AutoCloner

Multiple sequence alignment - TraesCS1D01G406100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G406100	chr1D	100.000	3215	0	0	1	3215	470076571	470079785	0.000000e+00	5938
1	TraesCS1D01G406100	chr1D	83.025	1461	201	30	964	2402	470124139	470125574	0.000000e+00	1280
2	TraesCS1D01G406100	chr1D	80.463	1469	252	25	992	2433	470183964	470185424	0.000000e+00	1090
3	TraesCS1D01G406100	chr1D	82.455	1214	188	18	969	2170	470190083	470191283	0.000000e+00	1038
4	TraesCS1D01G406100	chr1D	79.462	1300	227	23	1041	2310	470198453	470199742	0.000000e+00	885
5	TraesCS1D01G406100	chr1B	89.763	3253	188	75	1	3215	652458812	652461957	0.000000e+00	4028
6	TraesCS1D01G406100	chr1B	83.511	1407	178	31	1027	2402	652485950	652487333	0.000000e+00	1264
7	TraesCS1D01G406100	chr1B	79.866	1639	274	37	960	2572	652569911	652571519	0.000000e+00	1147
8	TraesCS1D01G406100	chr1B	79.661	1357	227	28	991	2315	652633131	652634470	0.000000e+00	931
9	TraesCS1D01G406100	chr1B	81.757	148	14	6	2162	2298	652577097	652577242	9.430000e-21	111
10	TraesCS1D01G406100	chr1A	89.148	3308	160	78	1	3215	563685736	563688937	0.000000e+00	3936
11	TraesCS1D01G406100	chr1A	83.356	1460	199	26	964	2402	563765409	563766845	0.000000e+00	1310
12	TraesCS1D01G406100	chr1A	81.619	1458	233	26	964	2402	563783580	563785021	0.000000e+00	1175
13	TraesCS1D01G406100	chr1A	80.234	1452	252	24	970	2402	563774086	563775521	0.000000e+00	1059
14	TraesCS1D01G406100	chr1A	85.165	910	121	10	968	1873	563791354	563792253	0.000000e+00	920
15	TraesCS1D01G406100	chr1A	93.162	117	8	0	1	117	8266023	8266139	4.260000e-39	172
16	TraesCS1D01G406100	chr3A	77.100	738	124	34	1542	2261	535823333	535822623	5.030000e-103	385
17	TraesCS1D01G406100	chr5D	93.130	131	9	0	1	131	291500947	291501077	3.270000e-45	193
18	TraesCS1D01G406100	chr5B	93.130	131	9	0	1	131	332202871	332203001	3.270000e-45	193
19	TraesCS1D01G406100	chr5A	92.366	131	10	0	1	131	383883027	383883157	1.520000e-43	187
20	TraesCS1D01G406100	chr7D	91.473	129	11	0	1	129	477072426	477072298	9.170000e-41	178
21	TraesCS1D01G406100	chr7B	91.473	129	11	0	1	129	501508635	501508507	9.170000e-41	178
22	TraesCS1D01G406100	chr7A	92.063	126	10	0	1	126	518809555	518809680	9.170000e-41	178

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G406100	chr1D	470076571	470079785	3214	False	5938	5938	100.000	1	3215	1	chr1D.!!$F1	3214
1	TraesCS1D01G406100	chr1D	470124139	470125574	1435	False	1280	1280	83.025	964	2402	1	chr1D.!!$F2	1438
2	TraesCS1D01G406100	chr1D	470183964	470185424	1460	False	1090	1090	80.463	992	2433	1	chr1D.!!$F3	1441
3	TraesCS1D01G406100	chr1D	470190083	470191283	1200	False	1038	1038	82.455	969	2170	1	chr1D.!!$F4	1201
4	TraesCS1D01G406100	chr1D	470198453	470199742	1289	False	885	885	79.462	1041	2310	1	chr1D.!!$F5	1269
5	TraesCS1D01G406100	chr1B	652458812	652461957	3145	False	4028	4028	89.763	1	3215	1	chr1B.!!$F1	3214
6	TraesCS1D01G406100	chr1B	652485950	652487333	1383	False	1264	1264	83.511	1027	2402	1	chr1B.!!$F2	1375
7	TraesCS1D01G406100	chr1B	652569911	652571519	1608	False	1147	1147	79.866	960	2572	1	chr1B.!!$F3	1612
8	TraesCS1D01G406100	chr1B	652633131	652634470	1339	False	931	931	79.661	991	2315	1	chr1B.!!$F5	1324
9	TraesCS1D01G406100	chr1A	563685736	563688937	3201	False	3936	3936	89.148	1	3215	1	chr1A.!!$F2	3214
10	TraesCS1D01G406100	chr1A	563765409	563766845	1436	False	1310	1310	83.356	964	2402	1	chr1A.!!$F3	1438
11	TraesCS1D01G406100	chr1A	563783580	563785021	1441	False	1175	1175	81.619	964	2402	1	chr1A.!!$F5	1438
12	TraesCS1D01G406100	chr1A	563774086	563775521	1435	False	1059	1059	80.234	970	2402	1	chr1A.!!$F4	1432
13	TraesCS1D01G406100	chr1A	563791354	563792253	899	False	920	920	85.165	968	1873	1	chr1A.!!$F6	905
14	TraesCS1D01G406100	chr3A	535822623	535823333	710	True	385	385	77.100	1542	2261	1	chr3A.!!$R1	719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
914	953	0.445436	GCTTCTGTGCCGTGATTCTG	59.555	55.0	0.0	0.0	0.0	3.02	F
1358	1422	0.318762	GAAACAGTGACGCTCCCTCT	59.681	55.0	0.0	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1971	2056	0.179000	ACCTTCGCCCTAGAAGCATG	59.821	55.0	5.69	0.0	44.56	4.06	R
2770	2950	0.386476	CCACCATGCCAAATCATCGG	59.614	55.0	0.00	0.0	0.00	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
217	226	1.221293	CTCTCCTCCTTGCTGCTGG	59.779	63.158	0.00	3.48	0.00	4.85
219	228	1.376942	CTCCTCCTTGCTGCTGGTG	60.377	63.158	0.00	4.46	0.00	4.17
228	237	3.738246	CTGCTGGTGCTGCTGCTG	61.738	66.667	17.00	0.77	40.48	4.41
231	240	3.738246	CTGGTGCTGCTGCTGCTG	61.738	66.667	27.67	16.73	40.48	4.41
237	246	3.669686	CTGCTGCTGCTGCTTCTT	58.330	55.556	27.67	0.00	40.48	2.52
277	286	4.622456	CGGCCGTGGTTGTTGTGC	62.622	66.667	19.50	0.00	0.00	4.57
371	389	4.210331	CCAAGGGGAATGAGAAATGTAGG	58.790	47.826	0.00	0.00	35.59	3.18
373	391	5.104109	CCAAGGGGAATGAGAAATGTAGGTA	60.104	44.000	0.00	0.00	35.59	3.08
374	392	5.896073	AGGGGAATGAGAAATGTAGGTAG	57.104	43.478	0.00	0.00	0.00	3.18
375	393	4.660771	AGGGGAATGAGAAATGTAGGTAGG	59.339	45.833	0.00	0.00	0.00	3.18
376	394	4.390264	GGGAATGAGAAATGTAGGTAGGC	58.610	47.826	0.00	0.00	0.00	3.93
377	395	4.390264	GGAATGAGAAATGTAGGTAGGCC	58.610	47.826	0.00	0.00	0.00	5.19
380	398	2.771943	TGAGAAATGTAGGTAGGCCCTG	59.228	50.000	0.00	0.00	45.81	4.45
381	399	3.039011	GAGAAATGTAGGTAGGCCCTGA	58.961	50.000	0.00	0.00	45.81	3.86
382	400	3.041946	AGAAATGTAGGTAGGCCCTGAG	58.958	50.000	0.00	0.00	45.81	3.35
383	401	1.132500	AATGTAGGTAGGCCCTGAGC	58.868	55.000	0.00	0.00	45.81	4.26
384	402	1.115930	ATGTAGGTAGGCCCTGAGCG	61.116	60.000	0.00	0.00	45.81	5.03
385	403	1.455217	GTAGGTAGGCCCTGAGCGA	60.455	63.158	0.00	0.00	45.81	4.93
386	404	1.455217	TAGGTAGGCCCTGAGCGAC	60.455	63.158	0.00	0.00	45.81	5.19
413	431	3.479203	CAGCCCAGCCCATACGGA	61.479	66.667	0.00	0.00	0.00	4.69
414	432	3.480133	AGCCCAGCCCATACGGAC	61.480	66.667	0.00	0.00	0.00	4.79
451	469	1.337817	CGCTCACTCGGTTCACTTCG	61.338	60.000	0.00	0.00	0.00	3.79
474	492	2.033194	GTCCTTCCCGTTCGGCAAG	61.033	63.158	7.83	7.83	0.00	4.01
598	625	0.597118	GCGCTGCTCTCTCTGGTATG	60.597	60.000	0.00	0.00	0.00	2.39
599	626	0.743688	CGCTGCTCTCTCTGGTATGT	59.256	55.000	0.00	0.00	0.00	2.29
642	669	3.385749	TTCCGCATTCCTCTCCCGC	62.386	63.158	0.00	0.00	0.00	6.13
643	670	3.854669	CCGCATTCCTCTCCCGCT	61.855	66.667	0.00	0.00	0.00	5.52
644	671	2.279784	CGCATTCCTCTCCCGCTC	60.280	66.667	0.00	0.00	0.00	5.03
645	672	2.279784	GCATTCCTCTCCCGCTCG	60.280	66.667	0.00	0.00	0.00	5.03
646	673	2.279784	CATTCCTCTCCCGCTCGC	60.280	66.667	0.00	0.00	0.00	5.03
647	674	2.443016	ATTCCTCTCCCGCTCGCT	60.443	61.111	0.00	0.00	0.00	4.93
648	675	2.494530	ATTCCTCTCCCGCTCGCTC	61.495	63.158	0.00	0.00	0.00	5.03
758	797	3.222855	CGCCTCTGATCTCGGGCT	61.223	66.667	16.74	0.00	42.13	5.19
766	805	0.757188	TGATCTCGGGCTTCCTCTCC	60.757	60.000	0.00	0.00	0.00	3.71
772	811	1.992277	GGGCTTCCTCTCCTGCTCA	60.992	63.158	0.00	0.00	0.00	4.26
793	832	3.647771	GGGGTGTGGGTCTGGGAC	61.648	72.222	0.00	0.00	0.00	4.46
794	833	2.529389	GGGTGTGGGTCTGGGACT	60.529	66.667	0.00	0.00	32.47	3.85
795	834	2.750350	GGTGTGGGTCTGGGACTG	59.250	66.667	0.00	0.00	32.47	3.51
796	835	2.750350	GTGTGGGTCTGGGACTGG	59.250	66.667	0.00	0.00	32.47	4.00
797	836	2.529136	TGTGGGTCTGGGACTGGG	60.529	66.667	0.00	0.00	32.47	4.45
881	920	3.793144	GCCTCTGCGCAACCGAAG	61.793	66.667	13.05	0.00	41.69	3.79
891	930	2.111878	AACCGAAGTGCTGCTGCT	59.888	55.556	17.00	0.00	40.48	4.24
893	932	4.099170	CCGAAGTGCTGCTGCTGC	62.099	66.667	22.51	22.51	40.48	5.25
894	933	3.048475	CGAAGTGCTGCTGCTGCT	61.048	61.111	27.67	11.62	40.48	4.24
895	934	2.561885	GAAGTGCTGCTGCTGCTG	59.438	61.111	27.67	16.73	40.48	4.41
905	944	2.979197	CTGCTGCTGCTTCTGTGCC	61.979	63.158	17.00	0.00	40.48	5.01
908	947	2.962827	CTGCTGCTTCTGTGCCGTG	61.963	63.158	0.00	0.00	0.00	4.94
914	953	0.445436	GCTTCTGTGCCGTGATTCTG	59.555	55.000	0.00	0.00	0.00	3.02
946	989	2.472029	TGGTTGGAATGGTTGGTGTTT	58.528	42.857	0.00	0.00	0.00	2.83
1358	1422	0.318762	GAAACAGTGACGCTCCCTCT	59.681	55.000	0.00	0.00	0.00	3.69
1508	1581	1.009829	CTAATCCTGTGCTCGCCAAC	58.990	55.000	0.00	0.00	0.00	3.77
2112	2209	2.210116	GAGAACACTTCTTTCGGCACA	58.790	47.619	0.00	0.00	40.87	4.57
2348	2476	5.633117	TCTGACCGTGGTATATGTATGGTA	58.367	41.667	0.00	0.00	0.00	3.25
2472	2608	4.994852	TGTCTGAACTAGTAATTGTGGTGC	59.005	41.667	0.00	0.00	0.00	5.01
2522	2673	1.302832	GCTGTTGCCTGTGCCTACT	60.303	57.895	0.00	0.00	36.33	2.57
2574	2725	5.719563	TCTGTATCTTTGACATGGTGGTCTA	59.280	40.000	0.00	0.00	38.61	2.59
2657	2809	1.606606	GTCGTTAATGTGCAAGCTGC	58.393	50.000	0.00	0.00	45.29	5.25
2659	2811	2.415168	GTCGTTAATGTGCAAGCTGCTA	59.585	45.455	0.90	0.00	45.31	3.49
2660	2812	3.070748	TCGTTAATGTGCAAGCTGCTAA	58.929	40.909	0.90	0.00	45.31	3.09
2661	2813	3.120338	TCGTTAATGTGCAAGCTGCTAAC	60.120	43.478	0.90	2.75	45.31	2.34
2662	2814	3.120199	CGTTAATGTGCAAGCTGCTAACT	60.120	43.478	0.90	0.00	45.31	2.24
2663	2815	4.161333	GTTAATGTGCAAGCTGCTAACTG	58.839	43.478	0.90	0.00	45.31	3.16
2664	2816	0.524862	ATGTGCAAGCTGCTAACTGC	59.475	50.000	15.90	15.90	45.31	4.40
2745	2899	6.176975	TGTGCGTATGGAAGATGTTTAAAG	57.823	37.500	0.00	0.00	0.00	1.85
2751	2931	2.739913	TGGAAGATGTTTAAAGCGGTCG	59.260	45.455	0.00	0.00	0.00	4.79
2808	2988	1.692519	GGTGTGTGACTCCCTGTAGTT	59.307	52.381	0.00	0.00	0.00	2.24
2831	3011	8.903820	AGTTGTAGATTTGTTTTTAGCTGAACT	58.096	29.630	0.00	0.00	0.00	3.01
2852	3035	8.481314	TGAACTAGCTATCTTTTGTGATGATCT	58.519	33.333	0.00	0.00	0.00	2.75
2883	3066	1.532868	GTGCTGTTAGTGTGGCTTGAG	59.467	52.381	0.00	0.00	0.00	3.02
2895	3078	3.825585	TGTGGCTTGAGCACATATTTCAA	59.174	39.130	5.24	0.00	44.36	2.69
2896	3079	4.463539	TGTGGCTTGAGCACATATTTCAAT	59.536	37.500	5.24	0.00	44.36	2.57
2961	3145	0.899720	TAGACGGTGGGACATGTTCC	59.100	55.000	17.13	17.13	44.52	3.62
2972	3156	6.833933	GGTGGGACATGTTCCTAGATAATTTT	59.166	38.462	24.02	0.00	45.09	1.82
3031	3216	9.142515	CATAAAAGCTGCAAGAACATTTTATGA	57.857	29.630	22.92	1.89	42.38	2.15
3032	3217	7.412137	AAAAGCTGCAAGAACATTTTATGAC	57.588	32.000	1.02	0.00	34.07	3.06
3043	3228	8.893563	AGAACATTTTATGACCCTTTTATGGA	57.106	30.769	0.00	0.00	0.00	3.41
3091	3276	8.757982	ATTGTACAAGATATCTGCTGGAAAAT	57.242	30.769	14.65	2.72	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
150	159	0.798771	CGCCGACGAGGAAGAAGAAG	60.799	60.000	0.00	0.00	45.00	2.85
151	160	1.211969	CGCCGACGAGGAAGAAGAA	59.788	57.895	0.00	0.00	45.00	2.52
152	161	2.697761	CCGCCGACGAGGAAGAAGA	61.698	63.158	0.00	0.00	45.00	2.87
192	201	2.756283	AAGGAGGAGAGGCCGACG	60.756	66.667	0.00	0.00	43.43	5.12
193	202	2.896443	CAAGGAGGAGAGGCCGAC	59.104	66.667	0.00	0.00	43.43	4.79
202	211	2.752358	CACCAGCAGCAAGGAGGA	59.248	61.111	10.66	0.00	0.00	3.71
225	234	1.372623	GCCAACAAGAAGCAGCAGC	60.373	57.895	0.00	0.00	42.56	5.25
228	237	1.174712	TCCAGCCAACAAGAAGCAGC	61.175	55.000	0.00	0.00	0.00	5.25
229	238	1.542492	ATCCAGCCAACAAGAAGCAG	58.458	50.000	0.00	0.00	0.00	4.24
231	240	2.991250	TCTATCCAGCCAACAAGAAGC	58.009	47.619	0.00	0.00	0.00	3.86
232	241	3.806521	CGATCTATCCAGCCAACAAGAAG	59.193	47.826	0.00	0.00	0.00	2.85
233	242	3.197766	ACGATCTATCCAGCCAACAAGAA	59.802	43.478	0.00	0.00	0.00	2.52
234	243	2.766263	ACGATCTATCCAGCCAACAAGA	59.234	45.455	0.00	0.00	0.00	3.02
235	244	3.185246	ACGATCTATCCAGCCAACAAG	57.815	47.619	0.00	0.00	0.00	3.16
236	245	4.558697	CGATACGATCTATCCAGCCAACAA	60.559	45.833	0.00	0.00	0.00	2.83
237	246	3.057526	CGATACGATCTATCCAGCCAACA	60.058	47.826	0.00	0.00	0.00	3.33
355	373	4.390264	GGCCTACCTACATTTCTCATTCC	58.610	47.826	0.00	0.00	0.00	3.01
356	374	4.390264	GGGCCTACCTACATTTCTCATTC	58.610	47.826	0.84	0.00	35.85	2.67
371	389	4.208686	CGGTCGCTCAGGGCCTAC	62.209	72.222	5.28	0.00	37.74	3.18
414	432	4.517934	CAGCCCAGGCCCATCCAG	62.518	72.222	4.70	0.00	43.17	3.86
465	483	3.435186	GCTCCTGGCTTGCCGAAC	61.435	66.667	7.18	0.00	38.06	3.95
466	484	4.722700	GGCTCCTGGCTTGCCGAA	62.723	66.667	7.18	0.00	41.46	4.30
469	487	4.357279	ACTGGCTCCTGGCTTGCC	62.357	66.667	15.11	15.11	46.26	4.52
470	488	2.749441	GACTGGCTCCTGGCTTGC	60.749	66.667	0.00	0.00	41.46	4.01
471	489	1.673665	GTGACTGGCTCCTGGCTTG	60.674	63.158	0.34	0.00	41.46	4.01
474	492	2.359230	GTGTGACTGGCTCCTGGC	60.359	66.667	0.00	0.00	40.90	4.85
598	625	1.395826	CGAGGATGAGGGGGAGTCAC	61.396	65.000	0.00	0.00	0.00	3.67
599	626	1.075970	CGAGGATGAGGGGGAGTCA	60.076	63.158	0.00	0.00	0.00	3.41
713	752	2.496817	GGAGCAGGCGTCGATCTT	59.503	61.111	0.00	0.00	0.00	2.40
736	775	2.725008	GAGATCAGAGGCGTCCCG	59.275	66.667	2.06	0.00	35.76	5.14
795	834	3.381333	GACGGACGGATGGAACCCC	62.381	68.421	0.00	0.00	0.00	4.95
796	835	2.186125	GACGGACGGATGGAACCC	59.814	66.667	0.00	0.00	0.00	4.11
797	836	2.202703	CGACGGACGGATGGAACC	60.203	66.667	0.00	0.00	38.46	3.62
878	917	2.561885	CAGCAGCAGCAGCACTTC	59.438	61.111	12.92	0.00	45.49	3.01
891	930	2.736579	ATCACGGCACAGAAGCAGCA	62.737	55.000	0.00	0.00	35.83	4.41
893	932	0.445436	GAATCACGGCACAGAAGCAG	59.555	55.000	0.00	0.00	35.83	4.24
894	933	0.035317	AGAATCACGGCACAGAAGCA	59.965	50.000	0.00	0.00	35.83	3.91
895	934	0.445436	CAGAATCACGGCACAGAAGC	59.555	55.000	0.00	0.00	0.00	3.86
897	936	0.035317	AGCAGAATCACGGCACAGAA	59.965	50.000	0.00	0.00	41.88	3.02
898	937	0.390340	GAGCAGAATCACGGCACAGA	60.390	55.000	0.00	0.00	41.88	3.41
899	938	1.690283	CGAGCAGAATCACGGCACAG	61.690	60.000	0.00	0.00	41.88	3.66
900	939	1.737735	CGAGCAGAATCACGGCACA	60.738	57.895	0.00	0.00	41.88	4.57
905	944	1.010935	ACACAGCGAGCAGAATCACG	61.011	55.000	0.00	0.00	0.00	4.35
908	947	1.135859	CCAAACACAGCGAGCAGAATC	60.136	52.381	0.00	0.00	0.00	2.52
914	953	1.008538	CCAACCAAACACAGCGAGC	60.009	57.895	0.00	0.00	0.00	5.03
946	989	1.150536	GACCACTGCCCTTTCACCA	59.849	57.895	0.00	0.00	0.00	4.17
998	1053	0.177604	CTTCTTCTCCGCTGCCATCT	59.822	55.000	0.00	0.00	0.00	2.90
1358	1422	0.984230	AAGCCGGACATTGGAGAGAA	59.016	50.000	5.05	0.00	0.00	2.87
1508	1581	1.623359	GACTAGTGCAGCAACGAGAG	58.377	55.000	0.00	0.00	0.00	3.20
1971	2056	0.179000	ACCTTCGCCCTAGAAGCATG	59.821	55.000	5.69	0.00	44.56	4.06
1975	2060	0.179097	GAGCACCTTCGCCCTAGAAG	60.179	60.000	0.00	0.14	45.26	2.85
2112	2209	6.212388	GGACCCTGTCAGATCTTATGTCATAT	59.788	42.308	0.00	0.00	33.68	1.78
2348	2476	2.172505	TCCACTGAACACCACATCAACT	59.827	45.455	0.00	0.00	0.00	3.16
2543	2694	7.388776	CACCATGTCAAAGATACAGAGAAGAAA	59.611	37.037	0.00	0.00	0.00	2.52
2634	2785	2.162208	AGCTTGCACATTAACGACCATG	59.838	45.455	0.00	0.00	0.00	3.66
2676	2828	7.551585	TGAAGACCAATGCAGTTCTTTAAAAA	58.448	30.769	2.88	0.00	0.00	1.94
2677	2829	7.106439	TGAAGACCAATGCAGTTCTTTAAAA	57.894	32.000	2.88	0.00	0.00	1.52
2678	2830	6.707440	TGAAGACCAATGCAGTTCTTTAAA	57.293	33.333	2.88	0.00	0.00	1.52
2679	2831	6.321181	AGTTGAAGACCAATGCAGTTCTTTAA	59.679	34.615	2.88	2.80	37.08	1.52
2680	2832	5.827797	AGTTGAAGACCAATGCAGTTCTTTA	59.172	36.000	2.88	0.00	37.08	1.85
2681	2833	4.646492	AGTTGAAGACCAATGCAGTTCTTT	59.354	37.500	2.88	0.00	37.08	2.52
2682	2834	4.037208	CAGTTGAAGACCAATGCAGTTCTT	59.963	41.667	0.92	0.92	37.08	2.52
2683	2835	3.567164	CAGTTGAAGACCAATGCAGTTCT	59.433	43.478	0.00	0.00	37.08	3.01
2684	2836	3.304928	CCAGTTGAAGACCAATGCAGTTC	60.305	47.826	0.00	0.00	37.08	3.01
2763	2943	4.984161	CCATGCCAAATCATCGGAAATTAC	59.016	41.667	0.00	0.00	0.00	1.89
2766	2946	3.033184	ACCATGCCAAATCATCGGAAAT	58.967	40.909	0.00	0.00	0.00	2.17
2768	2948	1.750206	CACCATGCCAAATCATCGGAA	59.250	47.619	0.00	0.00	0.00	4.30
2770	2950	0.386476	CCACCATGCCAAATCATCGG	59.614	55.000	0.00	0.00	0.00	4.18
2830	3010	8.068977	GCAAAGATCATCACAAAAGATAGCTAG	58.931	37.037	0.00	0.00	0.00	3.42
2831	3011	7.254556	CGCAAAGATCATCACAAAAGATAGCTA	60.255	37.037	0.00	0.00	0.00	3.32
2832	3012	6.457934	CGCAAAGATCATCACAAAAGATAGCT	60.458	38.462	0.00	0.00	0.00	3.32
2833	3013	5.680229	CGCAAAGATCATCACAAAAGATAGC	59.320	40.000	0.00	0.00	0.00	2.97
2834	3014	5.680229	GCGCAAAGATCATCACAAAAGATAG	59.320	40.000	0.30	0.00	0.00	2.08
2835	3015	5.123661	TGCGCAAAGATCATCACAAAAGATA	59.876	36.000	8.16	0.00	0.00	1.98
2836	3016	4.082625	TGCGCAAAGATCATCACAAAAGAT	60.083	37.500	8.16	0.00	0.00	2.40
2837	3017	3.252944	TGCGCAAAGATCATCACAAAAGA	59.747	39.130	8.16	0.00	0.00	2.52
2838	3018	3.567530	TGCGCAAAGATCATCACAAAAG	58.432	40.909	8.16	0.00	0.00	2.27
2839	3019	3.004629	ACTGCGCAAAGATCATCACAAAA	59.995	39.130	13.05	0.00	0.00	2.44
2840	3020	2.553602	ACTGCGCAAAGATCATCACAAA	59.446	40.909	13.05	0.00	0.00	2.83
2896	3079	9.995003	AAAAATGCTCCATACATGAAAAAGTTA	57.005	25.926	0.00	0.00	0.00	2.24
2925	3109	4.201851	CCGTCTAATGATTGCTTTGACAGG	60.202	45.833	0.00	0.00	0.00	4.00
2930	3114	3.181497	CCCACCGTCTAATGATTGCTTTG	60.181	47.826	0.00	0.00	0.00	2.77
3003	3188	5.473066	AATGTTCTTGCAGCTTTTATGGT	57.527	34.783	0.00	0.00	0.00	3.55
3004	3189	6.790285	AAAATGTTCTTGCAGCTTTTATGG	57.210	33.333	0.00	0.00	0.00	2.74
3006	3191	9.143631	GTCATAAAATGTTCTTGCAGCTTTTAT	57.856	29.630	0.00	0.00	32.09	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.