Multiple sequence alignment - TraesCS1D01G401800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G401800 chr1D 100.000 4954 0 0 1 4954 467522766 467517813 0.000000e+00 9149.0
1 TraesCS1D01G401800 chr1A 91.943 1837 107 15 1454 3280 560467404 560469209 0.000000e+00 2534.0
2 TraesCS1D01G401800 chr1A 93.011 973 47 6 3281 4236 560469243 560470211 0.000000e+00 1400.0
3 TraesCS1D01G401800 chr1A 90.730 712 42 10 504 1207 560465766 560466461 0.000000e+00 928.0
4 TraesCS1D01G401800 chr1A 91.079 482 12 8 4233 4714 560470252 560470702 1.510000e-174 623.0
5 TraesCS1D01G401800 chr1A 89.919 248 21 4 4709 4954 560470726 560470971 2.880000e-82 316.0
6 TraesCS1D01G401800 chr1A 82.412 199 10 9 1 175 560465334 560465531 3.090000e-32 150.0
7 TraesCS1D01G401800 chr1B 87.342 1501 90 38 573 2017 645350660 645349204 0.000000e+00 1628.0
8 TraesCS1D01G401800 chr1B 88.090 1293 72 26 3281 4522 645347853 645346592 0.000000e+00 1459.0
9 TraesCS1D01G401800 chr1B 91.363 1042 65 13 2006 3046 645349186 645348169 0.000000e+00 1402.0
10 TraesCS1D01G401800 chr1B 88.559 236 19 5 3043 3276 645348116 645347887 3.780000e-71 279.0
11 TraesCS1D01G401800 chr1B 85.235 149 4 2 1 132 645356000 645355853 2.410000e-28 137.0
12 TraesCS1D01G401800 chr1B 95.000 80 3 1 362 441 645353539 645353461 1.870000e-24 124.0
13 TraesCS1D01G401800 chr1B 96.364 55 2 0 452 506 626498516 626498570 1.900000e-14 91.6
14 TraesCS1D01G401800 chr1B 96.296 54 2 0 453 506 529391880 529391933 6.830000e-14 89.8
15 TraesCS1D01G401800 chr1B 92.857 42 3 0 1271 1312 268403731 268403772 1.490000e-05 62.1
16 TraesCS1D01G401800 chr7A 92.007 613 49 0 3336 3948 251839756 251840368 0.000000e+00 861.0
17 TraesCS1D01G401800 chr7A 85.331 484 47 14 1857 2335 251838123 251838587 3.470000e-131 479.0
18 TraesCS1D01G401800 chr7A 83.151 457 55 5 2830 3265 251839191 251839646 9.990000e-107 398.0
19 TraesCS1D01G401800 chr7A 81.124 498 62 21 1857 2326 62825391 62825884 2.180000e-98 370.0
20 TraesCS1D01G401800 chr7A 87.429 175 19 2 1015 1189 251835762 251835933 1.090000e-46 198.0
21 TraesCS1D01G401800 chr7A 86.047 129 14 4 1057 1183 62824492 62824618 8.650000e-28 135.0
22 TraesCS1D01G401800 chr7A 74.205 283 55 17 1487 1760 62825047 62825320 8.770000e-18 102.0
23 TraesCS1D01G401800 chr7A 89.796 49 2 3 1267 1314 138739640 138739594 5.360000e-05 60.2
24 TraesCS1D01G401800 chr4A 85.424 837 103 7 3127 3948 674925036 674925868 0.000000e+00 852.0
25 TraesCS1D01G401800 chr4A 91.517 613 52 0 3336 3948 674909265 674909877 0.000000e+00 845.0
26 TraesCS1D01G401800 chr4A 82.087 508 63 22 1848 2333 674918603 674919104 4.620000e-110 409.0
27 TraesCS1D01G401800 chr4A 90.086 232 21 2 2809 3039 674924808 674925038 2.900000e-77 300.0
28 TraesCS1D01G401800 chr4A 92.537 201 15 0 2834 3034 674908826 674909026 6.270000e-74 289.0
29 TraesCS1D01G401800 chr4A 86.694 248 31 2 2080 2326 674908368 674908614 1.760000e-69 274.0
30 TraesCS1D01G401800 chr4A 90.385 156 14 1 1848 2002 674908105 674908260 2.340000e-48 204.0
31 TraesCS1D01G401800 chr4A 91.304 138 12 0 3129 3266 674909032 674909169 6.550000e-44 189.0
32 TraesCS1D01G401800 chr4A 87.640 89 11 0 1678 1766 674907957 674908045 2.440000e-18 104.0
33 TraesCS1D01G401800 chr4A 98.182 55 1 0 453 507 539752794 539752740 4.080000e-16 97.1
34 TraesCS1D01G401800 chr4D 91.115 619 52 3 3332 3948 499305278 499305895 0.000000e+00 835.0
35 TraesCS1D01G401800 chr4D 82.883 444 64 10 2831 3265 499304652 499305092 6.010000e-104 388.0
36 TraesCS1D01G401800 chr4D 84.737 190 17 5 1009 1189 499302540 499302726 3.940000e-41 180.0
37 TraesCS1D01G401800 chr4D 89.041 73 3 4 453 523 98858002 98857933 8.840000e-13 86.1
38 TraesCS1D01G401800 chr4D 89.583 48 4 1 1267 1314 503868580 503868626 5.360000e-05 60.2
39 TraesCS1D01G401800 chr4D 100.000 28 0 0 1271 1298 500311951 500311924 9.000000e-03 52.8
40 TraesCS1D01G401800 chr7D 91.191 613 51 1 3336 3948 236689185 236689794 0.000000e+00 830.0
41 TraesCS1D01G401800 chr7D 81.278 673 76 31 1685 2331 236687339 236687987 2.660000e-137 499.0
42 TraesCS1D01G401800 chr7D 87.097 248 30 2 2080 2326 58482339 58482585 3.780000e-71 279.0
43 TraesCS1D01G401800 chr7D 91.542 201 17 0 2834 3034 58482797 58482997 1.360000e-70 278.0
44 TraesCS1D01G401800 chr7D 95.808 167 6 1 206 371 370315083 370315249 8.170000e-68 268.0
45 TraesCS1D01G401800 chr7D 91.837 147 11 1 1857 2002 58482085 58482231 2.340000e-48 204.0
46 TraesCS1D01G401800 chr7D 90.385 104 10 0 1494 1597 236687132 236687235 2.410000e-28 137.0
47 TraesCS1D01G401800 chr7D 86.047 129 14 4 1057 1183 58480947 58481073 8.650000e-28 135.0
48 TraesCS1D01G401800 chr7D 98.182 55 1 0 453 507 452449696 452449642 4.080000e-16 97.1
49 TraesCS1D01G401800 chr7D 89.583 48 4 1 1267 1314 424268193 424268239 5.360000e-05 60.2
50 TraesCS1D01G401800 chr5A 90.660 621 55 3 3333 3952 680088261 680088879 0.000000e+00 822.0
51 TraesCS1D01G401800 chr5A 78.797 665 80 36 1867 2500 680086747 680087381 1.670000e-104 390.0
52 TraesCS1D01G401800 chr5A 83.218 435 61 11 2835 3260 680087737 680088168 6.010000e-104 388.0
53 TraesCS1D01G401800 chr5A 83.246 191 20 5 1009 1190 680085213 680085400 1.100000e-36 165.0
54 TraesCS1D01G401800 chr4B 90.307 619 57 3 3332 3948 642100987 642101604 0.000000e+00 808.0
55 TraesCS1D01G401800 chr4B 81.757 444 69 10 2831 3265 642100462 642100902 1.310000e-95 361.0
56 TraesCS1D01G401800 chr4B 83.684 190 19 5 1009 1189 642097967 642098153 8.530000e-38 169.0
57 TraesCS1D01G401800 chr7B 90.375 613 59 0 3336 3948 213417838 213418450 0.000000e+00 806.0
58 TraesCS1D01G401800 chr7B 83.603 494 53 18 1859 2331 213394359 213394845 5.890000e-119 438.0
59 TraesCS1D01G401800 chr7B 90.756 238 15 2 2809 3045 213417161 213417392 1.340000e-80 311.0
60 TraesCS1D01G401800 chr7B 96.407 167 5 1 206 371 543791733 543791899 1.760000e-69 274.0
61 TraesCS1D01G401800 chr7B 89.815 108 11 0 1490 1597 213393983 213394090 6.690000e-29 139.0
62 TraesCS1D01G401800 chr2D 95.808 167 6 1 206 371 418555501 418555667 8.170000e-68 268.0
63 TraesCS1D01G401800 chr2D 95.210 167 7 1 206 371 172790175 172790341 3.800000e-66 263.0
64 TraesCS1D01G401800 chr2D 95.210 167 7 1 206 371 353825713 353825547 3.800000e-66 263.0
65 TraesCS1D01G401800 chr2D 95.210 167 7 1 206 371 631241745 631241911 3.800000e-66 263.0
66 TraesCS1D01G401800 chr2D 94.643 168 7 2 206 371 257192491 257192658 4.920000e-65 259.0
67 TraesCS1D01G401800 chr6D 94.643 168 8 1 205 371 358889330 358889497 4.920000e-65 259.0
68 TraesCS1D01G401800 chr6D 100.000 28 0 0 1271 1298 32058900 32058927 9.000000e-03 52.8
69 TraesCS1D01G401800 chr3B 94.118 170 9 1 203 371 609639807 609639976 1.770000e-64 257.0
70 TraesCS1D01G401800 chr6B 98.113 53 1 0 453 505 617675217 617675165 5.280000e-15 93.5
71 TraesCS1D01G401800 chr6B 90.476 42 3 1 1271 1312 637872461 637872421 2.000000e-03 54.7
72 TraesCS1D01G401800 chrUn 94.737 57 3 0 453 509 334911892 334911948 6.830000e-14 89.8
73 TraesCS1D01G401800 chr3A 96.296 54 2 0 453 506 383090602 383090655 6.830000e-14 89.8
74 TraesCS1D01G401800 chr2A 96.296 54 2 0 453 506 469894995 469895048 6.830000e-14 89.8
75 TraesCS1D01G401800 chr2A 96.875 32 0 1 1267 1298 423207467 423207497 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G401800 chr1D 467517813 467522766 4953 True 9149.000000 9149 100.000000 1 4954 1 chr1D.!!$R1 4953
1 TraesCS1D01G401800 chr1A 560465334 560470971 5637 False 991.833333 2534 89.849000 1 4954 6 chr1A.!!$F1 4953
2 TraesCS1D01G401800 chr1B 645346592 645356000 9408 True 838.166667 1628 89.264833 1 4522 6 chr1B.!!$R1 4521
3 TraesCS1D01G401800 chr7A 251835762 251840368 4606 False 484.000000 861 86.979500 1015 3948 4 chr7A.!!$F2 2933
4 TraesCS1D01G401800 chr7A 62824492 62825884 1392 False 202.333333 370 80.458667 1057 2326 3 chr7A.!!$F1 1269
5 TraesCS1D01G401800 chr4A 674924808 674925868 1060 False 576.000000 852 87.755000 2809 3948 2 chr4A.!!$F3 1139
6 TraesCS1D01G401800 chr4A 674918603 674919104 501 False 409.000000 409 82.087000 1848 2333 1 chr4A.!!$F1 485
7 TraesCS1D01G401800 chr4A 674907957 674909877 1920 False 317.500000 845 90.012833 1678 3948 6 chr4A.!!$F2 2270
8 TraesCS1D01G401800 chr4D 499302540 499305895 3355 False 467.666667 835 86.245000 1009 3948 3 chr4D.!!$F2 2939
9 TraesCS1D01G401800 chr7D 236687132 236689794 2662 False 488.666667 830 87.618000 1494 3948 3 chr7D.!!$F4 2454
10 TraesCS1D01G401800 chr7D 58480947 58482997 2050 False 224.000000 279 89.130750 1057 3034 4 chr7D.!!$F3 1977
11 TraesCS1D01G401800 chr5A 680085213 680088879 3666 False 441.250000 822 83.980250 1009 3952 4 chr5A.!!$F1 2943
12 TraesCS1D01G401800 chr4B 642097967 642101604 3637 False 446.000000 808 85.249333 1009 3948 3 chr4B.!!$F1 2939
13 TraesCS1D01G401800 chr7B 213417161 213418450 1289 False 558.500000 806 90.565500 2809 3948 2 chr7B.!!$F3 1139
14 TraesCS1D01G401800 chr7B 213393983 213394845 862 False 288.500000 438 86.709000 1490 2331 2 chr7B.!!$F2 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 177 0.029834 GCAGCACTCACACCAACTTG 59.970 55.000 0.00 0.0 0.00 3.16 F
178 2363 0.036732 AGGCCGAGATTTCAAGTGCA 59.963 50.000 0.00 0.0 0.00 4.57 F
1028 5928 0.036732 ATGTTGCATGTCGTCCTGGT 59.963 50.000 0.00 0.0 0.00 4.00 F
2134 9992 0.178975 TGGCGTTCAAGAACCCCAAT 60.179 50.000 15.03 0.0 43.86 3.16 F
2708 10831 1.002773 GGTGACATGGGAAAGGTACGT 59.997 52.381 0.00 0.0 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 8383 0.472734 CCCAGAGGATCCTACAGGGG 60.473 65.0 27.16 23.47 33.66 4.79 R
2314 10181 0.101040 GGTACGTACCGCACATGCTA 59.899 55.0 28.00 0.00 39.32 3.49 R
2806 10947 0.625849 AAAGGCCAGACCATGTAGGG 59.374 55.0 5.01 0.00 43.89 3.53 R
3110 11427 0.531974 TGCACACGGAAGACAAGGAC 60.532 55.0 0.00 0.00 0.00 3.85 R
4538 13131 0.323816 ACTCCGAGATGAGTCTGGCA 60.324 55.0 1.33 0.00 41.75 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.607489 GCCCAACTGCATGTGACTCT 60.607 55.000 0.00 0.00 0.00 3.24
55 56 3.516586 TGTGACTCTTAACCTCCATCCA 58.483 45.455 0.00 0.00 0.00 3.41
129 166 2.611518 ACTAGTGAAATCGCAGCACTC 58.388 47.619 0.00 0.00 41.58 3.51
137 174 1.230635 ATCGCAGCACTCACACCAAC 61.231 55.000 0.00 0.00 0.00 3.77
138 175 1.889105 CGCAGCACTCACACCAACT 60.889 57.895 0.00 0.00 0.00 3.16
139 176 1.439353 CGCAGCACTCACACCAACTT 61.439 55.000 0.00 0.00 0.00 2.66
140 177 0.029834 GCAGCACTCACACCAACTTG 59.970 55.000 0.00 0.00 0.00 3.16
142 179 1.331756 CAGCACTCACACCAACTTGTC 59.668 52.381 0.00 0.00 0.00 3.18
145 182 2.743183 GCACTCACACCAACTTGTCTCT 60.743 50.000 0.00 0.00 0.00 3.10
146 183 2.868583 CACTCACACCAACTTGTCTCTG 59.131 50.000 0.00 0.00 0.00 3.35
147 184 2.766263 ACTCACACCAACTTGTCTCTGA 59.234 45.455 0.00 0.00 0.00 3.27
148 185 3.197766 ACTCACACCAACTTGTCTCTGAA 59.802 43.478 0.00 0.00 0.00 3.02
156 2320 5.946377 ACCAACTTGTCTCTGAAAAGAACTT 59.054 36.000 4.68 0.00 31.78 2.66
178 2363 0.036732 AGGCCGAGATTTCAAGTGCA 59.963 50.000 0.00 0.00 0.00 4.57
208 2395 6.515696 GCAAACTTTCTGGCTCTCAAAATACT 60.516 38.462 0.00 0.00 0.00 2.12
209 2396 6.809630 AACTTTCTGGCTCTCAAAATACTC 57.190 37.500 0.00 0.00 0.00 2.59
211 2398 3.914426 TCTGGCTCTCAAAATACTCCC 57.086 47.619 0.00 0.00 0.00 4.30
212 2399 3.454858 TCTGGCTCTCAAAATACTCCCT 58.545 45.455 0.00 0.00 0.00 4.20
213 2400 3.452627 TCTGGCTCTCAAAATACTCCCTC 59.547 47.826 0.00 0.00 0.00 4.30
214 2401 2.505819 TGGCTCTCAAAATACTCCCTCC 59.494 50.000 0.00 0.00 0.00 4.30
218 2405 5.257262 GCTCTCAAAATACTCCCTCCTTTT 58.743 41.667 0.00 0.00 0.00 2.27
219 2406 5.712446 GCTCTCAAAATACTCCCTCCTTTTT 59.288 40.000 0.00 0.00 0.00 1.94
220 2407 6.349694 GCTCTCAAAATACTCCCTCCTTTTTG 60.350 42.308 0.00 0.00 38.17 2.44
221 2408 6.848069 TCTCAAAATACTCCCTCCTTTTTGA 58.152 36.000 8.36 8.36 41.45 2.69
222 2409 7.470192 TCTCAAAATACTCCCTCCTTTTTGAT 58.530 34.615 8.93 0.00 42.25 2.57
225 2412 9.594936 TCAAAATACTCCCTCCTTTTTGATTTA 57.405 29.630 5.33 0.00 39.84 1.40
229 2416 9.868160 AATACTCCCTCCTTTTTGATTTATAGG 57.132 33.333 0.00 0.00 0.00 2.57
231 2418 5.454966 TCCCTCCTTTTTGATTTATAGGGC 58.545 41.667 0.00 0.00 41.88 5.19
232 2419 5.195756 TCCCTCCTTTTTGATTTATAGGGCT 59.804 40.000 0.00 0.00 41.88 5.19
233 2420 5.899547 CCCTCCTTTTTGATTTATAGGGCTT 59.100 40.000 0.00 0.00 36.30 4.35
234 2421 7.066781 CCCTCCTTTTTGATTTATAGGGCTTA 58.933 38.462 0.00 0.00 36.30 3.09
235 2422 7.730332 CCCTCCTTTTTGATTTATAGGGCTTAT 59.270 37.037 0.00 0.00 36.30 1.73
236 2423 8.797438 CCTCCTTTTTGATTTATAGGGCTTATC 58.203 37.037 0.00 0.00 0.00 1.75
237 2424 9.579932 CTCCTTTTTGATTTATAGGGCTTATCT 57.420 33.333 0.00 0.00 0.00 1.98
238 2425 9.936329 TCCTTTTTGATTTATAGGGCTTATCTT 57.064 29.630 0.00 0.00 0.00 2.40
287 2474 7.939784 AAGTCTCAATTTAATGGTTCCCTAC 57.060 36.000 0.00 0.00 0.00 3.18
297 2484 2.871096 GGTTCCCTACCACATGTTCA 57.129 50.000 0.00 0.00 46.92 3.18
298 2485 2.711542 GGTTCCCTACCACATGTTCAG 58.288 52.381 0.00 0.00 46.92 3.02
299 2486 2.304761 GGTTCCCTACCACATGTTCAGA 59.695 50.000 0.00 0.00 46.92 3.27
300 2487 3.054361 GGTTCCCTACCACATGTTCAGAT 60.054 47.826 0.00 0.00 46.92 2.90
301 2488 4.567747 GGTTCCCTACCACATGTTCAGATT 60.568 45.833 0.00 0.00 46.92 2.40
302 2489 4.927267 TCCCTACCACATGTTCAGATTT 57.073 40.909 0.00 0.00 0.00 2.17
303 2490 4.843728 TCCCTACCACATGTTCAGATTTC 58.156 43.478 0.00 0.00 0.00 2.17
304 2491 4.288366 TCCCTACCACATGTTCAGATTTCA 59.712 41.667 0.00 0.00 0.00 2.69
305 2492 5.009631 CCCTACCACATGTTCAGATTTCAA 58.990 41.667 0.00 0.00 0.00 2.69
306 2493 5.124457 CCCTACCACATGTTCAGATTTCAAG 59.876 44.000 0.00 0.00 0.00 3.02
307 2494 5.124457 CCTACCACATGTTCAGATTTCAAGG 59.876 44.000 0.00 0.00 0.00 3.61
308 2495 4.473444 ACCACATGTTCAGATTTCAAGGT 58.527 39.130 0.00 0.00 0.00 3.50
309 2496 4.279169 ACCACATGTTCAGATTTCAAGGTG 59.721 41.667 0.00 0.00 0.00 4.00
310 2497 4.232221 CACATGTTCAGATTTCAAGGTGC 58.768 43.478 0.00 0.00 0.00 5.01
311 2498 3.890756 ACATGTTCAGATTTCAAGGTGCA 59.109 39.130 0.00 0.00 0.00 4.57
312 2499 4.525487 ACATGTTCAGATTTCAAGGTGCAT 59.475 37.500 0.00 0.00 0.00 3.96
313 2500 5.011329 ACATGTTCAGATTTCAAGGTGCATT 59.989 36.000 0.00 0.00 0.00 3.56
314 2501 6.209192 ACATGTTCAGATTTCAAGGTGCATTA 59.791 34.615 0.00 0.00 0.00 1.90
315 2502 6.647334 TGTTCAGATTTCAAGGTGCATTAA 57.353 33.333 0.00 0.00 0.00 1.40
316 2503 7.048629 TGTTCAGATTTCAAGGTGCATTAAA 57.951 32.000 0.00 0.00 0.00 1.52
317 2504 7.669427 TGTTCAGATTTCAAGGTGCATTAAAT 58.331 30.769 0.00 0.00 0.00 1.40
318 2505 7.814107 TGTTCAGATTTCAAGGTGCATTAAATC 59.186 33.333 0.00 2.14 37.00 2.17
319 2506 7.465353 TCAGATTTCAAGGTGCATTAAATCA 57.535 32.000 17.06 3.49 38.45 2.57
320 2507 8.070034 TCAGATTTCAAGGTGCATTAAATCAT 57.930 30.769 17.06 6.62 38.45 2.45
321 2508 8.533657 TCAGATTTCAAGGTGCATTAAATCATT 58.466 29.630 17.06 0.00 38.45 2.57
322 2509 8.600625 CAGATTTCAAGGTGCATTAAATCATTG 58.399 33.333 17.06 7.51 38.45 2.82
323 2510 8.316214 AGATTTCAAGGTGCATTAAATCATTGT 58.684 29.630 17.06 2.80 38.45 2.71
324 2511 9.585099 GATTTCAAGGTGCATTAAATCATTGTA 57.415 29.630 13.01 0.00 36.82 2.41
326 2513 8.929827 TTCAAGGTGCATTAAATCATTGTATG 57.070 30.769 0.00 0.00 0.00 2.39
327 2514 6.979817 TCAAGGTGCATTAAATCATTGTATGC 59.020 34.615 9.14 9.14 37.91 3.14
328 2515 6.468333 AGGTGCATTAAATCATTGTATGCA 57.532 33.333 13.14 13.14 41.51 3.96
329 2516 6.876155 AGGTGCATTAAATCATTGTATGCAA 58.124 32.000 17.00 0.00 43.38 4.08
330 2517 6.982141 AGGTGCATTAAATCATTGTATGCAAG 59.018 34.615 17.00 0.00 43.38 4.01
331 2518 6.757947 GGTGCATTAAATCATTGTATGCAAGT 59.242 34.615 17.00 0.00 43.38 3.16
332 2519 7.920151 GGTGCATTAAATCATTGTATGCAAGTA 59.080 33.333 17.00 0.00 43.38 2.24
333 2520 9.467258 GTGCATTAAATCATTGTATGCAAGTAT 57.533 29.630 17.00 0.00 43.38 2.12
402 2590 4.456911 ACATGTGATGTTTGTGGATGAGAC 59.543 41.667 0.00 0.00 41.63 3.36
428 2619 9.581289 CCGAGACTATAATATCTATCCTTCCAT 57.419 37.037 0.00 0.00 0.00 3.41
450 2649 0.520404 GTGGTGCAGACTTGATGCTG 59.480 55.000 0.00 0.00 44.17 4.41
456 2655 1.901591 CAGACTTGATGCTGGTTGGT 58.098 50.000 0.00 0.00 0.00 3.67
457 2656 1.538512 CAGACTTGATGCTGGTTGGTG 59.461 52.381 0.00 0.00 0.00 4.17
458 2657 0.242017 GACTTGATGCTGGTTGGTGC 59.758 55.000 0.00 0.00 0.00 5.01
459 2658 0.178981 ACTTGATGCTGGTTGGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
461 2660 1.741706 CTTGATGCTGGTTGGTGCTAG 59.258 52.381 0.00 0.00 0.00 3.42
462 2661 0.983467 TGATGCTGGTTGGTGCTAGA 59.017 50.000 0.00 0.00 0.00 2.43
463 2662 1.561076 TGATGCTGGTTGGTGCTAGAT 59.439 47.619 0.00 0.00 0.00 1.98
464 2663 2.771372 TGATGCTGGTTGGTGCTAGATA 59.229 45.455 0.00 0.00 0.00 1.98
465 2664 2.691409 TGCTGGTTGGTGCTAGATAC 57.309 50.000 0.00 0.00 0.00 2.24
467 2666 2.505407 TGCTGGTTGGTGCTAGATACAT 59.495 45.455 0.00 0.00 0.00 2.29
468 2667 3.134458 GCTGGTTGGTGCTAGATACATC 58.866 50.000 0.00 0.00 0.00 3.06
469 2668 3.733337 CTGGTTGGTGCTAGATACATCC 58.267 50.000 0.00 0.00 0.00 3.51
472 3608 4.165950 TGGTTGGTGCTAGATACATCCATT 59.834 41.667 0.00 0.00 30.16 3.16
479 3615 3.764434 GCTAGATACATCCATTCGAGGGA 59.236 47.826 9.96 9.96 39.14 4.20
484 3620 1.303309 CATCCATTCGAGGGACAAGC 58.697 55.000 9.77 0.00 37.23 4.01
488 3624 2.162681 CCATTCGAGGGACAAGCTTTT 58.837 47.619 0.00 0.00 0.00 2.27
489 3625 2.558359 CCATTCGAGGGACAAGCTTTTT 59.442 45.455 0.00 0.00 0.00 1.94
491 3627 1.508632 TCGAGGGACAAGCTTTTTCG 58.491 50.000 0.00 0.00 0.00 3.46
492 3628 0.517316 CGAGGGACAAGCTTTTTCGG 59.483 55.000 0.00 0.00 0.00 4.30
493 3629 1.876416 CGAGGGACAAGCTTTTTCGGA 60.876 52.381 0.00 0.00 0.00 4.55
494 3630 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
495 3631 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
497 3633 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
498 3634 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
499 3635 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
500 3636 0.395312 AAGCTTTTTCGGACGGAGGA 59.605 50.000 0.00 0.00 0.00 3.71
502 3638 0.796927 GCTTTTTCGGACGGAGGAAG 59.203 55.000 0.00 0.00 0.00 3.46
527 5404 7.863375 AGTACTAGCTCTTACTAAAATCGCATG 59.137 37.037 5.54 0.00 0.00 4.06
529 5406 7.265673 ACTAGCTCTTACTAAAATCGCATGAA 58.734 34.615 0.00 0.00 0.00 2.57
539 5416 8.382030 ACTAAAATCGCATGAATCACATCATA 57.618 30.769 0.00 0.00 37.96 2.15
556 5433 5.351465 ACATCATAAATAACGGATCGATGCC 59.649 40.000 11.64 7.49 33.87 4.40
655 5538 9.178758 GTCTGATCCAATCCAAGTTACTAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
688 5571 6.204882 TCGGACATATATAGAGAGTGTGTGTG 59.795 42.308 0.00 0.00 0.00 3.82
692 5575 9.274206 GACATATATAGAGAGTGTGTGTGAGTA 57.726 37.037 0.00 0.00 0.00 2.59
693 5576 9.278978 ACATATATAGAGAGTGTGTGTGAGTAG 57.721 37.037 0.00 0.00 0.00 2.57
694 5577 9.278978 CATATATAGAGAGTGTGTGTGAGTAGT 57.721 37.037 0.00 0.00 0.00 2.73
707 5590 4.697828 GTGTGAGTAGTCATCAGAGAGTGA 59.302 45.833 2.99 0.00 40.38 3.41
766 5650 1.532868 GCACATGCCGAGATCCATAAC 59.467 52.381 0.00 0.00 34.31 1.89
778 5662 2.779755 TCCATAACAACGTGCTCCAT 57.220 45.000 0.00 0.00 0.00 3.41
803 5687 1.022735 ACGATGCTACCGATCGAGTT 58.977 50.000 18.66 2.68 44.46 3.01
829 5719 9.284594 TGTATACGTACGTAGTTACCAATTTTC 57.715 33.333 29.65 10.24 37.78 2.29
895 5788 1.255667 ACTACATATAGGCCGGCCGG 61.256 60.000 40.26 40.26 41.95 6.13
929 5828 2.985456 GGACTCTCACCAGCCTGG 59.015 66.667 9.83 9.83 45.02 4.45
980 5879 0.680061 GCCTACAAGATACGGGAGGG 59.320 60.000 0.00 0.00 0.00 4.30
981 5880 1.339097 CCTACAAGATACGGGAGGGG 58.661 60.000 0.00 0.00 0.00 4.79
982 5881 1.339097 CTACAAGATACGGGAGGGGG 58.661 60.000 0.00 0.00 0.00 5.40
983 5882 0.761702 TACAAGATACGGGAGGGGGC 60.762 60.000 0.00 0.00 0.00 5.80
984 5883 1.766461 CAAGATACGGGAGGGGGCT 60.766 63.158 0.00 0.00 0.00 5.19
985 5884 1.766461 AAGATACGGGAGGGGGCTG 60.766 63.158 0.00 0.00 0.00 4.85
997 5896 2.110213 GGGCTGTGACGGTGTTGA 59.890 61.111 0.00 0.00 0.00 3.18
1007 5907 1.074072 CGGTGTTGACCATGGGGAA 59.926 57.895 18.09 5.05 43.33 3.97
1012 5912 1.710244 TGTTGACCATGGGGAAGATGT 59.290 47.619 18.09 0.00 38.05 3.06
1013 5913 2.109834 TGTTGACCATGGGGAAGATGTT 59.890 45.455 18.09 0.00 38.05 2.71
1028 5928 0.036732 ATGTTGCATGTCGTCCTGGT 59.963 50.000 0.00 0.00 0.00 4.00
1031 5931 2.050836 TTGCATGTCGTCCTGGTGGT 62.051 55.000 0.00 0.00 34.23 4.16
1192 6120 1.515954 CTCGGCGACCAGGTACATT 59.484 57.895 4.99 0.00 0.00 2.71
1193 6121 0.806102 CTCGGCGACCAGGTACATTG 60.806 60.000 4.99 0.00 0.00 2.82
1237 6480 6.611642 TCACTAATACTCCCTTGCTAGTTCAT 59.388 38.462 0.00 0.00 0.00 2.57
1264 6507 3.618690 AGACAAATAGCCAGGAGACAC 57.381 47.619 0.00 0.00 0.00 3.67
1278 6527 2.964209 GAGACACCATATCTCCCTCCA 58.036 52.381 0.00 0.00 37.26 3.86
1284 6533 3.590630 CACCATATCTCCCTCCAATCCAT 59.409 47.826 0.00 0.00 0.00 3.41
1302 6551 8.849168 CCAATCCATATTAATTGTTGCTCACTA 58.151 33.333 0.00 0.00 32.20 2.74
1306 6555 8.710239 TCCATATTAATTGTTGCTCACTAGGTA 58.290 33.333 0.00 0.00 0.00 3.08
1336 6586 7.830940 TTAGAGTACAAAGTGAACGAACAAA 57.169 32.000 0.00 0.00 0.00 2.83
1367 6887 5.640357 TCGTGAACTTTTGAGTGTACAAAGT 59.360 36.000 0.00 0.00 40.15 2.66
1378 6898 8.450578 TTGAGTGTACAAAGTTGATGAGAAAT 57.549 30.769 0.00 0.00 0.00 2.17
1380 6900 8.988934 TGAGTGTACAAAGTTGATGAGAAATAC 58.011 33.333 0.00 0.00 0.00 1.89
1384 6904 7.661437 TGTACAAAGTTGATGAGAAATACAGCT 59.339 33.333 0.00 0.00 0.00 4.24
1401 8066 3.244665 ACAGCTGGACTCATTTGTGATGA 60.245 43.478 19.93 0.00 0.00 2.92
1600 8312 4.582656 CCCCTGCCGATTTCATGTAAAATA 59.417 41.667 0.00 0.00 0.00 1.40
1601 8313 5.507315 CCCCTGCCGATTTCATGTAAAATAC 60.507 44.000 0.00 0.00 0.00 1.89
1602 8314 5.204833 CCTGCCGATTTCATGTAAAATACG 58.795 41.667 0.00 0.00 0.00 3.06
1624 8383 4.201920 CGCCTTTTCCCTTAGCATTCTAAC 60.202 45.833 0.00 0.00 31.85 2.34
1644 8403 0.472734 CCCTGTAGGATCCTCTGGGG 60.473 65.000 29.27 26.51 38.24 4.96
1648 8411 0.689623 GTAGGATCCTCTGGGGCATG 59.310 60.000 20.22 0.00 34.39 4.06
1649 8412 0.474466 TAGGATCCTCTGGGGCATGG 60.474 60.000 20.22 0.00 34.39 3.66
1655 8418 1.358830 CCTCTGGGGCATGGAGGAAT 61.359 60.000 8.80 0.00 46.82 3.01
1657 8420 1.072965 CTCTGGGGCATGGAGGAATAC 59.927 57.143 0.00 0.00 0.00 1.89
1774 8554 5.471556 TCAAGGTCGGTTGACTAATTACA 57.528 39.130 0.00 0.00 44.83 2.41
1775 8555 6.045072 TCAAGGTCGGTTGACTAATTACAT 57.955 37.500 0.00 0.00 44.83 2.29
1873 9596 1.078072 GTGTGTGTGTGGGTGTGGA 60.078 57.895 0.00 0.00 0.00 4.02
2074 9930 5.874810 TGATCTTGGCTATGTGTTTGACTAC 59.125 40.000 0.00 0.00 0.00 2.73
2134 9992 0.178975 TGGCGTTCAAGAACCCCAAT 60.179 50.000 15.03 0.00 43.86 3.16
2207 10065 1.676635 ACGTGGACTAGCGGCTACA 60.677 57.895 5.42 0.00 0.00 2.74
2314 10181 2.030562 CTGACCTTCAACCGCGGT 59.969 61.111 28.70 28.70 0.00 5.68
2532 10638 6.492087 CCTTGGAAAAATGTAGTAGTTCCCAA 59.508 38.462 0.00 0.00 37.53 4.12
2533 10639 7.014808 CCTTGGAAAAATGTAGTAGTTCCCAAA 59.985 37.037 0.00 0.00 37.53 3.28
2534 10640 7.899648 TGGAAAAATGTAGTAGTTCCCAAAA 57.100 32.000 0.00 0.00 37.53 2.44
2535 10641 8.307582 TGGAAAAATGTAGTAGTTCCCAAAAA 57.692 30.769 0.00 0.00 37.53 1.94
2540 10646 8.664669 AAATGTAGTAGTTCCCAAAAATGGAT 57.335 30.769 0.00 0.00 0.00 3.41
2541 10647 7.881775 ATGTAGTAGTTCCCAAAAATGGATC 57.118 36.000 0.00 0.00 0.00 3.36
2563 10683 1.939934 CTCAAGACCAGTTCGTTTGCA 59.060 47.619 0.00 0.00 0.00 4.08
2584 10707 4.142816 GCAATGCAGGTACACTTACAAGAG 60.143 45.833 0.00 0.00 0.00 2.85
2687 10810 1.926510 CTGCAACGCATCATCGTCTTA 59.073 47.619 0.00 0.00 42.46 2.10
2707 10830 1.278127 AGGTGACATGGGAAAGGTACG 59.722 52.381 0.00 0.00 0.00 3.67
2708 10831 1.002773 GGTGACATGGGAAAGGTACGT 59.997 52.381 0.00 0.00 0.00 3.57
2709 10832 2.234414 GGTGACATGGGAAAGGTACGTA 59.766 50.000 0.00 0.00 0.00 3.57
2710 10833 3.518590 GTGACATGGGAAAGGTACGTAG 58.481 50.000 0.00 0.00 0.00 3.51
2743 10884 1.081094 GCATGCAAGCCAATTTCACC 58.919 50.000 14.21 0.00 0.00 4.02
2793 10934 9.311916 CTACACTCAAATGTTGAAAAATGGAAA 57.688 29.630 0.00 0.00 39.58 3.13
2796 10937 6.257630 ACTCAAATGTTGAAAAATGGAAACCG 59.742 34.615 0.00 0.00 39.58 4.44
2806 10947 7.199766 TGAAAAATGGAAACCGACATATATGC 58.800 34.615 12.79 5.03 0.00 3.14
3069 11267 6.183360 ACGTTATAGATACATAGATCACGCCC 60.183 42.308 0.00 0.00 29.37 6.13
3070 11268 6.505272 GTTATAGATACATAGATCACGCCCC 58.495 44.000 0.00 0.00 0.00 5.80
3074 11272 1.006102 CATAGATCACGCCCCGACC 60.006 63.158 0.00 0.00 0.00 4.79
3110 11427 5.156355 GGAGCAGTGTCATGTAAAAATGTG 58.844 41.667 0.00 0.00 0.00 3.21
3316 11692 5.763876 ATACTCCTATGAACCTATTGGGC 57.236 43.478 0.00 0.00 39.10 5.36
3326 11828 2.750814 ACCTATTGGGCTTGAAATGGG 58.249 47.619 0.00 0.00 39.58 4.00
3863 12378 3.016474 GAAGAGCAGCGACGGCAAC 62.016 63.158 0.00 0.00 43.41 4.17
3992 12507 3.474806 CAACGTTGCTAGCCGGAG 58.525 61.111 16.51 3.65 0.00 4.63
3995 12510 1.533469 AACGTTGCTAGCCGGAGAGT 61.533 55.000 13.29 0.94 0.00 3.24
4027 12542 3.879892 GGTTGGTCCTCATGAGCTTAATC 59.120 47.826 17.76 6.05 42.12 1.75
4053 12568 0.890683 ATAAAACTGGCCAGCTGCAC 59.109 50.000 33.06 3.31 43.89 4.57
4054 12569 1.178534 TAAAACTGGCCAGCTGCACC 61.179 55.000 33.06 12.69 43.89 5.01
4058 12573 1.378911 CTGGCCAGCTGCACCATTA 60.379 57.895 22.33 5.10 43.89 1.90
4059 12574 0.966875 CTGGCCAGCTGCACCATTAA 60.967 55.000 22.33 4.79 43.89 1.40
4149 12664 7.757941 TCCATTGATGATTGCCGATTTATAA 57.242 32.000 0.00 0.00 0.00 0.98
4201 12732 7.800155 AAAACCCAGTGGAACAAATTAAATG 57.200 32.000 11.95 0.00 44.16 2.32
4202 12733 6.493189 AACCCAGTGGAACAAATTAAATGT 57.507 33.333 11.95 0.00 44.16 2.71
4203 12734 5.852827 ACCCAGTGGAACAAATTAAATGTG 58.147 37.500 11.95 0.00 44.16 3.21
4204 12735 5.600484 ACCCAGTGGAACAAATTAAATGTGA 59.400 36.000 11.95 0.00 44.16 3.58
4205 12736 6.158598 CCCAGTGGAACAAATTAAATGTGAG 58.841 40.000 11.95 0.00 44.16 3.51
4206 12737 5.634859 CCAGTGGAACAAATTAAATGTGAGC 59.365 40.000 1.68 0.00 44.16 4.26
4209 12740 6.265196 AGTGGAACAAATTAAATGTGAGCAGA 59.735 34.615 0.00 0.00 44.16 4.26
4212 12743 7.147976 GGAACAAATTAAATGTGAGCAGAAGT 58.852 34.615 0.00 0.00 0.00 3.01
4306 12898 5.506832 CACGTAAGATTTATCGTTTTGCCAC 59.493 40.000 0.00 0.00 43.62 5.01
4325 12917 1.335872 ACTTCGCCGCCTTTTGATTTG 60.336 47.619 0.00 0.00 0.00 2.32
4362 12954 1.216178 GTGTGTTGGATGCCATGCC 59.784 57.895 0.00 0.00 31.53 4.40
4411 13004 7.620880 AGAAGAATAGTACCACATGCTTTACA 58.379 34.615 0.00 0.00 0.00 2.41
4412 13005 8.267894 AGAAGAATAGTACCACATGCTTTACAT 58.732 33.333 0.00 0.00 40.66 2.29
4413 13006 9.542462 GAAGAATAGTACCACATGCTTTACATA 57.458 33.333 0.00 0.00 36.64 2.29
4523 13116 2.444895 AGATGGCCGGACTCTCCC 60.445 66.667 9.82 0.00 31.13 4.30
4527 13120 4.467107 GGCCGGACTCTCCCCTCT 62.467 72.222 5.05 0.00 31.13 3.69
4528 13121 2.835895 GCCGGACTCTCCCCTCTC 60.836 72.222 5.05 0.00 31.13 3.20
4529 13122 3.011885 CCGGACTCTCCCCTCTCT 58.988 66.667 0.00 0.00 31.13 3.10
4530 13123 1.152839 CCGGACTCTCCCCTCTCTC 60.153 68.421 0.00 0.00 31.13 3.20
4531 13124 1.641552 CCGGACTCTCCCCTCTCTCT 61.642 65.000 0.00 0.00 31.13 3.10
4532 13125 0.257616 CGGACTCTCCCCTCTCTCTT 59.742 60.000 0.00 0.00 31.13 2.85
4533 13126 1.341581 CGGACTCTCCCCTCTCTCTTT 60.342 57.143 0.00 0.00 31.13 2.52
4534 13127 2.827755 GGACTCTCCCCTCTCTCTTTT 58.172 52.381 0.00 0.00 0.00 2.27
4535 13128 3.178046 GGACTCTCCCCTCTCTCTTTTT 58.822 50.000 0.00 0.00 0.00 1.94
4554 13147 2.099141 TTTTGCCAGACTCATCTCGG 57.901 50.000 0.00 0.00 30.42 4.63
4555 13148 1.266178 TTTGCCAGACTCATCTCGGA 58.734 50.000 0.00 0.00 30.42 4.55
4556 13149 0.820226 TTGCCAGACTCATCTCGGAG 59.180 55.000 0.00 0.00 40.79 4.63
4586 13179 4.641645 TGTTGCTGCGGGTCAGGG 62.642 66.667 0.00 0.00 43.06 4.45
4659 13252 2.093216 GCACCCTTGCGAGAGAATG 58.907 57.895 1.22 0.00 39.50 2.67
4706 13299 4.261801 TGCTAGCCACTAGATTTGAAACC 58.738 43.478 13.29 0.00 36.26 3.27
4714 13307 6.642540 GCCACTAGATTTGAAACCTTTTTGAG 59.357 38.462 0.00 0.00 0.00 3.02
4716 13309 8.413229 CCACTAGATTTGAAACCTTTTTGAGAA 58.587 33.333 0.00 0.00 0.00 2.87
4717 13310 9.971922 CACTAGATTTGAAACCTTTTTGAGAAT 57.028 29.630 0.00 0.00 0.00 2.40
4718 13311 9.971922 ACTAGATTTGAAACCTTTTTGAGAATG 57.028 29.630 0.00 0.00 0.00 2.67
4720 13313 7.503549 AGATTTGAAACCTTTTTGAGAATGCT 58.496 30.769 0.00 0.00 0.00 3.79
4721 13314 6.907206 TTTGAAACCTTTTTGAGAATGCTG 57.093 33.333 0.00 0.00 0.00 4.41
4724 13317 5.305128 TGAAACCTTTTTGAGAATGCTGGAT 59.695 36.000 0.00 0.00 0.00 3.41
4770 13392 7.480810 ACTTGTGAAGTTCCAAAACATCTAAC 58.519 34.615 0.00 0.00 39.04 2.34
4831 13454 8.359060 TGAAATTTCAAACACTTTTTATCCCG 57.641 30.769 18.45 0.00 33.55 5.14
4840 13463 6.642707 ACACTTTTTATCCCGAACAATTCA 57.357 33.333 0.00 0.00 0.00 2.57
4847 13470 8.541133 TTTTATCCCGAACAATTCAAAATTCC 57.459 30.769 0.00 0.00 0.00 3.01
4901 13524 6.380095 AATGCAAGCACATTTTGAAAACAT 57.620 29.167 0.00 0.00 36.91 2.71
4905 13528 5.678047 GCAAGCACATTTTGAAAACATGAAC 59.322 36.000 0.00 0.00 0.00 3.18
4907 13530 6.348621 AGCACATTTTGAAAACATGAACAC 57.651 33.333 0.00 0.00 0.00 3.32
4910 13533 7.119553 AGCACATTTTGAAAACATGAACACTTT 59.880 29.630 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.591527 ACAAGTGGATGGATGGAGGTTAA 59.408 43.478 0.00 0.00 0.00 2.01
55 56 5.654603 TTACGTCTACATCACAAGTGGAT 57.345 39.130 0.00 0.00 0.00 3.41
129 166 4.635765 TCTTTTCAGAGACAAGTTGGTGTG 59.364 41.667 7.96 3.24 0.00 3.82
137 174 5.238214 CCTCCAAGTTCTTTTCAGAGACAAG 59.762 44.000 0.00 0.00 0.00 3.16
138 175 5.126067 CCTCCAAGTTCTTTTCAGAGACAA 58.874 41.667 0.00 0.00 0.00 3.18
139 176 4.708177 CCTCCAAGTTCTTTTCAGAGACA 58.292 43.478 0.00 0.00 0.00 3.41
140 177 3.500299 GCCTCCAAGTTCTTTTCAGAGAC 59.500 47.826 0.00 0.00 0.00 3.36
142 179 2.816672 GGCCTCCAAGTTCTTTTCAGAG 59.183 50.000 0.00 0.00 0.00 3.35
145 182 1.142060 TCGGCCTCCAAGTTCTTTTCA 59.858 47.619 0.00 0.00 0.00 2.69
146 183 1.807142 CTCGGCCTCCAAGTTCTTTTC 59.193 52.381 0.00 0.00 0.00 2.29
147 184 1.420138 TCTCGGCCTCCAAGTTCTTTT 59.580 47.619 0.00 0.00 0.00 2.27
148 185 1.056660 TCTCGGCCTCCAAGTTCTTT 58.943 50.000 0.00 0.00 0.00 2.52
156 2320 0.984230 ACTTGAAATCTCGGCCTCCA 59.016 50.000 0.00 0.00 0.00 3.86
194 2381 2.774809 AGGAGGGAGTATTTTGAGAGCC 59.225 50.000 0.00 0.00 0.00 4.70
208 2395 5.195756 AGCCCTATAAATCAAAAAGGAGGGA 59.804 40.000 7.83 0.00 44.48 4.20
209 2396 5.458595 AGCCCTATAAATCAAAAAGGAGGG 58.541 41.667 0.00 0.00 44.52 4.30
211 2398 9.579932 AGATAAGCCCTATAAATCAAAAAGGAG 57.420 33.333 0.00 0.00 0.00 3.69
212 2399 9.936329 AAGATAAGCCCTATAAATCAAAAAGGA 57.064 29.630 0.00 0.00 0.00 3.36
279 2466 3.695830 TCTGAACATGTGGTAGGGAAC 57.304 47.619 0.00 0.00 0.00 3.62
280 2467 4.927267 AATCTGAACATGTGGTAGGGAA 57.073 40.909 0.00 0.00 0.00 3.97
281 2468 4.288366 TGAAATCTGAACATGTGGTAGGGA 59.712 41.667 0.00 0.00 0.00 4.20
282 2469 4.588899 TGAAATCTGAACATGTGGTAGGG 58.411 43.478 0.00 0.00 0.00 3.53
284 2471 5.707298 ACCTTGAAATCTGAACATGTGGTAG 59.293 40.000 0.00 0.00 0.00 3.18
285 2472 5.473162 CACCTTGAAATCTGAACATGTGGTA 59.527 40.000 0.00 0.00 0.00 3.25
286 2473 4.279169 CACCTTGAAATCTGAACATGTGGT 59.721 41.667 0.00 0.00 0.00 4.16
287 2474 4.801891 CACCTTGAAATCTGAACATGTGG 58.198 43.478 0.00 0.00 0.00 4.17
288 2475 4.232221 GCACCTTGAAATCTGAACATGTG 58.768 43.478 0.00 0.00 0.00 3.21
289 2476 3.890756 TGCACCTTGAAATCTGAACATGT 59.109 39.130 0.00 0.00 0.00 3.21
290 2477 4.508461 TGCACCTTGAAATCTGAACATG 57.492 40.909 0.00 0.00 0.00 3.21
293 2480 7.814107 TGATTTAATGCACCTTGAAATCTGAAC 59.186 33.333 15.69 0.00 37.39 3.18
294 2481 7.894708 TGATTTAATGCACCTTGAAATCTGAA 58.105 30.769 15.69 1.53 37.39 3.02
295 2482 7.465353 TGATTTAATGCACCTTGAAATCTGA 57.535 32.000 15.69 0.00 37.39 3.27
296 2483 8.600625 CAATGATTTAATGCACCTTGAAATCTG 58.399 33.333 15.69 7.90 37.39 2.90
297 2484 8.316214 ACAATGATTTAATGCACCTTGAAATCT 58.684 29.630 15.69 5.35 37.39 2.40
298 2485 8.483307 ACAATGATTTAATGCACCTTGAAATC 57.517 30.769 0.00 1.22 37.14 2.17
300 2487 9.368674 CATACAATGATTTAATGCACCTTGAAA 57.631 29.630 0.00 0.00 0.00 2.69
301 2488 7.492020 GCATACAATGATTTAATGCACCTTGAA 59.508 33.333 13.66 0.00 41.94 2.69
302 2489 6.979817 GCATACAATGATTTAATGCACCTTGA 59.020 34.615 13.66 0.00 41.94 3.02
303 2490 6.757478 TGCATACAATGATTTAATGCACCTTG 59.243 34.615 16.11 0.00 45.76 3.61
304 2491 6.876155 TGCATACAATGATTTAATGCACCTT 58.124 32.000 16.11 0.00 45.76 3.50
305 2492 6.468333 TGCATACAATGATTTAATGCACCT 57.532 33.333 16.11 0.00 45.76 4.00
332 2519 9.603921 CCATGCATTGGTTAATTTTCTCTTAAT 57.396 29.630 0.00 0.00 40.99 1.40
333 2520 8.811017 TCCATGCATTGGTTAATTTTCTCTTAA 58.189 29.630 0.00 0.00 46.52 1.85
334 2521 8.250332 GTCCATGCATTGGTTAATTTTCTCTTA 58.750 33.333 0.00 0.00 46.52 2.10
335 2522 7.038799 AGTCCATGCATTGGTTAATTTTCTCTT 60.039 33.333 0.00 0.00 46.52 2.85
336 2523 6.438425 AGTCCATGCATTGGTTAATTTTCTCT 59.562 34.615 0.00 0.00 46.52 3.10
337 2524 6.633856 AGTCCATGCATTGGTTAATTTTCTC 58.366 36.000 0.00 0.00 46.52 2.87
338 2525 6.610075 AGTCCATGCATTGGTTAATTTTCT 57.390 33.333 0.00 0.00 46.52 2.52
339 2526 6.873076 TGAAGTCCATGCATTGGTTAATTTTC 59.127 34.615 0.00 3.76 46.52 2.29
340 2527 6.767456 TGAAGTCCATGCATTGGTTAATTTT 58.233 32.000 0.00 0.00 46.52 1.82
341 2528 6.357579 TGAAGTCCATGCATTGGTTAATTT 57.642 33.333 0.00 0.00 46.52 1.82
342 2529 5.999205 TGAAGTCCATGCATTGGTTAATT 57.001 34.783 0.00 0.00 46.52 1.40
343 2530 5.716228 TCTTGAAGTCCATGCATTGGTTAAT 59.284 36.000 0.00 0.00 46.52 1.40
344 2531 5.076182 TCTTGAAGTCCATGCATTGGTTAA 58.924 37.500 0.00 0.00 46.52 2.01
345 2532 4.661222 TCTTGAAGTCCATGCATTGGTTA 58.339 39.130 0.00 0.00 46.52 2.85
346 2533 3.499338 TCTTGAAGTCCATGCATTGGTT 58.501 40.909 0.00 0.00 46.52 3.67
347 2534 3.159213 TCTTGAAGTCCATGCATTGGT 57.841 42.857 0.00 0.00 46.52 3.67
349 2536 3.130516 AGCATCTTGAAGTCCATGCATTG 59.869 43.478 16.45 0.00 43.48 2.82
350 2537 3.362706 AGCATCTTGAAGTCCATGCATT 58.637 40.909 16.45 0.00 43.48 3.56
351 2538 3.014304 AGCATCTTGAAGTCCATGCAT 57.986 42.857 16.45 0.00 43.48 3.96
352 2539 2.502142 AGCATCTTGAAGTCCATGCA 57.498 45.000 16.45 0.00 43.48 3.96
353 2540 4.194640 TCTAAGCATCTTGAAGTCCATGC 58.805 43.478 8.74 8.74 41.72 4.06
354 2541 5.426504 ACTCTAAGCATCTTGAAGTCCATG 58.573 41.667 0.00 0.00 0.00 3.66
355 2542 5.188555 TGACTCTAAGCATCTTGAAGTCCAT 59.811 40.000 14.73 0.00 0.00 3.41
356 2543 4.528206 TGACTCTAAGCATCTTGAAGTCCA 59.472 41.667 14.73 6.24 0.00 4.02
357 2544 4.867608 GTGACTCTAAGCATCTTGAAGTCC 59.132 45.833 14.73 7.56 0.00 3.85
358 2545 5.473931 TGTGACTCTAAGCATCTTGAAGTC 58.526 41.667 12.35 12.35 0.00 3.01
359 2546 5.474578 TGTGACTCTAAGCATCTTGAAGT 57.525 39.130 0.00 0.00 0.00 3.01
360 2547 5.873712 ACATGTGACTCTAAGCATCTTGAAG 59.126 40.000 0.00 0.00 0.00 3.02
402 2590 8.982091 TGGAAGGATAGATATTATAGTCTCGG 57.018 38.462 0.00 0.00 0.00 4.63
428 2619 1.337703 GCATCAAGTCTGCACCACAAA 59.662 47.619 0.00 0.00 39.46 2.83
450 2649 3.838244 TGGATGTATCTAGCACCAACC 57.162 47.619 0.00 0.00 0.00 3.77
456 2655 3.511540 CCCTCGAATGGATGTATCTAGCA 59.488 47.826 0.00 0.00 0.00 3.49
457 2656 3.764434 TCCCTCGAATGGATGTATCTAGC 59.236 47.826 0.00 0.00 0.00 3.42
458 2657 4.767409 TGTCCCTCGAATGGATGTATCTAG 59.233 45.833 6.62 0.00 33.65 2.43
459 2658 4.736473 TGTCCCTCGAATGGATGTATCTA 58.264 43.478 6.62 0.00 33.65 1.98
461 2660 4.310769 CTTGTCCCTCGAATGGATGTATC 58.689 47.826 6.62 0.00 33.65 2.24
462 2661 3.495100 GCTTGTCCCTCGAATGGATGTAT 60.495 47.826 6.62 0.00 33.65 2.29
463 2662 2.158957 GCTTGTCCCTCGAATGGATGTA 60.159 50.000 6.62 0.00 33.65 2.29
464 2663 1.407437 GCTTGTCCCTCGAATGGATGT 60.407 52.381 6.62 0.00 33.65 3.06
465 2664 1.134280 AGCTTGTCCCTCGAATGGATG 60.134 52.381 6.62 2.88 33.65 3.51
467 2666 0.984230 AAGCTTGTCCCTCGAATGGA 59.016 50.000 0.00 0.00 0.00 3.41
468 2667 1.826385 AAAGCTTGTCCCTCGAATGG 58.174 50.000 0.00 0.00 0.00 3.16
469 2668 3.667960 CGAAAAAGCTTGTCCCTCGAATG 60.668 47.826 0.00 0.00 0.00 2.67
472 3608 1.508632 CGAAAAAGCTTGTCCCTCGA 58.491 50.000 0.00 0.00 0.00 4.04
479 3615 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
484 3620 2.165319 ACTTCCTCCGTCCGAAAAAG 57.835 50.000 0.00 0.00 0.00 2.27
488 3624 2.636830 CTAGTACTTCCTCCGTCCGAA 58.363 52.381 0.00 0.00 0.00 4.30
489 3625 1.745141 GCTAGTACTTCCTCCGTCCGA 60.745 57.143 0.00 0.00 0.00 4.55
491 3627 1.948834 GAGCTAGTACTTCCTCCGTCC 59.051 57.143 0.00 0.00 0.00 4.79
492 3628 2.921821 AGAGCTAGTACTTCCTCCGTC 58.078 52.381 0.00 0.00 0.00 4.79
493 3629 3.369242 AAGAGCTAGTACTTCCTCCGT 57.631 47.619 0.00 0.00 0.00 4.69
494 3630 4.453751 AGTAAGAGCTAGTACTTCCTCCG 58.546 47.826 0.00 0.00 0.00 4.63
495 3631 7.878547 TTTAGTAAGAGCTAGTACTTCCTCC 57.121 40.000 12.68 0.00 32.79 4.30
497 3633 8.623030 CGATTTTAGTAAGAGCTAGTACTTCCT 58.377 37.037 12.68 0.00 32.79 3.36
498 3634 7.379262 GCGATTTTAGTAAGAGCTAGTACTTCC 59.621 40.741 12.68 0.00 32.79 3.46
499 3635 7.914346 TGCGATTTTAGTAAGAGCTAGTACTTC 59.086 37.037 12.68 0.00 32.79 3.01
500 3636 7.769220 TGCGATTTTAGTAAGAGCTAGTACTT 58.231 34.615 12.68 2.80 32.79 2.24
502 3638 7.861372 TCATGCGATTTTAGTAAGAGCTAGTAC 59.139 37.037 0.00 0.00 0.00 2.73
527 5404 8.239681 TCGATCCGTTATTTATGATGTGATTC 57.760 34.615 0.00 0.00 0.00 2.52
529 5406 7.201556 GCATCGATCCGTTATTTATGATGTGAT 60.202 37.037 0.00 0.00 35.57 3.06
539 5416 1.069513 TCCGGCATCGATCCGTTATTT 59.930 47.619 24.71 0.00 45.09 1.40
543 5420 0.243907 CTATCCGGCATCGATCCGTT 59.756 55.000 24.71 17.64 45.09 4.44
556 5433 1.336332 CGACCATGAGAAGCCTATCCG 60.336 57.143 0.00 0.00 0.00 4.18
567 5444 3.316821 CGCAGCATCGACCATGAG 58.683 61.111 0.00 0.00 33.80 2.90
603 5480 3.151710 AATCGCGACCGGGGATCA 61.152 61.111 12.93 0.00 46.57 2.92
693 5576 4.217334 TCAGTCAAGTCACTCTCTGATGAC 59.783 45.833 2.42 2.42 44.64 3.06
694 5577 4.401925 TCAGTCAAGTCACTCTCTGATGA 58.598 43.478 3.40 0.00 0.00 2.92
707 5590 6.388278 GGTACTCTTCGTTTATCAGTCAAGT 58.612 40.000 0.00 0.00 0.00 3.16
766 5650 1.201954 CGTGATTCATGGAGCACGTTG 60.202 52.381 31.60 8.83 46.28 4.10
778 5662 2.604614 CGATCGGTAGCATCGTGATTCA 60.605 50.000 7.38 0.00 38.67 2.57
788 5672 3.059393 CGTATACAACTCGATCGGTAGCA 60.059 47.826 16.41 0.00 0.00 3.49
803 5687 9.284594 GAAAATTGGTAACTACGTACGTATACA 57.715 33.333 27.58 19.72 37.61 2.29
829 5719 0.802494 GTGAACCACGGGCTATGTTG 59.198 55.000 0.00 0.00 0.00 3.33
871 5761 2.415090 GCCGGCCTATATGTAGTACGTG 60.415 54.545 18.11 0.00 0.00 4.49
911 5804 2.575993 CAGGCTGGTGAGAGTCCG 59.424 66.667 6.61 0.00 0.00 4.79
929 5828 2.124778 GCTCCTGCTCCTTGGCTC 60.125 66.667 0.00 0.00 36.03 4.70
963 5862 1.339097 CCCCCTCCCGTATCTTGTAG 58.661 60.000 0.00 0.00 0.00 2.74
980 5879 2.110213 TCAACACCGTCACAGCCC 59.890 61.111 0.00 0.00 0.00 5.19
981 5880 2.251642 GGTCAACACCGTCACAGCC 61.252 63.158 0.00 0.00 31.06 4.85
982 5881 3.330275 GGTCAACACCGTCACAGC 58.670 61.111 0.00 0.00 31.06 4.40
997 5896 0.409092 TGCAACATCTTCCCCATGGT 59.591 50.000 11.73 0.00 0.00 3.55
1007 5907 1.676916 CCAGGACGACATGCAACATCT 60.677 52.381 0.00 0.00 0.00 2.90
1012 5912 1.302431 CCACCAGGACGACATGCAA 60.302 57.895 0.00 0.00 36.89 4.08
1013 5913 2.347114 CCACCAGGACGACATGCA 59.653 61.111 0.00 0.00 36.89 3.96
1028 5928 4.682334 CCATGGCCAGCACCACCA 62.682 66.667 13.05 0.00 44.17 4.17
1101 6001 0.839277 TGTGGATGGCGATCTTGGAT 59.161 50.000 8.71 0.00 0.00 3.41
1192 6120 3.005554 GAGCAACTGAGCAAGCTAATCA 58.994 45.455 0.00 0.00 37.48 2.57
1193 6121 3.005554 TGAGCAACTGAGCAAGCTAATC 58.994 45.455 0.00 0.00 37.48 1.75
1264 6507 6.587560 AATATGGATTGGAGGGAGATATGG 57.412 41.667 0.00 0.00 0.00 2.74
1278 6527 9.071276 CCTAGTGAGCAACAATTAATATGGATT 57.929 33.333 0.00 0.00 0.00 3.01
1284 6533 9.158233 GTTGTACCTAGTGAGCAACAATTAATA 57.842 33.333 0.00 0.00 39.17 0.98
1302 6551 8.015185 TCACTTTGTACTCTAAAGTTGTACCT 57.985 34.615 6.99 0.00 43.71 3.08
1306 6555 7.037438 TCGTTCACTTTGTACTCTAAAGTTGT 58.963 34.615 6.99 0.00 43.71 3.32
1336 6586 7.259290 ACACTCAAAAGTTCACGATTTGTAT 57.741 32.000 0.00 0.84 35.92 2.29
1367 6887 5.046376 TGAGTCCAGCTGTATTTCTCATCAA 60.046 40.000 13.81 0.00 0.00 2.57
1378 6898 4.020307 TCATCACAAATGAGTCCAGCTGTA 60.020 41.667 13.81 0.00 38.57 2.74
1380 6900 3.340928 TCATCACAAATGAGTCCAGCTG 58.659 45.455 6.78 6.78 38.57 4.24
1384 6904 3.688235 TGCATCATCACAAATGAGTCCA 58.312 40.909 0.00 0.00 38.57 4.02
1569 8281 0.909610 AATCGGCAGGGGAGAAGACA 60.910 55.000 0.00 0.00 0.00 3.41
1600 8312 2.092323 GAATGCTAAGGGAAAAGGCGT 58.908 47.619 0.00 0.00 0.00 5.68
1601 8313 2.369394 AGAATGCTAAGGGAAAAGGCG 58.631 47.619 0.00 0.00 0.00 5.52
1602 8314 4.098044 GGTTAGAATGCTAAGGGAAAAGGC 59.902 45.833 0.00 0.00 37.28 4.35
1624 8383 0.472734 CCCAGAGGATCCTACAGGGG 60.473 65.000 27.16 23.47 33.66 4.79
1644 8403 8.267894 ACCATACATATTAGTATTCCTCCATGC 58.732 37.037 0.00 0.00 32.56 4.06
1649 8412 9.680315 GCGATACCATACATATTAGTATTCCTC 57.320 37.037 0.00 0.00 32.56 3.71
1655 8418 7.758076 GCACAAGCGATACCATACATATTAGTA 59.242 37.037 0.00 0.00 0.00 1.82
1657 8420 6.589907 TGCACAAGCGATACCATACATATTAG 59.410 38.462 0.00 0.00 46.23 1.73
1774 8554 7.176865 CCATGCATGAATTTCAGGAGAAGATAT 59.823 37.037 28.31 0.00 34.71 1.63
1775 8555 6.489022 CCATGCATGAATTTCAGGAGAAGATA 59.511 38.462 28.31 0.00 34.71 1.98
1873 9596 2.168521 AGTTGGCGTACTGATACTGCAT 59.831 45.455 0.00 0.00 34.52 3.96
2197 10055 0.248336 CGTCGATGTTGTAGCCGCTA 60.248 55.000 0.00 0.00 0.00 4.26
2207 10065 1.673808 GGGTAGGCCTCGTCGATGTT 61.674 60.000 9.68 0.00 34.45 2.71
2314 10181 0.101040 GGTACGTACCGCACATGCTA 59.899 55.000 28.00 0.00 39.32 3.49
2382 10283 2.098280 TGAAAACACACCATGAACCACG 59.902 45.455 0.00 0.00 0.00 4.94
2532 10638 4.990526 ACTGGTCTTGAGTGATCCATTTT 58.009 39.130 0.00 0.00 0.00 1.82
2533 10639 4.647564 ACTGGTCTTGAGTGATCCATTT 57.352 40.909 0.00 0.00 0.00 2.32
2534 10640 4.583871 GAACTGGTCTTGAGTGATCCATT 58.416 43.478 0.00 0.00 0.00 3.16
2535 10641 3.368843 CGAACTGGTCTTGAGTGATCCAT 60.369 47.826 0.00 0.00 0.00 3.41
2540 10646 3.194861 CAAACGAACTGGTCTTGAGTGA 58.805 45.455 0.00 0.00 0.00 3.41
2541 10647 2.286418 GCAAACGAACTGGTCTTGAGTG 60.286 50.000 0.00 0.00 0.00 3.51
2563 10683 4.003648 GCTCTTGTAAGTGTACCTGCATT 58.996 43.478 0.00 0.00 0.00 3.56
2687 10810 1.278127 CGTACCTTTCCCATGTCACCT 59.722 52.381 0.00 0.00 0.00 4.00
2707 10830 3.060895 GCATGCGTCACAAAGAGTACTAC 59.939 47.826 0.00 0.00 0.00 2.73
2708 10831 3.250744 GCATGCGTCACAAAGAGTACTA 58.749 45.455 0.00 0.00 0.00 1.82
2709 10832 2.069273 GCATGCGTCACAAAGAGTACT 58.931 47.619 0.00 0.00 0.00 2.73
2710 10833 1.798223 TGCATGCGTCACAAAGAGTAC 59.202 47.619 14.09 0.00 0.00 2.73
2743 10884 6.846350 GGACAGTTCCTTTATTTCATGTCAG 58.154 40.000 0.00 0.00 39.13 3.51
2793 10934 3.197766 CCATGTAGGGCATATATGTCGGT 59.802 47.826 14.14 5.44 35.74 4.69
2806 10947 0.625849 AAAGGCCAGACCATGTAGGG 59.374 55.000 5.01 0.00 43.89 3.53
3074 11272 3.118482 ACACTGCTCCATATGGACAAGAG 60.118 47.826 25.73 21.66 39.78 2.85
3110 11427 0.531974 TGCACACGGAAGACAAGGAC 60.532 55.000 0.00 0.00 0.00 3.85
3307 11683 2.431782 CACCCATTTCAAGCCCAATAGG 59.568 50.000 0.00 0.00 39.47 2.57
3316 11692 3.592059 CTTTGATGGCACCCATTTCAAG 58.408 45.455 0.00 0.00 45.26 3.02
3326 11828 2.228822 CACCTTGTACCTTTGATGGCAC 59.771 50.000 0.00 0.00 0.00 5.01
3764 12279 0.755686 GATCCCTGAAGACGCTCCAT 59.244 55.000 0.00 0.00 0.00 3.41
3863 12378 1.131883 ACGGTGAAGGAATCGTAGACG 59.868 52.381 0.00 0.00 42.51 4.18
3992 12507 2.152016 GACCAACCTTGTTAGCCACTC 58.848 52.381 0.00 0.00 0.00 3.51
3995 12510 3.737702 GGACCAACCTTGTTAGCCA 57.262 52.632 0.00 0.00 35.41 4.75
4027 12542 2.094545 GCTGGCCAGTTTTATTCCACAG 60.095 50.000 32.81 4.47 0.00 3.66
4059 12574 8.246871 GCTCAGGCTTTTGATCTAAAAACTAAT 58.753 33.333 3.95 0.00 37.78 1.73
4083 12598 4.134563 ACATTTTCGTTTACTCACCAGCT 58.865 39.130 0.00 0.00 0.00 4.24
4086 12601 6.711194 TGGATTACATTTTCGTTTACTCACCA 59.289 34.615 0.00 0.00 0.00 4.17
4124 12639 6.653526 ATAAATCGGCAATCATCAATGGAA 57.346 33.333 0.00 0.00 0.00 3.53
4125 12640 7.757941 TTATAAATCGGCAATCATCAATGGA 57.242 32.000 0.00 0.00 0.00 3.41
4149 12664 0.460311 CTACTCGCTCCGGGTTCATT 59.540 55.000 0.00 0.00 37.20 2.57
4201 12732 2.486982 TCCACGTACTACTTCTGCTCAC 59.513 50.000 0.00 0.00 0.00 3.51
4202 12733 2.786777 TCCACGTACTACTTCTGCTCA 58.213 47.619 0.00 0.00 0.00 4.26
4203 12734 3.844577 TTCCACGTACTACTTCTGCTC 57.155 47.619 0.00 0.00 0.00 4.26
4204 12735 3.181499 CGATTCCACGTACTACTTCTGCT 60.181 47.826 0.00 0.00 0.00 4.24
4205 12736 3.106672 CGATTCCACGTACTACTTCTGC 58.893 50.000 0.00 0.00 0.00 4.26
4206 12737 4.611310 TCGATTCCACGTACTACTTCTG 57.389 45.455 0.00 0.00 34.70 3.02
4209 12740 6.205101 AGAATTCGATTCCACGTACTACTT 57.795 37.500 0.00 0.00 40.13 2.24
4212 12743 4.802039 GCAAGAATTCGATTCCACGTACTA 59.198 41.667 0.00 0.00 40.13 1.82
4306 12898 1.339711 CAAATCAAAAGGCGGCGAAG 58.660 50.000 12.98 0.00 0.00 3.79
4325 12917 1.135228 ACAGTTTGTTTGTTGCCGTCC 60.135 47.619 0.00 0.00 0.00 4.79
4362 12954 7.390996 TCTCGAGGGAAAAGTATATAGCTACTG 59.609 40.741 13.56 0.00 32.32 2.74
4411 13004 4.894114 GGGTATCCACTCCAGCGTATATAT 59.106 45.833 0.00 0.00 0.00 0.86
4412 13005 4.017775 AGGGTATCCACTCCAGCGTATATA 60.018 45.833 0.00 0.00 34.83 0.86
4413 13006 3.097614 GGGTATCCACTCCAGCGTATAT 58.902 50.000 0.00 0.00 0.00 0.86
4414 13007 2.109480 AGGGTATCCACTCCAGCGTATA 59.891 50.000 0.00 0.00 34.83 1.47
4534 13127 2.038426 TCCGAGATGAGTCTGGCAAAAA 59.962 45.455 0.00 0.00 33.97 1.94
4535 13128 1.623311 TCCGAGATGAGTCTGGCAAAA 59.377 47.619 0.00 0.00 33.97 2.44
4536 13129 1.205655 CTCCGAGATGAGTCTGGCAAA 59.794 52.381 0.00 0.00 33.97 3.68
4537 13130 0.820226 CTCCGAGATGAGTCTGGCAA 59.180 55.000 0.00 0.00 33.97 4.52
4538 13131 0.323816 ACTCCGAGATGAGTCTGGCA 60.324 55.000 1.33 0.00 41.75 4.92
4539 13132 2.499214 ACTCCGAGATGAGTCTGGC 58.501 57.895 1.33 0.00 41.75 4.85
4545 13138 0.660488 CACCGAGACTCCGAGATGAG 59.340 60.000 1.33 0.00 38.37 2.90
4546 13139 0.748367 CCACCGAGACTCCGAGATGA 60.748 60.000 1.33 0.00 0.00 2.92
4547 13140 1.032657 ACCACCGAGACTCCGAGATG 61.033 60.000 1.33 0.00 0.00 2.90
4548 13141 1.032657 CACCACCGAGACTCCGAGAT 61.033 60.000 1.33 0.00 0.00 2.75
4549 13142 1.674651 CACCACCGAGACTCCGAGA 60.675 63.158 1.33 0.00 0.00 4.04
4550 13143 2.701780 CCACCACCGAGACTCCGAG 61.702 68.421 0.00 0.00 0.00 4.63
4551 13144 2.675423 CCACCACCGAGACTCCGA 60.675 66.667 0.00 0.00 0.00 4.55
4552 13145 2.989824 ACCACCACCGAGACTCCG 60.990 66.667 0.00 0.00 0.00 4.63
4553 13146 1.755393 AACACCACCACCGAGACTCC 61.755 60.000 0.00 0.00 0.00 3.85
4554 13147 0.600255 CAACACCACCACCGAGACTC 60.600 60.000 0.00 0.00 0.00 3.36
4555 13148 1.445942 CAACACCACCACCGAGACT 59.554 57.895 0.00 0.00 0.00 3.24
4556 13149 2.251642 GCAACACCACCACCGAGAC 61.252 63.158 0.00 0.00 0.00 3.36
4654 13247 3.466836 TCAACAGTGCGAGTTTCATTCT 58.533 40.909 0.00 0.00 0.00 2.40
4659 13252 2.095213 TGTGTTCAACAGTGCGAGTTTC 59.905 45.455 0.00 0.00 33.78 2.78
4746 13368 7.479980 TGTTAGATGTTTTGGAACTTCACAAG 58.520 34.615 7.59 0.00 40.52 3.16
4812 13435 6.452494 TGTTCGGGATAAAAAGTGTTTGAA 57.548 33.333 0.00 0.00 0.00 2.69
4865 13488 8.700722 ATGTGCTTGCATTTTCGAAAAATATA 57.299 26.923 25.77 10.93 0.00 0.86
4867 13490 7.418840 AATGTGCTTGCATTTTCGAAAAATA 57.581 28.000 25.77 12.89 35.76 1.40
4881 13504 5.406767 TCATGTTTTCAAAATGTGCTTGC 57.593 34.783 0.00 0.00 0.00 4.01
4883 13506 6.594937 AGTGTTCATGTTTTCAAAATGTGCTT 59.405 30.769 0.00 0.00 0.00 3.91
4917 13540 5.667539 TCACAGTTTCAAAATTGTTCCCA 57.332 34.783 1.36 0.00 36.83 4.37
4920 13543 9.824534 ATTTTGTTCACAGTTTCAAAATTGTTC 57.175 25.926 11.33 0.00 43.34 3.18
4925 13548 8.242739 CCCAAATTTTGTTCACAGTTTCAAAAT 58.757 29.630 8.26 11.33 45.83 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.