAAACCACATTG 57.170 30.769 6.26 0.00 36.13 2.82
2848 2977 8.428063 TGATTTCCATTAAAGAAACCACATTGT 58.572 29.630 6.26 0.00 36.13 2.71
2849 2978 8.831715 ATTTCCATTAAAGAAACCACATTGTC 57.168 30.769 6.26 0.00 36.13 3.18
2850 2979 7.595819 TTCCATTAAAGAAACCACATTGTCT 57.404 32.000 0.00 0.00 0.00 3.41
2851 2980 7.595819 TCCATTAAAGAAACCACATTGTCTT 57.404 32.000 0.00 0.00 31.69 3.01
2852 2981 7.657336 TCCATTAAAGAAACCACATTGTCTTC 58.343 34.615 0.00 0.00 30.10 2.87
2853 2982 7.505585 TCCATTAAAGAAACCACATTGTCTTCT 59.494 33.333 0.00 0.00 30.10 2.85
2854 2983 8.143835 CCATTAAAGAAACCACATTGTCTTCTT 58.856 33.333 10.27 10.27 37.82 2.52
2857 2986 7.639113 AAAGAAACCACATTGTCTTCTTACA 57.361 32.000 14.07 0.00 35.76 2.41
2858 2987 7.639113 AAGAAACCACATTGTCTTCTTACAA 57.361 32.000 12.87 0.00 43.16 2.41
2859 2988 7.027778 AGAAACCACATTGTCTTCTTACAAC 57.972 36.000 0.00 0.00 41.89 3.32
2860 2989 6.828785 AGAAACCACATTGTCTTCTTACAACT 59.171 34.615 0.00 0.00 41.89 3.16
2861 2990 7.990886 AGAAACCACATTGTCTTCTTACAACTA 59.009 33.333 0.00 0.00 41.89 2.24
2862 2991 7.492352 AACCACATTGTCTTCTTACAACTAC 57.508 36.000 0.00 0.00 41.89 2.73
2863 2992 6.827727 ACCACATTGTCTTCTTACAACTACT 58.172 36.000 0.00 0.00 41.89 2.57
2864 2993 7.959175 ACCACATTGTCTTCTTACAACTACTA 58.041 34.615 0.00 0.00 41.89 1.82
2865 2994 8.088981 ACCACATTGTCTTCTTACAACTACTAG 58.911 37.037 0.00 0.00 41.89 2.57
2866 2995 7.063544 CCACATTGTCTTCTTACAACTACTAGC 59.936 40.741 0.00 0.00 41.89 3.42
2867 2996 7.815068 CACATTGTCTTCTTACAACTACTAGCT 59.185 37.037 0.00 0.00 41.89 3.32
2868 2997 8.030106 ACATTGTCTTCTTACAACTACTAGCTC 58.970 37.037 0.00 0.00 41.89 4.09
2869 2998 6.512342 TGTCTTCTTACAACTACTAGCTCC 57.488 41.667 0.00 0.00 0.00 4.70
2870 2999 6.246919 TGTCTTCTTACAACTACTAGCTCCT 58.753 40.000 0.00 0.00 0.00 3.69
2871 3000 7.400439 TGTCTTCTTACAACTACTAGCTCCTA 58.600 38.462 0.00 0.00 0.00 2.94
2872 3001 7.886970 TGTCTTCTTACAACTACTAGCTCCTAA 59.113 37.037 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.656040 TCAATTGCAGCTTAATTATGTTGATTT 57.344 25.926 16.22 5.94 0.00 2.17
1 2 9.656040 TTCAATTGCAGCTTAATTATGTTGATT 57.344 25.926 16.22 7.48 0.00 2.57
2 3 9.656040 TTTCAATTGCAGCTTAATTATGTTGAT 57.344 25.926 16.22 2.74 0.00 2.57
3 4 9.142515 CTTTCAATTGCAGCTTAATTATGTTGA 57.857 29.630 16.22 7.29 0.00 3.18
4 5 9.142515 TCTTTCAATTGCAGCTTAATTATGTTG 57.857 29.630 0.00 9.87 0.00 3.33
5 6 9.362539 CTCTTTCAATTGCAGCTTAATTATGTT 57.637 29.630 0.00 0.00 0.00 2.71
6 7 7.977853 CCTCTTTCAATTGCAGCTTAATTATGT 59.022 33.333 0.00 0.00 0.00 2.29
7 8 7.977853 ACCTCTTTCAATTGCAGCTTAATTATG 59.022 33.333 0.00 0.00 0.00 1.90
8 9 8.071177 ACCTCTTTCAATTGCAGCTTAATTAT 57.929 30.769 0.00 0.00 0.00 1.28
9 10 7.394359 AGACCTCTTTCAATTGCAGCTTAATTA 59.606 33.333 0.00 0.00 0.00 1.40
10 11 6.210185 AGACCTCTTTCAATTGCAGCTTAATT 59.790 34.615 0.00 0.88 0.00 1.40
11 12 5.713861 AGACCTCTTTCAATTGCAGCTTAAT 59.286 36.000 0.00 0.00 0.00 1.40
12 13 5.072741 AGACCTCTTTCAATTGCAGCTTAA 58.927 37.500 0.00 0.00 0.00 1.85
13 14 4.655963 AGACCTCTTTCAATTGCAGCTTA 58.344 39.130 0.00 0.00 0.00 3.09
14 15 3.494332 AGACCTCTTTCAATTGCAGCTT 58.506 40.909 0.00 0.00 0.00 3.74
15 16 3.151912 AGACCTCTTTCAATTGCAGCT 57.848 42.857 0.00 0.00 0.00 4.24
16 17 5.124457 TCAATAGACCTCTTTCAATTGCAGC 59.876 40.000 0.00 0.00 0.00 5.25
17 18 6.748333 TCAATAGACCTCTTTCAATTGCAG 57.252 37.500 0.00 0.00 0.00 4.41
18 19 7.523293 TTTCAATAGACCTCTTTCAATTGCA 57.477 32.000 0.00 0.00 0.00 4.08
19 20 8.992835 ATTTTCAATAGACCTCTTTCAATTGC 57.007 30.769 0.00 0.00 0.00 3.56
22 23 9.753674 TGGTATTTTCAATAGACCTCTTTCAAT 57.246 29.630 0.00 0.00 0.00 2.57
23 24 9.581289 TTGGTATTTTCAATAGACCTCTTTCAA 57.419 29.630 0.00 0.00 0.00 2.69
24 25 9.231297 CTTGGTATTTTCAATAGACCTCTTTCA 57.769 33.333 0.00 0.00 0.00 2.69
25 26 9.232473 ACTTGGTATTTTCAATAGACCTCTTTC 57.768 33.333 0.00 0.00 0.00 2.62
30 31 9.760077 CGTATACTTGGTATTTTCAATAGACCT 57.240 33.333 0.56 0.00 30.79 3.85
31 32 8.493547 GCGTATACTTGGTATTTTCAATAGACC 58.506 37.037 0.56 0.00 30.79 3.85
32 33 9.037737 TGCGTATACTTGGTATTTTCAATAGAC 57.962 33.333 0.56 0.00 30.79 2.59
33 34 9.602568 TTGCGTATACTTGGTATTTTCAATAGA 57.397 29.630 0.56 0.00 30.79 1.98
36 37 9.730420 GATTTGCGTATACTTGGTATTTTCAAT 57.270 29.630 0.56 0.00 30.79 2.57
37 38 8.185505 GGATTTGCGTATACTTGGTATTTTCAA 58.814 33.333 0.56 0.00 30.79 2.69
38 39 7.554835 AGGATTTGCGTATACTTGGTATTTTCA 59.445 33.333 0.56 0.00 30.79 2.69
39 40 7.927048 AGGATTTGCGTATACTTGGTATTTTC 58.073 34.615 0.56 0.00 30.79 2.29
40 41 7.875327 AGGATTTGCGTATACTTGGTATTTT 57.125 32.000 0.56 0.00 30.79 1.82
41 42 7.875327 AAGGATTTGCGTATACTTGGTATTT 57.125 32.000 0.56 0.00 30.79 1.40
42 43 9.216117 GATAAGGATTTGCGTATACTTGGTATT 57.784 33.333 0.56 0.00 31.21 1.89
43 44 8.594550 AGATAAGGATTTGCGTATACTTGGTAT 58.405 33.333 0.56 0.00 31.21 2.73
44 45 7.959175 AGATAAGGATTTGCGTATACTTGGTA 58.041 34.615 0.56 0.00 31.21 3.25
85 86 4.039852 GGTACTTCCATTGGCCAAGAAAAA 59.960 41.667 24.94 13.66 35.97 1.94
86 87 3.576550 GGTACTTCCATTGGCCAAGAAAA 59.423 43.478 24.94 15.38 35.97 2.29
87 88 3.161866 GGTACTTCCATTGGCCAAGAAA 58.838 45.455 24.94 15.72 35.97 2.52
88 89 2.109128 TGGTACTTCCATTGGCCAAGAA 59.891 45.455 24.94 20.24 41.93 2.52
89 90 1.707989 TGGTACTTCCATTGGCCAAGA 59.292 47.619 24.94 13.91 41.93 3.02
90 91 2.214376 TGGTACTTCCATTGGCCAAG 57.786 50.000 24.94 12.28 41.93 3.61
101 102 5.990668 AGGGAGTGTATCATTTGGTACTTC 58.009 41.667 2.90 1.45 0.00 3.01
104 105 5.944007 ACAAAGGGAGTGTATCATTTGGTAC 59.056 40.000 0.00 0.00 39.04 3.34
111 112 4.589908 GTGGAACAAAGGGAGTGTATCAT 58.410 43.478 0.00 0.00 44.16 2.45
152 155 8.898761 TGAAACTTAGCTTTCACAAAATCAGTA 58.101 29.630 0.00 0.00 35.63 2.74
209 212 8.780846 TTACGTTTAGTATTGTGGACATCAAT 57.219 30.769 0.00 0.00 38.72 2.57
255 262 9.507280 CAAAATCAATACCACTGTATTCATCAC 57.493 33.333 0.00 0.00 44.06 3.06
265 272 8.279970 TCCAGAATACAAAATCAATACCACTG 57.720 34.615 0.00 0.00 0.00 3.66
295 302 9.950680 GGTTCGTCATGAAATACATTTTCATAT 57.049 29.630 11.91 0.00 44.60 1.78
316 323 1.984990 CAATCAACGCCATTTGGTTCG 59.015 47.619 0.00 0.00 37.57 3.95
329 336 8.682936 ATCAACATCTAGAATACCCAATCAAC 57.317 34.615 0.00 0.00 0.00 3.18
331 338 9.159254 ACTATCAACATCTAGAATACCCAATCA 57.841 33.333 0.00 0.00 0.00 2.57
374 386 7.334421 AGGCATAGTGCGTATTAGATATTTTGG 59.666 37.037 0.00 0.00 46.21 3.28
408 420 6.602410 TCATCTGGTATTTTCATTTGCCAA 57.398 33.333 0.00 0.00 0.00 4.52
413 425 7.864108 TGTCGATCATCTGGTATTTTCATTT 57.136 32.000 0.00 0.00 0.00 2.32
432 444 7.997773 AGCCTGAAACTAGTATATATGTCGA 57.002 36.000 0.00 0.00 0.00 4.20
433 445 9.477484 AAAAGCCTGAAACTAGTATATATGTCG 57.523 33.333 0.00 0.00 0.00 4.35
457 469 9.361315 GAAACTAGTAGCTTTCAAAACCAAAAA 57.639 29.630 14.91 0.00 0.00 1.94
458 470 8.524487 TGAAACTAGTAGCTTTCAAAACCAAAA 58.476 29.630 17.92 1.66 34.24 2.44
459 471 8.057536 TGAAACTAGTAGCTTTCAAAACCAAA 57.942 30.769 17.92 2.13 34.24 3.28
460 472 7.201785 CCTGAAACTAGTAGCTTTCAAAACCAA 60.202 37.037 19.43 5.18 36.26 3.67
461 473 6.262273 CCTGAAACTAGTAGCTTTCAAAACCA 59.738 38.462 19.43 6.03 36.26 3.67
462 474 6.669278 CCTGAAACTAGTAGCTTTCAAAACC 58.331 40.000 19.43 3.09 36.26 3.27
463 475 6.017026 AGCCTGAAACTAGTAGCTTTCAAAAC 60.017 38.462 19.43 14.48 36.26 2.43
464 476 6.062095 AGCCTGAAACTAGTAGCTTTCAAAA 58.938 36.000 19.43 6.53 36.26 2.44
465 477 5.621193 AGCCTGAAACTAGTAGCTTTCAAA 58.379 37.500 19.43 6.98 36.26 2.69
466 478 5.228945 AGCCTGAAACTAGTAGCTTTCAA 57.771 39.130 19.43 10.26 36.26 2.69
467 479 4.891992 AGCCTGAAACTAGTAGCTTTCA 57.108 40.909 18.58 18.58 35.56 2.69
470 482 5.228945 TGAAAGCCTGAAACTAGTAGCTT 57.771 39.130 0.00 3.63 42.06 3.74
471 483 4.826556 CTGAAAGCCTGAAACTAGTAGCT 58.173 43.478 0.00 0.00 0.00 3.32
532 545 2.648059 GCATTTCTGCTCTGTACCCAT 58.352 47.619 0.00 0.00 45.32 4.00
757 803 1.078709 TGCAATGCAGAACGAGTAGC 58.921 50.000 2.72 0.00 33.32 3.58
808 858 2.920490 CTGTGAAGCTAGCTCGAGAAAC 59.080 50.000 19.65 10.51 0.00 2.78
817 867 0.806492 GGCCGTACTGTGAAGCTAGC 60.806 60.000 6.62 6.62 0.00 3.42
1034 1121 0.652592 GATGTTGCTTGTATCGCGCT 59.347 50.000 5.56 0.00 0.00 5.92
1041 1128 3.674997 GTTCTCCAGGATGTTGCTTGTA 58.325 45.455 0.00 0.00 0.00 2.41
1131 1230 1.136891 TGATCCACGACAGATTGCGAT 59.863 47.619 0.00 0.00 0.00 4.58
1134 1233 1.293924 CCTGATCCACGACAGATTGC 58.706 55.000 0.00 0.00 36.38 3.56
1135 1234 1.293924 GCCTGATCCACGACAGATTG 58.706 55.000 0.00 0.00 36.38 2.67
1136 1235 0.179000 GGCCTGATCCACGACAGATT 59.821 55.000 0.00 0.00 36.38 2.40
1609 1723 2.820767 CTTCTCCTCTTTCGGCGCGT 62.821 60.000 8.43 0.00 0.00 6.01
1689 1803 4.340097 TCGTCGGAGCTTCCATTTCTATAA 59.660 41.667 0.00 0.00 35.91 0.98
1693 1807 0.895530 TCGTCGGAGCTTCCATTTCT 59.104 50.000 0.00 0.00 35.91 2.52
1710 1833 1.524355 GCGAATGACACCATCTGATCG 59.476 52.381 0.00 0.00 33.41 3.69
1711 1834 1.869767 GGCGAATGACACCATCTGATC 59.130 52.381 0.00 0.00 31.40 2.92
1712 1835 1.210234 TGGCGAATGACACCATCTGAT 59.790 47.619 0.00 0.00 31.40 2.90
1737 1860 2.680352 GTCCCGTGAGCTCTCCCA 60.680 66.667 16.19 0.00 0.00 4.37
1745 1868 0.948623 TTGCATCGTTGTCCCGTGAG 60.949 55.000 0.00 0.00 0.00 3.51
1817 1943 0.329596 ACTGCCAATCTCCTCCAACC 59.670 55.000 0.00 0.00 0.00 3.77
1836 1962 4.654262 GGGAACAGATAGTCCCAATACTCA 59.346 45.833 3.79 0.00 37.46 3.41
1861 1987 5.816682 TCATAACGATCCCTATAGCTGAGA 58.183 41.667 0.00 0.00 0.00 3.27
1865 1991 5.127845 CACCATCATAACGATCCCTATAGCT 59.872 44.000 0.00 0.00 29.21 3.32
1915 2044 7.743116 TTAACTACTTGATCATAACTCCCCA 57.257 36.000 0.00 0.00 0.00 4.96
1982 2111 7.107639 ACAATACAAGTAACCAAAACTGCTT 57.892 32.000 0.00 0.00 0.00 3.91
1987 2116 8.079809 AGTGCATACAATACAAGTAACCAAAAC 58.920 33.333 0.00 0.00 0.00 2.43
1988 2117 8.172352 AGTGCATACAATACAAGTAACCAAAA 57.828 30.769 0.00 0.00 0.00 2.44
1991 2120 8.850007 TTTAGTGCATACAATACAAGTAACCA 57.150 30.769 0.00 0.00 0.00 3.67
1992 2121 9.158233 TCTTTAGTGCATACAATACAAGTAACC 57.842 33.333 0.00 0.00 0.00 2.85
1996 2125 9.884636 TGTATCTTTAGTGCATACAATACAAGT 57.115 29.630 0.00 0.00 31.49 3.16
2004 2133 9.394767 ACAATCAATGTATCTTTAGTGCATACA 57.605 29.630 0.00 0.00 41.63 2.29
2033 2162 9.559732 TGCATATACATTTGCTAATCAAGTACT 57.440 29.630 6.27 0.00 39.60 2.73
2036 2165 9.903682 GATTGCATATACATTTGCTAATCAAGT 57.096 29.630 15.81 0.00 39.60 3.16
2037 2166 9.902196 TGATTGCATATACATTTGCTAATCAAG 57.098 29.630 18.32 0.00 39.93 3.02
2038 2167 9.902196 CTGATTGCATATACATTTGCTAATCAA 57.098 29.630 19.57 0.00 40.93 2.57
2039 2168 8.517056 CCTGATTGCATATACATTTGCTAATCA 58.483 33.333 18.85 18.85 40.21 2.57
2040 2169 8.517878 ACCTGATTGCATATACATTTGCTAATC 58.482 33.333 14.87 14.87 39.60 1.75
2041 2170 8.413309 ACCTGATTGCATATACATTTGCTAAT 57.587 30.769 6.27 4.84 39.60 1.73
2042 2171 7.822161 ACCTGATTGCATATACATTTGCTAA 57.178 32.000 6.27 0.00 39.60 3.09
2043 2172 7.822161 AACCTGATTGCATATACATTTGCTA 57.178 32.000 6.27 0.00 39.60 3.49
2044 2173 6.720112 AACCTGATTGCATATACATTTGCT 57.280 33.333 6.27 0.00 39.60 3.91
2045 2174 6.583806 GCTAACCTGATTGCATATACATTTGC 59.416 38.462 0.00 0.00 39.33 3.68
2046 2175 7.806487 CAGCTAACCTGATTGCATATACATTTG 59.194 37.037 0.00 0.00 44.64 2.32
2047 2176 7.522725 GCAGCTAACCTGATTGCATATACATTT 60.523 37.037 0.00 0.00 44.64 2.32
2048 2177 6.072286 GCAGCTAACCTGATTGCATATACATT 60.072 38.462 0.00 0.00 44.64 2.71
2049 2178 5.413833 GCAGCTAACCTGATTGCATATACAT 59.586 40.000 0.00 0.00 44.64 2.29
2050 2179 4.756642 GCAGCTAACCTGATTGCATATACA 59.243 41.667 0.00 0.00 44.64 2.29
2051 2180 4.756642 TGCAGCTAACCTGATTGCATATAC 59.243 41.667 0.00 0.00 44.64 1.47
2052 2181 4.971939 TGCAGCTAACCTGATTGCATATA 58.028 39.130 0.00 0.00 44.64 0.86
2053 2182 3.824133 TGCAGCTAACCTGATTGCATAT 58.176 40.909 0.00 0.00 44.64 1.78
2054 2183 3.280197 TGCAGCTAACCTGATTGCATA 57.720 42.857 0.00 0.00 44.64 3.14
2055 2184 2.133281 TGCAGCTAACCTGATTGCAT 57.867 45.000 0.00 0.00 44.64 3.96
2056 2185 3.648716 TGCAGCTAACCTGATTGCA 57.351 47.368 0.00 0.00 44.64 4.08
2057 2186 1.003116 CGATGCAGCTAACCTGATTGC 60.003 52.381 0.00 0.00 44.64 3.56
2058 2187 1.003116 GCGATGCAGCTAACCTGATTG 60.003 52.381 0.00 0.00 44.64 2.67
2059 2188 1.303309 GCGATGCAGCTAACCTGATT 58.697 50.000 0.00 0.00 44.64 2.57
2060 2189 0.877649 CGCGATGCAGCTAACCTGAT 60.878 55.000 0.00 0.00 44.64 2.90
2061 2190 1.519234 CGCGATGCAGCTAACCTGA 60.519 57.895 0.00 0.00 44.64 3.86
2062 2191 1.811266 ACGCGATGCAGCTAACCTG 60.811 57.895 15.93 0.00 44.67 4.00
2063 2192 1.811266 CACGCGATGCAGCTAACCT 60.811 57.895 15.93 0.00 34.40 3.50
2064 2193 2.703409 CACGCGATGCAGCTAACC 59.297 61.111 15.93 0.00 34.40 2.85
2065 2194 1.358725 TTCCACGCGATGCAGCTAAC 61.359 55.000 15.93 0.00 34.40 2.34
2066 2195 0.672091 TTTCCACGCGATGCAGCTAA 60.672 50.000 15.93 0.00 34.40 3.09
2067 2196 0.672091 TTTTCCACGCGATGCAGCTA 60.672 50.000 15.93 0.00 34.40 3.32
2068 2197 1.965930 TTTTCCACGCGATGCAGCT 60.966 52.632 15.93 0.00 34.40 4.24
2069 2198 1.797537 GTTTTCCACGCGATGCAGC 60.798 57.895 15.93 0.00 0.00 5.25
2070 2199 1.509787 CGTTTTCCACGCGATGCAG 60.510 57.895 15.93 0.00 43.37 4.41
2071 2200 2.553770 CGTTTTCCACGCGATGCA 59.446 55.556 15.93 0.00 43.37 3.96
2382 2511 1.170290 AAGTTTCCCTTGCGAACCCG 61.170 55.000 0.00 0.00 39.16 5.28
2383 2512 0.313987 CAAGTTTCCCTTGCGAACCC 59.686 55.000 0.00 0.00 43.84 4.11
2384 2513 3.865700 CAAGTTTCCCTTGCGAACC 57.134 52.632 0.00 0.00 43.84 3.62
2391 2520 2.250924 CATTGAGGCCAAGTTTCCCTT 58.749 47.619 5.01 0.00 35.48 3.95
2392 2521 1.147817 ACATTGAGGCCAAGTTTCCCT 59.852 47.619 5.01 0.00 35.48 4.20
2393 2522 1.546029 GACATTGAGGCCAAGTTTCCC 59.454 52.381 5.01 0.00 35.48 3.97
2394 2523 2.519013 AGACATTGAGGCCAAGTTTCC 58.481 47.619 5.01 0.00 35.48 3.13
2395 2524 4.156739 CCTTAGACATTGAGGCCAAGTTTC 59.843 45.833 5.01 0.00 35.48 2.78
2396 2525 4.082125 CCTTAGACATTGAGGCCAAGTTT 58.918 43.478 5.01 0.00 35.48 2.66
2397 2526 3.074538 ACCTTAGACATTGAGGCCAAGTT 59.925 43.478 5.01 0.00 35.48 2.66
2398 2527 2.644798 ACCTTAGACATTGAGGCCAAGT 59.355 45.455 5.01 0.00 35.48 3.16
2399 2528 3.012518 CACCTTAGACATTGAGGCCAAG 58.987 50.000 5.01 0.00 35.48 3.61
2400 2529 2.375174 ACACCTTAGACATTGAGGCCAA 59.625 45.455 5.01 0.00 36.61 4.52
2401 2530 1.985159 ACACCTTAGACATTGAGGCCA 59.015 47.619 5.01 0.00 33.78 5.36
2402 2531 2.359900 CACACCTTAGACATTGAGGCC 58.640 52.381 0.00 0.00 33.78 5.19
2403 2532 1.740025 GCACACCTTAGACATTGAGGC 59.260 52.381 0.00 0.00 33.78 4.70
2404 2533 2.002586 CGCACACCTTAGACATTGAGG 58.997 52.381 0.00 0.00 36.62 3.86
2405 2534 2.002586 CCGCACACCTTAGACATTGAG 58.997 52.381 0.00 0.00 0.00 3.02
2406 2535 1.338674 CCCGCACACCTTAGACATTGA 60.339 52.381 0.00 0.00 0.00 2.57
2407 2536 1.086696 CCCGCACACCTTAGACATTG 58.913 55.000 0.00 0.00 0.00 2.82
2408 2537 0.035439 CCCCGCACACCTTAGACATT 60.035 55.000 0.00 0.00 0.00 2.71
2409 2538 0.907704 TCCCCGCACACCTTAGACAT 60.908 55.000 0.00 0.00 0.00 3.06
2410 2539 1.534476 TCCCCGCACACCTTAGACA 60.534 57.895 0.00 0.00 0.00 3.41
2411 2540 1.218316 CTCCCCGCACACCTTAGAC 59.782 63.158 0.00 0.00 0.00 2.59
2412 2541 1.987855 CCTCCCCGCACACCTTAGA 60.988 63.158 0.00 0.00 0.00 2.10
2413 2542 2.584608 CCTCCCCGCACACCTTAG 59.415 66.667 0.00 0.00 0.00 2.18
2414 2543 3.006728 CCCTCCCCGCACACCTTA 61.007 66.667 0.00 0.00 0.00 2.69
2434 2563 2.440247 CTCCAATTCCGCACCCCC 60.440 66.667 0.00 0.00 0.00 5.40
2435 2564 2.440247 CCTCCAATTCCGCACCCC 60.440 66.667 0.00 0.00 0.00 4.95
2436 2565 1.749258 GACCTCCAATTCCGCACCC 60.749 63.158 0.00 0.00 0.00 4.61
2437 2566 2.106683 CGACCTCCAATTCCGCACC 61.107 63.158 0.00 0.00 0.00 5.01
2438 2567 2.106683 CCGACCTCCAATTCCGCAC 61.107 63.158 0.00 0.00 0.00 5.34
2439 2568 2.267642 CCGACCTCCAATTCCGCA 59.732 61.111 0.00 0.00 0.00 5.69
2440 2569 3.202706 GCCGACCTCCAATTCCGC 61.203 66.667 0.00 0.00 0.00 5.54
2441 2570 1.815421 CTGCCGACCTCCAATTCCG 60.815 63.158 0.00 0.00 0.00 4.30
2442 2571 1.452108 CCTGCCGACCTCCAATTCC 60.452 63.158 0.00 0.00 0.00 3.01
2443 2572 1.452108 CCCTGCCGACCTCCAATTC 60.452 63.158 0.00 0.00 0.00 2.17
2444 2573 2.677228 CCCTGCCGACCTCCAATT 59.323 61.111 0.00 0.00 0.00 2.32
2445 2574 4.115199 GCCCTGCCGACCTCCAAT 62.115 66.667 0.00 0.00 0.00 3.16
2447 2576 3.916438 TAAGCCCTGCCGACCTCCA 62.916 63.158 0.00 0.00 0.00 3.86
2448 2577 3.081409 TAAGCCCTGCCGACCTCC 61.081 66.667 0.00 0.00 0.00 4.30
2449 2578 2.501610 CTAAGCCCTGCCGACCTC 59.498 66.667 0.00 0.00 0.00 3.85
2450 2579 3.787001 GCTAAGCCCTGCCGACCT 61.787 66.667 0.00 0.00 0.00 3.85
2451 2580 4.096003 TGCTAAGCCCTGCCGACC 62.096 66.667 0.00 0.00 0.00 4.79
2452 2581 2.512515 CTGCTAAGCCCTGCCGAC 60.513 66.667 0.00 0.00 0.00 4.79
2453 2582 3.785859 CCTGCTAAGCCCTGCCGA 61.786 66.667 0.00 0.00 0.00 5.54
2454 2583 3.112205 ATCCTGCTAAGCCCTGCCG 62.112 63.158 0.00 0.00 0.00 5.69
2455 2584 1.527844 CATCCTGCTAAGCCCTGCC 60.528 63.158 0.00 0.00 0.00 4.85
2456 2585 0.817229 GACATCCTGCTAAGCCCTGC 60.817 60.000 0.00 0.00 0.00 4.85
2457 2586 0.531532 CGACATCCTGCTAAGCCCTG 60.532 60.000 0.00 0.00 0.00 4.45
2458 2587 0.978146 ACGACATCCTGCTAAGCCCT 60.978 55.000 0.00 0.00 0.00 5.19
2459 2588 0.811616 CACGACATCCTGCTAAGCCC 60.812 60.000 0.00 0.00 0.00 5.19
2460 2589 0.811616 CCACGACATCCTGCTAAGCC 60.812 60.000 0.00 0.00 0.00 4.35
2461 2590 1.432270 GCCACGACATCCTGCTAAGC 61.432 60.000 0.00 0.00 0.00 3.09
2462 2591 1.148157 CGCCACGACATCCTGCTAAG 61.148 60.000 0.00 0.00 0.00 2.18
2463 2592 1.153647 CGCCACGACATCCTGCTAA 60.154 57.895 0.00 0.00 0.00 3.09
2464 2593 2.494445 CGCCACGACATCCTGCTA 59.506 61.111 0.00 0.00 0.00 3.49
2478 2607 4.940593 TTGTGCTTTTGCCGCGCC 62.941 61.111 0.00 0.00 46.87 6.53
2479 2608 3.691356 GTTGTGCTTTTGCCGCGC 61.691 61.111 0.00 0.00 46.87 6.86
2480 2609 2.278466 TGTTGTGCTTTTGCCGCG 60.278 55.556 0.00 0.00 46.87 6.46
2481 2610 1.226945 ACTGTTGTGCTTTTGCCGC 60.227 52.632 0.00 0.00 46.87 6.53
2482 2611 0.871163 CCACTGTTGTGCTTTTGCCG 60.871 55.000 0.00 0.00 46.87 5.69
2483 2612 0.530431 CCCACTGTTGTGCTTTTGCC 60.530 55.000 0.00 0.00 46.87 4.52
2485 2614 0.104671 CCCCCACTGTTGTGCTTTTG 59.895 55.000 0.00 0.00 42.54 2.44
2486 2615 2.515288 CCCCCACTGTTGTGCTTTT 58.485 52.632 0.00 0.00 42.54 2.27
2487 2616 4.275781 CCCCCACTGTTGTGCTTT 57.724 55.556 0.00 0.00 42.54 3.51
2501 2630 2.692741 CTCCCCTCAACCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
2502 2631 2.692741 CCTCCCCTCAACCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
2503 2632 2.692741 CCCTCCCCTCAACCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
2504 2633 2.125225 ACCCTCCCCTCAACCTCC 59.875 66.667 0.00 0.00 0.00 4.30
2505 2634 2.301738 CCACCCTCCCCTCAACCTC 61.302 68.421 0.00 0.00 0.00 3.85
2506 2635 2.204151 CCACCCTCCCCTCAACCT 60.204 66.667 0.00 0.00 0.00 3.50
2507 2636 2.204090 TCCACCCTCCCCTCAACC 60.204 66.667 0.00 0.00 0.00 3.77
2508 2637 2.972819 GCTCCACCCTCCCCTCAAC 61.973 68.421 0.00 0.00 0.00 3.18
2509 2638 2.610859 GCTCCACCCTCCCCTCAA 60.611 66.667 0.00 0.00 0.00 3.02
2555 2684 4.275508 ACCTGCTGCCACCACCTG 62.276 66.667 0.00 0.00 0.00 4.00
2556 2685 4.275508 CACCTGCTGCCACCACCT 62.276 66.667 0.00 0.00 0.00 4.00
2558 2687 4.586235 ACCACCTGCTGCCACCAC 62.586 66.667 0.00 0.00 0.00 4.16
2559 2688 4.269523 GACCACCTGCTGCCACCA 62.270 66.667 0.00 0.00 0.00 4.17
2560 2689 3.958860 AGACCACCTGCTGCCACC 61.959 66.667 0.00 0.00 0.00 4.61
2561 2690 2.670934 CAGACCACCTGCTGCCAC 60.671 66.667 0.00 0.00 35.89 5.01
2562 2691 3.957586 CCAGACCACCTGCTGCCA 61.958 66.667 0.00 0.00 41.57 4.92
2587 2716 2.849120 CTTCCTCCTGTCGGCTGCTG 62.849 65.000 0.95 0.95 0.00 4.41
2588 2717 2.604686 TTCCTCCTGTCGGCTGCT 60.605 61.111 0.00 0.00 0.00 4.24
2589 2718 2.125350 CTTCCTCCTGTCGGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
2590 2719 0.108424 CTTCTTCCTCCTGTCGGCTG 60.108 60.000 0.00 0.00 0.00 4.85
2591 2720 0.251832 TCTTCTTCCTCCTGTCGGCT 60.252 55.000 0.00 0.00 0.00 5.52
2592 2721 0.608640 TTCTTCTTCCTCCTGTCGGC 59.391 55.000 0.00 0.00 0.00 5.54
2593 2722 1.618837 TGTTCTTCTTCCTCCTGTCGG 59.381 52.381 0.00 0.00 0.00 4.79
2594 2723 3.056536 TCATGTTCTTCTTCCTCCTGTCG 60.057 47.826 0.00 0.00 0.00 4.35
2595 2724 4.543590 TCATGTTCTTCTTCCTCCTGTC 57.456 45.455 0.00 0.00 0.00 3.51
2596 2725 4.782156 AGATCATGTTCTTCTTCCTCCTGT 59.218 41.667 0.16 0.00 0.00 4.00
2597 2726 5.117584 CAGATCATGTTCTTCTTCCTCCTG 58.882 45.833 3.44 0.00 0.00 3.86
2598 2727 4.782156 ACAGATCATGTTCTTCTTCCTCCT 59.218 41.667 3.44 0.00 39.96 3.69
2599 2728 5.096443 ACAGATCATGTTCTTCTTCCTCC 57.904 43.478 3.44 0.00 39.96 4.30
2623 2752 5.371472 TCCTCTAACCCTTTTCTTCCTGAAA 59.629 40.000 0.00 0.00 42.33 2.69
2624 2753 4.911522 TCCTCTAACCCTTTTCTTCCTGAA 59.088 41.667 0.00 0.00 0.00 3.02
2625 2754 4.499472 TCCTCTAACCCTTTTCTTCCTGA 58.501 43.478 0.00 0.00 0.00 3.86
2626 2755 4.910458 TCCTCTAACCCTTTTCTTCCTG 57.090 45.455 0.00 0.00 0.00 3.86
2627 2756 5.924769 TTTCCTCTAACCCTTTTCTTCCT 57.075 39.130 0.00 0.00 0.00 3.36
2628 2757 6.776116 TCTTTTTCCTCTAACCCTTTTCTTCC 59.224 38.462 0.00 0.00 0.00 3.46
2629 2758 7.818997 TCTTTTTCCTCTAACCCTTTTCTTC 57.181 36.000 0.00 0.00 0.00 2.87
2630 2759 7.785028 ACATCTTTTTCCTCTAACCCTTTTCTT 59.215 33.333 0.00 0.00 0.00 2.52
2631 2760 7.298374 ACATCTTTTTCCTCTAACCCTTTTCT 58.702 34.615 0.00 0.00 0.00 2.52
2632 2761 7.526142 ACATCTTTTTCCTCTAACCCTTTTC 57.474 36.000 0.00 0.00 0.00 2.29
2633 2762 9.601810 ATTACATCTTTTTCCTCTAACCCTTTT 57.398 29.630 0.00 0.00 0.00 2.27
2636 2765 9.853177 CATATTACATCTTTTTCCTCTAACCCT 57.147 33.333 0.00 0.00 0.00 4.34
2637 2766 9.067986 CCATATTACATCTTTTTCCTCTAACCC 57.932 37.037 0.00 0.00 0.00 4.11
2638 2767 8.568794 GCCATATTACATCTTTTTCCTCTAACC 58.431 37.037 0.00 0.00 0.00 2.85
2639 2768 8.568794 GGCCATATTACATCTTTTTCCTCTAAC 58.431 37.037 0.00 0.00 0.00 2.34
2640 2769 7.724061 GGGCCATATTACATCTTTTTCCTCTAA 59.276 37.037 4.39 0.00 0.00 2.10
2641 2770 7.231467 GGGCCATATTACATCTTTTTCCTCTA 58.769 38.462 4.39 0.00 0.00 2.43
2642 2771 6.071320 GGGCCATATTACATCTTTTTCCTCT 58.929 40.000 4.39 0.00 0.00 3.69
2643 2772 5.048713 CGGGCCATATTACATCTTTTTCCTC 60.049 44.000 4.39 0.00 0.00 3.71
2644 2773 4.827284 CGGGCCATATTACATCTTTTTCCT 59.173 41.667 4.39 0.00 0.00 3.36
2645 2774 4.583073 ACGGGCCATATTACATCTTTTTCC 59.417 41.667 4.39 0.00 0.00 3.13
2646 2775 5.767816 ACGGGCCATATTACATCTTTTTC 57.232 39.130 4.39 0.00 0.00 2.29
2647 2776 5.220970 CGAACGGGCCATATTACATCTTTTT 60.221 40.000 4.39 0.00 0.00 1.94
2648 2777 4.274950 CGAACGGGCCATATTACATCTTTT 59.725 41.667 4.39 0.00 0.00 2.27
2649 2778 3.813166 CGAACGGGCCATATTACATCTTT 59.187 43.478 4.39 0.00 0.00 2.52
2650 2779 3.181458 ACGAACGGGCCATATTACATCTT 60.181 43.478 4.39 0.00 0.00 2.40
2651 2780 2.367567 ACGAACGGGCCATATTACATCT 59.632 45.455 4.39 0.00 0.00 2.90
2652 2781 2.762745 ACGAACGGGCCATATTACATC 58.237 47.619 4.39 0.00 0.00 3.06
2653 2782 2.922740 ACGAACGGGCCATATTACAT 57.077 45.000 4.39 0.00 0.00 2.29
2654 2783 2.695127 AACGAACGGGCCATATTACA 57.305 45.000 4.39 0.00 0.00 2.41
2655 2784 3.200483 AGAAACGAACGGGCCATATTAC 58.800 45.455 4.39 0.00 0.00 1.89
2656 2785 3.547054 AGAAACGAACGGGCCATATTA 57.453 42.857 4.39 0.00 0.00 0.98
2657 2786 2.413310 AGAAACGAACGGGCCATATT 57.587 45.000 4.39 0.00 0.00 1.28
2658 2787 2.413310 AAGAAACGAACGGGCCATAT 57.587 45.000 4.39 0.00 0.00 1.78
2659 2788 3.133362 AGATAAGAAACGAACGGGCCATA 59.867 43.478 4.39 0.00 0.00 2.74
2660 2789 2.093128 AGATAAGAAACGAACGGGCCAT 60.093 45.455 4.39 0.00 0.00 4.40
2661 2790 1.276989 AGATAAGAAACGAACGGGCCA 59.723 47.619 4.39 0.00 0.00 5.36
2662 2791 2.019948 AGATAAGAAACGAACGGGCC 57.980 50.000 0.00 0.00 0.00 5.80
2663 2792 4.511457 GTTAGATAAGAAACGAACGGGC 57.489 45.455 0.00 0.00 0.00 6.13
2680 2809 5.294306 TGCCAGAATCAATCTAAAGCGTTAG 59.706 40.000 12.62 12.62 36.32 2.34
2681 2810 5.182487 TGCCAGAATCAATCTAAAGCGTTA 58.818 37.500 0.00 0.00 36.32 3.18
2682 2811 4.009675 TGCCAGAATCAATCTAAAGCGTT 58.990 39.130 0.00 0.00 36.32 4.84
2683 2812 3.609853 TGCCAGAATCAATCTAAAGCGT 58.390 40.909 0.00 0.00 36.32 5.07
2684 2813 4.621068 TTGCCAGAATCAATCTAAAGCG 57.379 40.909 0.00 0.00 36.32 4.68
2685 2814 6.197842 CGATTTTGCCAGAATCAATCTAAAGC 59.802 38.462 8.48 0.00 36.32 3.51
2686 2815 6.694411 CCGATTTTGCCAGAATCAATCTAAAG 59.306 38.462 8.48 0.00 36.32 1.85
2687 2816 6.563422 CCGATTTTGCCAGAATCAATCTAAA 58.437 36.000 8.48 0.00 36.32 1.85
2688 2817 5.450412 GCCGATTTTGCCAGAATCAATCTAA 60.450 40.000 8.48 0.00 36.32 2.10
2689 2818 4.036734 GCCGATTTTGCCAGAATCAATCTA 59.963 41.667 8.48 0.00 36.32 1.98
2690 2819 3.181483 GCCGATTTTGCCAGAATCAATCT 60.181 43.478 8.48 0.00 39.68 2.40
2691 2820 3.118542 GCCGATTTTGCCAGAATCAATC 58.881 45.455 8.48 0.00 34.02 2.67
2692 2821 2.762327 AGCCGATTTTGCCAGAATCAAT 59.238 40.909 8.48 0.00 34.02 2.57
2693 2822 2.094597 CAGCCGATTTTGCCAGAATCAA 60.095 45.455 8.48 0.00 34.02 2.57
2694 2823 1.473677 CAGCCGATTTTGCCAGAATCA 59.526 47.619 8.48 0.00 34.02 2.57
2695 2824 1.745087 TCAGCCGATTTTGCCAGAATC 59.255 47.619 0.00 0.00 0.00 2.52
2696 2825 1.838112 TCAGCCGATTTTGCCAGAAT 58.162 45.000 0.00 0.00 0.00 2.40
2697 2826 1.745087 GATCAGCCGATTTTGCCAGAA 59.255 47.619 0.00 0.00 29.66 3.02
2698 2827 1.382522 GATCAGCCGATTTTGCCAGA 58.617 50.000 0.00 0.00 29.66 3.86
2699 2828 0.383231 GGATCAGCCGATTTTGCCAG 59.617 55.000 0.00 0.00 29.66 4.85
2700 2829 0.323269 TGGATCAGCCGATTTTGCCA 60.323 50.000 0.00 0.00 40.66 4.92
2701 2830 0.817013 TTGGATCAGCCGATTTTGCC 59.183 50.000 0.00 0.00 40.66 4.52
2702 2831 2.877043 ATTGGATCAGCCGATTTTGC 57.123 45.000 0.00 0.00 37.50 3.68
2703 2832 5.217393 CACATATTGGATCAGCCGATTTTG 58.783 41.667 0.00 0.00 41.29 2.44
2704 2833 4.889409 ACACATATTGGATCAGCCGATTTT 59.111 37.500 0.00 0.00 41.29 1.82
2705 2834 4.464008 ACACATATTGGATCAGCCGATTT 58.536 39.130 0.00 0.00 41.29 2.17
2706 2835 4.090761 ACACATATTGGATCAGCCGATT 57.909 40.909 0.00 0.00 41.29 3.34
2707 2836 3.777106 ACACATATTGGATCAGCCGAT 57.223 42.857 0.00 0.00 43.52 4.18
2708 2837 3.558931 AACACATATTGGATCAGCCGA 57.441 42.857 0.00 0.00 40.66 5.54
2709 2838 4.096231 TGAAAACACATATTGGATCAGCCG 59.904 41.667 0.00 0.00 40.66 5.52
2710 2839 5.126061 ACTGAAAACACATATTGGATCAGCC 59.874 40.000 0.00 0.00 37.04 4.85
2711 2840 6.127925 TGACTGAAAACACATATTGGATCAGC 60.128 38.462 0.00 0.00 37.04 4.26
2712 2841 7.381766 TGACTGAAAACACATATTGGATCAG 57.618 36.000 0.00 0.00 38.37 2.90
2713 2842 7.448161 AGTTGACTGAAAACACATATTGGATCA 59.552 33.333 0.00 0.00 0.00 2.92
2714 2843 7.820648 AGTTGACTGAAAACACATATTGGATC 58.179 34.615 0.00 0.00 0.00 3.36
2715 2844 7.765695 AGTTGACTGAAAACACATATTGGAT 57.234 32.000 0.00 0.00 0.00 3.41
2716 2845 7.068103 ACAAGTTGACTGAAAACACATATTGGA 59.932 33.333 10.54 0.00 0.00 3.53
2717 2846 7.202526 ACAAGTTGACTGAAAACACATATTGG 58.797 34.615 10.54 0.00 0.00 3.16
2718 2847 9.169468 GTACAAGTTGACTGAAAACACATATTG 57.831 33.333 10.54 0.00 0.00 1.90
2719 2848 8.349983 GGTACAAGTTGACTGAAAACACATATT 58.650 33.333 10.54 0.00 0.00 1.28
2720 2849 7.719633 AGGTACAAGTTGACTGAAAACACATAT 59.280 33.333 10.54 0.00 0.00 1.78
2721 2850 7.051623 AGGTACAAGTTGACTGAAAACACATA 58.948 34.615 10.54 0.00 0.00 2.29
2722 2851 5.885912 AGGTACAAGTTGACTGAAAACACAT 59.114 36.000 10.54 0.00 0.00 3.21
2723 2852 5.250200 AGGTACAAGTTGACTGAAAACACA 58.750 37.500 10.54 0.00 0.00 3.72
2724 2853 5.813080 AGGTACAAGTTGACTGAAAACAC 57.187 39.130 10.54 0.00 0.00 3.32
2725 2854 5.526111 GCTAGGTACAAGTTGACTGAAAACA 59.474 40.000 10.54 0.00 0.00 2.83
2726 2855 5.049612 GGCTAGGTACAAGTTGACTGAAAAC 60.050 44.000 10.54 0.00 0.00 2.43
2727 2856 5.061179 GGCTAGGTACAAGTTGACTGAAAA 58.939 41.667 10.54 0.00 0.00 2.29
2728 2857 4.101898 TGGCTAGGTACAAGTTGACTGAAA 59.898 41.667 10.54 0.00 0.00 2.69
2729 2858 3.644265 TGGCTAGGTACAAGTTGACTGAA 59.356 43.478 10.54 0.00 0.00 3.02
2730 2859 3.236047 TGGCTAGGTACAAGTTGACTGA 58.764 45.455 10.54 0.00 0.00 3.41
2731 2860 3.678056 TGGCTAGGTACAAGTTGACTG 57.322 47.619 10.54 2.09 0.00 3.51
2732 2861 4.323562 GGATTGGCTAGGTACAAGTTGACT 60.324 45.833 10.54 7.24 0.00 3.41
2733 2862 3.939592 GGATTGGCTAGGTACAAGTTGAC 59.060 47.826 10.54 3.50 0.00 3.18
2734 2863 3.054655 GGGATTGGCTAGGTACAAGTTGA 60.055 47.826 10.54 0.00 0.00 3.18
2735 2864 3.279434 GGGATTGGCTAGGTACAAGTTG 58.721 50.000 0.00 0.00 0.00 3.16
2736 2865 2.916934 TGGGATTGGCTAGGTACAAGTT 59.083 45.455 0.00 0.00 0.00 2.66
2737 2866 2.557869 TGGGATTGGCTAGGTACAAGT 58.442 47.619 0.00 0.00 0.00 3.16
2738 2867 3.864789 ATGGGATTGGCTAGGTACAAG 57.135 47.619 0.00 0.00 0.00 3.16
2739 2868 4.506625 GCATATGGGATTGGCTAGGTACAA 60.507 45.833 4.56 0.00 0.00 2.41
2740 2869 3.009033 GCATATGGGATTGGCTAGGTACA 59.991 47.826 4.56 0.00 0.00 2.90
2741 2870 3.009033 TGCATATGGGATTGGCTAGGTAC 59.991 47.826 4.56 0.00 0.00 3.34
2742 2871 3.255831 TGCATATGGGATTGGCTAGGTA 58.744 45.455 4.56 0.00 0.00 3.08
2743 2872 2.065007 TGCATATGGGATTGGCTAGGT 58.935 47.619 4.56 0.00 0.00 3.08
2744 2873 2.885135 TGCATATGGGATTGGCTAGG 57.115 50.000 4.56 0.00 0.00 3.02
2745 2874 2.426024 GCATGCATATGGGATTGGCTAG 59.574 50.000 14.21 0.00 34.79 3.42
2746 2875 2.225066 TGCATGCATATGGGATTGGCTA 60.225 45.455 18.46 0.00 34.79 3.93
2747 2876 1.263356 GCATGCATATGGGATTGGCT 58.737 50.000 14.21 0.00 34.79 4.75
2748 2877 0.970640 TGCATGCATATGGGATTGGC 59.029 50.000 18.46 0.00 34.79 4.52
2749 2878 3.973206 ATTGCATGCATATGGGATTGG 57.027 42.857 23.37 0.00 34.79 3.16
2750 2879 4.888917 TCAATTGCATGCATATGGGATTG 58.111 39.130 24.73 24.73 34.79 2.67
2751 2880 5.755409 ATCAATTGCATGCATATGGGATT 57.245 34.783 23.37 14.05 34.79 3.01
2752 2881 5.755409 AATCAATTGCATGCATATGGGAT 57.245 34.783 23.37 18.31 34.79 3.85
2753 2882 5.186215 CCTAATCAATTGCATGCATATGGGA 59.814 40.000 23.37 17.11 34.79 4.37
2754 2883 5.416083 CCTAATCAATTGCATGCATATGGG 58.584 41.667 23.37 14.76 34.79 4.00
2755 2884 5.416083 CCCTAATCAATTGCATGCATATGG 58.584 41.667 23.37 14.89 34.79 2.74
2756 2885 5.416083 CCCCTAATCAATTGCATGCATATG 58.584 41.667 23.37 22.03 37.36 1.78
2757 2886 4.468510 CCCCCTAATCAATTGCATGCATAT 59.531 41.667 23.37 14.69 0.00 1.78
2758 2887 3.833650 CCCCCTAATCAATTGCATGCATA 59.166 43.478 23.37 12.94 0.00 3.14
2759 2888 2.635915 CCCCCTAATCAATTGCATGCAT 59.364 45.455 23.37 7.94 0.00 3.96
2760 2889 2.040939 CCCCCTAATCAATTGCATGCA 58.959 47.619 18.46 18.46 0.00 3.96
2761 2890 2.041701 ACCCCCTAATCAATTGCATGC 58.958 47.619 11.82 11.82 0.00 4.06
2762 2891 8.853126 CATATATACCCCCTAATCAATTGCATG 58.147 37.037 0.00 0.00 0.00 4.06
2763 2892 8.568723 ACATATATACCCCCTAATCAATTGCAT 58.431 33.333 0.00 0.00 0.00 3.96
2764 2893 7.938686 ACATATATACCCCCTAATCAATTGCA 58.061 34.615 0.00 0.00 0.00 4.08
2798 2927 4.145052 GGAGGGAGCTCTCTTTTCAAAAA 58.855 43.478 19.43 0.00 34.39 1.94
2799 2928 3.498661 GGGAGGGAGCTCTCTTTTCAAAA 60.499 47.826 19.43 0.00 34.39 2.44
2800 2929 2.040412 GGGAGGGAGCTCTCTTTTCAAA 59.960 50.000 19.43 0.00 34.39 2.69
2801 2930 1.630878 GGGAGGGAGCTCTCTTTTCAA 59.369 52.381 19.43 0.00 34.39 2.69
2802 2931 1.203364 AGGGAGGGAGCTCTCTTTTCA 60.203 52.381 19.43 0.00 27.84 2.69
2803 2932 1.209261 CAGGGAGGGAGCTCTCTTTTC 59.791 57.143 19.43 10.56 30.49 2.29
2804 2933 1.203364 TCAGGGAGGGAGCTCTCTTTT 60.203 52.381 19.43 3.45 30.49 2.27
2805 2934 0.415429 TCAGGGAGGGAGCTCTCTTT 59.585 55.000 19.43 3.84 30.49 2.52
2806 2935 0.641601 ATCAGGGAGGGAGCTCTCTT 59.358 55.000 19.43 0.00 30.49 2.85
2807 2936 0.641601 AATCAGGGAGGGAGCTCTCT 59.358 55.000 18.34 18.34 33.80 3.10
2808 2937 1.416030 GAAATCAGGGAGGGAGCTCTC 59.584 57.143 14.64 10.30 0.00 3.20
2809 2938 1.506025 GAAATCAGGGAGGGAGCTCT 58.494 55.000 14.64 0.00 0.00 4.09
2810 2939 0.472044 GGAAATCAGGGAGGGAGCTC 59.528 60.000 4.71 4.71 0.00 4.09
2811 2940 0.253347 TGGAAATCAGGGAGGGAGCT 60.253 55.000 0.00 0.00 0.00 4.09
2812 2941 0.849417 ATGGAAATCAGGGAGGGAGC 59.151 55.000 0.00 0.00 0.00 4.70
2813 2942 4.796110 TTAATGGAAATCAGGGAGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
2814 2943 4.793520 TCTTTAATGGAAATCAGGGAGGGA 59.206 41.667 0.00 0.00 0.00 4.20
2815 2944 5.129368 TCTTTAATGGAAATCAGGGAGGG 57.871 43.478 0.00 0.00 0.00 4.30
2816 2945 6.127338 GGTTTCTTTAATGGAAATCAGGGAGG 60.127 42.308 8.76 0.00 34.87 4.30
2817 2946 6.437162 TGGTTTCTTTAATGGAAATCAGGGAG 59.563 38.462 11.10 0.00 38.41 4.30
2818 2947 6.210584 GTGGTTTCTTTAATGGAAATCAGGGA 59.789 38.462 13.93 0.00 42.19 4.20
2819 2948 6.014669 TGTGGTTTCTTTAATGGAAATCAGGG 60.015 38.462 13.93 0.00 42.19 4.45
2820 2949 6.991938 TGTGGTTTCTTTAATGGAAATCAGG 58.008 36.000 13.93 0.00 42.19 3.86
2821 2950 8.928733 CAATGTGGTTTCTTTAATGGAAATCAG 58.071 33.333 13.93 3.91 42.19 2.90
2822 2951 8.428063 ACAATGTGGTTTCTTTAATGGAAATCA 58.572 29.630 11.10 11.10 40.21 2.57
2823 2952 8.831715 ACAATGTGGTTTCTTTAATGGAAATC 57.168 30.769 7.18 7.29 35.55 2.17
2824 2953 8.650490 AGACAATGTGGTTTCTTTAATGGAAAT 58.350 29.630 0.00 0.00 35.55 2.17
2825 2954 8.017418 AGACAATGTGGTTTCTTTAATGGAAA 57.983 30.769 0.00 1.55 0.00 3.13
2826 2955 7.595819 AGACAATGTGGTTTCTTTAATGGAA 57.404 32.000 0.00 0.00 0.00 3.53
2827 2956 7.505585 AGAAGACAATGTGGTTTCTTTAATGGA 59.494 33.333 0.00 0.00 0.00 3.41
2828 2957 7.661040 AGAAGACAATGTGGTTTCTTTAATGG 58.339 34.615 0.00 0.00 0.00 3.16
2831 2960 9.179909 TGTAAGAAGACAATGTGGTTTCTTTAA 57.820 29.630 16.73 7.85 38.58 1.52
2832 2961 8.740123 TGTAAGAAGACAATGTGGTTTCTTTA 57.260 30.769 16.73 8.54 38.58 1.85
2833 2962 7.639113 TGTAAGAAGACAATGTGGTTTCTTT 57.361 32.000 16.73 6.92 38.58 2.52
2834 2963 7.339466 AGTTGTAAGAAGACAATGTGGTTTCTT 59.661 33.333 16.14 16.14 41.21 2.52
2835 2964 6.828785 AGTTGTAAGAAGACAATGTGGTTTCT 59.171 34.615 0.00 0.00 41.21 2.52
2836 2965 7.027778 AGTTGTAAGAAGACAATGTGGTTTC 57.972 36.000 0.00 0.00 41.21 2.78
2837 2966 7.773690 AGTAGTTGTAAGAAGACAATGTGGTTT 59.226 33.333 0.00 0.00 41.21 3.27
2838 2967 7.280356 AGTAGTTGTAAGAAGACAATGTGGTT 58.720 34.615 0.00 0.00 41.21 3.67
2839 2968 6.827727 AGTAGTTGTAAGAAGACAATGTGGT 58.172 36.000 0.00 0.00 41.21 4.16
2840 2969 7.063544 GCTAGTAGTTGTAAGAAGACAATGTGG 59.936 40.741 0.00 0.00 41.21 4.17
2841 2970 7.815068 AGCTAGTAGTTGTAAGAAGACAATGTG 59.185 37.037 0.00 0.00 41.21 3.21
2842 2971 7.897864 AGCTAGTAGTTGTAAGAAGACAATGT 58.102 34.615 0.00 0.00 41.21 2.71
2843 2972 7.489757 GGAGCTAGTAGTTGTAAGAAGACAATG 59.510 40.741 0.00 0.00 41.21 2.82
2844 2973 7.397761 AGGAGCTAGTAGTTGTAAGAAGACAAT 59.602 37.037 0.00 0.00 41.21 2.71
2845 2974 6.720288 AGGAGCTAGTAGTTGTAAGAAGACAA 59.280 38.462 0.00 0.00 36.98 3.18
2846 2975 6.246919 AGGAGCTAGTAGTTGTAAGAAGACA 58.753 40.000 0.00 0.00 0.00 3.41
2847 2976 6.762702 AGGAGCTAGTAGTTGTAAGAAGAC 57.237 41.667 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.