Multiple sequence alignment - TraesCS1D01G400800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G400800 chr1D 100.000 3343 0 0 1 3343 467298398 467301740 0.000000e+00 6174.0
1 TraesCS1D01G400800 chr1D 86.633 980 93 19 779 1747 467108734 467107782 0.000000e+00 1050.0
2 TraesCS1D01G400800 chr1D 96.817 597 12 2 2748 3343 74537124 74537714 0.000000e+00 990.0
3 TraesCS1D01G400800 chr1D 88.858 359 23 9 2002 2343 467107446 467107088 3.080000e-115 425.0
4 TraesCS1D01G400800 chr1D 93.878 49 3 0 25 73 190459213 190459261 1.290000e-09 75.0
5 TraesCS1D01G400800 chr1D 89.286 56 5 1 25 79 435997047 435996992 5.980000e-08 69.4
6 TraesCS1D01G400800 chr1D 100.000 32 0 0 360 391 318564798 318564767 3.600000e-05 60.2
7 TraesCS1D01G400800 chr1D 100.000 28 0 0 1 28 376883592 376883565 6.000000e-03 52.8
8 TraesCS1D01G400800 chr1D 100.000 28 0 0 1 28 428599499 428599526 6.000000e-03 52.8
9 TraesCS1D01G400800 chr1B 91.236 1974 97 28 399 2346 644799606 644797683 0.000000e+00 2617.0
10 TraesCS1D01G400800 chr1B 82.869 1220 137 41 553 1729 643908755 643907565 0.000000e+00 1029.0
11 TraesCS1D01G400800 chr1B 87.722 790 75 11 985 1752 644527399 644526610 0.000000e+00 902.0
12 TraesCS1D01G400800 chr1B 84.082 735 92 12 1025 1747 644310583 644311304 0.000000e+00 686.0
13 TraesCS1D01G400800 chr1B 88.863 422 41 1 985 1400 644341714 644342135 6.400000e-142 514.0
14 TraesCS1D01G400800 chr1B 88.952 353 18 6 2014 2345 644526307 644525955 1.860000e-112 416.0
15 TraesCS1D01G400800 chr1B 86.898 374 33 9 1371 1734 645095715 645096082 4.020000e-109 405.0
16 TraesCS1D01G400800 chr1B 91.873 283 19 4 1996 2274 644311463 644311745 3.130000e-105 392.0
17 TraesCS1D01G400800 chr1B 84.359 390 49 1 967 1344 645092878 645093267 4.070000e-99 372.0
18 TraesCS1D01G400800 chr1B 90.377 239 18 4 92 328 644799852 644799617 3.240000e-80 309.0
19 TraesCS1D01G400800 chr1B 95.930 172 4 3 2357 2526 644797569 644797399 3.290000e-70 276.0
20 TraesCS1D01G400800 chr1B 85.366 246 36 0 2014 2259 645096755 645097000 4.280000e-64 255.0
21 TraesCS1D01G400800 chr1B 84.058 207 12 6 2160 2345 644342146 644342352 2.650000e-41 180.0
22 TraesCS1D01G400800 chr1B 80.335 239 32 10 657 883 644309831 644310066 2.060000e-37 167.0
23 TraesCS1D01G400800 chr1B 93.407 91 5 1 2002 2091 643907237 643907147 2.090000e-27 134.0
24 TraesCS1D01G400800 chr1A 90.215 1952 104 34 456 2344 559348790 559350717 0.000000e+00 2466.0
25 TraesCS1D01G400800 chr1A 85.267 991 102 24 784 1747 559045779 559044806 0.000000e+00 981.0
26 TraesCS1D01G400800 chr1A 89.197 361 22 9 1999 2343 559044492 559044133 5.120000e-118 435.0
27 TraesCS1D01G400800 chr1A 90.508 295 16 7 1996 2279 559232409 559232116 2.430000e-101 379.0
28 TraesCS1D01G400800 chr1A 94.152 171 4 6 2357 2526 559350835 559351000 4.280000e-64 255.0
29 TraesCS1D01G400800 chr1A 92.308 169 13 0 100 268 559347876 559348044 1.200000e-59 241.0
30 TraesCS1D01G400800 chr1A 89.394 66 7 0 1682 1747 559232658 559232593 2.140000e-12 84.2
31 TraesCS1D01G400800 chr1A 100.000 44 0 0 348 391 94620847 94620804 7.690000e-12 82.4
32 TraesCS1D01G400800 chr1A 89.286 56 5 1 25 79 234589579 234589524 5.980000e-08 69.4
33 TraesCS1D01G400800 chr5D 92.152 841 43 9 2524 3343 12313175 12314013 0.000000e+00 1166.0
34 TraesCS1D01G400800 chr5D 91.487 834 42 14 2527 3343 436806398 436807219 0.000000e+00 1120.0
35 TraesCS1D01G400800 chr5D 100.000 44 0 0 348 391 79793538 79793581 7.690000e-12 82.4
36 TraesCS1D01G400800 chr5D 97.727 44 1 0 348 391 80057925 80057968 3.580000e-10 76.8
37 TraesCS1D01G400800 chr5D 91.071 56 4 1 25 79 370192876 370192821 1.290000e-09 75.0
38 TraesCS1D01G400800 chr5D 91.071 56 4 1 25 79 498839794 498839739 1.290000e-09 75.0
39 TraesCS1D01G400800 chr5D 93.878 49 3 0 25 73 521220523 521220571 1.290000e-09 75.0
40 TraesCS1D01G400800 chr5D 100.000 39 0 0 351 389 357533690 357533728 4.630000e-09 73.1
41 TraesCS1D01G400800 chr5D 100.000 28 0 0 1 28 226837845 226837872 6.000000e-03 52.8
42 TraesCS1D01G400800 chr7D 92.455 835 29 17 2527 3343 136202448 136201630 0.000000e+00 1162.0
43 TraesCS1D01G400800 chr7D 88.134 868 27 28 2527 3343 219905175 219906017 0.000000e+00 963.0
44 TraesCS1D01G400800 chr7D 91.071 56 4 1 25 79 31178334 31178389 1.290000e-09 75.0
45 TraesCS1D01G400800 chr7D 91.071 56 4 1 25 79 238518650 238518705 1.290000e-09 75.0
46 TraesCS1D01G400800 chr7D 100.000 28 0 0 1 28 319747242 319747215 6.000000e-03 52.8
47 TraesCS1D01G400800 chr3D 91.914 841 31 16 2527 3343 307099502 307098675 0.000000e+00 1142.0
48 TraesCS1D01G400800 chr3D 96.854 604 11 3 2748 3343 82121417 82120814 0.000000e+00 1003.0
49 TraesCS1D01G400800 chr3D 96.839 601 14 5 2748 3343 104205006 104204406 0.000000e+00 1000.0
50 TraesCS1D01G400800 chr6D 91.687 830 33 17 2527 3343 256722310 256721504 0.000000e+00 1118.0
51 TraesCS1D01G400800 chr6D 97.500 600 11 4 2748 3343 139931476 139930877 0.000000e+00 1022.0
52 TraesCS1D01G400800 chr6D 93.416 243 7 5 2528 2761 139931748 139931506 5.310000e-93 351.0
53 TraesCS1D01G400800 chr6D 94.397 232 7 2 2527 2752 293105595 293105364 5.310000e-93 351.0
54 TraesCS1D01G400800 chr6D 91.071 56 4 1 25 79 304494686 304494631 1.290000e-09 75.0
55 TraesCS1D01G400800 chr6D 90.196 51 4 1 30 79 246100052 246100002 7.740000e-07 65.8
56 TraesCS1D01G400800 chr6D 87.500 56 6 1 25 79 197599661 197599606 2.780000e-06 63.9
57 TraesCS1D01G400800 chr2D 93.927 247 6 5 2524 2761 532005618 532005864 6.820000e-97 364.0
58 TraesCS1D01G400800 chr2D 91.071 56 4 1 25 79 478887301 478887246 1.290000e-09 75.0
59 TraesCS1D01G400800 chr2D 100.000 28 0 0 1 28 377287105 377287078 6.000000e-03 52.8
60 TraesCS1D01G400800 chr5A 100.000 49 0 0 25 73 696759299 696759347 1.280000e-14 91.6
61 TraesCS1D01G400800 chr5A 100.000 41 0 0 351 391 492869670 492869630 3.580000e-10 76.8
62 TraesCS1D01G400800 chrUn 100.000 44 0 0 348 391 189385967 189386010 7.690000e-12 82.4
63 TraesCS1D01G400800 chrUn 100.000 44 0 0 348 391 332081920 332081963 7.690000e-12 82.4
64 TraesCS1D01G400800 chrUn 100.000 44 0 0 348 391 332084740 332084783 7.690000e-12 82.4
65 TraesCS1D01G400800 chrUn 100.000 44 0 0 348 391 359271525 359271568 7.690000e-12 82.4
66 TraesCS1D01G400800 chr4D 100.000 44 0 0 348 391 123676426 123676383 7.690000e-12 82.4
67 TraesCS1D01G400800 chr4D 91.837 49 4 0 25 73 58035087 58035135 5.980000e-08 69.4
68 TraesCS1D01G400800 chr4D 91.837 49 4 0 25 73 324378616 324378568 5.980000e-08 69.4
69 TraesCS1D01G400800 chr4D 100.000 35 0 0 25 59 206117684 206117718 7.740000e-07 65.8
70 TraesCS1D01G400800 chr3A 100.000 44 0 0 348 391 725810707 725810664 7.690000e-12 82.4
71 TraesCS1D01G400800 chr3A 100.000 29 0 0 2 30 580921070 580921098 2.000000e-03 54.7
72 TraesCS1D01G400800 chr7B 93.878 49 3 0 25 73 91333897 91333849 1.290000e-09 75.0
73 TraesCS1D01G400800 chr6A 91.071 56 4 1 25 79 85507089 85507034 1.290000e-09 75.0
74 TraesCS1D01G400800 chr6A 100.000 29 0 0 2 30 181707429 181707457 2.000000e-03 54.7
75 TraesCS1D01G400800 chr5B 91.071 56 4 1 25 79 569741832 569741777 1.290000e-09 75.0
76 TraesCS1D01G400800 chr5B 100.000 29 0 0 2 30 424519488 424519516 2.000000e-03 54.7
77 TraesCS1D01G400800 chr4B 89.286 56 5 1 25 79 615695181 615695126 5.980000e-08 69.4
78 TraesCS1D01G400800 chr3B 100.000 28 0 0 1 28 382449652 382449625 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G400800 chr1D 467298398 467301740 3342 False 6174.000000 6174 100.000000 1 3343 1 chr1D.!!$F4 3342
1 TraesCS1D01G400800 chr1D 74537124 74537714 590 False 990.000000 990 96.817000 2748 3343 1 chr1D.!!$F1 595
2 TraesCS1D01G400800 chr1D 467107088 467108734 1646 True 737.500000 1050 87.745500 779 2343 2 chr1D.!!$R4 1564
3 TraesCS1D01G400800 chr1B 644797399 644799852 2453 True 1067.333333 2617 92.514333 92 2526 3 chr1B.!!$R3 2434
4 TraesCS1D01G400800 chr1B 644525955 644527399 1444 True 659.000000 902 88.337000 985 2345 2 chr1B.!!$R2 1360
5 TraesCS1D01G400800 chr1B 643907147 643908755 1608 True 581.500000 1029 88.138000 553 2091 2 chr1B.!!$R1 1538
6 TraesCS1D01G400800 chr1B 644309831 644311745 1914 False 415.000000 686 85.430000 657 2274 3 chr1B.!!$F1 1617
7 TraesCS1D01G400800 chr1B 644341714 644342352 638 False 347.000000 514 86.460500 985 2345 2 chr1B.!!$F2 1360
8 TraesCS1D01G400800 chr1B 645092878 645097000 4122 False 344.000000 405 85.541000 967 2259 3 chr1B.!!$F3 1292
9 TraesCS1D01G400800 chr1A 559347876 559351000 3124 False 987.333333 2466 92.225000 100 2526 3 chr1A.!!$F1 2426
10 TraesCS1D01G400800 chr1A 559044133 559045779 1646 True 708.000000 981 87.232000 784 2343 2 chr1A.!!$R3 1559
11 TraesCS1D01G400800 chr1A 559232116 559232658 542 True 231.600000 379 89.951000 1682 2279 2 chr1A.!!$R4 597
12 TraesCS1D01G400800 chr5D 12313175 12314013 838 False 1166.000000 1166 92.152000 2524 3343 1 chr5D.!!$F1 819
13 TraesCS1D01G400800 chr5D 436806398 436807219 821 False 1120.000000 1120 91.487000 2527 3343 1 chr5D.!!$F6 816
14 TraesCS1D01G400800 chr7D 136201630 136202448 818 True 1162.000000 1162 92.455000 2527 3343 1 chr7D.!!$R1 816
15 TraesCS1D01G400800 chr7D 219905175 219906017 842 False 963.000000 963 88.134000 2527 3343 1 chr7D.!!$F2 816
16 TraesCS1D01G400800 chr3D 307098675 307099502 827 True 1142.000000 1142 91.914000 2527 3343 1 chr3D.!!$R3 816
17 TraesCS1D01G400800 chr3D 82120814 82121417 603 True 1003.000000 1003 96.854000 2748 3343 1 chr3D.!!$R1 595
18 TraesCS1D01G400800 chr3D 104204406 104205006 600 True 1000.000000 1000 96.839000 2748 3343 1 chr3D.!!$R2 595
19 TraesCS1D01G400800 chr6D 256721504 256722310 806 True 1118.000000 1118 91.687000 2527 3343 1 chr6D.!!$R3 816
20 TraesCS1D01G400800 chr6D 139930877 139931748 871 True 686.500000 1022 95.458000 2528 3343 2 chr6D.!!$R6 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 995 0.323360 CCCCAGCATTTCTTCCCGAA 60.323 55.0 0.0 0.0 0.0 4.30 F
376 1008 0.539986 TCCCGAAGTGATACCTTGGC 59.460 55.0 0.0 0.0 0.0 4.52 F
377 1009 0.541863 CCCGAAGTGATACCTTGGCT 59.458 55.0 0.0 0.0 0.0 4.75 F
761 1402 0.583438 CTTGCCACGTCACTTCACTG 59.417 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 5351 0.179056 AGCACAACACTACGCTTGGT 60.179 50.000 0.00 0.00 0.00 3.67 R
1813 5422 0.319083 ACCAAACCATGCATGCACAG 59.681 50.000 25.37 19.53 0.00 3.66 R
2245 6321 1.990614 GGGAAGAGCTCGAAGGGGT 60.991 63.158 8.37 0.00 0.00 4.95 R
2428 6720 1.407258 AGTGCTGCTGCTACTACTAGC 59.593 52.381 17.00 0.00 45.19 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.856162 TCAATAAATTTTACCACCTATACTCCC 57.144 33.333 0.00 0.00 0.00 4.30
31 32 9.074576 CAATAAATTTTACCACCTATACTCCCC 57.925 37.037 0.00 0.00 0.00 4.81
32 33 6.661740 AAATTTTACCACCTATACTCCCCA 57.338 37.500 0.00 0.00 0.00 4.96
33 34 6.858792 AATTTTACCACCTATACTCCCCAT 57.141 37.500 0.00 0.00 0.00 4.00
34 35 5.640158 TTTTACCACCTATACTCCCCATG 57.360 43.478 0.00 0.00 0.00 3.66
35 36 2.118403 ACCACCTATACTCCCCATGG 57.882 55.000 4.14 4.14 0.00 3.66
36 37 1.362224 CCACCTATACTCCCCATGGG 58.638 60.000 25.30 25.30 46.11 4.00
38 39 1.978580 CACCTATACTCCCCATGGGAC 59.021 57.143 33.62 0.00 46.17 4.46
39 40 1.583611 ACCTATACTCCCCATGGGACA 59.416 52.381 33.62 17.04 46.17 4.02
40 41 2.021441 ACCTATACTCCCCATGGGACAA 60.021 50.000 33.62 15.80 46.17 3.18
41 42 2.639839 CCTATACTCCCCATGGGACAAG 59.360 54.545 33.62 25.59 46.17 3.16
42 43 0.846693 ATACTCCCCATGGGACAAGC 59.153 55.000 33.62 0.00 46.17 4.01
43 44 0.548926 TACTCCCCATGGGACAAGCA 60.549 55.000 33.62 13.91 46.17 3.91
44 45 1.217057 ACTCCCCATGGGACAAGCAT 61.217 55.000 33.62 8.52 46.17 3.79
45 46 0.846015 CTCCCCATGGGACAAGCATA 59.154 55.000 33.62 5.70 46.17 3.14
46 47 1.426598 CTCCCCATGGGACAAGCATAT 59.573 52.381 33.62 0.00 46.17 1.78
47 48 1.145531 TCCCCATGGGACAAGCATATG 59.854 52.381 33.62 11.22 46.17 1.78
48 49 3.237693 TCCCCATGGGACAAGCATATGA 61.238 50.000 33.62 13.57 46.17 2.15
49 50 4.729092 TCCCCATGGGACAAGCATATGAA 61.729 47.826 33.62 0.00 46.17 2.57
50 51 6.178857 TCCCCATGGGACAAGCATATGAAA 62.179 45.833 33.62 0.00 46.17 2.69
81 82 6.597832 AAATTGGGATTTATGGTTTCACGA 57.402 33.333 0.00 0.00 33.78 4.35
82 83 5.576447 ATTGGGATTTATGGTTTCACGAC 57.424 39.130 0.00 0.00 0.00 4.34
83 84 4.022413 TGGGATTTATGGTTTCACGACA 57.978 40.909 0.00 0.00 0.00 4.35
84 85 3.754323 TGGGATTTATGGTTTCACGACAC 59.246 43.478 0.00 0.00 0.00 3.67
85 86 4.007659 GGGATTTATGGTTTCACGACACT 58.992 43.478 0.00 0.00 0.00 3.55
86 87 4.457949 GGGATTTATGGTTTCACGACACTT 59.542 41.667 0.00 0.00 0.00 3.16
87 88 5.644636 GGGATTTATGGTTTCACGACACTTA 59.355 40.000 0.00 0.00 0.00 2.24
88 89 6.317893 GGGATTTATGGTTTCACGACACTTAT 59.682 38.462 0.00 0.00 0.00 1.73
89 90 7.148137 GGGATTTATGGTTTCACGACACTTATT 60.148 37.037 0.00 0.00 0.00 1.40
90 91 8.885722 GGATTTATGGTTTCACGACACTTATTA 58.114 33.333 0.00 0.00 0.00 0.98
93 94 6.677781 ATGGTTTCACGACACTTATTATGG 57.322 37.500 0.00 0.00 0.00 2.74
94 95 5.795972 TGGTTTCACGACACTTATTATGGA 58.204 37.500 0.00 0.00 0.00 3.41
95 96 6.231951 TGGTTTCACGACACTTATTATGGAA 58.768 36.000 0.00 0.00 0.00 3.53
96 97 6.882140 TGGTTTCACGACACTTATTATGGAAT 59.118 34.615 0.00 0.00 0.00 3.01
97 98 7.148323 TGGTTTCACGACACTTATTATGGAATG 60.148 37.037 0.00 0.00 0.00 2.67
98 99 7.065324 GGTTTCACGACACTTATTATGGAATGA 59.935 37.037 0.00 0.00 0.00 2.57
161 162 1.136891 AGTGACCTGCCTTTTGTTTGC 59.863 47.619 0.00 0.00 0.00 3.68
173 174 1.077123 TTGTTTGCGTGTGTGTACGT 58.923 45.000 0.00 0.00 45.36 3.57
196 197 3.492011 GTCAACCTTGTACGTGGTGTTAG 59.508 47.826 9.88 2.84 36.57 2.34
198 199 3.655276 ACCTTGTACGTGGTGTTAGAG 57.345 47.619 8.55 0.00 34.90 2.43
325 957 6.359480 GTCCATTCGACCGAATAAAATTCT 57.641 37.500 16.01 0.00 42.30 2.40
339 971 9.185192 CGAATAAAATTCTTTGAGAGCAAAACT 57.815 29.630 0.00 0.00 42.96 2.66
348 980 1.228552 GAGCAAAACTCTGCCCCCA 60.229 57.895 0.00 0.00 43.73 4.96
349 981 1.228675 AGCAAAACTCTGCCCCCAG 60.229 57.895 0.00 0.00 43.73 4.45
350 982 2.935740 GCAAAACTCTGCCCCCAGC 61.936 63.158 0.00 0.00 39.00 4.85
359 991 3.621225 GCCCCCAGCATTTCTTCC 58.379 61.111 0.00 0.00 42.97 3.46
360 992 2.060383 GCCCCCAGCATTTCTTCCC 61.060 63.158 0.00 0.00 42.97 3.97
361 993 1.754234 CCCCCAGCATTTCTTCCCG 60.754 63.158 0.00 0.00 0.00 5.14
362 994 1.302949 CCCCAGCATTTCTTCCCGA 59.697 57.895 0.00 0.00 0.00 5.14
363 995 0.323360 CCCCAGCATTTCTTCCCGAA 60.323 55.000 0.00 0.00 0.00 4.30
364 996 1.098050 CCCAGCATTTCTTCCCGAAG 58.902 55.000 0.00 0.00 39.71 3.79
365 997 1.614317 CCCAGCATTTCTTCCCGAAGT 60.614 52.381 4.45 0.00 39.38 3.01
366 998 1.470098 CCAGCATTTCTTCCCGAAGTG 59.530 52.381 4.45 0.00 40.98 3.16
367 999 2.426522 CAGCATTTCTTCCCGAAGTGA 58.573 47.619 4.45 0.00 40.62 3.41
368 1000 3.012518 CAGCATTTCTTCCCGAAGTGAT 58.987 45.455 4.45 0.00 40.62 3.06
369 1001 4.191544 CAGCATTTCTTCCCGAAGTGATA 58.808 43.478 4.45 0.00 40.62 2.15
370 1002 4.034510 CAGCATTTCTTCCCGAAGTGATAC 59.965 45.833 4.45 0.00 40.62 2.24
371 1003 3.312697 GCATTTCTTCCCGAAGTGATACC 59.687 47.826 4.45 0.00 40.62 2.73
372 1004 4.770795 CATTTCTTCCCGAAGTGATACCT 58.229 43.478 4.45 0.00 40.62 3.08
373 1005 4.903045 TTTCTTCCCGAAGTGATACCTT 57.097 40.909 4.45 0.00 39.38 3.50
374 1006 3.887621 TCTTCCCGAAGTGATACCTTG 57.112 47.619 4.45 0.00 39.38 3.61
375 1007 2.500098 TCTTCCCGAAGTGATACCTTGG 59.500 50.000 4.45 0.00 39.38 3.61
376 1008 0.539986 TCCCGAAGTGATACCTTGGC 59.460 55.000 0.00 0.00 0.00 4.52
377 1009 0.541863 CCCGAAGTGATACCTTGGCT 59.458 55.000 0.00 0.00 0.00 4.75
378 1010 1.065418 CCCGAAGTGATACCTTGGCTT 60.065 52.381 0.00 0.00 0.00 4.35
379 1011 2.618045 CCCGAAGTGATACCTTGGCTTT 60.618 50.000 0.00 0.00 0.00 3.51
380 1012 2.420022 CCGAAGTGATACCTTGGCTTTG 59.580 50.000 0.00 0.00 0.00 2.77
381 1013 2.159517 CGAAGTGATACCTTGGCTTTGC 60.160 50.000 0.00 0.00 0.00 3.68
393 1025 2.849294 GGCTTTGCCCAAATAAACCA 57.151 45.000 0.00 0.00 44.06 3.67
394 1026 2.422597 GGCTTTGCCCAAATAAACCAC 58.577 47.619 0.00 0.00 44.06 4.16
397 1029 3.436359 GCTTTGCCCAAATAAACCACATG 59.564 43.478 0.00 0.00 0.00 3.21
411 1043 0.813184 CACATGACAGGGGCAATGAC 59.187 55.000 0.00 0.00 0.00 3.06
434 1066 8.620416 TGACCATCCGCAAATAATATATTATGC 58.380 33.333 16.89 16.54 33.51 3.14
593 1225 3.751175 CACGAAAGCATGGAAAAGTCCTA 59.249 43.478 0.00 0.00 45.22 2.94
642 1278 2.028766 GATGCATCACAGACGCGGTG 62.029 60.000 21.92 10.43 37.60 4.94
694 1335 2.036256 ATGGTGGCACTTCCCTGC 59.964 61.111 18.45 0.00 36.33 4.85
735 1376 1.432270 GCATCCACGTAGCTTGCTCC 61.432 60.000 0.00 0.00 0.00 4.70
761 1402 0.583438 CTTGCCACGTCACTTCACTG 59.417 55.000 0.00 0.00 0.00 3.66
807 1460 6.694447 TGGTTAGTTAGTTAGTTACTGCAGG 58.306 40.000 19.93 0.00 37.73 4.85
822 1480 5.762825 ACTGCAGGTGATAATTAATGCTG 57.237 39.130 19.93 0.00 38.22 4.41
841 1501 3.064958 GCTGCTGTCGCCTATATATACGA 59.935 47.826 0.00 2.29 34.43 3.43
842 1502 4.786927 GCTGCTGTCGCCTATATATACGAG 60.787 50.000 5.87 0.00 34.83 4.18
843 1503 3.626217 TGCTGTCGCCTATATATACGAGG 59.374 47.826 5.87 7.82 34.83 4.63
844 1504 3.003482 GCTGTCGCCTATATATACGAGGG 59.997 52.174 12.44 0.00 34.83 4.30
845 1505 4.449131 CTGTCGCCTATATATACGAGGGA 58.551 47.826 12.44 6.96 34.83 4.20
890 1552 1.887242 AAGTGCAAACGCTCGCAGA 60.887 52.632 0.00 0.00 39.20 4.26
918 1592 3.459965 CGGCTCTGCTCCTGCTCT 61.460 66.667 0.00 0.00 40.48 4.09
932 1606 3.634448 TCCTGCTCTGCTTCACTAGATAC 59.366 47.826 0.00 0.00 0.00 2.24
933 1607 3.636300 CCTGCTCTGCTTCACTAGATACT 59.364 47.826 0.00 0.00 0.00 2.12
934 1608 4.499526 CCTGCTCTGCTTCACTAGATACTG 60.500 50.000 0.00 0.00 0.00 2.74
935 1609 4.273318 TGCTCTGCTTCACTAGATACTGA 58.727 43.478 0.00 0.00 0.00 3.41
940 1614 7.652524 TCTGCTTCACTAGATACTGAGAAAT 57.347 36.000 0.00 0.00 0.00 2.17
950 1624 1.016130 ACTGAGAAATCAGGTGCGCG 61.016 55.000 0.00 0.00 41.76 6.86
1401 4929 2.398554 GGAGTACACGGACGCGGTA 61.399 63.158 12.47 0.00 0.00 4.02
1736 5286 3.797353 CCTGCGGGTAGGTGCCAT 61.797 66.667 2.29 0.00 32.99 4.40
1737 5287 2.439960 CCTGCGGGTAGGTGCCATA 61.440 63.158 2.29 0.00 32.99 2.74
1738 5288 1.227556 CTGCGGGTAGGTGCCATAC 60.228 63.158 0.00 0.00 0.00 2.39
1793 5349 3.008157 TCACTTTGTTACCCTTATCGCCA 59.992 43.478 0.00 0.00 0.00 5.69
1795 5351 4.216687 CACTTTGTTACCCTTATCGCCAAA 59.783 41.667 0.00 0.00 0.00 3.28
1809 5418 0.666374 GCCAAACCAAGCGTAGTGTT 59.334 50.000 0.00 0.00 0.00 3.32
1810 5419 1.599419 GCCAAACCAAGCGTAGTGTTG 60.599 52.381 0.00 0.00 0.00 3.33
1811 5420 1.673920 CCAAACCAAGCGTAGTGTTGT 59.326 47.619 0.00 0.00 0.00 3.32
1812 5421 2.540769 CCAAACCAAGCGTAGTGTTGTG 60.541 50.000 0.00 0.00 0.00 3.33
1813 5422 0.661020 AACCAAGCGTAGTGTTGTGC 59.339 50.000 0.00 0.00 0.00 4.57
1859 5525 3.057609 CGCATTATTTAATTTAGCCGCGC 59.942 43.478 0.00 0.00 32.07 6.86
1893 5588 2.288825 TGAGTTCTTGGCAAGGACGTAG 60.289 50.000 28.26 3.39 42.10 3.51
2402 6694 1.894466 CCCAATGTGTCATGCTGGAAA 59.106 47.619 0.00 0.00 0.00 3.13
2428 6720 0.179148 GCCGGCCTTTGTAATTTCCG 60.179 55.000 18.11 0.00 36.90 4.30
2583 6884 2.489329 CAGAATGAACTGGGTGCGAAAT 59.511 45.455 0.00 0.00 39.69 2.17
2615 6917 2.218603 CCTGACCTTTTTGTGTAGCGT 58.781 47.619 0.00 0.00 0.00 5.07
2741 7080 0.807667 GAGCTAGGCGTCACACATGG 60.808 60.000 0.00 0.00 0.00 3.66
2795 7151 4.305956 CCACTTTGCTGGCCCCCT 62.306 66.667 0.00 0.00 0.00 4.79
2842 7233 1.261238 ACTCTCTCCCCGAGCTTTGG 61.261 60.000 0.00 0.00 39.70 3.28
2956 7347 5.386958 TCAAGGTAATATTCTCCGATCCG 57.613 43.478 0.00 0.00 0.00 4.18
2984 7375 6.017440 TGTTTTGATCCAAGTAAAGTTCTCCG 60.017 38.462 0.00 0.00 0.00 4.63
3226 7637 6.319715 AGGGTTAGGGTTGTTGTTTGATATT 58.680 36.000 0.00 0.00 0.00 1.28
3287 7699 3.378427 GTCTCATGGAAGCAATGTTACCC 59.622 47.826 0.00 0.00 0.00 3.69
3328 7740 1.106285 GGGATGGGAAGAACATGTGC 58.894 55.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.856162 GGGAGTATAGGTGGTAAAATTTATTGA 57.144 33.333 0.00 0.00 0.00 2.57
6 7 8.793720 TGGGGAGTATAGGTGGTAAAATTTATT 58.206 33.333 0.00 0.00 0.00 1.40
7 8 8.352808 TGGGGAGTATAGGTGGTAAAATTTAT 57.647 34.615 0.00 0.00 0.00 1.40
8 9 7.768324 TGGGGAGTATAGGTGGTAAAATTTA 57.232 36.000 0.00 0.00 0.00 1.40
9 10 6.661740 TGGGGAGTATAGGTGGTAAAATTT 57.338 37.500 0.00 0.00 0.00 1.82
10 11 6.411554 CCATGGGGAGTATAGGTGGTAAAATT 60.412 42.308 2.85 0.00 35.59 1.82
11 12 5.074515 CCATGGGGAGTATAGGTGGTAAAAT 59.925 44.000 2.85 0.00 35.59 1.82
12 13 4.414182 CCATGGGGAGTATAGGTGGTAAAA 59.586 45.833 2.85 0.00 35.59 1.52
13 14 3.977999 CCATGGGGAGTATAGGTGGTAAA 59.022 47.826 2.85 0.00 35.59 2.01
14 15 3.593942 CCATGGGGAGTATAGGTGGTAA 58.406 50.000 2.85 0.00 35.59 2.85
15 16 3.269592 CCATGGGGAGTATAGGTGGTA 57.730 52.381 2.85 0.00 35.59 3.25
16 17 2.118403 CCATGGGGAGTATAGGTGGT 57.882 55.000 2.85 0.00 35.59 4.16
28 29 1.145531 TCATATGCTTGTCCCATGGGG 59.854 52.381 30.93 15.56 46.11 4.96
29 30 2.662535 TCATATGCTTGTCCCATGGG 57.337 50.000 26.30 26.30 0.00 4.00
30 31 3.700539 TGTTTCATATGCTTGTCCCATGG 59.299 43.478 4.14 4.14 0.00 3.66
31 32 4.987408 TGTTTCATATGCTTGTCCCATG 57.013 40.909 0.00 0.00 0.00 3.66
55 56 9.409918 TCGTGAAACCATAAATCCCAATTTATA 57.590 29.630 3.73 0.00 43.20 0.98
56 57 8.194769 GTCGTGAAACCATAAATCCCAATTTAT 58.805 33.333 0.00 0.00 44.99 1.40
57 58 7.176865 TGTCGTGAAACCATAAATCCCAATTTA 59.823 33.333 0.00 0.00 40.64 1.40
58 59 6.015010 TGTCGTGAAACCATAAATCCCAATTT 60.015 34.615 0.00 0.00 38.61 1.82
59 60 5.478679 TGTCGTGAAACCATAAATCCCAATT 59.521 36.000 0.00 0.00 0.00 2.32
60 61 5.013547 TGTCGTGAAACCATAAATCCCAAT 58.986 37.500 0.00 0.00 0.00 3.16
61 62 4.216687 GTGTCGTGAAACCATAAATCCCAA 59.783 41.667 0.00 0.00 0.00 4.12
62 63 3.754323 GTGTCGTGAAACCATAAATCCCA 59.246 43.478 0.00 0.00 0.00 4.37
63 64 4.007659 AGTGTCGTGAAACCATAAATCCC 58.992 43.478 0.00 0.00 0.00 3.85
64 65 5.622770 AAGTGTCGTGAAACCATAAATCC 57.377 39.130 0.00 0.00 0.00 3.01
67 68 8.670135 CCATAATAAGTGTCGTGAAACCATAAA 58.330 33.333 0.00 0.00 0.00 1.40
68 69 8.041919 TCCATAATAAGTGTCGTGAAACCATAA 58.958 33.333 0.00 0.00 0.00 1.90
69 70 7.557724 TCCATAATAAGTGTCGTGAAACCATA 58.442 34.615 0.00 0.00 0.00 2.74
70 71 6.411376 TCCATAATAAGTGTCGTGAAACCAT 58.589 36.000 0.00 0.00 0.00 3.55
71 72 5.795972 TCCATAATAAGTGTCGTGAAACCA 58.204 37.500 0.00 0.00 0.00 3.67
72 73 6.730960 TTCCATAATAAGTGTCGTGAAACC 57.269 37.500 0.00 0.00 0.00 3.27
73 74 7.970384 TCATTCCATAATAAGTGTCGTGAAAC 58.030 34.615 0.00 0.00 0.00 2.78
74 75 8.554835 TTCATTCCATAATAAGTGTCGTGAAA 57.445 30.769 0.00 0.00 0.00 2.69
75 76 7.279981 CCTTCATTCCATAATAAGTGTCGTGAA 59.720 37.037 0.00 0.00 0.00 3.18
76 77 6.761242 CCTTCATTCCATAATAAGTGTCGTGA 59.239 38.462 0.00 0.00 0.00 4.35
77 78 6.761242 TCCTTCATTCCATAATAAGTGTCGTG 59.239 38.462 0.00 0.00 0.00 4.35
78 79 6.884832 TCCTTCATTCCATAATAAGTGTCGT 58.115 36.000 0.00 0.00 0.00 4.34
79 80 7.495934 ACTTCCTTCATTCCATAATAAGTGTCG 59.504 37.037 0.00 0.00 0.00 4.35
80 81 8.738645 ACTTCCTTCATTCCATAATAAGTGTC 57.261 34.615 0.00 0.00 0.00 3.67
81 82 9.614792 GTACTTCCTTCATTCCATAATAAGTGT 57.385 33.333 0.00 0.00 0.00 3.55
82 83 9.057089 GGTACTTCCTTCATTCCATAATAAGTG 57.943 37.037 0.00 0.00 0.00 3.16
83 84 8.778059 TGGTACTTCCTTCATTCCATAATAAGT 58.222 33.333 0.00 0.00 37.07 2.24
84 85 9.057089 GTGGTACTTCCTTCATTCCATAATAAG 57.943 37.037 0.00 0.00 37.07 1.73
85 86 8.553153 TGTGGTACTTCCTTCATTCCATAATAA 58.447 33.333 0.00 0.00 37.07 1.40
86 87 7.990886 GTGTGGTACTTCCTTCATTCCATAATA 59.009 37.037 0.00 0.00 37.07 0.98
87 88 6.828785 GTGTGGTACTTCCTTCATTCCATAAT 59.171 38.462 0.00 0.00 37.07 1.28
88 89 6.177610 GTGTGGTACTTCCTTCATTCCATAA 58.822 40.000 0.00 0.00 37.07 1.90
89 90 5.249622 TGTGTGGTACTTCCTTCATTCCATA 59.750 40.000 0.00 0.00 37.07 2.74
90 91 4.042809 TGTGTGGTACTTCCTTCATTCCAT 59.957 41.667 0.00 0.00 37.07 3.41
91 92 3.392947 TGTGTGGTACTTCCTTCATTCCA 59.607 43.478 0.00 0.00 37.07 3.53
92 93 4.015872 TGTGTGGTACTTCCTTCATTCC 57.984 45.455 0.00 0.00 37.07 3.01
93 94 4.142600 GCATGTGTGGTACTTCCTTCATTC 60.143 45.833 0.00 0.00 37.07 2.67
94 95 3.758554 GCATGTGTGGTACTTCCTTCATT 59.241 43.478 0.00 0.00 37.07 2.57
95 96 3.009473 AGCATGTGTGGTACTTCCTTCAT 59.991 43.478 0.00 0.00 37.07 2.57
96 97 2.371841 AGCATGTGTGGTACTTCCTTCA 59.628 45.455 0.00 0.00 37.07 3.02
97 98 3.059352 AGCATGTGTGGTACTTCCTTC 57.941 47.619 0.00 0.00 37.07 3.46
173 174 1.207570 ACACCACGTACAAGGTTGACA 59.792 47.619 3.59 0.00 35.52 3.58
268 269 8.586570 TTTTTACACAATGTCTTATTTGCCTG 57.413 30.769 0.00 0.00 0.00 4.85
306 938 8.263940 TCTCAAAGAATTTTATTCGGTCGAAT 57.736 30.769 20.10 20.10 41.37 3.34
344 976 0.323360 TTCGGGAAGAAATGCTGGGG 60.323 55.000 0.00 0.00 35.61 4.96
348 980 2.859165 TCACTTCGGGAAGAAATGCT 57.141 45.000 14.94 0.00 40.79 3.79
349 981 3.312697 GGTATCACTTCGGGAAGAAATGC 59.687 47.826 14.94 10.16 40.79 3.56
350 982 4.770795 AGGTATCACTTCGGGAAGAAATG 58.229 43.478 14.94 3.69 40.79 2.32
351 983 5.186198 CAAGGTATCACTTCGGGAAGAAAT 58.814 41.667 14.94 9.61 40.79 2.17
352 984 4.564821 CCAAGGTATCACTTCGGGAAGAAA 60.565 45.833 14.94 3.21 40.79 2.52
353 985 3.055385 CCAAGGTATCACTTCGGGAAGAA 60.055 47.826 14.94 3.54 40.79 2.52
354 986 2.500098 CCAAGGTATCACTTCGGGAAGA 59.500 50.000 14.94 0.00 40.79 2.87
355 987 2.906354 CCAAGGTATCACTTCGGGAAG 58.094 52.381 6.87 6.87 43.79 3.46
356 988 1.065709 GCCAAGGTATCACTTCGGGAA 60.066 52.381 0.00 0.00 0.00 3.97
357 989 0.539986 GCCAAGGTATCACTTCGGGA 59.460 55.000 0.00 0.00 0.00 5.14
358 990 0.541863 AGCCAAGGTATCACTTCGGG 59.458 55.000 0.00 0.00 0.00 5.14
359 991 2.403252 AAGCCAAGGTATCACTTCGG 57.597 50.000 0.00 0.00 0.00 4.30
360 992 2.159517 GCAAAGCCAAGGTATCACTTCG 60.160 50.000 0.00 0.00 0.00 3.79
361 993 3.494045 GCAAAGCCAAGGTATCACTTC 57.506 47.619 0.00 0.00 0.00 3.01
375 1007 3.118905 TGTGGTTTATTTGGGCAAAGC 57.881 42.857 0.00 0.00 33.32 3.51
376 1008 4.690280 GTCATGTGGTTTATTTGGGCAAAG 59.310 41.667 0.00 0.00 33.32 2.77
377 1009 4.101585 TGTCATGTGGTTTATTTGGGCAAA 59.898 37.500 0.00 0.00 34.46 3.68
378 1010 3.643320 TGTCATGTGGTTTATTTGGGCAA 59.357 39.130 0.00 0.00 0.00 4.52
379 1011 3.234353 TGTCATGTGGTTTATTTGGGCA 58.766 40.909 0.00 0.00 0.00 5.36
380 1012 3.368323 CCTGTCATGTGGTTTATTTGGGC 60.368 47.826 0.00 0.00 0.00 5.36
381 1013 3.195396 CCCTGTCATGTGGTTTATTTGGG 59.805 47.826 0.00 0.00 0.00 4.12
382 1014 3.195396 CCCCTGTCATGTGGTTTATTTGG 59.805 47.826 0.00 0.00 0.00 3.28
383 1015 3.368323 GCCCCTGTCATGTGGTTTATTTG 60.368 47.826 0.00 0.00 0.00 2.32
384 1016 2.831526 GCCCCTGTCATGTGGTTTATTT 59.168 45.455 0.00 0.00 0.00 1.40
385 1017 2.225242 TGCCCCTGTCATGTGGTTTATT 60.225 45.455 0.00 0.00 0.00 1.40
386 1018 1.357420 TGCCCCTGTCATGTGGTTTAT 59.643 47.619 0.00 0.00 0.00 1.40
387 1019 0.774276 TGCCCCTGTCATGTGGTTTA 59.226 50.000 0.00 0.00 0.00 2.01
388 1020 0.105760 TTGCCCCTGTCATGTGGTTT 60.106 50.000 0.00 0.00 0.00 3.27
389 1021 0.114954 ATTGCCCCTGTCATGTGGTT 59.885 50.000 0.00 0.00 0.00 3.67
390 1022 0.612732 CATTGCCCCTGTCATGTGGT 60.613 55.000 0.00 0.00 0.00 4.16
391 1023 0.323633 TCATTGCCCCTGTCATGTGG 60.324 55.000 0.00 0.00 0.00 4.17
392 1024 0.813184 GTCATTGCCCCTGTCATGTG 59.187 55.000 0.00 0.00 0.00 3.21
393 1025 0.323725 GGTCATTGCCCCTGTCATGT 60.324 55.000 0.00 0.00 0.00 3.21
394 1026 0.323633 TGGTCATTGCCCCTGTCATG 60.324 55.000 0.00 0.00 0.00 3.07
397 1029 0.753111 GGATGGTCATTGCCCCTGTC 60.753 60.000 0.00 0.00 0.00 3.51
411 1043 7.860613 TCGCATAATATATTATTTGCGGATGG 58.139 34.615 32.54 17.51 41.49 3.51
593 1225 1.970092 TTTCGGTCCAACGGAAACAT 58.030 45.000 8.26 0.00 40.78 2.71
694 1335 1.271325 TGCACTATGTGTGGAACCCAG 60.271 52.381 0.00 0.00 43.99 4.45
735 1376 1.299850 TGACGTGGCAAGAGTGTCG 60.300 57.895 7.60 0.00 32.32 4.35
761 1402 1.343142 CCAGGTTGGTTTGGTTTAGCC 59.657 52.381 0.00 0.00 31.35 3.93
807 1460 4.214437 GCGACAGCAGCATTAATTATCAC 58.786 43.478 0.00 0.00 44.35 3.06
822 1480 3.003482 CCCTCGTATATATAGGCGACAGC 59.997 52.174 7.44 0.00 44.18 4.40
843 1503 3.699134 GATGGGGTGACGGCCTTCC 62.699 68.421 6.80 0.37 0.00 3.46
844 1504 2.124695 GATGGGGTGACGGCCTTC 60.125 66.667 1.37 1.37 0.00 3.46
845 1505 2.933287 TGATGGGGTGACGGCCTT 60.933 61.111 0.00 0.00 0.00 4.35
890 1552 1.882989 GCAGAGCCGAACAGAGGAGT 61.883 60.000 0.00 0.00 0.00 3.85
918 1592 7.410120 TGATTTCTCAGTATCTAGTGAAGCA 57.590 36.000 0.00 0.00 35.40 3.91
933 1607 2.390599 GCGCGCACCTGATTTCTCA 61.391 57.895 29.10 0.00 0.00 3.27
934 1608 1.639298 AAGCGCGCACCTGATTTCTC 61.639 55.000 35.10 0.00 0.00 2.87
935 1609 1.237285 AAAGCGCGCACCTGATTTCT 61.237 50.000 35.10 4.83 0.00 2.52
940 1614 3.118454 GCTAAAGCGCGCACCTGA 61.118 61.111 35.10 12.37 0.00 3.86
972 1665 1.472082 AGACGATCTCACAGAGCAGTG 59.528 52.381 0.00 0.00 40.85 3.66
1036 2128 1.875963 CGCATTTCACCAGTGGGAC 59.124 57.895 15.21 0.00 38.05 4.46
1070 2162 1.954528 GACAGGTCGACAGTCGGAA 59.045 57.895 22.66 1.25 40.88 4.30
1071 2163 3.664495 GACAGGTCGACAGTCGGA 58.336 61.111 22.66 7.04 40.88 4.55
1419 4947 3.200593 GCCATGAGCTCCAGCACG 61.201 66.667 12.15 0.00 45.16 5.34
1736 5286 7.454553 AGTGGTAATGGTAATGGTAATGGTA 57.545 36.000 0.00 0.00 0.00 3.25
1737 5287 6.335781 AGTGGTAATGGTAATGGTAATGGT 57.664 37.500 0.00 0.00 0.00 3.55
1738 5288 5.468746 CGAGTGGTAATGGTAATGGTAATGG 59.531 44.000 0.00 0.00 0.00 3.16
1739 5289 5.049680 GCGAGTGGTAATGGTAATGGTAATG 60.050 44.000 0.00 0.00 0.00 1.90
1740 5290 5.061179 GCGAGTGGTAATGGTAATGGTAAT 58.939 41.667 0.00 0.00 0.00 1.89
1741 5291 4.162698 AGCGAGTGGTAATGGTAATGGTAA 59.837 41.667 0.00 0.00 0.00 2.85
1793 5349 1.064952 GCACAACACTACGCTTGGTTT 59.935 47.619 0.00 0.00 0.00 3.27
1795 5351 0.179056 AGCACAACACTACGCTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
1809 5418 1.465200 AACCATGCATGCACAGCACA 61.465 50.000 25.37 0.00 45.95 4.57
1810 5419 0.320073 AAACCATGCATGCACAGCAC 60.320 50.000 25.37 0.00 45.95 4.40
1812 5421 1.017177 CCAAACCATGCATGCACAGC 61.017 55.000 25.37 6.04 0.00 4.40
1813 5422 0.319083 ACCAAACCATGCATGCACAG 59.681 50.000 25.37 19.53 0.00 3.66
1873 5566 2.288886 ACTACGTCCTTGCCAAGAACTC 60.289 50.000 5.89 0.00 0.00 3.01
1916 5612 4.157817 CAATGAGTTGCAAGGCGC 57.842 55.556 0.00 0.00 42.89 6.53
2245 6321 1.990614 GGGAAGAGCTCGAAGGGGT 60.991 63.158 8.37 0.00 0.00 4.95
2402 6694 1.989706 TACAAAGGCCGGCTTTCTTT 58.010 45.000 25.34 22.05 0.00 2.52
2428 6720 1.407258 AGTGCTGCTGCTACTACTAGC 59.593 52.381 17.00 0.00 45.19 3.42
2443 6735 2.093711 TGCATATGTACGTGGAAGTGCT 60.094 45.455 14.87 0.00 32.87 4.40
2444 6736 2.276201 TGCATATGTACGTGGAAGTGC 58.724 47.619 4.29 4.16 0.00 4.40
2445 6737 3.242413 GCTTGCATATGTACGTGGAAGTG 60.242 47.826 20.03 0.00 43.19 3.16
2583 6884 5.333566 AAAAGGTCAGGGGAGTGAAATAA 57.666 39.130 0.00 0.00 0.00 1.40
2628 6930 1.596752 CTGCAAGTACGGTGTGGCA 60.597 57.895 0.00 0.00 0.00 4.92
2842 7233 1.760480 GAGAGAGTGGGAGAGGGGC 60.760 68.421 0.00 0.00 0.00 5.80
2956 7347 7.203218 AGAACTTTACTTGGATCAAAACAAGC 58.797 34.615 8.76 0.00 46.03 4.01
2984 7375 5.346822 CCAAACTAGCAACAAATGAGCAATC 59.653 40.000 0.00 0.00 0.00 2.67
3226 7637 9.683870 AAACACGGAATACAAACCCTAATATAA 57.316 29.630 0.00 0.00 0.00 0.98
3287 7699 6.599244 TCCCTATAAGCATTCAAAGAACACAG 59.401 38.462 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.