Multiple sequence alignment - TraesCS1D01G406300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G406300 chr1D 100.000 3566 0 0 1 3566 470122830 470126395 0.000000e+00 6586.0
1 TraesCS1D01G406300 chr1D 90.014 1442 122 14 1309 2745 470081044 470082468 0.000000e+00 1845.0
2 TraesCS1D01G406300 chr1D 79.719 1425 240 37 1352 2745 470183979 470185385 0.000000e+00 985.0
3 TraesCS1D01G406300 chr1D 77.778 666 92 36 499 1134 470077059 470077698 3.380000e-95 359.0
4 TraesCS1D01G406300 chr1D 86.937 222 21 7 3000 3217 470082628 470082845 3.560000e-60 243.0
5 TraesCS1D01G406300 chr1D 77.358 318 51 17 811 1125 470123997 470124296 6.120000e-38 169.0
6 TraesCS1D01G406300 chr1B 94.024 3012 114 24 276 3264 652484886 652487854 0.000000e+00 4505.0
7 TraesCS1D01G406300 chr1B 87.738 1313 149 6 1307 2616 652463265 652464568 0.000000e+00 1522.0
8 TraesCS1D01G406300 chr1B 80.789 1343 222 29 1389 2707 652564680 652566010 0.000000e+00 1018.0
9 TraesCS1D01G406300 chr1B 80.648 1297 213 20 1384 2650 652574805 652576093 0.000000e+00 970.0
10 TraesCS1D01G406300 chr1B 78.884 663 82 33 500 1134 652459241 652459873 2.580000e-106 396.0
11 TraesCS1D01G406300 chr1B 93.333 120 8 0 3272 3391 57775477 57775596 1.020000e-40 178.0
12 TraesCS1D01G406300 chr1B 75.633 316 61 9 811 1125 652485742 652486042 3.710000e-30 143.0
13 TraesCS1D01G406300 chr1B 94.231 52 3 0 2512 2563 652577096 652577147 2.950000e-11 80.5
14 TraesCS1D01G406300 chr1A 94.242 2883 115 26 394 3264 563764519 563767362 0.000000e+00 4357.0
15 TraesCS1D01G406300 chr1A 87.128 1546 165 19 1214 2745 563690138 563691663 0.000000e+00 1722.0
16 TraesCS1D01G406300 chr1A 79.873 1421 240 37 1352 2745 563774120 563775521 0.000000e+00 998.0
17 TraesCS1D01G406300 chr1A 76.558 674 85 41 499 1134 563686212 563686850 5.790000e-78 302.0
18 TraesCS1D01G406300 chr2A 94.444 126 7 0 3266 3391 4802193 4802068 1.010000e-45 195.0
19 TraesCS1D01G406300 chr2A 90.840 131 12 0 3261 3391 438722610 438722480 3.660000e-40 176.0
20 TraesCS1D01G406300 chr4B 88.199 161 16 1 3 163 65003102 65002945 4.700000e-44 189.0
21 TraesCS1D01G406300 chr4B 88.199 161 16 1 3 163 65389223 65389066 4.700000e-44 189.0
22 TraesCS1D01G406300 chr4D 92.683 123 9 0 3268 3390 125783651 125783773 1.020000e-40 178.0
23 TraesCS1D01G406300 chr6A 91.270 126 11 0 3266 3391 446298395 446298520 4.730000e-39 172.0
24 TraesCS1D01G406300 chr6A 89.130 138 12 2 3260 3394 21753219 21753082 6.120000e-38 169.0
25 TraesCS1D01G406300 chr5D 91.270 126 11 0 3266 3391 253523068 253523193 4.730000e-39 172.0
26 TraesCS1D01G406300 chr5D 90.000 130 13 0 3262 3391 545219146 545219275 6.120000e-38 169.0
27 TraesCS1D01G406300 chr4A 88.971 136 13 2 3261 3394 37613561 37613426 2.200000e-37 167.0
28 TraesCS1D01G406300 chr4A 100.000 33 0 0 708 740 722381029 722380997 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G406300 chr1D 470122830 470126395 3565 False 3377.500000 6586 88.679000 1 3566 2 chr1D.!!$F3 3565
1 TraesCS1D01G406300 chr1D 470183979 470185385 1406 False 985.000000 985 79.719000 1352 2745 1 chr1D.!!$F1 1393
2 TraesCS1D01G406300 chr1D 470077059 470082845 5786 False 815.666667 1845 84.909667 499 3217 3 chr1D.!!$F2 2718
3 TraesCS1D01G406300 chr1B 652484886 652487854 2968 False 2324.000000 4505 84.828500 276 3264 2 chr1B.!!$F4 2988
4 TraesCS1D01G406300 chr1B 652564680 652566010 1330 False 1018.000000 1018 80.789000 1389 2707 1 chr1B.!!$F2 1318
5 TraesCS1D01G406300 chr1B 652459241 652464568 5327 False 959.000000 1522 83.311000 500 2616 2 chr1B.!!$F3 2116
6 TraesCS1D01G406300 chr1B 652574805 652577147 2342 False 525.250000 970 87.439500 1384 2650 2 chr1B.!!$F5 1266
7 TraesCS1D01G406300 chr1A 563764519 563767362 2843 False 4357.000000 4357 94.242000 394 3264 1 chr1A.!!$F1 2870
8 TraesCS1D01G406300 chr1A 563686212 563691663 5451 False 1012.000000 1722 81.843000 499 2745 2 chr1A.!!$F3 2246
9 TraesCS1D01G406300 chr1A 563774120 563775521 1401 False 998.000000 998 79.873000 1352 2745 1 chr1A.!!$F2 1393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.108138 CACACATCTTCTCGTCCCCC 60.108 60.0 0.00 0.0 0.00 5.40 F
815 838 0.250989 TAGCCCGGGTTCTTGGTTTG 60.251 55.0 24.63 0.0 0.00 2.93 F
978 1042 0.799534 GCGGTTGCTGATGATGTTGC 60.800 55.0 0.00 0.0 38.39 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 4759 1.295423 CCACCACCGTCCCTACAAG 59.705 63.158 0.0 0.0 0.00 3.16 R
2290 5734 1.271163 CCCCACGGTTGACACACTAAT 60.271 52.381 0.0 0.0 0.00 1.73 R
2898 6425 1.623811 ACTTCAGGCGGTTACTGATGT 59.376 47.619 7.8 7.8 43.82 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.840635 AGTCCCACAAGCTTCTATCCC 59.159 52.381 0.00 0.00 0.00 3.85
21 22 1.134068 GTCCCACAAGCTTCTATCCCC 60.134 57.143 0.00 0.00 0.00 4.81
22 23 0.918983 CCCACAAGCTTCTATCCCCA 59.081 55.000 0.00 0.00 0.00 4.96
23 24 1.496429 CCCACAAGCTTCTATCCCCAT 59.504 52.381 0.00 0.00 0.00 4.00
24 25 2.091665 CCCACAAGCTTCTATCCCCATT 60.092 50.000 0.00 0.00 0.00 3.16
25 26 3.138283 CCCACAAGCTTCTATCCCCATTA 59.862 47.826 0.00 0.00 0.00 1.90
26 27 4.392940 CCACAAGCTTCTATCCCCATTAG 58.607 47.826 0.00 0.00 0.00 1.73
27 28 3.817647 CACAAGCTTCTATCCCCATTAGC 59.182 47.826 0.00 0.00 0.00 3.09
28 29 3.718956 ACAAGCTTCTATCCCCATTAGCT 59.281 43.478 0.00 0.00 40.43 3.32
29 30 4.070716 CAAGCTTCTATCCCCATTAGCTG 58.929 47.826 0.00 0.00 38.82 4.24
30 31 2.039613 AGCTTCTATCCCCATTAGCTGC 59.960 50.000 0.00 0.00 37.56 5.25
31 32 2.224621 GCTTCTATCCCCATTAGCTGCA 60.225 50.000 1.02 0.00 0.00 4.41
32 33 3.406764 CTTCTATCCCCATTAGCTGCAC 58.593 50.000 1.02 0.00 0.00 4.57
33 34 2.694397 TCTATCCCCATTAGCTGCACT 58.306 47.619 1.02 0.00 0.00 4.40
34 35 3.856900 TCTATCCCCATTAGCTGCACTA 58.143 45.455 1.02 0.00 0.00 2.74
35 36 2.938956 ATCCCCATTAGCTGCACTAC 57.061 50.000 1.02 0.00 0.00 2.73
36 37 1.879575 TCCCCATTAGCTGCACTACT 58.120 50.000 1.02 0.00 0.00 2.57
37 38 3.040655 TCCCCATTAGCTGCACTACTA 57.959 47.619 1.02 0.00 0.00 1.82
38 39 2.965831 TCCCCATTAGCTGCACTACTAG 59.034 50.000 1.02 0.00 0.00 2.57
39 40 2.965831 CCCCATTAGCTGCACTACTAGA 59.034 50.000 1.02 0.00 0.00 2.43
40 41 3.580458 CCCCATTAGCTGCACTACTAGAT 59.420 47.826 1.02 0.00 0.00 1.98
41 42 4.040952 CCCCATTAGCTGCACTACTAGATT 59.959 45.833 1.02 0.00 0.00 2.40
42 43 4.993584 CCCATTAGCTGCACTACTAGATTG 59.006 45.833 1.02 0.00 0.00 2.67
43 44 4.450419 CCATTAGCTGCACTACTAGATTGC 59.550 45.833 1.02 2.26 36.76 3.56
44 45 2.611225 AGCTGCACTACTAGATTGCC 57.389 50.000 1.02 0.00 35.26 4.52
45 46 1.139853 AGCTGCACTACTAGATTGCCC 59.860 52.381 1.02 0.00 35.26 5.36
46 47 1.134401 GCTGCACTACTAGATTGCCCA 60.134 52.381 0.00 0.00 35.26 5.36
47 48 2.555199 CTGCACTACTAGATTGCCCAC 58.445 52.381 0.00 0.00 35.26 4.61
48 49 1.209504 TGCACTACTAGATTGCCCACC 59.790 52.381 0.00 0.00 35.26 4.61
49 50 1.486726 GCACTACTAGATTGCCCACCT 59.513 52.381 0.00 0.00 0.00 4.00
50 51 2.092914 GCACTACTAGATTGCCCACCTT 60.093 50.000 0.00 0.00 0.00 3.50
51 52 3.798202 CACTACTAGATTGCCCACCTTC 58.202 50.000 0.00 0.00 0.00 3.46
52 53 3.197766 CACTACTAGATTGCCCACCTTCA 59.802 47.826 0.00 0.00 0.00 3.02
53 54 4.040755 ACTACTAGATTGCCCACCTTCAT 58.959 43.478 0.00 0.00 0.00 2.57
54 55 3.567478 ACTAGATTGCCCACCTTCATC 57.433 47.619 0.00 0.00 0.00 2.92
55 56 3.118531 ACTAGATTGCCCACCTTCATCT 58.881 45.455 0.00 0.00 0.00 2.90
56 57 3.525199 ACTAGATTGCCCACCTTCATCTT 59.475 43.478 0.00 0.00 0.00 2.40
57 58 3.463048 AGATTGCCCACCTTCATCTTT 57.537 42.857 0.00 0.00 0.00 2.52
58 59 3.782992 AGATTGCCCACCTTCATCTTTT 58.217 40.909 0.00 0.00 0.00 2.27
59 60 4.162651 AGATTGCCCACCTTCATCTTTTT 58.837 39.130 0.00 0.00 0.00 1.94
84 85 8.760980 TTTTTCTCCTTTAGAGTGATTCCAAA 57.239 30.769 0.00 0.00 43.71 3.28
85 86 8.760980 TTTTCTCCTTTAGAGTGATTCCAAAA 57.239 30.769 0.00 0.00 43.71 2.44
86 87 8.940397 TTTCTCCTTTAGAGTGATTCCAAAAT 57.060 30.769 0.00 0.00 43.71 1.82
87 88 8.940397 TTCTCCTTTAGAGTGATTCCAAAATT 57.060 30.769 0.00 0.00 43.71 1.82
96 97 8.281212 AGAGTGATTCCAAAATTATACACACC 57.719 34.615 0.00 0.00 0.00 4.16
97 98 8.109634 AGAGTGATTCCAAAATTATACACACCT 58.890 33.333 0.00 0.00 0.00 4.00
98 99 8.650143 AGTGATTCCAAAATTATACACACCTT 57.350 30.769 0.00 0.00 0.00 3.50
99 100 9.088987 AGTGATTCCAAAATTATACACACCTTT 57.911 29.630 0.00 0.00 0.00 3.11
105 106 9.575868 TCCAAAATTATACACACCTTTAACTGA 57.424 29.630 0.00 0.00 0.00 3.41
106 107 9.840427 CCAAAATTATACACACCTTTAACTGAG 57.160 33.333 0.00 0.00 0.00 3.35
110 111 9.787435 AATTATACACACCTTTAACTGAGAACA 57.213 29.630 0.00 0.00 0.00 3.18
111 112 9.959721 ATTATACACACCTTTAACTGAGAACAT 57.040 29.630 0.00 0.00 0.00 2.71
113 114 8.773404 ATACACACCTTTAACTGAGAACATAC 57.227 34.615 0.00 0.00 0.00 2.39
114 115 5.995897 ACACACCTTTAACTGAGAACATACC 59.004 40.000 0.00 0.00 0.00 2.73
115 116 5.995282 CACACCTTTAACTGAGAACATACCA 59.005 40.000 0.00 0.00 0.00 3.25
116 117 6.655003 CACACCTTTAACTGAGAACATACCAT 59.345 38.462 0.00 0.00 0.00 3.55
117 118 7.174946 CACACCTTTAACTGAGAACATACCATT 59.825 37.037 0.00 0.00 0.00 3.16
118 119 7.390718 ACACCTTTAACTGAGAACATACCATTC 59.609 37.037 0.00 0.00 0.00 2.67
119 120 7.607991 CACCTTTAACTGAGAACATACCATTCT 59.392 37.037 0.00 0.00 39.15 2.40
120 121 8.164070 ACCTTTAACTGAGAACATACCATTCTT 58.836 33.333 0.00 0.00 36.53 2.52
121 122 8.669243 CCTTTAACTGAGAACATACCATTCTTC 58.331 37.037 0.00 0.00 36.53 2.87
122 123 9.442047 CTTTAACTGAGAACATACCATTCTTCT 57.558 33.333 0.00 0.00 36.53 2.85
123 124 9.436957 TTTAACTGAGAACATACCATTCTTCTC 57.563 33.333 0.00 0.00 39.33 2.87
124 125 6.611613 ACTGAGAACATACCATTCTTCTCA 57.388 37.500 8.30 8.30 44.00 3.27
125 126 7.009179 ACTGAGAACATACCATTCTTCTCAA 57.991 36.000 9.55 0.00 44.96 3.02
126 127 7.453393 ACTGAGAACATACCATTCTTCTCAAA 58.547 34.615 9.55 0.00 44.96 2.69
127 128 7.939039 ACTGAGAACATACCATTCTTCTCAAAA 59.061 33.333 9.55 0.00 44.96 2.44
128 129 8.868522 TGAGAACATACCATTCTTCTCAAAAT 57.131 30.769 6.50 0.00 43.52 1.82
129 130 8.733458 TGAGAACATACCATTCTTCTCAAAATG 58.267 33.333 6.50 0.00 43.52 2.32
130 131 7.542025 AGAACATACCATTCTTCTCAAAATGC 58.458 34.615 0.00 0.00 32.32 3.56
131 132 6.212888 ACATACCATTCTTCTCAAAATGCC 57.787 37.500 0.00 0.00 32.65 4.40
132 133 5.716228 ACATACCATTCTTCTCAAAATGCCA 59.284 36.000 0.00 0.00 32.65 4.92
133 134 6.211184 ACATACCATTCTTCTCAAAATGCCAA 59.789 34.615 0.00 0.00 32.65 4.52
134 135 5.143376 ACCATTCTTCTCAAAATGCCAAG 57.857 39.130 0.00 0.00 32.65 3.61
135 136 3.930848 CCATTCTTCTCAAAATGCCAAGC 59.069 43.478 0.00 0.00 32.65 4.01
136 137 4.561938 CCATTCTTCTCAAAATGCCAAGCA 60.562 41.667 0.00 0.00 44.86 3.91
137 138 4.669206 TTCTTCTCAAAATGCCAAGCAA 57.331 36.364 0.00 0.00 43.62 3.91
138 139 4.877378 TCTTCTCAAAATGCCAAGCAAT 57.123 36.364 0.00 0.00 43.62 3.56
139 140 4.562082 TCTTCTCAAAATGCCAAGCAATG 58.438 39.130 0.00 0.00 43.62 2.82
140 141 2.690786 TCTCAAAATGCCAAGCAATGC 58.309 42.857 0.00 0.00 43.62 3.56
141 142 2.037381 TCTCAAAATGCCAAGCAATGCA 59.963 40.909 8.35 0.00 43.62 3.96
142 143 2.415168 CTCAAAATGCCAAGCAATGCAG 59.585 45.455 8.35 0.00 43.62 4.41
143 144 2.147958 CAAAATGCCAAGCAATGCAGT 58.852 42.857 8.35 0.00 43.62 4.40
144 145 2.088950 AAATGCCAAGCAATGCAGTC 57.911 45.000 8.35 0.00 43.62 3.51
145 146 1.263356 AATGCCAAGCAATGCAGTCT 58.737 45.000 8.35 0.00 43.62 3.24
146 147 0.815734 ATGCCAAGCAATGCAGTCTC 59.184 50.000 8.35 0.00 43.62 3.36
147 148 1.246056 TGCCAAGCAATGCAGTCTCC 61.246 55.000 8.35 0.00 34.76 3.71
148 149 0.964358 GCCAAGCAATGCAGTCTCCT 60.964 55.000 8.35 0.00 0.00 3.69
149 150 1.542492 CCAAGCAATGCAGTCTCCTT 58.458 50.000 8.35 0.00 0.00 3.36
150 151 1.471684 CCAAGCAATGCAGTCTCCTTC 59.528 52.381 8.35 0.00 0.00 3.46
151 152 2.434428 CAAGCAATGCAGTCTCCTTCT 58.566 47.619 8.35 0.00 0.00 2.85
152 153 2.399916 AGCAATGCAGTCTCCTTCTC 57.600 50.000 8.35 0.00 0.00 2.87
153 154 1.065564 AGCAATGCAGTCTCCTTCTCC 60.066 52.381 8.35 0.00 0.00 3.71
154 155 2.016096 GCAATGCAGTCTCCTTCTCCC 61.016 57.143 0.00 0.00 0.00 4.30
155 156 0.539051 AATGCAGTCTCCTTCTCCCG 59.461 55.000 0.00 0.00 0.00 5.14
156 157 0.324738 ATGCAGTCTCCTTCTCCCGA 60.325 55.000 0.00 0.00 0.00 5.14
157 158 0.541998 TGCAGTCTCCTTCTCCCGAA 60.542 55.000 0.00 0.00 0.00 4.30
158 159 0.174617 GCAGTCTCCTTCTCCCGAAG 59.825 60.000 0.00 0.00 45.00 3.79
159 160 0.174617 CAGTCTCCTTCTCCCGAAGC 59.825 60.000 0.00 0.00 44.24 3.86
160 161 0.973496 AGTCTCCTTCTCCCGAAGCC 60.973 60.000 0.00 0.00 44.24 4.35
161 162 0.973496 GTCTCCTTCTCCCGAAGCCT 60.973 60.000 0.00 0.00 44.24 4.58
162 163 0.972983 TCTCCTTCTCCCGAAGCCTG 60.973 60.000 0.00 0.00 44.24 4.85
163 164 1.965754 CTCCTTCTCCCGAAGCCTGG 61.966 65.000 0.00 0.00 44.24 4.45
169 170 3.721868 CCCGAAGCCTGGGTAGAA 58.278 61.111 0.00 0.00 42.07 2.10
170 171 1.988015 CCCGAAGCCTGGGTAGAAA 59.012 57.895 0.00 0.00 42.07 2.52
171 172 0.326927 CCCGAAGCCTGGGTAGAAAA 59.673 55.000 0.00 0.00 42.07 2.29
172 173 1.679032 CCCGAAGCCTGGGTAGAAAAG 60.679 57.143 0.00 0.00 42.07 2.27
173 174 1.278127 CCGAAGCCTGGGTAGAAAAGA 59.722 52.381 0.00 0.00 0.00 2.52
174 175 2.622436 CGAAGCCTGGGTAGAAAAGAG 58.378 52.381 0.00 0.00 0.00 2.85
175 176 2.233922 CGAAGCCTGGGTAGAAAAGAGA 59.766 50.000 0.00 0.00 0.00 3.10
176 177 3.601435 GAAGCCTGGGTAGAAAAGAGAC 58.399 50.000 0.00 0.00 0.00 3.36
177 178 2.909217 AGCCTGGGTAGAAAAGAGACT 58.091 47.619 0.00 0.00 0.00 3.24
178 179 3.252351 AGCCTGGGTAGAAAAGAGACTT 58.748 45.455 0.00 0.00 0.00 3.01
179 180 3.008485 AGCCTGGGTAGAAAAGAGACTTG 59.992 47.826 0.00 0.00 0.00 3.16
180 181 3.008049 GCCTGGGTAGAAAAGAGACTTGA 59.992 47.826 0.00 0.00 0.00 3.02
181 182 4.323868 GCCTGGGTAGAAAAGAGACTTGAT 60.324 45.833 0.00 0.00 0.00 2.57
182 183 5.423886 CCTGGGTAGAAAAGAGACTTGATC 58.576 45.833 0.00 0.00 0.00 2.92
183 184 5.046304 CCTGGGTAGAAAAGAGACTTGATCA 60.046 44.000 0.00 0.00 0.00 2.92
184 185 6.433847 TGGGTAGAAAAGAGACTTGATCAA 57.566 37.500 8.12 8.12 0.00 2.57
185 186 6.467677 TGGGTAGAAAAGAGACTTGATCAAG 58.532 40.000 29.74 29.74 43.79 3.02
200 201 7.848716 CTTGATCAAGTTTTCACACATCTTC 57.151 36.000 24.65 0.00 33.87 2.87
201 202 7.572523 TTGATCAAGTTTTCACACATCTTCT 57.427 32.000 3.38 0.00 0.00 2.85
202 203 7.194607 TGATCAAGTTTTCACACATCTTCTC 57.805 36.000 0.00 0.00 0.00 2.87
203 204 5.657470 TCAAGTTTTCACACATCTTCTCG 57.343 39.130 0.00 0.00 0.00 4.04
204 205 5.116180 TCAAGTTTTCACACATCTTCTCGT 58.884 37.500 0.00 0.00 0.00 4.18
205 206 5.234329 TCAAGTTTTCACACATCTTCTCGTC 59.766 40.000 0.00 0.00 0.00 4.20
206 207 4.058817 AGTTTTCACACATCTTCTCGTCC 58.941 43.478 0.00 0.00 0.00 4.79
207 208 2.743636 TTCACACATCTTCTCGTCCC 57.256 50.000 0.00 0.00 0.00 4.46
208 209 0.895530 TCACACATCTTCTCGTCCCC 59.104 55.000 0.00 0.00 0.00 4.81
209 210 0.108138 CACACATCTTCTCGTCCCCC 60.108 60.000 0.00 0.00 0.00 5.40
210 211 1.141881 CACATCTTCTCGTCCCCCG 59.858 63.158 0.00 0.00 38.13 5.73
211 212 1.000019 ACATCTTCTCGTCCCCCGA 60.000 57.895 0.00 0.00 45.00 5.14
221 222 3.464111 TCGTCCCCCGAGAAATAAATC 57.536 47.619 0.00 0.00 41.60 2.17
222 223 2.767394 TCGTCCCCCGAGAAATAAATCA 59.233 45.455 0.00 0.00 41.60 2.57
223 224 3.198200 TCGTCCCCCGAGAAATAAATCAA 59.802 43.478 0.00 0.00 41.60 2.57
224 225 3.942748 CGTCCCCCGAGAAATAAATCAAA 59.057 43.478 0.00 0.00 39.56 2.69
225 226 4.201881 CGTCCCCCGAGAAATAAATCAAAC 60.202 45.833 0.00 0.00 39.56 2.93
226 227 4.703093 GTCCCCCGAGAAATAAATCAAACA 59.297 41.667 0.00 0.00 0.00 2.83
227 228 4.703093 TCCCCCGAGAAATAAATCAAACAC 59.297 41.667 0.00 0.00 0.00 3.32
228 229 4.142249 CCCCCGAGAAATAAATCAAACACC 60.142 45.833 0.00 0.00 0.00 4.16
229 230 4.142249 CCCCGAGAAATAAATCAAACACCC 60.142 45.833 0.00 0.00 0.00 4.61
230 231 4.461081 CCCGAGAAATAAATCAAACACCCA 59.539 41.667 0.00 0.00 0.00 4.51
231 232 5.127031 CCCGAGAAATAAATCAAACACCCAT 59.873 40.000 0.00 0.00 0.00 4.00
232 233 6.350949 CCCGAGAAATAAATCAAACACCCATT 60.351 38.462 0.00 0.00 0.00 3.16
233 234 7.096551 CCGAGAAATAAATCAAACACCCATTT 58.903 34.615 0.00 0.00 0.00 2.32
234 235 7.275560 CCGAGAAATAAATCAAACACCCATTTC 59.724 37.037 0.00 0.00 33.28 2.17
235 236 7.812191 CGAGAAATAAATCAAACACCCATTTCA 59.188 33.333 0.00 0.00 34.76 2.69
236 237 9.143631 GAGAAATAAATCAAACACCCATTTCAG 57.856 33.333 0.00 0.00 34.76 3.02
237 238 8.650490 AGAAATAAATCAAACACCCATTTCAGT 58.350 29.630 0.00 0.00 34.76 3.41
238 239 8.831715 AAATAAATCAAACACCCATTTCAGTC 57.168 30.769 0.00 0.00 0.00 3.51
239 240 7.781324 ATAAATCAAACACCCATTTCAGTCT 57.219 32.000 0.00 0.00 0.00 3.24
240 241 8.877864 ATAAATCAAACACCCATTTCAGTCTA 57.122 30.769 0.00 0.00 0.00 2.59
241 242 6.824305 AATCAAACACCCATTTCAGTCTAG 57.176 37.500 0.00 0.00 0.00 2.43
242 243 5.304686 TCAAACACCCATTTCAGTCTAGT 57.695 39.130 0.00 0.00 0.00 2.57
243 244 5.690865 TCAAACACCCATTTCAGTCTAGTT 58.309 37.500 0.00 0.00 0.00 2.24
244 245 5.763204 TCAAACACCCATTTCAGTCTAGTTC 59.237 40.000 0.00 0.00 0.00 3.01
245 246 5.568620 AACACCCATTTCAGTCTAGTTCT 57.431 39.130 0.00 0.00 0.00 3.01
246 247 4.899502 ACACCCATTTCAGTCTAGTTCTG 58.100 43.478 10.03 10.03 0.00 3.02
247 248 4.348168 ACACCCATTTCAGTCTAGTTCTGT 59.652 41.667 13.93 0.00 34.86 3.41
248 249 5.163195 ACACCCATTTCAGTCTAGTTCTGTT 60.163 40.000 13.93 3.08 34.86 3.16
249 250 5.765182 CACCCATTTCAGTCTAGTTCTGTTT 59.235 40.000 13.93 2.84 34.86 2.83
250 251 6.263168 CACCCATTTCAGTCTAGTTCTGTTTT 59.737 38.462 13.93 2.60 34.86 2.43
251 252 6.833933 ACCCATTTCAGTCTAGTTCTGTTTTT 59.166 34.615 13.93 1.38 34.86 1.94
252 253 7.013369 ACCCATTTCAGTCTAGTTCTGTTTTTC 59.987 37.037 13.93 0.00 34.86 2.29
253 254 7.229506 CCCATTTCAGTCTAGTTCTGTTTTTCT 59.770 37.037 13.93 0.00 34.86 2.52
254 255 8.624776 CCATTTCAGTCTAGTTCTGTTTTTCTT 58.375 33.333 13.93 0.00 34.86 2.52
257 258 7.948278 TCAGTCTAGTTCTGTTTTTCTTAGC 57.052 36.000 13.93 0.00 34.86 3.09
258 259 7.727181 TCAGTCTAGTTCTGTTTTTCTTAGCT 58.273 34.615 13.93 0.00 34.86 3.32
259 260 7.653713 TCAGTCTAGTTCTGTTTTTCTTAGCTG 59.346 37.037 0.00 0.00 34.86 4.24
260 261 7.653713 CAGTCTAGTTCTGTTTTTCTTAGCTGA 59.346 37.037 0.00 0.00 0.00 4.26
261 262 8.204836 AGTCTAGTTCTGTTTTTCTTAGCTGAA 58.795 33.333 0.00 0.00 0.00 3.02
262 263 8.827677 GTCTAGTTCTGTTTTTCTTAGCTGAAA 58.172 33.333 0.00 0.00 34.55 2.69
263 264 9.561069 TCTAGTTCTGTTTTTCTTAGCTGAAAT 57.439 29.630 0.00 0.00 36.07 2.17
266 267 9.875691 AGTTCTGTTTTTCTTAGCTGAAATTTT 57.124 25.926 0.00 0.00 36.07 1.82
269 270 9.965824 TCTGTTTTTCTTAGCTGAAATTTTAGG 57.034 29.630 11.53 0.00 36.07 2.69
270 271 9.196552 CTGTTTTTCTTAGCTGAAATTTTAGGG 57.803 33.333 11.53 0.00 36.07 3.53
271 272 7.655732 TGTTTTTCTTAGCTGAAATTTTAGGGC 59.344 33.333 11.53 5.14 36.07 5.19
272 273 5.914898 TTCTTAGCTGAAATTTTAGGGCC 57.085 39.130 11.53 0.00 0.00 5.80
273 274 5.193099 TCTTAGCTGAAATTTTAGGGCCT 57.807 39.130 12.58 12.58 0.00 5.19
274 275 4.949856 TCTTAGCTGAAATTTTAGGGCCTG 59.050 41.667 18.53 0.00 0.00 4.85
368 370 1.893335 CATCGATGCATCCCCGCAA 60.893 57.895 20.87 0.52 46.87 4.85
438 442 0.898326 TTCTGTAGGACGCCAGCTCA 60.898 55.000 0.00 0.00 0.00 4.26
461 465 1.192146 AACCTCCTCTTGCCTGCGTA 61.192 55.000 0.00 0.00 0.00 4.42
517 521 1.819903 GACACTCCACTCTACTCCACC 59.180 57.143 0.00 0.00 0.00 4.61
660 681 4.554036 GCTCGGAGGGGCATGGAC 62.554 72.222 7.20 0.00 0.00 4.02
697 718 3.637273 GGTGTTCCTCCCCACGCT 61.637 66.667 0.00 0.00 32.30 5.07
815 838 0.250989 TAGCCCGGGTTCTTGGTTTG 60.251 55.000 24.63 0.00 0.00 2.93
957 1011 3.081804 GGTTGATGTTCGATGAAAGGGT 58.918 45.455 0.00 0.00 0.00 4.34
964 1028 0.899720 TCGATGAAAGGGTAGCGGTT 59.100 50.000 0.00 0.00 0.00 4.44
978 1042 0.799534 GCGGTTGCTGATGATGTTGC 60.800 55.000 0.00 0.00 38.39 4.17
1302 4728 1.536766 CTGCAATGTTGGAAAGCGAGA 59.463 47.619 0.00 0.00 0.00 4.04
1478 4904 2.356313 CTTCGCGTCAGTGTGCCT 60.356 61.111 5.77 0.00 0.00 4.75
2007 5442 0.834687 TCTACGCCCTCACCAAAGGT 60.835 55.000 0.00 0.00 35.62 3.50
2044 5479 1.337728 TGAACATCAGCGACGACCATT 60.338 47.619 0.00 0.00 0.00 3.16
2203 5644 0.888736 CAGGACAATTGTGTGCCGGA 60.889 55.000 17.58 0.00 46.69 5.14
2290 5734 1.202758 ACTTTGAGCATTCACGGTGGA 60.203 47.619 8.50 0.00 31.71 4.02
2292 5736 2.198827 TTGAGCATTCACGGTGGATT 57.801 45.000 8.50 0.00 31.71 3.01
2301 5745 1.964933 TCACGGTGGATTAGTGTGTCA 59.035 47.619 8.50 0.00 37.20 3.58
2406 5856 4.377839 TCAGATCTCGTTCTTGGATGAC 57.622 45.455 0.00 0.00 0.00 3.06
2847 6374 1.010125 CCGTGGTTGTTTCTGTGCG 60.010 57.895 0.00 0.00 0.00 5.34
2898 6425 3.578716 AGGTTACTCTGTTAGCTGCAGAA 59.421 43.478 20.43 0.00 41.74 3.02
2908 6435 4.690748 TGTTAGCTGCAGAACATCAGTAAC 59.309 41.667 20.43 10.80 33.12 2.50
2911 6438 1.394917 CTGCAGAACATCAGTAACCGC 59.605 52.381 8.42 0.00 0.00 5.68
2982 6510 1.164041 ACTAGTGCCGTGGTTGTTGC 61.164 55.000 0.00 0.00 0.00 4.17
3051 6614 7.092399 ACTCCCTATAGTGGTAGATTTGCTTTT 60.092 37.037 0.00 0.00 0.00 2.27
3117 6680 7.424803 TGTGGTTTGAACACATATTTCAAGAG 58.575 34.615 0.00 0.00 43.35 2.85
3184 7049 1.078709 CAGTGGAACATGTGCGTAGG 58.921 55.000 0.00 0.00 44.52 3.18
3264 7132 2.663826 TTGCGTGAGGTTTGCTTTTT 57.336 40.000 0.00 0.00 0.00 1.94
3286 7154 7.622893 TTTTTGGGCTTTTATCATTTATGCC 57.377 32.000 0.00 0.00 38.28 4.40
3287 7155 5.946942 TTGGGCTTTTATCATTTATGCCA 57.053 34.783 0.00 0.00 40.51 4.92
3288 7156 5.275067 TGGGCTTTTATCATTTATGCCAC 57.725 39.130 0.00 0.00 40.51 5.01
3290 7158 6.132658 TGGGCTTTTATCATTTATGCCACTA 58.867 36.000 0.00 0.00 40.51 2.74
3291 7159 6.265196 TGGGCTTTTATCATTTATGCCACTAG 59.735 38.462 0.00 0.00 40.51 2.57
3292 7160 6.265422 GGGCTTTTATCATTTATGCCACTAGT 59.735 38.462 0.00 0.00 40.51 2.57
3293 7161 7.201911 GGGCTTTTATCATTTATGCCACTAGTT 60.202 37.037 0.00 0.00 40.51 2.24
3294 7162 7.649306 GGCTTTTATCATTTATGCCACTAGTTG 59.351 37.037 0.00 0.00 38.79 3.16
3295 7163 8.190784 GCTTTTATCATTTATGCCACTAGTTGT 58.809 33.333 0.00 0.00 0.00 3.32
3296 7164 9.507280 CTTTTATCATTTATGCCACTAGTTGTG 57.493 33.333 0.00 0.00 45.80 3.33
3298 7166 6.683974 ATCATTTATGCCACTAGTTGTGTC 57.316 37.500 4.03 0.00 44.81 3.67
3299 7167 4.941263 TCATTTATGCCACTAGTTGTGTCC 59.059 41.667 4.03 0.00 44.81 4.02
3300 7168 3.343941 TTATGCCACTAGTTGTGTCCC 57.656 47.619 4.03 0.00 44.81 4.46
3301 7169 1.064003 ATGCCACTAGTTGTGTCCCA 58.936 50.000 4.03 0.00 44.81 4.37
3302 7170 0.107831 TGCCACTAGTTGTGTCCCAC 59.892 55.000 4.03 0.00 44.81 4.61
3303 7171 0.396811 GCCACTAGTTGTGTCCCACT 59.603 55.000 4.03 0.00 44.81 4.00
3305 7173 2.612221 GCCACTAGTTGTGTCCCACTAC 60.612 54.545 4.03 1.52 44.81 2.73
3307 7175 3.056749 CCACTAGTTGTGTCCCACTACTC 60.057 52.174 13.30 0.00 44.27 2.59
3308 7176 3.572682 CACTAGTTGTGTCCCACTACTCA 59.427 47.826 13.30 2.84 44.27 3.41
3309 7177 3.827302 ACTAGTTGTGTCCCACTACTCAG 59.173 47.826 13.30 11.63 44.27 3.35
3310 7178 2.679082 AGTTGTGTCCCACTACTCAGT 58.321 47.619 5.79 0.00 44.27 3.41
3311 7179 3.039011 AGTTGTGTCCCACTACTCAGTT 58.961 45.455 5.79 0.00 44.27 3.16
3312 7180 3.454812 AGTTGTGTCCCACTACTCAGTTT 59.545 43.478 5.79 0.00 44.27 2.66
3313 7181 4.080526 AGTTGTGTCCCACTACTCAGTTTT 60.081 41.667 5.79 0.00 44.27 2.43
3314 7182 3.804036 TGTGTCCCACTACTCAGTTTTG 58.196 45.455 0.00 0.00 35.11 2.44
3315 7183 2.548480 GTGTCCCACTACTCAGTTTTGC 59.452 50.000 0.00 0.00 30.46 3.68
3316 7184 2.152016 GTCCCACTACTCAGTTTTGCC 58.848 52.381 0.00 0.00 30.46 4.52
3317 7185 1.771854 TCCCACTACTCAGTTTTGCCA 59.228 47.619 0.00 0.00 30.46 4.92
3318 7186 1.880027 CCCACTACTCAGTTTTGCCAC 59.120 52.381 0.00 0.00 30.46 5.01
3319 7187 2.487265 CCCACTACTCAGTTTTGCCACT 60.487 50.000 0.00 0.00 30.46 4.00
3320 7188 3.244422 CCCACTACTCAGTTTTGCCACTA 60.244 47.826 0.00 0.00 30.46 2.74
3322 7190 4.377021 CACTACTCAGTTTTGCCACTACA 58.623 43.478 0.00 0.00 30.46 2.74
3323 7191 4.814234 CACTACTCAGTTTTGCCACTACAA 59.186 41.667 0.00 0.00 30.46 2.41
3324 7192 5.295787 CACTACTCAGTTTTGCCACTACAAA 59.704 40.000 0.00 0.00 37.74 2.83
3326 7194 5.852282 ACTCAGTTTTGCCACTACAAATT 57.148 34.783 0.00 0.00 39.18 1.82
3327 7195 6.220726 ACTCAGTTTTGCCACTACAAATTT 57.779 33.333 0.00 0.00 39.18 1.82
3328 7196 6.273071 ACTCAGTTTTGCCACTACAAATTTC 58.727 36.000 0.00 0.00 39.18 2.17
3329 7197 6.127479 ACTCAGTTTTGCCACTACAAATTTCA 60.127 34.615 0.00 0.00 39.18 2.69
3330 7198 6.634805 TCAGTTTTGCCACTACAAATTTCAA 58.365 32.000 0.00 0.00 39.18 2.69
3331 7199 6.533367 TCAGTTTTGCCACTACAAATTTCAAC 59.467 34.615 0.00 0.00 39.18 3.18
3332 7200 6.534793 CAGTTTTGCCACTACAAATTTCAACT 59.465 34.615 0.00 0.00 39.18 3.16
3333 7201 6.534793 AGTTTTGCCACTACAAATTTCAACTG 59.465 34.615 0.00 0.00 39.18 3.16
3334 7202 3.976169 TGCCACTACAAATTTCAACTGC 58.024 40.909 0.00 0.00 0.00 4.40
3335 7203 3.636300 TGCCACTACAAATTTCAACTGCT 59.364 39.130 0.00 0.00 0.00 4.24
3336 7204 4.229876 GCCACTACAAATTTCAACTGCTC 58.770 43.478 0.00 0.00 0.00 4.26
3337 7205 4.261572 GCCACTACAAATTTCAACTGCTCA 60.262 41.667 0.00 0.00 0.00 4.26
3338 7206 5.735922 GCCACTACAAATTTCAACTGCTCAA 60.736 40.000 0.00 0.00 0.00 3.02
3340 7208 6.756074 CCACTACAAATTTCAACTGCTCAAAA 59.244 34.615 0.00 0.00 0.00 2.44
3341 7209 7.277539 CCACTACAAATTTCAACTGCTCAAAAA 59.722 33.333 0.00 0.00 0.00 1.94
3342 7210 8.819974 CACTACAAATTTCAACTGCTCAAAAAT 58.180 29.630 0.00 0.00 0.00 1.82
3344 7212 6.488817 ACAAATTTCAACTGCTCAAAAATGC 58.511 32.000 0.00 0.00 0.00 3.56
3345 7213 5.678132 AATTTCAACTGCTCAAAAATGCC 57.322 34.783 0.00 0.00 0.00 4.40
3347 7215 4.339872 TTCAACTGCTCAAAAATGCCAT 57.660 36.364 0.00 0.00 0.00 4.40
3348 7216 3.916761 TCAACTGCTCAAAAATGCCATC 58.083 40.909 0.00 0.00 0.00 3.51
3349 7217 2.642139 ACTGCTCAAAAATGCCATCG 57.358 45.000 0.00 0.00 0.00 3.84
3350 7218 1.274596 CTGCTCAAAAATGCCATCGC 58.725 50.000 0.00 0.00 0.00 4.58
3353 7221 1.922545 GCTCAAAAATGCCATCGCTTC 59.077 47.619 0.00 0.00 35.36 3.86
3354 7222 2.416431 GCTCAAAAATGCCATCGCTTCT 60.416 45.455 0.00 0.00 35.36 2.85
3355 7223 3.841643 CTCAAAAATGCCATCGCTTCTT 58.158 40.909 0.00 0.00 35.36 2.52
3356 7224 4.240096 CTCAAAAATGCCATCGCTTCTTT 58.760 39.130 0.00 0.00 35.36 2.52
3357 7225 5.384063 TCAAAAATGCCATCGCTTCTTTA 57.616 34.783 0.00 0.00 35.36 1.85
3358 7226 5.401550 TCAAAAATGCCATCGCTTCTTTAG 58.598 37.500 0.00 0.00 35.36 1.85
3359 7227 4.376340 AAAATGCCATCGCTTCTTTAGG 57.624 40.909 0.00 0.00 35.36 2.69
3360 7228 1.312815 ATGCCATCGCTTCTTTAGGC 58.687 50.000 0.00 0.00 42.32 3.93
3365 7233 4.983090 CGCTTCTTTAGGCGCATG 57.017 55.556 10.83 0.00 44.64 4.06
3366 7234 1.297893 CGCTTCTTTAGGCGCATGC 60.298 57.895 10.83 7.91 44.64 4.06
3367 7235 1.709147 CGCTTCTTTAGGCGCATGCT 61.709 55.000 17.13 0.00 44.64 3.79
3368 7236 0.028637 GCTTCTTTAGGCGCATGCTC 59.971 55.000 17.13 7.82 42.25 4.26
3369 7237 1.372582 CTTCTTTAGGCGCATGCTCA 58.627 50.000 17.13 0.00 42.25 4.26
3370 7238 1.739466 CTTCTTTAGGCGCATGCTCAA 59.261 47.619 17.13 1.08 42.25 3.02
3371 7239 1.819928 TCTTTAGGCGCATGCTCAAA 58.180 45.000 17.13 9.04 42.25 2.69
3372 7240 2.158559 TCTTTAGGCGCATGCTCAAAA 58.841 42.857 17.13 11.09 42.25 2.44
3373 7241 2.556189 TCTTTAGGCGCATGCTCAAAAA 59.444 40.909 17.13 10.75 42.25 1.94
3374 7242 3.193267 TCTTTAGGCGCATGCTCAAAAAT 59.807 39.130 17.13 0.00 42.25 1.82
3375 7243 2.565210 TAGGCGCATGCTCAAAAATG 57.435 45.000 17.13 0.00 42.25 2.32
3376 7244 0.738412 AGGCGCATGCTCAAAAATGC 60.738 50.000 17.13 8.76 44.61 3.56
3377 7245 1.698714 GGCGCATGCTCAAAAATGCC 61.699 55.000 17.13 14.36 45.13 4.40
3378 7246 1.015085 GCGCATGCTCAAAAATGCCA 61.015 50.000 17.13 0.00 45.13 4.92
3379 7247 0.717224 CGCATGCTCAAAAATGCCAC 59.283 50.000 17.13 0.00 45.13 5.01
3380 7248 1.081094 GCATGCTCAAAAATGCCACC 58.919 50.000 11.37 0.00 42.73 4.61
3381 7249 1.352114 CATGCTCAAAAATGCCACCG 58.648 50.000 0.00 0.00 0.00 4.94
3382 7250 0.247185 ATGCTCAAAAATGCCACCGG 59.753 50.000 0.00 0.00 0.00 5.28
3383 7251 1.112315 TGCTCAAAAATGCCACCGGT 61.112 50.000 0.00 0.00 0.00 5.28
3384 7252 0.388520 GCTCAAAAATGCCACCGGTC 60.389 55.000 2.59 0.00 0.00 4.79
3385 7253 0.958091 CTCAAAAATGCCACCGGTCA 59.042 50.000 2.59 0.00 0.00 4.02
3386 7254 0.671251 TCAAAAATGCCACCGGTCAC 59.329 50.000 2.59 0.00 0.00 3.67
3387 7255 0.319469 CAAAAATGCCACCGGTCACC 60.319 55.000 2.59 0.00 0.00 4.02
3388 7256 0.757188 AAAAATGCCACCGGTCACCA 60.757 50.000 2.59 1.77 0.00 4.17
3389 7257 0.541764 AAAATGCCACCGGTCACCAT 60.542 50.000 2.59 4.54 0.00 3.55
3390 7258 0.541764 AAATGCCACCGGTCACCATT 60.542 50.000 2.59 11.05 0.00 3.16
3391 7259 0.541764 AATGCCACCGGTCACCATTT 60.542 50.000 2.59 0.00 0.00 2.32
3418 7286 2.010900 AGGAAAATCCTCTGCCCCC 58.989 57.895 0.00 0.00 45.66 5.40
3432 7300 2.933834 CCCCCTCCCTTTCCGTGT 60.934 66.667 0.00 0.00 0.00 4.49
3433 7301 2.535331 CCCCCTCCCTTTCCGTGTT 61.535 63.158 0.00 0.00 0.00 3.32
3434 7302 1.458927 CCCCTCCCTTTCCGTGTTT 59.541 57.895 0.00 0.00 0.00 2.83
3437 7305 0.537371 CCTCCCTTTCCGTGTTTGCT 60.537 55.000 0.00 0.00 0.00 3.91
3438 7306 0.593128 CTCCCTTTCCGTGTTTGCTG 59.407 55.000 0.00 0.00 0.00 4.41
3441 7309 1.106944 CCTTTCCGTGTTTGCTGGGT 61.107 55.000 0.00 0.00 0.00 4.51
3442 7310 0.310854 CTTTCCGTGTTTGCTGGGTC 59.689 55.000 0.00 0.00 0.00 4.46
3443 7311 0.394488 TTTCCGTGTTTGCTGGGTCA 60.394 50.000 0.00 0.00 0.00 4.02
3444 7312 1.098712 TTCCGTGTTTGCTGGGTCAC 61.099 55.000 0.00 0.00 0.00 3.67
3445 7313 2.551912 CCGTGTTTGCTGGGTCACC 61.552 63.158 0.00 0.00 37.24 4.02
3464 7332 9.679661 GGGTCACCCAATAATCATTTTTATTTT 57.320 29.630 8.52 0.00 44.65 1.82
3492 7360 6.505044 TTTTACTTTCCTTTCTATTCCCGC 57.495 37.500 0.00 0.00 0.00 6.13
3493 7361 5.431179 TTACTTTCCTTTCTATTCCCGCT 57.569 39.130 0.00 0.00 0.00 5.52
3494 7362 4.302559 ACTTTCCTTTCTATTCCCGCTT 57.697 40.909 0.00 0.00 0.00 4.68
3495 7363 4.262617 ACTTTCCTTTCTATTCCCGCTTC 58.737 43.478 0.00 0.00 0.00 3.86
3496 7364 4.019231 ACTTTCCTTTCTATTCCCGCTTCT 60.019 41.667 0.00 0.00 0.00 2.85
3497 7365 5.189145 ACTTTCCTTTCTATTCCCGCTTCTA 59.811 40.000 0.00 0.00 0.00 2.10
3498 7366 5.888982 TTCCTTTCTATTCCCGCTTCTAT 57.111 39.130 0.00 0.00 0.00 1.98
3499 7367 5.470047 TCCTTTCTATTCCCGCTTCTATC 57.530 43.478 0.00 0.00 0.00 2.08
3500 7368 5.148502 TCCTTTCTATTCCCGCTTCTATCT 58.851 41.667 0.00 0.00 0.00 1.98
3501 7369 5.602978 TCCTTTCTATTCCCGCTTCTATCTT 59.397 40.000 0.00 0.00 0.00 2.40
3502 7370 6.099845 TCCTTTCTATTCCCGCTTCTATCTTT 59.900 38.462 0.00 0.00 0.00 2.52
3503 7371 6.768381 CCTTTCTATTCCCGCTTCTATCTTTT 59.232 38.462 0.00 0.00 0.00 2.27
3504 7372 7.283354 CCTTTCTATTCCCGCTTCTATCTTTTT 59.717 37.037 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.134068 GGGGATAGAAGCTTGTGGGAC 60.134 57.143 2.10 0.00 0.00 4.46
2 3 1.213296 GGGGATAGAAGCTTGTGGGA 58.787 55.000 2.10 0.00 0.00 4.37
4 5 3.303351 AATGGGGATAGAAGCTTGTGG 57.697 47.619 2.10 0.00 0.00 4.17
5 6 3.817647 GCTAATGGGGATAGAAGCTTGTG 59.182 47.826 2.10 0.00 0.00 3.33
6 7 3.718956 AGCTAATGGGGATAGAAGCTTGT 59.281 43.478 2.10 1.06 36.98 3.16
7 8 4.070716 CAGCTAATGGGGATAGAAGCTTG 58.929 47.826 2.10 0.00 38.20 4.01
8 9 3.497584 GCAGCTAATGGGGATAGAAGCTT 60.498 47.826 0.00 0.00 38.20 3.74
9 10 2.039613 GCAGCTAATGGGGATAGAAGCT 59.960 50.000 0.00 0.00 40.79 3.74
10 11 2.224621 TGCAGCTAATGGGGATAGAAGC 60.225 50.000 0.00 0.00 0.00 3.86
11 12 3.072184 AGTGCAGCTAATGGGGATAGAAG 59.928 47.826 0.00 0.00 0.00 2.85
12 13 3.048600 AGTGCAGCTAATGGGGATAGAA 58.951 45.455 0.00 0.00 0.00 2.10
13 14 2.694397 AGTGCAGCTAATGGGGATAGA 58.306 47.619 0.00 0.00 0.00 1.98
14 15 3.580458 AGTAGTGCAGCTAATGGGGATAG 59.420 47.826 0.00 0.00 0.00 2.08
15 16 3.587498 AGTAGTGCAGCTAATGGGGATA 58.413 45.455 0.00 0.00 0.00 2.59
16 17 2.412591 AGTAGTGCAGCTAATGGGGAT 58.587 47.619 0.00 0.00 0.00 3.85
17 18 1.879575 AGTAGTGCAGCTAATGGGGA 58.120 50.000 0.00 0.00 0.00 4.81
18 19 2.965831 TCTAGTAGTGCAGCTAATGGGG 59.034 50.000 0.00 0.00 29.10 4.96
19 20 4.881019 ATCTAGTAGTGCAGCTAATGGG 57.119 45.455 0.00 0.00 29.10 4.00
30 31 3.197766 TGAAGGTGGGCAATCTAGTAGTG 59.802 47.826 0.00 0.00 0.00 2.74
31 32 3.450904 TGAAGGTGGGCAATCTAGTAGT 58.549 45.455 0.00 0.00 0.00 2.73
32 33 4.346418 AGATGAAGGTGGGCAATCTAGTAG 59.654 45.833 0.00 0.00 0.00 2.57
33 34 4.298626 AGATGAAGGTGGGCAATCTAGTA 58.701 43.478 0.00 0.00 0.00 1.82
34 35 3.118531 AGATGAAGGTGGGCAATCTAGT 58.881 45.455 0.00 0.00 0.00 2.57
35 36 3.853355 AGATGAAGGTGGGCAATCTAG 57.147 47.619 0.00 0.00 0.00 2.43
36 37 4.591321 AAAGATGAAGGTGGGCAATCTA 57.409 40.909 0.00 0.00 0.00 1.98
37 38 3.463048 AAAGATGAAGGTGGGCAATCT 57.537 42.857 0.00 0.00 0.00 2.40
38 39 4.541973 AAAAAGATGAAGGTGGGCAATC 57.458 40.909 0.00 0.00 0.00 2.67
59 60 8.760980 TTTGGAATCACTCTAAAGGAGAAAAA 57.239 30.769 0.00 0.00 44.45 1.94
60 61 8.760980 TTTTGGAATCACTCTAAAGGAGAAAA 57.239 30.769 0.00 0.00 44.45 2.29
61 62 8.940397 ATTTTGGAATCACTCTAAAGGAGAAA 57.060 30.769 0.00 0.00 44.45 2.52
62 63 8.940397 AATTTTGGAATCACTCTAAAGGAGAA 57.060 30.769 0.00 0.00 44.45 2.87
70 71 9.391006 GGTGTGTATAATTTTGGAATCACTCTA 57.609 33.333 0.00 0.00 0.00 2.43
71 72 8.109634 AGGTGTGTATAATTTTGGAATCACTCT 58.890 33.333 0.00 0.00 0.00 3.24
72 73 8.281212 AGGTGTGTATAATTTTGGAATCACTC 57.719 34.615 0.00 0.00 0.00 3.51
73 74 8.650143 AAGGTGTGTATAATTTTGGAATCACT 57.350 30.769 0.00 0.00 0.00 3.41
79 80 9.575868 TCAGTTAAAGGTGTGTATAATTTTGGA 57.424 29.630 0.00 0.00 0.00 3.53
80 81 9.840427 CTCAGTTAAAGGTGTGTATAATTTTGG 57.160 33.333 0.00 0.00 0.00 3.28
84 85 9.787435 TGTTCTCAGTTAAAGGTGTGTATAATT 57.213 29.630 0.00 0.00 0.00 1.40
85 86 9.959721 ATGTTCTCAGTTAAAGGTGTGTATAAT 57.040 29.630 0.00 0.00 0.00 1.28
87 88 9.865321 GTATGTTCTCAGTTAAAGGTGTGTATA 57.135 33.333 0.00 0.00 0.00 1.47
88 89 7.822822 GGTATGTTCTCAGTTAAAGGTGTGTAT 59.177 37.037 0.00 0.00 0.00 2.29
89 90 7.156673 GGTATGTTCTCAGTTAAAGGTGTGTA 58.843 38.462 0.00 0.00 0.00 2.90
90 91 5.995897 GGTATGTTCTCAGTTAAAGGTGTGT 59.004 40.000 0.00 0.00 0.00 3.72
91 92 5.995282 TGGTATGTTCTCAGTTAAAGGTGTG 59.005 40.000 0.00 0.00 0.00 3.82
92 93 6.182507 TGGTATGTTCTCAGTTAAAGGTGT 57.817 37.500 0.00 0.00 0.00 4.16
93 94 7.607991 AGAATGGTATGTTCTCAGTTAAAGGTG 59.392 37.037 0.00 0.00 30.34 4.00
94 95 7.690256 AGAATGGTATGTTCTCAGTTAAAGGT 58.310 34.615 0.00 0.00 30.34 3.50
95 96 8.567285 AAGAATGGTATGTTCTCAGTTAAAGG 57.433 34.615 0.00 0.00 34.97 3.11
96 97 9.442047 AGAAGAATGGTATGTTCTCAGTTAAAG 57.558 33.333 0.00 0.00 34.97 1.85
97 98 9.436957 GAGAAGAATGGTATGTTCTCAGTTAAA 57.563 33.333 8.73 0.00 42.96 1.52
98 99 8.593679 TGAGAAGAATGGTATGTTCTCAGTTAA 58.406 33.333 11.45 0.00 46.28 2.01
99 100 8.134202 TGAGAAGAATGGTATGTTCTCAGTTA 57.866 34.615 11.45 0.00 46.28 2.24
100 101 7.009179 TGAGAAGAATGGTATGTTCTCAGTT 57.991 36.000 11.45 0.00 46.28 3.16
101 102 6.611613 TGAGAAGAATGGTATGTTCTCAGT 57.388 37.500 11.45 0.00 46.28 3.41
104 105 7.699812 GCATTTTGAGAAGAATGGTATGTTCTC 59.300 37.037 7.12 7.12 43.49 2.87
105 106 7.363268 GGCATTTTGAGAAGAATGGTATGTTCT 60.363 37.037 0.00 0.00 37.52 3.01
106 107 6.753744 GGCATTTTGAGAAGAATGGTATGTTC 59.246 38.462 0.00 0.00 34.60 3.18
107 108 6.211184 TGGCATTTTGAGAAGAATGGTATGTT 59.789 34.615 0.00 0.00 34.60 2.71
108 109 5.716228 TGGCATTTTGAGAAGAATGGTATGT 59.284 36.000 0.00 0.00 34.60 2.29
109 110 6.211587 TGGCATTTTGAGAAGAATGGTATG 57.788 37.500 0.00 0.00 34.60 2.39
110 111 6.628844 GCTTGGCATTTTGAGAAGAATGGTAT 60.629 38.462 0.00 0.00 34.60 2.73
111 112 5.336690 GCTTGGCATTTTGAGAAGAATGGTA 60.337 40.000 0.00 0.00 34.60 3.25
112 113 4.562143 GCTTGGCATTTTGAGAAGAATGGT 60.562 41.667 0.00 0.00 34.60 3.55
113 114 3.930848 GCTTGGCATTTTGAGAAGAATGG 59.069 43.478 0.00 0.00 34.60 3.16
114 115 4.562082 TGCTTGGCATTTTGAGAAGAATG 58.438 39.130 0.00 0.00 36.56 2.67
115 116 4.877378 TGCTTGGCATTTTGAGAAGAAT 57.123 36.364 0.00 0.00 31.71 2.40
116 117 4.669206 TTGCTTGGCATTTTGAGAAGAA 57.331 36.364 0.00 0.00 38.76 2.52
117 118 4.562082 CATTGCTTGGCATTTTGAGAAGA 58.438 39.130 0.00 0.00 38.76 2.87
118 119 3.124636 GCATTGCTTGGCATTTTGAGAAG 59.875 43.478 0.16 0.00 38.76 2.85
119 120 3.068560 GCATTGCTTGGCATTTTGAGAA 58.931 40.909 0.16 0.00 38.76 2.87
120 121 2.037381 TGCATTGCTTGGCATTTTGAGA 59.963 40.909 10.49 0.00 38.76 3.27
121 122 2.415168 CTGCATTGCTTGGCATTTTGAG 59.585 45.455 10.49 0.00 38.76 3.02
122 123 2.224329 ACTGCATTGCTTGGCATTTTGA 60.224 40.909 10.49 0.00 38.76 2.69
123 124 2.147958 ACTGCATTGCTTGGCATTTTG 58.852 42.857 10.49 0.00 38.76 2.44
124 125 2.038033 AGACTGCATTGCTTGGCATTTT 59.962 40.909 10.49 0.00 38.76 1.82
125 126 1.621814 AGACTGCATTGCTTGGCATTT 59.378 42.857 10.49 0.00 38.76 2.32
126 127 1.203994 GAGACTGCATTGCTTGGCATT 59.796 47.619 10.49 0.00 38.76 3.56
127 128 0.815734 GAGACTGCATTGCTTGGCAT 59.184 50.000 10.49 0.00 38.76 4.40
128 129 1.246056 GGAGACTGCATTGCTTGGCA 61.246 55.000 10.49 0.00 38.52 4.92
129 130 0.964358 AGGAGACTGCATTGCTTGGC 60.964 55.000 10.49 5.13 41.13 4.52
130 131 1.471684 GAAGGAGACTGCATTGCTTGG 59.528 52.381 10.49 3.06 42.68 3.61
131 132 2.419324 GAGAAGGAGACTGCATTGCTTG 59.581 50.000 10.49 5.51 42.68 4.01
132 133 2.617532 GGAGAAGGAGACTGCATTGCTT 60.618 50.000 10.49 0.00 42.68 3.91
133 134 1.065564 GGAGAAGGAGACTGCATTGCT 60.066 52.381 10.49 0.00 42.68 3.91
134 135 1.377536 GGAGAAGGAGACTGCATTGC 58.622 55.000 0.46 0.46 42.68 3.56
135 136 1.741732 CGGGAGAAGGAGACTGCATTG 60.742 57.143 0.00 0.00 42.68 2.82
136 137 0.539051 CGGGAGAAGGAGACTGCATT 59.461 55.000 0.00 0.00 42.68 3.56
137 138 0.324738 TCGGGAGAAGGAGACTGCAT 60.325 55.000 0.00 0.00 42.68 3.96
138 139 0.541998 TTCGGGAGAAGGAGACTGCA 60.542 55.000 0.00 0.00 45.39 4.41
139 140 2.277858 TTCGGGAGAAGGAGACTGC 58.722 57.895 0.00 0.00 45.39 4.40
153 154 1.278127 TCTTTTCTACCCAGGCTTCGG 59.722 52.381 0.00 0.00 0.00 4.30
154 155 2.233922 TCTCTTTTCTACCCAGGCTTCG 59.766 50.000 0.00 0.00 0.00 3.79
155 156 3.262151 AGTCTCTTTTCTACCCAGGCTTC 59.738 47.826 0.00 0.00 0.00 3.86
156 157 3.252351 AGTCTCTTTTCTACCCAGGCTT 58.748 45.455 0.00 0.00 0.00 4.35
157 158 2.909217 AGTCTCTTTTCTACCCAGGCT 58.091 47.619 0.00 0.00 0.00 4.58
158 159 3.008049 TCAAGTCTCTTTTCTACCCAGGC 59.992 47.826 0.00 0.00 0.00 4.85
159 160 4.891992 TCAAGTCTCTTTTCTACCCAGG 57.108 45.455 0.00 0.00 0.00 4.45
160 161 6.042638 TGATCAAGTCTCTTTTCTACCCAG 57.957 41.667 0.00 0.00 0.00 4.45
161 162 6.433847 TTGATCAAGTCTCTTTTCTACCCA 57.566 37.500 3.38 0.00 0.00 4.51
162 163 6.976636 CTTGATCAAGTCTCTTTTCTACCC 57.023 41.667 24.65 0.00 33.87 3.69
176 177 7.646314 AGAAGATGTGTGAAAACTTGATCAAG 58.354 34.615 29.74 29.74 43.79 3.02
177 178 7.518848 CGAGAAGATGTGTGAAAACTTGATCAA 60.519 37.037 8.12 8.12 0.00 2.57
178 179 6.073602 CGAGAAGATGTGTGAAAACTTGATCA 60.074 38.462 0.00 0.00 0.00 2.92
179 180 6.073548 ACGAGAAGATGTGTGAAAACTTGATC 60.074 38.462 0.00 0.00 0.00 2.92
180 181 5.760253 ACGAGAAGATGTGTGAAAACTTGAT 59.240 36.000 0.00 0.00 0.00 2.57
181 182 5.116180 ACGAGAAGATGTGTGAAAACTTGA 58.884 37.500 0.00 0.00 0.00 3.02
182 183 5.409643 ACGAGAAGATGTGTGAAAACTTG 57.590 39.130 0.00 0.00 0.00 3.16
183 184 4.511826 GGACGAGAAGATGTGTGAAAACTT 59.488 41.667 0.00 0.00 0.00 2.66
184 185 4.058817 GGACGAGAAGATGTGTGAAAACT 58.941 43.478 0.00 0.00 0.00 2.66
185 186 3.186613 GGGACGAGAAGATGTGTGAAAAC 59.813 47.826 0.00 0.00 0.00 2.43
186 187 3.399330 GGGACGAGAAGATGTGTGAAAA 58.601 45.455 0.00 0.00 0.00 2.29
187 188 2.289444 GGGGACGAGAAGATGTGTGAAA 60.289 50.000 0.00 0.00 0.00 2.69
188 189 1.275291 GGGGACGAGAAGATGTGTGAA 59.725 52.381 0.00 0.00 0.00 3.18
189 190 0.895530 GGGGACGAGAAGATGTGTGA 59.104 55.000 0.00 0.00 0.00 3.58
190 191 0.108138 GGGGGACGAGAAGATGTGTG 60.108 60.000 0.00 0.00 0.00 3.82
191 192 2.287829 GGGGGACGAGAAGATGTGT 58.712 57.895 0.00 0.00 0.00 3.72
202 203 3.188159 TGATTTATTTCTCGGGGGACG 57.812 47.619 0.00 0.00 46.11 4.79
203 204 4.703093 TGTTTGATTTATTTCTCGGGGGAC 59.297 41.667 0.00 0.00 0.00 4.46
204 205 4.703093 GTGTTTGATTTATTTCTCGGGGGA 59.297 41.667 0.00 0.00 0.00 4.81
205 206 4.142249 GGTGTTTGATTTATTTCTCGGGGG 60.142 45.833 0.00 0.00 0.00 5.40
206 207 4.142249 GGGTGTTTGATTTATTTCTCGGGG 60.142 45.833 0.00 0.00 0.00 5.73
207 208 4.461081 TGGGTGTTTGATTTATTTCTCGGG 59.539 41.667 0.00 0.00 0.00 5.14
208 209 5.637006 TGGGTGTTTGATTTATTTCTCGG 57.363 39.130 0.00 0.00 0.00 4.63
209 210 7.812191 TGAAATGGGTGTTTGATTTATTTCTCG 59.188 33.333 0.00 0.00 35.32 4.04
210 211 9.143631 CTGAAATGGGTGTTTGATTTATTTCTC 57.856 33.333 0.00 0.00 35.32 2.87
211 212 8.650490 ACTGAAATGGGTGTTTGATTTATTTCT 58.350 29.630 0.00 0.00 35.32 2.52
212 213 8.831715 ACTGAAATGGGTGTTTGATTTATTTC 57.168 30.769 0.00 0.00 35.02 2.17
213 214 8.650490 AGACTGAAATGGGTGTTTGATTTATTT 58.350 29.630 0.00 0.00 0.00 1.40
214 215 8.193953 AGACTGAAATGGGTGTTTGATTTATT 57.806 30.769 0.00 0.00 0.00 1.40
215 216 7.781324 AGACTGAAATGGGTGTTTGATTTAT 57.219 32.000 0.00 0.00 0.00 1.40
216 217 7.942341 ACTAGACTGAAATGGGTGTTTGATTTA 59.058 33.333 0.00 0.00 0.00 1.40
217 218 6.777580 ACTAGACTGAAATGGGTGTTTGATTT 59.222 34.615 0.00 0.00 0.00 2.17
218 219 6.306987 ACTAGACTGAAATGGGTGTTTGATT 58.693 36.000 0.00 0.00 0.00 2.57
219 220 5.880901 ACTAGACTGAAATGGGTGTTTGAT 58.119 37.500 0.00 0.00 0.00 2.57
220 221 5.304686 ACTAGACTGAAATGGGTGTTTGA 57.695 39.130 0.00 0.00 0.00 2.69
221 222 5.765182 AGAACTAGACTGAAATGGGTGTTTG 59.235 40.000 0.00 0.00 0.00 2.93
222 223 5.765182 CAGAACTAGACTGAAATGGGTGTTT 59.235 40.000 13.45 0.00 37.54 2.83
223 224 5.163195 ACAGAACTAGACTGAAATGGGTGTT 60.163 40.000 21.38 0.00 38.55 3.32
224 225 4.348168 ACAGAACTAGACTGAAATGGGTGT 59.652 41.667 21.38 2.04 38.55 4.16
225 226 4.899502 ACAGAACTAGACTGAAATGGGTG 58.100 43.478 21.38 1.57 38.55 4.61
226 227 5.568620 AACAGAACTAGACTGAAATGGGT 57.431 39.130 21.38 2.47 38.55 4.51
227 228 6.884280 AAAACAGAACTAGACTGAAATGGG 57.116 37.500 21.38 1.94 38.55 4.00
228 229 8.159344 AGAAAAACAGAACTAGACTGAAATGG 57.841 34.615 21.38 2.47 38.55 3.16
231 232 8.827677 GCTAAGAAAAACAGAACTAGACTGAAA 58.172 33.333 21.38 4.29 38.55 2.69
232 233 8.204836 AGCTAAGAAAAACAGAACTAGACTGAA 58.795 33.333 21.38 3.61 38.55 3.02
233 234 7.653713 CAGCTAAGAAAAACAGAACTAGACTGA 59.346 37.037 21.38 3.45 38.55 3.41
234 235 7.653713 TCAGCTAAGAAAAACAGAACTAGACTG 59.346 37.037 15.87 15.87 40.68 3.51
235 236 7.727181 TCAGCTAAGAAAAACAGAACTAGACT 58.273 34.615 0.00 0.00 0.00 3.24
236 237 7.948278 TCAGCTAAGAAAAACAGAACTAGAC 57.052 36.000 0.00 0.00 0.00 2.59
237 238 8.958119 TTTCAGCTAAGAAAAACAGAACTAGA 57.042 30.769 0.00 0.00 34.77 2.43
240 241 9.875691 AAAATTTCAGCTAAGAAAAACAGAACT 57.124 25.926 3.59 0.00 40.54 3.01
243 244 9.965824 CCTAAAATTTCAGCTAAGAAAAACAGA 57.034 29.630 3.59 0.00 40.54 3.41
244 245 9.196552 CCCTAAAATTTCAGCTAAGAAAAACAG 57.803 33.333 3.59 0.67 40.54 3.16
245 246 7.655732 GCCCTAAAATTTCAGCTAAGAAAAACA 59.344 33.333 3.59 0.00 40.54 2.83
246 247 7.117812 GGCCCTAAAATTTCAGCTAAGAAAAAC 59.882 37.037 3.59 0.00 40.54 2.43
247 248 7.016170 AGGCCCTAAAATTTCAGCTAAGAAAAA 59.984 33.333 0.00 0.00 40.54 1.94
248 249 6.496911 AGGCCCTAAAATTTCAGCTAAGAAAA 59.503 34.615 0.00 0.00 40.54 2.29
249 250 6.016555 AGGCCCTAAAATTTCAGCTAAGAAA 58.983 36.000 0.00 2.05 41.31 2.52
250 251 5.418840 CAGGCCCTAAAATTTCAGCTAAGAA 59.581 40.000 0.00 0.00 0.00 2.52
251 252 4.949856 CAGGCCCTAAAATTTCAGCTAAGA 59.050 41.667 0.00 0.00 0.00 2.10
252 253 4.098501 CCAGGCCCTAAAATTTCAGCTAAG 59.901 45.833 0.00 0.00 0.00 2.18
253 254 4.023291 CCAGGCCCTAAAATTTCAGCTAA 58.977 43.478 0.00 0.00 0.00 3.09
254 255 3.627237 CCCAGGCCCTAAAATTTCAGCTA 60.627 47.826 0.00 0.00 0.00 3.32
255 256 2.460669 CCAGGCCCTAAAATTTCAGCT 58.539 47.619 0.00 0.00 0.00 4.24
256 257 1.482182 CCCAGGCCCTAAAATTTCAGC 59.518 52.381 0.00 0.00 0.00 4.26
257 258 2.760650 GACCCAGGCCCTAAAATTTCAG 59.239 50.000 0.00 0.00 0.00 3.02
258 259 2.815158 GACCCAGGCCCTAAAATTTCA 58.185 47.619 0.00 0.00 0.00 2.69
259 260 1.749063 CGACCCAGGCCCTAAAATTTC 59.251 52.381 0.00 0.00 0.00 2.17
260 261 1.356398 TCGACCCAGGCCCTAAAATTT 59.644 47.619 0.00 0.00 0.00 1.82
261 262 0.996583 TCGACCCAGGCCCTAAAATT 59.003 50.000 0.00 0.00 0.00 1.82
262 263 0.255033 GTCGACCCAGGCCCTAAAAT 59.745 55.000 3.51 0.00 0.00 1.82
263 264 1.128809 TGTCGACCCAGGCCCTAAAA 61.129 55.000 14.12 0.00 0.00 1.52
264 265 0.912487 ATGTCGACCCAGGCCCTAAA 60.912 55.000 14.12 0.00 0.00 1.85
265 266 1.306654 ATGTCGACCCAGGCCCTAA 60.307 57.895 14.12 0.00 0.00 2.69
266 267 1.760875 GATGTCGACCCAGGCCCTA 60.761 63.158 14.12 0.00 0.00 3.53
267 268 3.083997 GATGTCGACCCAGGCCCT 61.084 66.667 14.12 0.00 0.00 5.19
268 269 2.270874 AATGATGTCGACCCAGGCCC 62.271 60.000 14.12 0.00 0.00 5.80
269 270 0.394352 AAATGATGTCGACCCAGGCC 60.394 55.000 14.12 0.00 0.00 5.19
270 271 1.017387 GAAATGATGTCGACCCAGGC 58.983 55.000 14.12 0.00 0.00 4.85
271 272 2.401583 TGAAATGATGTCGACCCAGG 57.598 50.000 14.12 0.00 0.00 4.45
272 273 4.194640 AGAATGAAATGATGTCGACCCAG 58.805 43.478 14.12 0.00 0.00 4.45
273 274 4.220693 AGAATGAAATGATGTCGACCCA 57.779 40.909 14.12 11.56 0.00 4.51
274 275 4.396166 ACAAGAATGAAATGATGTCGACCC 59.604 41.667 14.12 5.58 0.00 4.46
323 325 6.925610 TTAGCCAGCATGTGTCTTATAAAG 57.074 37.500 0.00 0.00 0.00 1.85
328 330 5.739959 TGTATTTAGCCAGCATGTGTCTTA 58.260 37.500 0.00 0.00 0.00 2.10
329 331 4.588899 TGTATTTAGCCAGCATGTGTCTT 58.411 39.130 0.00 0.00 0.00 3.01
330 332 4.220693 TGTATTTAGCCAGCATGTGTCT 57.779 40.909 0.00 0.00 0.00 3.41
331 333 4.319046 CGATGTATTTAGCCAGCATGTGTC 60.319 45.833 0.00 0.00 0.00 3.67
332 334 3.561310 CGATGTATTTAGCCAGCATGTGT 59.439 43.478 0.00 0.00 0.00 3.72
333 335 3.809279 TCGATGTATTTAGCCAGCATGTG 59.191 43.478 0.00 0.00 0.00 3.21
334 336 4.071961 TCGATGTATTTAGCCAGCATGT 57.928 40.909 0.00 0.00 0.00 3.21
335 337 4.670992 GCATCGATGTATTTAGCCAGCATG 60.671 45.833 25.47 0.00 0.00 4.06
336 338 3.438087 GCATCGATGTATTTAGCCAGCAT 59.562 43.478 25.47 0.00 0.00 3.79
337 339 2.807967 GCATCGATGTATTTAGCCAGCA 59.192 45.455 25.47 0.00 0.00 4.41
338 340 2.807967 TGCATCGATGTATTTAGCCAGC 59.192 45.455 25.47 8.02 0.00 4.85
339 341 4.093998 GGATGCATCGATGTATTTAGCCAG 59.906 45.833 26.58 0.00 33.17 4.85
408 410 3.654414 GTCCTACAGAAAGACCAGTGTG 58.346 50.000 0.00 0.00 0.00 3.82
438 442 1.615384 GCAGGCAAGAGGAGGTTGAAT 60.615 52.381 0.00 0.00 0.00 2.57
491 495 0.111832 TAGAGTGGAGTGTCGGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
493 497 0.404812 AGTAGAGTGGAGTGTCGGGT 59.595 55.000 0.00 0.00 0.00 5.28
494 498 1.096416 GAGTAGAGTGGAGTGTCGGG 58.904 60.000 0.00 0.00 0.00 5.14
495 499 1.096416 GGAGTAGAGTGGAGTGTCGG 58.904 60.000 0.00 0.00 0.00 4.79
496 500 1.469308 GTGGAGTAGAGTGGAGTGTCG 59.531 57.143 0.00 0.00 0.00 4.35
497 501 1.819903 GGTGGAGTAGAGTGGAGTGTC 59.180 57.143 0.00 0.00 0.00 3.67
892 929 3.807538 CACGGCACAGCAGCATCC 61.808 66.667 0.00 0.00 35.83 3.51
964 1028 3.192001 GGAAAGAAGCAACATCATCAGCA 59.808 43.478 0.00 0.00 0.00 4.41
978 1042 1.882623 GTCCCTGCAAGTGGAAAGAAG 59.117 52.381 1.13 0.00 35.51 2.85
1006 1073 2.886081 CGAGTGTGATTTCTCCTCTGG 58.114 52.381 0.00 0.00 0.00 3.86
1269 4679 3.023119 ACATTGCAGACACACCAAGAAA 58.977 40.909 0.00 0.00 0.00 2.52
1302 4728 1.953559 ACAGCATGAGTGAACGTTGT 58.046 45.000 5.00 0.00 39.69 3.32
1333 4759 1.295423 CCACCACCGTCCCTACAAG 59.705 63.158 0.00 0.00 0.00 3.16
1337 4763 3.000819 CTGCCACCACCGTCCCTA 61.001 66.667 0.00 0.00 0.00 3.53
2007 5442 3.054728 TGTTCACCACAAGAAGGTTCTCA 60.055 43.478 0.00 0.00 37.23 3.27
2044 5479 3.716195 CTGTGGATCCCCGGTGCA 61.716 66.667 9.90 0.00 34.29 4.57
2203 5644 1.668826 TACAGCCCAGGTTCAGGAAT 58.331 50.000 0.00 0.00 0.00 3.01
2290 5734 1.271163 CCCCACGGTTGACACACTAAT 60.271 52.381 0.00 0.00 0.00 1.73
2292 5736 1.749665 CCCCACGGTTGACACACTA 59.250 57.895 0.00 0.00 0.00 2.74
2301 5745 2.855014 TGGTTAGCCCCCACGGTT 60.855 61.111 0.00 0.00 0.00 4.44
2898 6425 1.623811 ACTTCAGGCGGTTACTGATGT 59.376 47.619 7.80 7.80 43.82 3.06
2908 6435 3.945285 ACAACCATAATTACTTCAGGCGG 59.055 43.478 0.00 0.00 0.00 6.13
2911 6438 8.561738 ACAGTAACAACCATAATTACTTCAGG 57.438 34.615 0.00 0.00 37.10 3.86
3051 6614 6.530019 TCACAAGATATCTACTTGAGCACA 57.470 37.500 5.46 0.00 44.92 4.57
3161 6844 0.514255 CGCACATGTTCCACTGTCTG 59.486 55.000 0.00 0.00 0.00 3.51
3264 7132 6.070309 AGTGGCATAAATGATAAAAGCCCAAA 60.070 34.615 0.00 0.00 39.85 3.28
3265 7133 5.424895 AGTGGCATAAATGATAAAAGCCCAA 59.575 36.000 0.00 0.00 39.85 4.12
3268 7136 7.277174 ACTAGTGGCATAAATGATAAAAGCC 57.723 36.000 0.00 0.00 40.93 4.35
3269 7137 8.190784 ACAACTAGTGGCATAAATGATAAAAGC 58.809 33.333 0.00 0.00 0.00 3.51
3295 7163 2.486548 GGCAAAACTGAGTAGTGGGACA 60.487 50.000 0.00 0.00 37.19 4.02
3296 7164 2.152016 GGCAAAACTGAGTAGTGGGAC 58.848 52.381 0.00 0.00 37.19 4.46
3298 7166 1.880027 GTGGCAAAACTGAGTAGTGGG 59.120 52.381 0.00 0.00 37.19 4.61
3299 7167 2.851195 AGTGGCAAAACTGAGTAGTGG 58.149 47.619 0.00 0.00 37.19 4.00
3300 7168 4.377021 TGTAGTGGCAAAACTGAGTAGTG 58.623 43.478 0.00 0.00 37.19 2.74
3301 7169 4.682778 TGTAGTGGCAAAACTGAGTAGT 57.317 40.909 0.00 0.00 39.32 2.73
3302 7170 6.560253 ATTTGTAGTGGCAAAACTGAGTAG 57.440 37.500 0.00 0.00 41.03 2.57
3303 7171 6.952773 AATTTGTAGTGGCAAAACTGAGTA 57.047 33.333 0.00 0.00 41.03 2.59
3305 7173 6.272318 TGAAATTTGTAGTGGCAAAACTGAG 58.728 36.000 0.00 0.00 41.03 3.35
3306 7174 6.214191 TGAAATTTGTAGTGGCAAAACTGA 57.786 33.333 0.00 0.00 41.03 3.41
3307 7175 6.534793 AGTTGAAATTTGTAGTGGCAAAACTG 59.465 34.615 0.00 0.00 41.03 3.16
3308 7176 6.534793 CAGTTGAAATTTGTAGTGGCAAAACT 59.465 34.615 0.00 0.00 41.03 2.66
3309 7177 6.704819 CAGTTGAAATTTGTAGTGGCAAAAC 58.295 36.000 0.00 0.00 41.03 2.43
3310 7178 5.293079 GCAGTTGAAATTTGTAGTGGCAAAA 59.707 36.000 0.00 0.00 41.03 2.44
3311 7179 4.808364 GCAGTTGAAATTTGTAGTGGCAAA 59.192 37.500 0.00 0.00 41.77 3.68
3312 7180 4.099266 AGCAGTTGAAATTTGTAGTGGCAA 59.901 37.500 0.00 0.00 0.00 4.52
3313 7181 3.636300 AGCAGTTGAAATTTGTAGTGGCA 59.364 39.130 0.00 0.00 0.00 4.92
3314 7182 4.229876 GAGCAGTTGAAATTTGTAGTGGC 58.770 43.478 0.00 0.00 0.00 5.01
3315 7183 5.437289 TGAGCAGTTGAAATTTGTAGTGG 57.563 39.130 0.00 0.00 0.00 4.00
3316 7184 7.754069 TTTTGAGCAGTTGAAATTTGTAGTG 57.246 32.000 0.00 0.00 0.00 2.74
3317 7185 8.819974 CATTTTTGAGCAGTTGAAATTTGTAGT 58.180 29.630 0.00 0.00 0.00 2.73
3318 7186 7.795272 GCATTTTTGAGCAGTTGAAATTTGTAG 59.205 33.333 0.00 0.00 0.00 2.74
3319 7187 7.254727 GGCATTTTTGAGCAGTTGAAATTTGTA 60.255 33.333 0.00 0.00 0.00 2.41
3320 7188 6.458615 GGCATTTTTGAGCAGTTGAAATTTGT 60.459 34.615 0.00 0.00 0.00 2.83
3322 7190 5.589452 TGGCATTTTTGAGCAGTTGAAATTT 59.411 32.000 0.00 0.00 0.00 1.82
3323 7191 5.124645 TGGCATTTTTGAGCAGTTGAAATT 58.875 33.333 0.00 0.00 0.00 1.82
3324 7192 4.706035 TGGCATTTTTGAGCAGTTGAAAT 58.294 34.783 0.00 0.00 0.00 2.17
3326 7194 3.815856 TGGCATTTTTGAGCAGTTGAA 57.184 38.095 0.00 0.00 0.00 2.69
3327 7195 3.612241 CGATGGCATTTTTGAGCAGTTGA 60.612 43.478 0.00 0.00 0.00 3.18
3328 7196 2.664568 CGATGGCATTTTTGAGCAGTTG 59.335 45.455 0.00 0.00 0.00 3.16
3329 7197 2.927871 GCGATGGCATTTTTGAGCAGTT 60.928 45.455 0.00 0.00 39.62 3.16
3330 7198 1.403249 GCGATGGCATTTTTGAGCAGT 60.403 47.619 0.00 0.00 39.62 4.40
3331 7199 1.135199 AGCGATGGCATTTTTGAGCAG 60.135 47.619 0.00 0.00 43.41 4.24
3332 7200 0.889994 AGCGATGGCATTTTTGAGCA 59.110 45.000 0.00 0.00 43.41 4.26
3333 7201 1.922545 GAAGCGATGGCATTTTTGAGC 59.077 47.619 0.00 1.40 43.41 4.26
3334 7202 3.498927 AGAAGCGATGGCATTTTTGAG 57.501 42.857 0.00 0.00 43.41 3.02
3335 7203 3.940209 AAGAAGCGATGGCATTTTTGA 57.060 38.095 0.00 0.00 43.41 2.69
3336 7204 4.563976 CCTAAAGAAGCGATGGCATTTTTG 59.436 41.667 0.00 0.00 43.41 2.44
3337 7205 4.747810 CCTAAAGAAGCGATGGCATTTTT 58.252 39.130 0.00 0.46 43.41 1.94
3338 7206 3.429410 GCCTAAAGAAGCGATGGCATTTT 60.429 43.478 0.00 0.00 43.41 1.82
3340 7208 1.678101 GCCTAAAGAAGCGATGGCATT 59.322 47.619 0.00 0.00 43.41 3.56
3341 7209 1.312815 GCCTAAAGAAGCGATGGCAT 58.687 50.000 0.00 0.00 43.41 4.40
3342 7210 2.780595 GCCTAAAGAAGCGATGGCA 58.219 52.632 1.50 0.00 43.41 4.92
3349 7217 0.028637 GAGCATGCGCCTAAAGAAGC 59.971 55.000 13.01 0.00 39.83 3.86
3350 7218 1.372582 TGAGCATGCGCCTAAAGAAG 58.627 50.000 19.19 0.00 39.83 2.85
3353 7221 2.634982 TTTTGAGCATGCGCCTAAAG 57.365 45.000 19.19 0.00 39.83 1.85
3354 7222 3.252400 CATTTTTGAGCATGCGCCTAAA 58.748 40.909 19.19 17.44 39.83 1.85
3355 7223 2.878580 CATTTTTGAGCATGCGCCTAA 58.121 42.857 19.19 10.18 39.83 2.69
3356 7224 1.469595 GCATTTTTGAGCATGCGCCTA 60.470 47.619 19.19 4.07 39.83 3.93
3357 7225 0.738412 GCATTTTTGAGCATGCGCCT 60.738 50.000 19.19 0.00 39.83 5.52
3358 7226 1.698714 GGCATTTTTGAGCATGCGCC 61.699 55.000 19.19 15.40 45.81 6.53
3359 7227 1.015085 TGGCATTTTTGAGCATGCGC 61.015 50.000 15.17 15.17 45.81 6.09
3360 7228 0.717224 GTGGCATTTTTGAGCATGCG 59.283 50.000 13.01 0.00 45.81 4.73
3361 7229 1.081094 GGTGGCATTTTTGAGCATGC 58.919 50.000 10.51 10.51 44.39 4.06
3362 7230 1.352114 CGGTGGCATTTTTGAGCATG 58.648 50.000 0.00 0.00 0.00 4.06
3363 7231 0.247185 CCGGTGGCATTTTTGAGCAT 59.753 50.000 0.00 0.00 0.00 3.79
3364 7232 1.112315 ACCGGTGGCATTTTTGAGCA 61.112 50.000 6.12 0.00 0.00 4.26
3365 7233 0.388520 GACCGGTGGCATTTTTGAGC 60.389 55.000 14.63 0.00 0.00 4.26
3366 7234 0.958091 TGACCGGTGGCATTTTTGAG 59.042 50.000 14.63 0.00 0.00 3.02
3367 7235 0.671251 GTGACCGGTGGCATTTTTGA 59.329 50.000 14.63 0.00 0.00 2.69
3368 7236 0.319469 GGTGACCGGTGGCATTTTTG 60.319 55.000 14.63 0.00 0.00 2.44
3369 7237 0.757188 TGGTGACCGGTGGCATTTTT 60.757 50.000 14.63 0.00 0.00 1.94
3370 7238 0.541764 ATGGTGACCGGTGGCATTTT 60.542 50.000 14.63 0.00 0.00 1.82
3371 7239 0.541764 AATGGTGACCGGTGGCATTT 60.542 50.000 14.63 0.00 0.00 2.32
3372 7240 0.541764 AAATGGTGACCGGTGGCATT 60.542 50.000 14.63 4.54 0.00 3.56
3373 7241 0.541764 AAAATGGTGACCGGTGGCAT 60.542 50.000 14.63 0.00 0.00 4.40
3374 7242 0.757188 AAAAATGGTGACCGGTGGCA 60.757 50.000 14.63 0.19 0.00 4.92
3375 7243 2.046108 AAAAATGGTGACCGGTGGC 58.954 52.632 14.63 3.65 0.00 5.01
3415 7283 2.076597 AAACACGGAAAGGGAGGGGG 62.077 60.000 0.00 0.00 0.00 5.40
3417 7285 1.524008 GCAAACACGGAAAGGGAGGG 61.524 60.000 0.00 0.00 0.00 4.30
3418 7286 0.537371 AGCAAACACGGAAAGGGAGG 60.537 55.000 0.00 0.00 0.00 4.30
3419 7287 0.593128 CAGCAAACACGGAAAGGGAG 59.407 55.000 0.00 0.00 0.00 4.30
3420 7288 0.821711 CCAGCAAACACGGAAAGGGA 60.822 55.000 0.00 0.00 0.00 4.20
3421 7289 1.659794 CCAGCAAACACGGAAAGGG 59.340 57.895 0.00 0.00 0.00 3.95
3422 7290 1.106944 ACCCAGCAAACACGGAAAGG 61.107 55.000 0.00 0.00 0.00 3.11
3423 7291 0.310854 GACCCAGCAAACACGGAAAG 59.689 55.000 0.00 0.00 0.00 2.62
3425 7293 1.098712 GTGACCCAGCAAACACGGAA 61.099 55.000 0.00 0.00 0.00 4.30
3426 7294 1.525077 GTGACCCAGCAAACACGGA 60.525 57.895 0.00 0.00 0.00 4.69
3427 7295 2.551912 GGTGACCCAGCAAACACGG 61.552 63.158 0.00 0.00 34.59 4.94
3428 7296 3.030652 GGTGACCCAGCAAACACG 58.969 61.111 0.00 0.00 34.59 4.49
3468 7336 6.717997 AGCGGGAATAGAAAGGAAAGTAAAAA 59.282 34.615 0.00 0.00 0.00 1.94
3469 7337 6.243148 AGCGGGAATAGAAAGGAAAGTAAAA 58.757 36.000 0.00 0.00 0.00 1.52
3470 7338 5.812286 AGCGGGAATAGAAAGGAAAGTAAA 58.188 37.500 0.00 0.00 0.00 2.01
3471 7339 5.431179 AGCGGGAATAGAAAGGAAAGTAA 57.569 39.130 0.00 0.00 0.00 2.24
3472 7340 5.189145 AGAAGCGGGAATAGAAAGGAAAGTA 59.811 40.000 0.00 0.00 0.00 2.24
3473 7341 4.019231 AGAAGCGGGAATAGAAAGGAAAGT 60.019 41.667 0.00 0.00 0.00 2.66
3474 7342 4.518249 AGAAGCGGGAATAGAAAGGAAAG 58.482 43.478 0.00 0.00 0.00 2.62
3475 7343 4.569719 AGAAGCGGGAATAGAAAGGAAA 57.430 40.909 0.00 0.00 0.00 3.13
3476 7344 5.602978 AGATAGAAGCGGGAATAGAAAGGAA 59.397 40.000 0.00 0.00 0.00 3.36
3477 7345 5.148502 AGATAGAAGCGGGAATAGAAAGGA 58.851 41.667 0.00 0.00 0.00 3.36
3478 7346 5.476091 AGATAGAAGCGGGAATAGAAAGG 57.524 43.478 0.00 0.00 0.00 3.11
3479 7347 7.793927 AAAAGATAGAAGCGGGAATAGAAAG 57.206 36.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.