Multiple sequence alignment - TraesCS1D01G404800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G404800 chr1D 100.000 2734 0 0 1 2734 469794419 469797152 0.000000e+00 5049.0
1 TraesCS1D01G404800 chr1B 93.132 2155 93 27 546 2681 649669619 649671737 0.000000e+00 3109.0
2 TraesCS1D01G404800 chr1B 87.056 394 37 7 1 391 649668702 649669084 1.500000e-117 433.0
3 TraesCS1D01G404800 chr1B 91.791 134 6 3 389 521 649669120 649669249 6.010000e-42 182.0
4 TraesCS1D01G404800 chr1B 90.909 44 4 0 2685 2728 649671765 649671808 2.940000e-05 60.2
5 TraesCS1D01G404800 chr1A 90.740 2365 136 33 401 2734 562901758 562904070 0.000000e+00 3077.0
6 TraesCS1D01G404800 chr1A 89.340 394 39 2 1 391 562901287 562901680 2.450000e-135 492.0
7 TraesCS1D01G404800 chr6D 90.225 1023 58 19 1057 2061 17043067 17042069 0.000000e+00 1297.0
8 TraesCS1D01G404800 chr7B 90.186 1019 59 19 1057 2061 722094274 722095265 0.000000e+00 1290.0
9 TraesCS1D01G404800 chr5B 89.422 1021 66 26 1057 2058 328273708 328274705 0.000000e+00 1249.0
10 TraesCS1D01G404800 chr3B 89.412 1020 65 22 1059 2061 379653643 379654636 0.000000e+00 1245.0
11 TraesCS1D01G404800 chr3B 88.965 1024 71 17 1057 2061 367032565 367031565 0.000000e+00 1227.0
12 TraesCS1D01G404800 chr6B 89.052 1023 70 20 1057 2061 129701010 129702008 0.000000e+00 1230.0
13 TraesCS1D01G404800 chr6B 93.750 192 4 4 1608 1797 578775366 578775551 5.760000e-72 281.0
14 TraesCS1D01G404800 chr6B 89.583 48 3 2 2050 2095 114900611 114900658 2.940000e-05 60.2
15 TraesCS1D01G404800 chr3A 89.041 1022 71 22 1057 2061 128659263 128658266 0.000000e+00 1229.0
16 TraesCS1D01G404800 chr2A 88.748 1022 74 19 1057 2061 276858785 276859782 0.000000e+00 1212.0
17 TraesCS1D01G404800 chr4A 88.650 1022 75 20 1057 2061 566589692 566588695 0.000000e+00 1206.0
18 TraesCS1D01G404800 chr4A 88.650 1022 75 20 1057 2061 566610394 566609397 0.000000e+00 1206.0
19 TraesCS1D01G404800 chr5A 88.356 1022 67 21 1057 2061 69536074 69537060 0.000000e+00 1181.0
20 TraesCS1D01G404800 chr6A 89.640 695 47 12 1375 2061 214075708 214075031 0.000000e+00 861.0
21 TraesCS1D01G404800 chr7D 95.288 191 4 2 1608 1797 561875902 561876088 5.720000e-77 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G404800 chr1D 469794419 469797152 2733 False 5049.00 5049 100.000 1 2734 1 chr1D.!!$F1 2733
1 TraesCS1D01G404800 chr1B 649668702 649671808 3106 False 946.05 3109 90.722 1 2728 4 chr1B.!!$F1 2727
2 TraesCS1D01G404800 chr1A 562901287 562904070 2783 False 1784.50 3077 90.040 1 2734 2 chr1A.!!$F1 2733
3 TraesCS1D01G404800 chr6D 17042069 17043067 998 True 1297.00 1297 90.225 1057 2061 1 chr6D.!!$R1 1004
4 TraesCS1D01G404800 chr7B 722094274 722095265 991 False 1290.00 1290 90.186 1057 2061 1 chr7B.!!$F1 1004
5 TraesCS1D01G404800 chr5B 328273708 328274705 997 False 1249.00 1249 89.422 1057 2058 1 chr5B.!!$F1 1001
6 TraesCS1D01G404800 chr3B 379653643 379654636 993 False 1245.00 1245 89.412 1059 2061 1 chr3B.!!$F1 1002
7 TraesCS1D01G404800 chr3B 367031565 367032565 1000 True 1227.00 1227 88.965 1057 2061 1 chr3B.!!$R1 1004
8 TraesCS1D01G404800 chr6B 129701010 129702008 998 False 1230.00 1230 89.052 1057 2061 1 chr6B.!!$F2 1004
9 TraesCS1D01G404800 chr3A 128658266 128659263 997 True 1229.00 1229 89.041 1057 2061 1 chr3A.!!$R1 1004
10 TraesCS1D01G404800 chr2A 276858785 276859782 997 False 1212.00 1212 88.748 1057 2061 1 chr2A.!!$F1 1004
11 TraesCS1D01G404800 chr4A 566588695 566589692 997 True 1206.00 1206 88.650 1057 2061 1 chr4A.!!$R1 1004
12 TraesCS1D01G404800 chr4A 566609397 566610394 997 True 1206.00 1206 88.650 1057 2061 1 chr4A.!!$R2 1004
13 TraesCS1D01G404800 chr5A 69536074 69537060 986 False 1181.00 1181 88.356 1057 2061 1 chr5A.!!$F1 1004
14 TraesCS1D01G404800 chr6A 214075031 214075708 677 True 861.00 861 89.640 1375 2061 1 chr6A.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 514 0.033228 CAGCAAAAATGCGTCCCCAA 59.967 50.0 0.0 0.0 40.27 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2576 1.079503 CGGCTTAGCTTGAGTGTTCC 58.92 55.0 3.59 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.429547 GCTTCGGCTCTTCTATGTTGAGA 60.430 47.826 0.00 0.00 38.08 3.27
46 47 6.763355 TCTATGTTGAGAAAGATAGCATCCC 58.237 40.000 0.00 0.00 0.00 3.85
77 78 6.253512 TCGTCATCAAAACTGAACTCATATCG 59.746 38.462 0.00 0.00 0.00 2.92
85 86 2.297315 CTGAACTCATATCGGCCAGCTA 59.703 50.000 2.24 0.00 0.00 3.32
89 90 2.028658 ACTCATATCGGCCAGCTACATG 60.029 50.000 2.24 0.00 0.00 3.21
108 110 2.927429 TGTTGCCATTTTTCATCGACG 58.073 42.857 0.00 0.00 0.00 5.12
112 114 2.354510 TGCCATTTTTCATCGACGATCC 59.645 45.455 7.54 0.00 0.00 3.36
118 120 6.458751 CCATTTTTCATCGACGATCCATTTCT 60.459 38.462 7.54 0.00 0.00 2.52
144 146 5.295292 CGTGAAGATTTTGTAGCTCATCCAT 59.705 40.000 0.00 0.00 0.00 3.41
238 241 2.547211 CGAAACATCCATGAGATCCAGC 59.453 50.000 0.00 0.00 30.59 4.85
243 246 3.263681 ACATCCATGAGATCCAGCATAGG 59.736 47.826 0.00 0.00 30.59 2.57
282 285 1.139058 GAATTCTCCTTCAGCGGGCTA 59.861 52.381 0.00 0.00 0.00 3.93
395 441 3.453717 TCTCCAGAGTTGCTTGCTATCAT 59.546 43.478 0.00 0.00 0.00 2.45
409 484 2.818432 GCTATCATGATGGCTTTCCCTG 59.182 50.000 30.49 5.59 41.38 4.45
410 485 2.376695 ATCATGATGGCTTTCCCTGG 57.623 50.000 7.59 0.00 0.00 4.45
436 511 0.390209 ATGCAGCAAAAATGCGTCCC 60.390 50.000 0.00 0.00 46.87 4.46
439 514 0.033228 CAGCAAAAATGCGTCCCCAA 59.967 50.000 0.00 0.00 40.27 4.12
443 518 2.159430 GCAAAAATGCGTCCCCAATTTC 59.841 45.455 0.00 0.00 0.00 2.17
444 519 3.397482 CAAAAATGCGTCCCCAATTTCA 58.603 40.909 0.00 0.00 0.00 2.69
445 520 3.979101 AAAATGCGTCCCCAATTTCAT 57.021 38.095 0.00 0.00 0.00 2.57
446 521 5.174395 CAAAAATGCGTCCCCAATTTCATA 58.826 37.500 0.00 0.00 0.00 2.15
447 522 4.654091 AAATGCGTCCCCAATTTCATAG 57.346 40.909 0.00 0.00 0.00 2.23
448 523 2.799126 TGCGTCCCCAATTTCATAGT 57.201 45.000 0.00 0.00 0.00 2.12
449 524 3.916359 TGCGTCCCCAATTTCATAGTA 57.084 42.857 0.00 0.00 0.00 1.82
574 994 0.321387 CATCATGCTCCTCATCCCCG 60.321 60.000 0.00 0.00 31.79 5.73
592 1012 0.972983 CGTCCTCCACACCTGATCCT 60.973 60.000 0.00 0.00 0.00 3.24
923 1346 4.794439 CGCGCCAGTGACGGATGA 62.794 66.667 0.00 0.00 0.00 2.92
1046 1480 2.597510 GCACCCAGCGGAAAAGGT 60.598 61.111 0.00 0.00 0.00 3.50
1077 1511 2.098443 GGAAGAAGAAGAGCTCGATCGT 59.902 50.000 15.94 9.29 0.00 3.73
1575 2023 5.407502 TCTGAGCAAAATCAAAGATGCATG 58.592 37.500 2.46 0.00 41.18 4.06
1577 2025 3.267483 AGCAAAATCAAAGATGCATGCC 58.733 40.909 16.68 0.00 41.18 4.40
1692 2145 2.098280 TGAGTTACTGCTGCTCGATCTC 59.902 50.000 0.00 4.73 32.32 2.75
1729 2182 9.778741 TGATTGGGATCAATAATGAAGTACTAC 57.221 33.333 0.00 0.00 43.08 2.73
1732 2185 7.506114 TGGGATCAATAATGAAGTACTACCAC 58.494 38.462 0.00 0.00 39.49 4.16
1733 2186 7.347222 TGGGATCAATAATGAAGTACTACCACT 59.653 37.037 0.00 0.00 39.49 4.00
1734 2187 8.867097 GGGATCAATAATGAAGTACTACCACTA 58.133 37.037 0.00 0.00 39.49 2.74
1735 2188 9.915629 GGATCAATAATGAAGTACTACCACTAG 57.084 37.037 0.00 0.00 39.49 2.57
1743 2196 6.839454 TGAAGTACTACCACTAGCTAGCTAT 58.161 40.000 24.36 12.42 0.00 2.97
1744 2197 7.971201 TGAAGTACTACCACTAGCTAGCTATA 58.029 38.462 24.36 12.89 0.00 1.31
1777 2230 6.959954 AGGCTTAAATTCTTTTGATTAGGGGT 59.040 34.615 0.00 0.00 0.00 4.95
2037 2499 0.968405 TTGTTGCAGCTGATTTCCCC 59.032 50.000 20.43 0.00 0.00 4.81
2040 2502 0.114954 TTGCAGCTGATTTCCCCCTT 59.885 50.000 20.43 0.00 0.00 3.95
2107 2570 6.874297 TTTTGACACTATACGTATGGTTCG 57.126 37.500 20.57 13.47 0.00 3.95
2131 2594 1.079503 CGGAACACTCAAGCTAAGCC 58.920 55.000 0.00 0.00 0.00 4.35
2188 2651 3.723260 TCTTATCAGTGCAACAACGACA 58.277 40.909 0.00 0.00 41.43 4.35
2200 2663 1.204792 CAACGACATGTGACGTGTGA 58.795 50.000 16.13 0.00 44.61 3.58
2201 2664 1.792367 CAACGACATGTGACGTGTGAT 59.208 47.619 16.13 0.00 44.61 3.06
2202 2665 2.148916 ACGACATGTGACGTGTGATT 57.851 45.000 16.13 0.00 43.82 2.57
2203 2666 2.479837 ACGACATGTGACGTGTGATTT 58.520 42.857 16.13 0.00 43.82 2.17
2306 2775 9.342308 TGATACATTCCTTATGAAGGTTGATTC 57.658 33.333 13.96 11.00 45.14 2.52
2324 2793 4.527427 TGATTCATTCATTTCAACCCTGCA 59.473 37.500 0.00 0.00 0.00 4.41
2365 2840 5.683681 TGGAGTGCTCAAATTGCTATGATA 58.316 37.500 1.41 0.00 0.00 2.15
2399 2874 3.418684 AGAAGCCGTTTCCATTGTAGT 57.581 42.857 0.00 0.00 36.40 2.73
2400 2875 4.546829 AGAAGCCGTTTCCATTGTAGTA 57.453 40.909 0.00 0.00 36.40 1.82
2401 2876 4.504858 AGAAGCCGTTTCCATTGTAGTAG 58.495 43.478 0.00 0.00 36.40 2.57
2402 2877 3.261981 AGCCGTTTCCATTGTAGTAGG 57.738 47.619 0.00 0.00 0.00 3.18
2432 2908 5.543507 TGGTTGTTTATTTGCTCATGGTT 57.456 34.783 0.00 0.00 0.00 3.67
2433 2909 5.923204 TGGTTGTTTATTTGCTCATGGTTT 58.077 33.333 0.00 0.00 0.00 3.27
2470 2946 1.180029 TGAGCCAACGTACCCTCTAC 58.820 55.000 9.66 0.00 0.00 2.59
2482 2958 1.224592 CCTCTACCCCACATGTGCC 59.775 63.158 20.81 0.00 0.00 5.01
2485 2961 0.546122 TCTACCCCACATGTGCCATC 59.454 55.000 20.81 0.00 0.00 3.51
2486 2962 0.466189 CTACCCCACATGTGCCATCC 60.466 60.000 20.81 0.00 0.00 3.51
2487 2963 0.918799 TACCCCACATGTGCCATCCT 60.919 55.000 20.81 1.60 0.00 3.24
2506 2988 8.164070 GCCATCCTTTTTCTCCTTCCTATAATA 58.836 37.037 0.00 0.00 0.00 0.98
2533 3015 0.303191 CAACGATGCAACGACACACA 59.697 50.000 23.89 0.00 37.03 3.72
2543 3025 2.102070 ACGACACACAACCAGAACAA 57.898 45.000 0.00 0.00 0.00 2.83
2547 3029 1.005450 ACACACAACCAGAACAACCCT 59.995 47.619 0.00 0.00 0.00 4.34
2570 3052 5.371115 AATGAACAACACGAATACCCAAG 57.629 39.130 0.00 0.00 0.00 3.61
2571 3053 3.142951 TGAACAACACGAATACCCAAGG 58.857 45.455 0.00 0.00 0.00 3.61
2572 3054 2.943036 ACAACACGAATACCCAAGGT 57.057 45.000 0.00 0.00 40.16 3.50
2573 3055 2.500229 ACAACACGAATACCCAAGGTG 58.500 47.619 0.00 0.00 36.19 4.00
2574 3056 2.158726 ACAACACGAATACCCAAGGTGT 60.159 45.455 0.00 0.00 43.12 4.16
2575 3057 3.071312 ACAACACGAATACCCAAGGTGTA 59.929 43.478 0.00 0.00 40.65 2.90
2576 3058 4.258543 CAACACGAATACCCAAGGTGTAT 58.741 43.478 0.00 0.00 40.65 2.29
2577 3059 3.869065 ACACGAATACCCAAGGTGTATG 58.131 45.455 0.00 0.00 39.82 2.39
2578 3060 2.612212 CACGAATACCCAAGGTGTATGC 59.388 50.000 0.00 0.00 36.19 3.14
2579 3061 2.504175 ACGAATACCCAAGGTGTATGCT 59.496 45.455 0.00 0.00 36.19 3.79
2580 3062 3.054655 ACGAATACCCAAGGTGTATGCTT 60.055 43.478 0.00 0.00 36.19 3.91
2581 3063 4.162698 ACGAATACCCAAGGTGTATGCTTA 59.837 41.667 0.00 0.00 36.19 3.09
2582 3064 4.510340 CGAATACCCAAGGTGTATGCTTAC 59.490 45.833 2.86 2.86 36.19 2.34
2590 3072 5.106555 CCAAGGTGTATGCTTACTGTCAAAG 60.107 44.000 10.74 0.00 0.00 2.77
2591 3073 4.579869 AGGTGTATGCTTACTGTCAAAGG 58.420 43.478 10.74 0.00 0.00 3.11
2597 3079 2.819608 TGCTTACTGTCAAAGGGAATGC 59.180 45.455 0.00 0.00 0.00 3.56
2600 3082 4.700213 GCTTACTGTCAAAGGGAATGCTAA 59.300 41.667 0.00 0.00 0.00 3.09
2617 3099 2.732366 CTAAGTCGATGATGTGTCGGG 58.268 52.381 0.00 0.00 39.45 5.14
2650 3132 2.695359 TCCACAACCAAGACGATAAGC 58.305 47.619 0.00 0.00 0.00 3.09
2681 3163 2.111384 TGTCAATGTAGAGAGCTCCCC 58.889 52.381 10.93 2.49 0.00 4.81
2682 3164 2.111384 GTCAATGTAGAGAGCTCCCCA 58.889 52.381 10.93 2.24 0.00 4.96
2683 3165 2.501723 GTCAATGTAGAGAGCTCCCCAA 59.498 50.000 10.93 0.00 0.00 4.12
2700 3206 3.498661 CCCCAAGGAGTTTAGAGCAACTT 60.499 47.826 0.00 0.00 37.11 2.66
2703 3209 4.821805 CCAAGGAGTTTAGAGCAACTTCAA 59.178 41.667 0.00 0.00 37.11 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.366916 CGACCAGAGGGATGCTATCTTT 59.633 50.000 0.00 0.00 38.05 2.52
46 47 3.653344 TCAGTTTTGATGACGACCAGAG 58.347 45.455 0.00 0.00 0.00 3.35
77 78 1.678635 TGGCAACATGTAGCTGGCC 60.679 57.895 17.12 15.86 46.17 5.36
89 90 3.196007 TCGTCGATGAAAAATGGCAAC 57.804 42.857 4.45 0.00 0.00 4.17
108 110 7.752695 ACAAAATCTTCACGTAGAAATGGATC 58.247 34.615 0.00 0.00 35.40 3.36
112 114 7.743104 AGCTACAAAATCTTCACGTAGAAATG 58.257 34.615 0.00 0.00 35.40 2.32
118 120 5.810587 GGATGAGCTACAAAATCTTCACGTA 59.189 40.000 0.00 0.00 0.00 3.57
144 146 5.296151 ACTTGAGGAAGTGACATCTTTCA 57.704 39.130 0.00 0.00 41.12 2.69
192 195 2.927856 ACCCGTGCACTCCCATCA 60.928 61.111 16.19 0.00 0.00 3.07
238 241 7.658261 TCGAGTTATTTGATCCTACACCTATG 58.342 38.462 0.00 0.00 0.00 2.23
243 246 8.649973 AGAATTCGAGTTATTTGATCCTACAC 57.350 34.615 0.00 0.00 0.00 2.90
282 285 4.616835 GCTTTGCCGAATGTTCTTCTTCAT 60.617 41.667 0.00 0.00 0.00 2.57
395 441 2.692709 TTTTCCAGGGAAAGCCATCA 57.307 45.000 12.83 0.00 43.75 3.07
574 994 2.035632 CTAGGATCAGGTGTGGAGGAC 58.964 57.143 0.00 0.00 0.00 3.85
592 1012 2.345760 GGACGCCGTGGAGGAACTA 61.346 63.158 0.00 0.00 41.55 2.24
888 1311 2.574399 GGCGAGCGTTTCTCTCCT 59.426 61.111 0.00 0.00 42.18 3.69
906 1329 4.794439 TCATCCGTCACTGGCGCG 62.794 66.667 0.00 0.00 0.00 6.86
907 1330 2.887568 CTCATCCGTCACTGGCGC 60.888 66.667 0.00 0.00 0.00 6.53
911 1334 0.241213 ACGTCACTCATCCGTCACTG 59.759 55.000 0.00 0.00 0.00 3.66
912 1335 1.467734 GTACGTCACTCATCCGTCACT 59.532 52.381 0.00 0.00 36.12 3.41
913 1336 1.789410 CGTACGTCACTCATCCGTCAC 60.789 57.143 7.22 0.00 36.12 3.67
914 1337 0.445043 CGTACGTCACTCATCCGTCA 59.555 55.000 7.22 0.00 36.12 4.35
915 1338 0.860618 GCGTACGTCACTCATCCGTC 60.861 60.000 17.90 0.00 36.12 4.79
916 1339 1.136147 GCGTACGTCACTCATCCGT 59.864 57.895 17.90 0.00 38.53 4.69
917 1340 1.585521 GGCGTACGTCACTCATCCG 60.586 63.158 16.32 0.00 0.00 4.18
918 1341 1.585521 CGGCGTACGTCACTCATCC 60.586 63.158 21.20 7.43 37.93 3.51
919 1342 2.222217 GCGGCGTACGTCACTCATC 61.222 63.158 21.20 0.00 46.52 2.92
920 1343 2.202570 GCGGCGTACGTCACTCAT 60.203 61.111 21.20 0.00 46.52 2.90
921 1344 2.791396 GAAGCGGCGTACGTCACTCA 62.791 60.000 21.20 0.00 46.52 3.41
922 1345 2.126580 AAGCGGCGTACGTCACTC 60.127 61.111 21.20 8.13 46.52 3.51
923 1346 2.126580 GAAGCGGCGTACGTCACT 60.127 61.111 21.20 13.23 46.52 3.41
1046 1480 2.025226 TCTTCTTCTTCCTCCTCCGCTA 60.025 50.000 0.00 0.00 0.00 4.26
1575 2023 3.892581 CGTAGTACCCCGTCCGGC 61.893 72.222 0.00 0.00 0.00 6.13
1577 2025 2.124736 TCCGTAGTACCCCGTCCG 60.125 66.667 0.00 0.00 0.00 4.79
1692 2145 3.453717 TGATCCCAATCAAGAGAGACTGG 59.546 47.826 0.00 0.00 38.97 4.00
1729 2182 9.005777 GCCTAACTATATATAGCTAGCTAGTGG 57.994 40.741 27.42 18.70 31.07 4.00
2037 2499 9.416284 AGAAGGAGTACTATAGAAGAAGAAAGG 57.584 37.037 6.78 0.00 0.00 3.11
2107 2570 2.617274 GCTTGAGTGTTCCGGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
2113 2576 1.079503 CGGCTTAGCTTGAGTGTTCC 58.920 55.000 3.59 0.00 0.00 3.62
2114 2577 1.079503 CCGGCTTAGCTTGAGTGTTC 58.920 55.000 3.59 0.00 0.00 3.18
2188 2651 5.005682 CGTGATGATAAATCACACGTCACAT 59.994 40.000 24.15 0.00 46.38 3.21
2200 2663 5.986135 GTGAGGTTAGCTCGTGATGATAAAT 59.014 40.000 6.94 0.00 0.00 1.40
2201 2664 5.348986 GTGAGGTTAGCTCGTGATGATAAA 58.651 41.667 6.94 0.00 0.00 1.40
2202 2665 4.202121 GGTGAGGTTAGCTCGTGATGATAA 60.202 45.833 6.94 0.00 0.00 1.75
2203 2666 3.318275 GGTGAGGTTAGCTCGTGATGATA 59.682 47.826 6.94 0.00 0.00 2.15
2236 2703 2.281484 GTGGTTGGCTTCCTGCGA 60.281 61.111 0.00 0.00 44.05 5.10
2289 2758 9.525409 GAAATGAATGAATCAACCTTCATAAGG 57.475 33.333 10.00 4.13 46.65 2.69
2342 2817 3.954200 TCATAGCAATTTGAGCACTCCA 58.046 40.909 0.00 0.00 0.00 3.86
2365 2840 3.201290 CGGCTTCTAGCAGATGTGAAAT 58.799 45.455 0.00 0.00 44.75 2.17
2399 2874 8.652290 AGCAAATAAACAACCAAATAAACCCTA 58.348 29.630 0.00 0.00 0.00 3.53
2400 2875 7.513856 AGCAAATAAACAACCAAATAAACCCT 58.486 30.769 0.00 0.00 0.00 4.34
2401 2876 7.442666 TGAGCAAATAAACAACCAAATAAACCC 59.557 33.333 0.00 0.00 0.00 4.11
2402 2877 8.371770 TGAGCAAATAAACAACCAAATAAACC 57.628 30.769 0.00 0.00 0.00 3.27
2432 2908 4.688413 GCTCAAACCAACAACACAAAAGAA 59.312 37.500 0.00 0.00 0.00 2.52
2433 2909 4.241681 GCTCAAACCAACAACACAAAAGA 58.758 39.130 0.00 0.00 0.00 2.52
2460 2936 1.485066 CACATGTGGGGTAGAGGGTAC 59.515 57.143 18.51 0.00 0.00 3.34
2506 2988 2.289274 TCGTTGCATCGTTGTTTCACAT 59.711 40.909 16.21 0.00 0.00 3.21
2533 3015 4.798882 TGTTCATTAGGGTTGTTCTGGTT 58.201 39.130 0.00 0.00 0.00 3.67
2543 3025 4.939439 GGTATTCGTGTTGTTCATTAGGGT 59.061 41.667 0.00 0.00 0.00 4.34
2547 3029 5.413213 CCTTGGGTATTCGTGTTGTTCATTA 59.587 40.000 0.00 0.00 0.00 1.90
2570 3052 3.689649 CCCTTTGACAGTAAGCATACACC 59.310 47.826 1.44 0.00 34.29 4.16
2571 3053 4.575885 TCCCTTTGACAGTAAGCATACAC 58.424 43.478 1.44 0.00 34.29 2.90
2572 3054 4.901197 TCCCTTTGACAGTAAGCATACA 57.099 40.909 1.44 0.00 34.29 2.29
2573 3055 5.449177 GCATTCCCTTTGACAGTAAGCATAC 60.449 44.000 0.00 0.00 0.00 2.39
2574 3056 4.640201 GCATTCCCTTTGACAGTAAGCATA 59.360 41.667 0.00 0.00 0.00 3.14
2575 3057 3.445096 GCATTCCCTTTGACAGTAAGCAT 59.555 43.478 0.00 0.00 0.00 3.79
2576 3058 2.819608 GCATTCCCTTTGACAGTAAGCA 59.180 45.455 0.00 0.00 0.00 3.91
2577 3059 3.084786 AGCATTCCCTTTGACAGTAAGC 58.915 45.455 0.00 0.00 0.00 3.09
2578 3060 5.940470 ACTTAGCATTCCCTTTGACAGTAAG 59.060 40.000 0.00 0.00 0.00 2.34
2579 3061 5.876357 ACTTAGCATTCCCTTTGACAGTAA 58.124 37.500 0.00 0.00 0.00 2.24
2580 3062 5.488341 GACTTAGCATTCCCTTTGACAGTA 58.512 41.667 0.00 0.00 0.00 2.74
2581 3063 4.327680 GACTTAGCATTCCCTTTGACAGT 58.672 43.478 0.00 0.00 0.00 3.55
2582 3064 3.372206 CGACTTAGCATTCCCTTTGACAG 59.628 47.826 0.00 0.00 0.00 3.51
2590 3072 3.496130 CACATCATCGACTTAGCATTCCC 59.504 47.826 0.00 0.00 0.00 3.97
2591 3073 4.122776 ACACATCATCGACTTAGCATTCC 58.877 43.478 0.00 0.00 0.00 3.01
2597 3079 2.099263 ACCCGACACATCATCGACTTAG 59.901 50.000 0.00 0.00 42.25 2.18
2600 3082 0.456221 GACCCGACACATCATCGACT 59.544 55.000 0.00 0.00 42.25 4.18
2617 3099 2.231235 GGTTGTGGATTTGATGTGGGAC 59.769 50.000 0.00 0.00 0.00 4.46
2650 3132 3.751175 TCTACATTGACAAAAAGGGAGCG 59.249 43.478 0.00 0.00 0.00 5.03
2681 3163 5.296780 TGTTGAAGTTGCTCTAAACTCCTTG 59.703 40.000 0.00 0.00 39.48 3.61
2682 3164 5.437060 TGTTGAAGTTGCTCTAAACTCCTT 58.563 37.500 0.00 0.00 39.48 3.36
2683 3165 5.036117 TGTTGAAGTTGCTCTAAACTCCT 57.964 39.130 0.00 0.00 39.48 3.69
2700 3206 0.865111 CATCGTGGCGACTTTGTTGA 59.135 50.000 0.00 0.00 39.18 3.18
2703 3209 1.671054 CCCATCGTGGCGACTTTGT 60.671 57.895 0.00 0.00 39.18 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.