Multiple sequence alignment - TraesCS1D01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G400400 chr1D 100.000 3238 0 0 1 3238 466603136 466606373 0.000000e+00 5980.0
1 TraesCS1D01G400400 chr1D 89.797 1725 133 22 1086 2788 484870088 484871791 0.000000e+00 2170.0
2 TraesCS1D01G400400 chr1D 92.976 783 43 4 318 1093 484869290 484870067 0.000000e+00 1131.0
3 TraesCS1D01G400400 chr1D 93.636 330 12 4 319 639 484794563 484794892 4.860000e-133 484.0
4 TraesCS1D01G400400 chr1D 92.638 326 13 5 318 639 484737498 484737816 2.940000e-125 459.0
5 TraesCS1D01G400400 chr1D 96.629 178 6 0 3061 3238 446212444 446212621 2.440000e-76 296.0
6 TraesCS1D01G400400 chr1D 98.214 168 3 0 152 319 9218205 9218372 8.790000e-76 294.0
7 TraesCS1D01G400400 chr1D 90.254 236 3 7 2826 3060 484871783 484871999 1.140000e-74 291.0
8 TraesCS1D01G400400 chr1D 96.273 161 1 2 1 156 484869131 484869291 3.200000e-65 259.0
9 TraesCS1D01G400400 chr1D 93.168 161 5 3 1 156 484562442 484562601 6.990000e-57 231.0
10 TraesCS1D01G400400 chr1D 93.168 161 5 3 1 156 484737340 484737499 6.990000e-57 231.0
11 TraesCS1D01G400400 chr1D 76.047 430 78 17 1879 2296 484738991 484739407 1.970000e-47 200.0
12 TraesCS1D01G400400 chr1D 83.744 203 23 4 2203 2405 485020348 485020540 1.980000e-42 183.0
13 TraesCS1D01G400400 chr1D 83.495 206 18 8 318 519 484563173 484563366 9.230000e-41 178.0
14 TraesCS1D01G400400 chr1D 95.327 107 5 0 2190 2296 484566265 484566371 1.540000e-38 171.0
15 TraesCS1D01G400400 chr1B 90.672 1726 92 27 1086 2774 646775255 646776948 0.000000e+00 2231.0
16 TraesCS1D01G400400 chr1B 96.777 993 24 4 318 1303 674818807 674819798 0.000000e+00 1650.0
17 TraesCS1D01G400400 chr1B 84.719 1407 155 25 318 1676 674932714 674934108 0.000000e+00 1352.0
18 TraesCS1D01G400400 chr1B 95.582 679 19 2 2250 2927 674934693 674935361 0.000000e+00 1077.0
19 TraesCS1D01G400400 chr1B 90.262 688 47 5 419 1100 646774570 646775243 0.000000e+00 881.0
20 TraesCS1D01G400400 chr1B 92.739 606 26 6 1703 2300 674934099 674934694 0.000000e+00 859.0
21 TraesCS1D01G400400 chr1B 89.697 330 21 6 318 639 674892652 674892976 3.010000e-110 409.0
22 TraesCS1D01G400400 chr1B 95.349 215 10 0 2188 2402 674894937 674895151 3.090000e-90 342.0
23 TraesCS1D01G400400 chr1B 94.954 218 11 0 2188 2405 675220960 675220743 3.090000e-90 342.0
24 TraesCS1D01G400400 chr1B 86.018 329 13 16 318 639 675223209 675222907 4.030000e-84 322.0
25 TraesCS1D01G400400 chr1B 80.831 433 51 19 2190 2609 646687121 646687534 8.720000e-81 311.0
26 TraesCS1D01G400400 chr1B 96.894 161 0 2 1 156 674932555 674932715 6.890000e-67 265.0
27 TraesCS1D01G400400 chr1B 93.789 161 4 3 1 156 646684850 646685009 1.500000e-58 237.0
28 TraesCS1D01G400400 chr1B 92.547 161 6 3 1 156 674818649 674818808 3.250000e-55 226.0
29 TraesCS1D01G400400 chr1B 92.547 161 7 2 1 156 674892493 674892653 3.250000e-55 226.0
30 TraesCS1D01G400400 chr1B 97.541 122 3 0 318 439 646685008 646685129 3.270000e-50 209.0
31 TraesCS1D01G400400 chr1B 85.153 229 4 10 2832 3060 646776946 646777144 1.180000e-49 207.0
32 TraesCS1D01G400400 chr1B 76.116 448 69 22 2003 2424 675227574 675227139 1.970000e-47 200.0
33 TraesCS1D01G400400 chr1B 96.104 77 3 0 1268 1344 674819958 674820034 3.390000e-25 126.0
34 TraesCS1D01G400400 chr1A 89.189 1110 74 14 1694 2788 581959686 581960764 0.000000e+00 1343.0
35 TraesCS1D01G400400 chr1A 93.231 325 16 4 318 639 581878546 581878867 1.050000e-129 473.0
36 TraesCS1D01G400400 chr1A 92.035 226 7 5 421 639 581914336 581914557 1.130000e-79 307.0
37 TraesCS1D01G400400 chr1A 89.831 236 9 7 2826 3060 581960756 581960977 4.090000e-74 289.0
38 TraesCS1D01G400400 chr1A 93.789 161 4 3 1 156 581878388 581878547 1.500000e-58 237.0
39 TraesCS1D01G400400 chr1A 93.168 161 5 3 1 156 581914114 581914273 6.990000e-57 231.0
40 TraesCS1D01G400400 chr1A 80.456 307 42 12 2001 2296 581880157 581880456 5.440000e-53 219.0
41 TraesCS1D01G400400 chr1A 84.513 226 12 12 2190 2402 581916393 581916608 5.480000e-48 202.0
42 TraesCS1D01G400400 chr1A 92.308 104 3 3 318 417 581914272 581914374 3.370000e-30 143.0
43 TraesCS1D01G400400 chr7D 96.629 178 6 0 3061 3238 328191865 328192042 2.440000e-76 296.0
44 TraesCS1D01G400400 chr7D 96.591 176 6 0 3063 3238 484280778 484280953 3.160000e-75 292.0
45 TraesCS1D01G400400 chr4A 96.629 178 6 0 3061 3238 502603081 502602904 2.440000e-76 296.0
46 TraesCS1D01G400400 chr4A 96.571 175 4 2 146 320 92731817 92731989 4.090000e-74 289.0
47 TraesCS1D01G400400 chr3D 96.629 178 6 0 3061 3238 123049476 123049299 2.440000e-76 296.0
48 TraesCS1D01G400400 chr3D 96.629 178 6 0 3061 3238 486283450 486283273 2.440000e-76 296.0
49 TraesCS1D01G400400 chr3D 94.536 183 8 2 143 324 131406705 131406524 6.840000e-72 281.0
50 TraesCS1D01G400400 chr3A 96.629 178 6 0 3061 3238 449473945 449473768 2.440000e-76 296.0
51 TraesCS1D01G400400 chr2D 96.629 178 6 0 3061 3238 182389811 182389634 2.440000e-76 296.0
52 TraesCS1D01G400400 chr2D 97.661 171 4 0 153 323 593801594 593801764 8.790000e-76 294.0
53 TraesCS1D01G400400 chr2D 96.532 173 6 0 151 323 637588078 637587906 1.470000e-73 287.0
54 TraesCS1D01G400400 chr4D 96.067 178 7 0 3061 3238 472610735 472610912 1.140000e-74 291.0
55 TraesCS1D01G400400 chr4D 96.571 175 5 1 146 319 93336858 93336684 4.090000e-74 289.0
56 TraesCS1D01G400400 chr4D 92.228 193 14 1 136 328 23005211 23005402 4.120000e-69 272.0
57 TraesCS1D01G400400 chr7A 96.023 176 6 1 151 325 555661993 555661818 5.290000e-73 285.0
58 TraesCS1D01G400400 chr5D 95.480 177 8 0 147 323 5112178 5112354 1.900000e-72 283.0
59 TraesCS1D01G400400 chr6A 100.000 47 0 0 2929 2975 580281863 580281909 1.600000e-13 87.9
60 TraesCS1D01G400400 chr6A 90.566 53 3 2 2940 2992 115012833 115012783 5.800000e-08 69.4
61 TraesCS1D01G400400 chr5A 97.727 44 1 0 2929 2972 439445991 439445948 3.460000e-10 76.8
62 TraesCS1D01G400400 chr4B 94.000 50 3 0 2925 2974 377942720 377942769 3.460000e-10 76.8
63 TraesCS1D01G400400 chr6D 95.652 46 2 0 2927 2972 61144491 61144536 1.250000e-09 75.0
64 TraesCS1D01G400400 chr2B 93.750 48 3 0 2925 2972 772239507 772239460 4.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G400400 chr1D 466603136 466606373 3237 False 5980.000000 5980 100.000000 1 3238 1 chr1D.!!$F3 3237
1 TraesCS1D01G400400 chr1D 484869131 484871999 2868 False 962.750000 2170 92.325000 1 3060 4 chr1D.!!$F8 3059
2 TraesCS1D01G400400 chr1D 484737340 484739407 2067 False 296.666667 459 87.284333 1 2296 3 chr1D.!!$F7 2295
3 TraesCS1D01G400400 chr1B 646774570 646777144 2574 False 1106.333333 2231 88.695667 419 3060 3 chr1B.!!$F2 2641
4 TraesCS1D01G400400 chr1B 674932555 674935361 2806 False 888.250000 1352 92.483500 1 2927 4 chr1B.!!$F5 2926
5 TraesCS1D01G400400 chr1B 674818649 674820034 1385 False 667.333333 1650 95.142667 1 1344 3 chr1B.!!$F3 1343
6 TraesCS1D01G400400 chr1B 674892493 674895151 2658 False 325.666667 409 92.531000 1 2402 3 chr1B.!!$F4 2401
7 TraesCS1D01G400400 chr1B 675220743 675227574 6831 True 288.000000 342 85.696000 318 2424 3 chr1B.!!$R1 2106
8 TraesCS1D01G400400 chr1B 646684850 646687534 2684 False 252.333333 311 90.720333 1 2609 3 chr1B.!!$F1 2608
9 TraesCS1D01G400400 chr1A 581959686 581960977 1291 False 816.000000 1343 89.510000 1694 3060 2 chr1A.!!$F3 1366
10 TraesCS1D01G400400 chr1A 581878388 581880456 2068 False 309.666667 473 89.158667 1 2296 3 chr1A.!!$F1 2295
11 TraesCS1D01G400400 chr1A 581914114 581916608 2494 False 220.750000 307 90.506000 1 2402 4 chr1A.!!$F2 2401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 283 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.0 0.0 0.00 3.16 F
277 284 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.0 0.0 0.00 2.83 F
1159 5652 1.408969 TTGTTTCACAAGGGAAGGGC 58.591 50.000 0.0 0.0 32.34 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 5652 1.063327 CGCAGTACTCGGAGCAGAG 59.937 63.158 4.58 2.87 43.56 3.35 R
1296 6044 2.180159 TAGGTTGAGGTTGAGCGGCC 62.180 60.000 0.00 0.00 0.00 6.13 R
3103 8361 0.032403 ACCGAACACGAATCGAACCA 59.968 50.000 10.55 0.00 42.76 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 169 9.815306 TCCATCTGCTATAATATATACTCCCTC 57.185 37.037 0.00 0.00 0.00 4.30
163 170 9.030452 CCATCTGCTATAATATATACTCCCTCC 57.970 40.741 0.00 0.00 0.00 4.30
164 171 8.735315 CATCTGCTATAATATATACTCCCTCCG 58.265 40.741 0.00 0.00 0.00 4.63
165 172 7.813331 TCTGCTATAATATATACTCCCTCCGT 58.187 38.462 0.00 0.00 0.00 4.69
167 174 8.461249 TGCTATAATATATACTCCCTCCGTTC 57.539 38.462 0.00 0.00 0.00 3.95
168 175 7.504911 TGCTATAATATATACTCCCTCCGTTCC 59.495 40.741 0.00 0.00 0.00 3.62
169 176 7.724951 GCTATAATATATACTCCCTCCGTTCCT 59.275 40.741 0.00 0.00 0.00 3.36
173 180 8.912614 AATATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
178 185 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
179 186 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
180 187 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
181 188 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
183 190 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
214 221 8.836413 ACATTTCAAATGGACTACAATATACGG 58.164 33.333 14.70 0.00 0.00 4.02
215 222 9.051679 CATTTCAAATGGACTACAATATACGGA 57.948 33.333 1.73 0.00 0.00 4.69
216 223 9.793259 ATTTCAAATGGACTACAATATACGGAT 57.207 29.630 0.00 0.00 0.00 4.18
217 224 8.601845 TTCAAATGGACTACAATATACGGATG 57.398 34.615 0.00 0.00 0.00 3.51
218 225 6.649141 TCAAATGGACTACAATATACGGATGC 59.351 38.462 0.00 0.00 0.00 3.91
219 226 5.738619 ATGGACTACAATATACGGATGCA 57.261 39.130 0.00 0.00 0.00 3.96
221 228 5.478407 TGGACTACAATATACGGATGCATG 58.522 41.667 2.46 0.00 0.00 4.06
222 229 5.011635 TGGACTACAATATACGGATGCATGT 59.988 40.000 2.46 0.00 0.00 3.21
223 230 6.209788 TGGACTACAATATACGGATGCATGTA 59.790 38.462 2.46 0.83 0.00 2.29
224 231 6.752351 GGACTACAATATACGGATGCATGTAG 59.248 42.308 19.56 19.56 42.61 2.74
225 232 7.362660 GGACTACAATATACGGATGCATGTAGA 60.363 40.741 24.44 9.03 40.56 2.59
226 233 7.313646 ACTACAATATACGGATGCATGTAGAC 58.686 38.462 24.44 0.24 40.56 2.59
227 234 6.096673 ACAATATACGGATGCATGTAGACA 57.903 37.500 2.46 0.00 0.00 3.41
229 236 7.836842 ACAATATACGGATGCATGTAGACATA 58.163 34.615 2.46 0.00 34.26 2.29
230 237 8.478066 ACAATATACGGATGCATGTAGACATAT 58.522 33.333 2.46 0.00 34.26 1.78
231 238 9.317936 CAATATACGGATGCATGTAGACATATT 57.682 33.333 2.46 3.33 34.26 1.28
232 239 9.890629 AATATACGGATGCATGTAGACATATTT 57.109 29.630 2.46 0.00 34.26 1.40
235 242 7.658179 ACGGATGCATGTAGACATATTTTAG 57.342 36.000 2.46 0.00 34.26 1.85
236 243 7.441836 ACGGATGCATGTAGACATATTTTAGA 58.558 34.615 2.46 0.00 34.26 2.10
238 245 7.412346 CGGATGCATGTAGACATATTTTAGAGC 60.412 40.741 2.46 0.00 34.26 4.09
239 246 6.769608 TGCATGTAGACATATTTTAGAGCG 57.230 37.500 0.00 0.00 34.26 5.03
240 247 6.280643 TGCATGTAGACATATTTTAGAGCGT 58.719 36.000 0.00 0.00 34.26 5.07
241 248 7.430441 TGCATGTAGACATATTTTAGAGCGTA 58.570 34.615 0.00 0.00 34.26 4.42
242 249 7.595130 TGCATGTAGACATATTTTAGAGCGTAG 59.405 37.037 0.00 0.00 34.26 3.51
244 251 9.847706 CATGTAGACATATTTTAGAGCGTAGAT 57.152 33.333 0.00 0.00 34.26 1.98
247 254 9.894783 GTAGACATATTTTAGAGCGTAGATTCA 57.105 33.333 0.00 0.00 0.00 2.57
248 255 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
249 256 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
250 257 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
251 258 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
252 259 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
253 260 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
254 261 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
256 263 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
258 265 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
259 266 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
260 267 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
261 268 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
262 269 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
263 270 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
264 271 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
265 272 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
266 273 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
268 275 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
269 276 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
272 279 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
273 280 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
275 282 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
276 283 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
277 284 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
278 285 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
279 286 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
280 287 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
282 289 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
283 290 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
285 292 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
286 293 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
287 294 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
288 295 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
290 297 6.672266 AGTCACTTGTTGGAATCTCTAGAA 57.328 37.500 0.00 0.00 0.00 2.10
291 298 7.067496 AGTCACTTGTTGGAATCTCTAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
292 299 7.158021 AGTCACTTGTTGGAATCTCTAGAAAG 58.842 38.462 0.00 0.00 0.00 2.62
293 300 7.015682 AGTCACTTGTTGGAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
295 302 7.015682 TCACTTGTTGGAATCTCTAGAAAGACT 59.984 37.037 0.00 0.00 0.00 3.24
297 304 8.871125 ACTTGTTGGAATCTCTAGAAAGACTTA 58.129 33.333 0.00 0.00 0.00 2.24
298 305 9.883142 CTTGTTGGAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
310 317 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
311 318 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
312 319 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
313 320 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
314 321 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
315 322 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
316 323 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
440 4491 5.400066 ACCAACTGTTTTGTTTGTTAGCT 57.600 34.783 0.00 0.00 0.00 3.32
443 4494 5.516339 CCAACTGTTTTGTTTGTTAGCTCAG 59.484 40.000 0.00 0.00 0.00 3.35
519 4579 7.405292 CCATTATATTTATCTCTCCCCTTGCA 58.595 38.462 0.00 0.00 0.00 4.08
893 5128 6.313411 CCTTCTTCAGAAATTGTCTAGCTGAG 59.687 42.308 0.00 0.00 36.99 3.35
1159 5652 1.408969 TTGTTTCACAAGGGAAGGGC 58.591 50.000 0.00 0.00 32.34 5.19
1373 6172 3.349006 GTGCCACTGTGCCTCGTG 61.349 66.667 1.29 0.00 0.00 4.35
1387 6186 0.594796 CTCGTGCAAGTGCCAAAACC 60.595 55.000 0.00 0.00 41.18 3.27
1388 6187 1.140589 CGTGCAAGTGCCAAAACCA 59.859 52.632 0.00 0.00 41.18 3.67
1837 6832 1.548269 CCGTTGGGTGTAAATGCCAAT 59.452 47.619 0.00 0.00 0.00 3.16
2212 7378 6.382859 TCAGTGATAAGCAACTAATCCTGGTA 59.617 38.462 0.00 0.00 0.00 3.25
2244 7410 1.937191 TGTGCAGGGATGACAGTAGA 58.063 50.000 0.00 0.00 0.00 2.59
2410 7647 2.283617 CGAAAACTCCATGATCTGCGAG 59.716 50.000 0.00 0.00 0.00 5.03
2494 7745 7.986085 ACATACTCATGTAGGAATATTTGCC 57.014 36.000 0.00 0.00 43.74 4.52
2495 7746 6.650807 ACATACTCATGTAGGAATATTTGCCG 59.349 38.462 0.00 0.00 43.74 5.69
2496 7747 5.036117 ACTCATGTAGGAATATTTGCCGT 57.964 39.130 0.00 0.00 0.00 5.68
2497 7748 5.057149 ACTCATGTAGGAATATTTGCCGTC 58.943 41.667 0.00 0.00 0.00 4.79
2498 7749 5.029807 TCATGTAGGAATATTTGCCGTCA 57.970 39.130 0.00 0.00 0.00 4.35
2499 7750 5.620206 TCATGTAGGAATATTTGCCGTCAT 58.380 37.500 0.00 0.00 0.00 3.06
2564 7815 6.201806 GGTTCAGCTACTTCTTATGCATACAG 59.798 42.308 5.74 7.63 0.00 2.74
2927 8179 2.992124 TCGATGCCGGGATTCTTTTA 57.008 45.000 10.83 0.00 36.24 1.52
2931 8183 4.039973 TCGATGCCGGGATTCTTTTATACT 59.960 41.667 10.83 0.00 36.24 2.12
2932 8184 4.389077 CGATGCCGGGATTCTTTTATACTC 59.611 45.833 10.83 0.00 0.00 2.59
2933 8185 4.081322 TGCCGGGATTCTTTTATACTCC 57.919 45.455 2.18 0.00 0.00 3.85
2934 8186 3.181448 TGCCGGGATTCTTTTATACTCCC 60.181 47.826 2.18 0.00 41.86 4.30
2935 8187 3.072622 GCCGGGATTCTTTTATACTCCCT 59.927 47.826 2.18 0.00 42.90 4.20
2936 8188 4.803253 GCCGGGATTCTTTTATACTCCCTC 60.803 50.000 2.18 0.00 42.90 4.30
2937 8189 4.593634 CCGGGATTCTTTTATACTCCCTCT 59.406 45.833 0.00 0.00 42.90 3.69
3065 8323 5.818136 TTTTGTCCACTGAGAAACTTGAG 57.182 39.130 0.00 0.00 33.88 3.02
3066 8324 3.475566 TGTCCACTGAGAAACTTGAGG 57.524 47.619 0.00 0.00 0.00 3.86
3067 8325 2.104792 TGTCCACTGAGAAACTTGAGGG 59.895 50.000 0.00 0.00 0.00 4.30
3068 8326 2.104963 GTCCACTGAGAAACTTGAGGGT 59.895 50.000 0.00 0.00 0.00 4.34
3069 8327 3.323979 GTCCACTGAGAAACTTGAGGGTA 59.676 47.826 0.00 0.00 0.00 3.69
3070 8328 3.323979 TCCACTGAGAAACTTGAGGGTAC 59.676 47.826 0.00 0.00 0.00 3.34
3071 8329 3.071023 CCACTGAGAAACTTGAGGGTACA 59.929 47.826 0.00 0.00 0.00 2.90
3072 8330 4.058817 CACTGAGAAACTTGAGGGTACAC 58.941 47.826 0.00 0.00 0.00 2.90
3073 8331 3.243771 ACTGAGAAACTTGAGGGTACACG 60.244 47.826 0.00 0.00 0.00 4.49
3074 8332 2.036733 TGAGAAACTTGAGGGTACACGG 59.963 50.000 0.00 0.00 0.00 4.94
3075 8333 2.298163 GAGAAACTTGAGGGTACACGGA 59.702 50.000 0.00 0.00 0.00 4.69
3076 8334 2.701951 AGAAACTTGAGGGTACACGGAA 59.298 45.455 0.00 0.00 0.00 4.30
3077 8335 3.326880 AGAAACTTGAGGGTACACGGAAT 59.673 43.478 0.00 0.00 0.00 3.01
3078 8336 3.782656 AACTTGAGGGTACACGGAATT 57.217 42.857 0.00 0.00 0.00 2.17
3079 8337 3.782656 ACTTGAGGGTACACGGAATTT 57.217 42.857 0.00 0.00 0.00 1.82
3080 8338 4.094830 ACTTGAGGGTACACGGAATTTT 57.905 40.909 0.00 0.00 0.00 1.82
3081 8339 4.070009 ACTTGAGGGTACACGGAATTTTC 58.930 43.478 0.00 0.00 0.00 2.29
3082 8340 3.773418 TGAGGGTACACGGAATTTTCA 57.227 42.857 0.00 0.00 0.00 2.69
3083 8341 4.295141 TGAGGGTACACGGAATTTTCAT 57.705 40.909 0.00 0.00 0.00 2.57
3084 8342 4.258543 TGAGGGTACACGGAATTTTCATC 58.741 43.478 0.00 0.00 0.00 2.92
3085 8343 4.019681 TGAGGGTACACGGAATTTTCATCT 60.020 41.667 0.00 0.00 0.00 2.90
3086 8344 5.188163 TGAGGGTACACGGAATTTTCATCTA 59.812 40.000 0.00 0.00 0.00 1.98
3087 8345 5.671493 AGGGTACACGGAATTTTCATCTAG 58.329 41.667 0.00 0.00 0.00 2.43
3088 8346 5.189145 AGGGTACACGGAATTTTCATCTAGT 59.811 40.000 0.00 0.00 0.00 2.57
3089 8347 5.522824 GGGTACACGGAATTTTCATCTAGTC 59.477 44.000 0.00 0.00 0.00 2.59
3090 8348 6.103997 GGTACACGGAATTTTCATCTAGTCA 58.896 40.000 0.00 0.00 0.00 3.41
3091 8349 6.035758 GGTACACGGAATTTTCATCTAGTCAC 59.964 42.308 0.00 0.00 0.00 3.67
3092 8350 5.794894 ACACGGAATTTTCATCTAGTCACT 58.205 37.500 0.00 0.00 0.00 3.41
3093 8351 6.231211 ACACGGAATTTTCATCTAGTCACTT 58.769 36.000 0.00 0.00 0.00 3.16
3094 8352 6.710744 ACACGGAATTTTCATCTAGTCACTTT 59.289 34.615 0.00 0.00 0.00 2.66
3095 8353 7.095187 ACACGGAATTTTCATCTAGTCACTTTC 60.095 37.037 0.00 0.00 0.00 2.62
3096 8354 6.934645 ACGGAATTTTCATCTAGTCACTTTCA 59.065 34.615 0.00 0.00 0.00 2.69
3097 8355 7.095187 ACGGAATTTTCATCTAGTCACTTTCAC 60.095 37.037 0.00 0.00 0.00 3.18
3098 8356 7.530863 GGAATTTTCATCTAGTCACTTTCACC 58.469 38.462 0.00 0.00 0.00 4.02
3099 8357 6.727824 ATTTTCATCTAGTCACTTTCACCG 57.272 37.500 0.00 0.00 0.00 4.94
3100 8358 4.866508 TTCATCTAGTCACTTTCACCGT 57.133 40.909 0.00 0.00 0.00 4.83
3101 8359 4.174411 TCATCTAGTCACTTTCACCGTG 57.826 45.455 0.00 0.00 0.00 4.94
3102 8360 3.572682 TCATCTAGTCACTTTCACCGTGT 59.427 43.478 0.00 0.00 34.14 4.49
3103 8361 4.038763 TCATCTAGTCACTTTCACCGTGTT 59.961 41.667 0.00 0.00 34.14 3.32
3104 8362 3.713288 TCTAGTCACTTTCACCGTGTTG 58.287 45.455 0.00 0.00 34.14 3.33
3105 8363 1.663695 AGTCACTTTCACCGTGTTGG 58.336 50.000 0.00 0.00 46.41 3.77
3115 8373 2.524300 CCGTGTTGGTTCGATTCGT 58.476 52.632 5.89 0.00 0.00 3.85
3116 8374 0.162933 CCGTGTTGGTTCGATTCGTG 59.837 55.000 5.89 0.00 0.00 4.35
3117 8375 0.856641 CGTGTTGGTTCGATTCGTGT 59.143 50.000 5.89 0.00 0.00 4.49
3118 8376 1.259507 CGTGTTGGTTCGATTCGTGTT 59.740 47.619 5.89 0.00 0.00 3.32
3119 8377 2.658224 CGTGTTGGTTCGATTCGTGTTC 60.658 50.000 5.89 0.00 0.00 3.18
3120 8378 1.523515 TGTTGGTTCGATTCGTGTTCG 59.476 47.619 5.89 0.00 37.94 3.95
3121 8379 1.136446 GTTGGTTCGATTCGTGTTCGG 60.136 52.381 5.89 0.00 37.22 4.30
3122 8380 0.032403 TGGTTCGATTCGTGTTCGGT 59.968 50.000 5.89 0.00 37.22 4.69
3123 8381 1.269174 TGGTTCGATTCGTGTTCGGTA 59.731 47.619 5.89 0.00 37.22 4.02
3124 8382 1.650645 GGTTCGATTCGTGTTCGGTAC 59.349 52.381 5.89 0.00 37.22 3.34
3125 8383 2.589014 GTTCGATTCGTGTTCGGTACT 58.411 47.619 5.89 0.00 37.22 2.73
3126 8384 2.982470 GTTCGATTCGTGTTCGGTACTT 59.018 45.455 5.89 0.00 37.22 2.24
3127 8385 3.287312 TCGATTCGTGTTCGGTACTTT 57.713 42.857 5.89 0.00 37.22 2.66
3128 8386 2.981805 TCGATTCGTGTTCGGTACTTTG 59.018 45.455 5.89 0.00 37.22 2.77
3129 8387 2.981805 CGATTCGTGTTCGGTACTTTGA 59.018 45.455 0.00 0.00 37.69 2.69
3130 8388 3.611113 CGATTCGTGTTCGGTACTTTGAT 59.389 43.478 0.00 0.00 37.69 2.57
3131 8389 4.794762 CGATTCGTGTTCGGTACTTTGATA 59.205 41.667 0.00 0.00 37.69 2.15
3132 8390 5.286797 CGATTCGTGTTCGGTACTTTGATAA 59.713 40.000 0.00 0.00 37.69 1.75
3133 8391 6.020121 CGATTCGTGTTCGGTACTTTGATAAT 60.020 38.462 0.00 0.00 37.69 1.28
3134 8392 7.463648 CGATTCGTGTTCGGTACTTTGATAATT 60.464 37.037 0.00 0.00 37.69 1.40
3135 8393 7.424227 TTCGTGTTCGGTACTTTGATAATTT 57.576 32.000 0.00 0.00 37.69 1.82
3136 8394 6.823531 TCGTGTTCGGTACTTTGATAATTTG 58.176 36.000 0.00 0.00 37.69 2.32
3137 8395 6.645827 TCGTGTTCGGTACTTTGATAATTTGA 59.354 34.615 0.00 0.00 37.69 2.69
3138 8396 7.332430 TCGTGTTCGGTACTTTGATAATTTGAT 59.668 33.333 0.00 0.00 37.69 2.57
3139 8397 8.597227 CGTGTTCGGTACTTTGATAATTTGATA 58.403 33.333 0.00 0.00 0.00 2.15
3144 8402 9.051679 TCGGTACTTTGATAATTTGATATGTGG 57.948 33.333 0.00 0.00 0.00 4.17
3145 8403 8.289618 CGGTACTTTGATAATTTGATATGTGGG 58.710 37.037 0.00 0.00 0.00 4.61
3146 8404 9.131791 GGTACTTTGATAATTTGATATGTGGGT 57.868 33.333 0.00 0.00 0.00 4.51
3147 8405 9.950680 GTACTTTGATAATTTGATATGTGGGTG 57.049 33.333 0.00 0.00 0.00 4.61
3148 8406 8.010733 ACTTTGATAATTTGATATGTGGGTGG 57.989 34.615 0.00 0.00 0.00 4.61
3149 8407 7.838696 ACTTTGATAATTTGATATGTGGGTGGA 59.161 33.333 0.00 0.00 0.00 4.02
3150 8408 7.581213 TTGATAATTTGATATGTGGGTGGAC 57.419 36.000 0.00 0.00 0.00 4.02
3151 8409 6.910191 TGATAATTTGATATGTGGGTGGACT 58.090 36.000 0.00 0.00 0.00 3.85
3152 8410 6.772233 TGATAATTTGATATGTGGGTGGACTG 59.228 38.462 0.00 0.00 0.00 3.51
3153 8411 3.364460 TTTGATATGTGGGTGGACTGG 57.636 47.619 0.00 0.00 0.00 4.00
3154 8412 1.965414 TGATATGTGGGTGGACTGGT 58.035 50.000 0.00 0.00 0.00 4.00
3155 8413 1.559219 TGATATGTGGGTGGACTGGTG 59.441 52.381 0.00 0.00 0.00 4.17
3156 8414 0.255890 ATATGTGGGTGGACTGGTGC 59.744 55.000 0.00 0.00 0.00 5.01
3157 8415 0.840288 TATGTGGGTGGACTGGTGCT 60.840 55.000 0.00 0.00 0.00 4.40
3158 8416 1.719063 ATGTGGGTGGACTGGTGCTT 61.719 55.000 0.00 0.00 0.00 3.91
3159 8417 1.057275 TGTGGGTGGACTGGTGCTTA 61.057 55.000 0.00 0.00 0.00 3.09
3160 8418 0.321653 GTGGGTGGACTGGTGCTTAG 60.322 60.000 0.00 0.00 0.00 2.18
3161 8419 1.299976 GGGTGGACTGGTGCTTAGG 59.700 63.158 0.00 0.00 0.00 2.69
3162 8420 1.489560 GGGTGGACTGGTGCTTAGGT 61.490 60.000 0.00 0.00 0.00 3.08
3163 8421 0.321653 GGTGGACTGGTGCTTAGGTG 60.322 60.000 0.00 0.00 0.00 4.00
3164 8422 0.396811 GTGGACTGGTGCTTAGGTGT 59.603 55.000 0.00 0.00 0.00 4.16
3165 8423 1.136828 TGGACTGGTGCTTAGGTGTT 58.863 50.000 0.00 0.00 0.00 3.32
3166 8424 1.202758 TGGACTGGTGCTTAGGTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
3167 8425 1.202770 GGACTGGTGCTTAGGTGTTGT 60.203 52.381 0.00 0.00 0.00 3.32
3168 8426 2.572290 GACTGGTGCTTAGGTGTTGTT 58.428 47.619 0.00 0.00 0.00 2.83
3169 8427 2.548480 GACTGGTGCTTAGGTGTTGTTC 59.452 50.000 0.00 0.00 0.00 3.18
3170 8428 2.172717 ACTGGTGCTTAGGTGTTGTTCT 59.827 45.455 0.00 0.00 0.00 3.01
3171 8429 3.214328 CTGGTGCTTAGGTGTTGTTCTT 58.786 45.455 0.00 0.00 0.00 2.52
3172 8430 4.141574 ACTGGTGCTTAGGTGTTGTTCTTA 60.142 41.667 0.00 0.00 0.00 2.10
3173 8431 4.131596 TGGTGCTTAGGTGTTGTTCTTAC 58.868 43.478 0.00 0.00 0.00 2.34
3174 8432 4.141574 TGGTGCTTAGGTGTTGTTCTTACT 60.142 41.667 0.00 0.00 0.00 2.24
3175 8433 4.820173 GGTGCTTAGGTGTTGTTCTTACTT 59.180 41.667 0.00 0.00 0.00 2.24
3176 8434 5.277828 GGTGCTTAGGTGTTGTTCTTACTTG 60.278 44.000 0.00 0.00 0.00 3.16
3177 8435 5.526111 GTGCTTAGGTGTTGTTCTTACTTGA 59.474 40.000 0.00 0.00 0.00 3.02
3178 8436 6.037830 GTGCTTAGGTGTTGTTCTTACTTGAA 59.962 38.462 0.00 0.00 0.00 2.69
3179 8437 6.037830 TGCTTAGGTGTTGTTCTTACTTGAAC 59.962 38.462 0.00 0.00 44.60 3.18
3190 8448 7.187244 GTTCTTACTTGAACAAACCTCCTAC 57.813 40.000 0.00 0.00 44.00 3.18
3191 8449 6.742559 TCTTACTTGAACAAACCTCCTACT 57.257 37.500 0.00 0.00 0.00 2.57
3192 8450 7.133133 TCTTACTTGAACAAACCTCCTACTT 57.867 36.000 0.00 0.00 0.00 2.24
3193 8451 8.253867 TCTTACTTGAACAAACCTCCTACTTA 57.746 34.615 0.00 0.00 0.00 2.24
3194 8452 8.877195 TCTTACTTGAACAAACCTCCTACTTAT 58.123 33.333 0.00 0.00 0.00 1.73
3195 8453 8.842358 TTACTTGAACAAACCTCCTACTTATG 57.158 34.615 0.00 0.00 0.00 1.90
3196 8454 6.238648 ACTTGAACAAACCTCCTACTTATGG 58.761 40.000 0.00 0.00 0.00 2.74
3197 8455 5.836024 TGAACAAACCTCCTACTTATGGT 57.164 39.130 0.00 0.00 0.00 3.55
3198 8456 6.195600 TGAACAAACCTCCTACTTATGGTT 57.804 37.500 0.00 0.00 43.73 3.67
3199 8457 7.319052 TGAACAAACCTCCTACTTATGGTTA 57.681 36.000 0.00 0.00 41.36 2.85
3200 8458 7.747690 TGAACAAACCTCCTACTTATGGTTAA 58.252 34.615 0.00 0.00 41.36 2.01
3201 8459 7.662669 TGAACAAACCTCCTACTTATGGTTAAC 59.337 37.037 0.00 0.00 41.36 2.01
3202 8460 6.479006 ACAAACCTCCTACTTATGGTTAACC 58.521 40.000 18.27 18.27 41.36 2.85
3203 8461 5.705397 AACCTCCTACTTATGGTTAACCC 57.295 43.478 21.97 4.73 40.55 4.11
3204 8462 4.969133 ACCTCCTACTTATGGTTAACCCT 58.031 43.478 21.97 14.70 34.29 4.34
3205 8463 4.967442 ACCTCCTACTTATGGTTAACCCTC 59.033 45.833 21.97 0.00 34.29 4.30
3206 8464 4.347292 CCTCCTACTTATGGTTAACCCTCC 59.653 50.000 21.97 0.00 34.29 4.30
3207 8465 4.301205 TCCTACTTATGGTTAACCCTCCC 58.699 47.826 21.97 0.00 34.29 4.30
3208 8466 3.070590 CCTACTTATGGTTAACCCTCCCG 59.929 52.174 21.97 8.99 34.29 5.14
3209 8467 1.211212 ACTTATGGTTAACCCTCCCGC 59.789 52.381 21.97 0.00 34.29 6.13
3210 8468 1.210967 CTTATGGTTAACCCTCCCGCA 59.789 52.381 21.97 1.35 34.29 5.69
3211 8469 1.287217 TATGGTTAACCCTCCCGCAA 58.713 50.000 21.97 0.56 34.29 4.85
3212 8470 0.034477 ATGGTTAACCCTCCCGCAAG 60.034 55.000 21.97 0.00 34.29 4.01
3213 8471 2.044555 GGTTAACCCTCCCGCAAGC 61.045 63.158 14.16 0.00 0.00 4.01
3214 8472 1.302993 GTTAACCCTCCCGCAAGCA 60.303 57.895 0.00 0.00 0.00 3.91
3215 8473 0.679960 GTTAACCCTCCCGCAAGCAT 60.680 55.000 0.00 0.00 0.00 3.79
3216 8474 0.393808 TTAACCCTCCCGCAAGCATC 60.394 55.000 0.00 0.00 0.00 3.91
3217 8475 2.265467 TAACCCTCCCGCAAGCATCC 62.265 60.000 0.00 0.00 0.00 3.51
3221 8479 4.713735 TCCCGCAAGCATCCGCAA 62.714 61.111 0.00 0.00 42.27 4.85
3222 8480 4.481112 CCCGCAAGCATCCGCAAC 62.481 66.667 0.00 0.00 42.27 4.17
3223 8481 3.434319 CCGCAAGCATCCGCAACT 61.434 61.111 0.00 0.00 42.27 3.16
3224 8482 2.106074 CCGCAAGCATCCGCAACTA 61.106 57.895 0.00 0.00 42.27 2.24
3225 8483 1.060937 CGCAAGCATCCGCAACTAC 59.939 57.895 0.00 0.00 42.27 2.73
3226 8484 1.060937 GCAAGCATCCGCAACTACG 59.939 57.895 0.00 0.00 42.27 3.51
3227 8485 1.358725 GCAAGCATCCGCAACTACGA 61.359 55.000 0.00 0.00 42.27 3.43
3228 8486 0.647410 CAAGCATCCGCAACTACGAG 59.353 55.000 0.00 0.00 42.27 4.18
3229 8487 0.530744 AAGCATCCGCAACTACGAGA 59.469 50.000 0.00 0.00 42.27 4.04
3230 8488 0.530744 AGCATCCGCAACTACGAGAA 59.469 50.000 0.00 0.00 42.27 2.87
3231 8489 1.067142 AGCATCCGCAACTACGAGAAA 60.067 47.619 0.00 0.00 42.27 2.52
3232 8490 1.730064 GCATCCGCAACTACGAGAAAA 59.270 47.619 0.00 0.00 38.36 2.29
3233 8491 2.222819 GCATCCGCAACTACGAGAAAAG 60.223 50.000 0.00 0.00 38.36 2.27
3234 8492 2.806608 TCCGCAACTACGAGAAAAGT 57.193 45.000 0.00 0.00 34.06 2.66
3235 8493 3.921119 TCCGCAACTACGAGAAAAGTA 57.079 42.857 0.00 0.00 34.06 2.24
3236 8494 4.445452 TCCGCAACTACGAGAAAAGTAT 57.555 40.909 0.00 0.00 34.06 2.12
3237 8495 4.813027 TCCGCAACTACGAGAAAAGTATT 58.187 39.130 0.00 0.00 34.06 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 163 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
157 164 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
158 165 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
159 166 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
176 183 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
187 194 9.864034 CGTATATTGTAGTCCATTTGAAATGTC 57.136 33.333 15.93 9.10 0.00 3.06
188 195 8.836413 CCGTATATTGTAGTCCATTTGAAATGT 58.164 33.333 15.93 1.43 0.00 2.71
191 198 9.051679 CATCCGTATATTGTAGTCCATTTGAAA 57.948 33.333 0.00 0.00 0.00 2.69
192 199 7.172532 GCATCCGTATATTGTAGTCCATTTGAA 59.827 37.037 0.00 0.00 0.00 2.69
193 200 6.649141 GCATCCGTATATTGTAGTCCATTTGA 59.351 38.462 0.00 0.00 0.00 2.69
194 201 6.426633 TGCATCCGTATATTGTAGTCCATTTG 59.573 38.462 0.00 0.00 0.00 2.32
195 202 6.530120 TGCATCCGTATATTGTAGTCCATTT 58.470 36.000 0.00 0.00 0.00 2.32
198 205 5.011635 ACATGCATCCGTATATTGTAGTCCA 59.988 40.000 0.00 0.00 0.00 4.02
200 207 7.485277 GTCTACATGCATCCGTATATTGTAGTC 59.515 40.741 14.62 8.30 0.00 2.59
205 212 8.877808 ATATGTCTACATGCATCCGTATATTG 57.122 34.615 0.00 0.00 37.15 1.90
206 213 9.890629 AAATATGTCTACATGCATCCGTATATT 57.109 29.630 0.00 1.00 37.15 1.28
207 214 9.890629 AAAATATGTCTACATGCATCCGTATAT 57.109 29.630 0.00 0.00 37.15 0.86
209 216 9.371136 CTAAAATATGTCTACATGCATCCGTAT 57.629 33.333 0.00 0.00 37.15 3.06
210 217 8.581578 TCTAAAATATGTCTACATGCATCCGTA 58.418 33.333 0.00 0.00 37.15 4.02
212 219 7.412346 GCTCTAAAATATGTCTACATGCATCCG 60.412 40.741 0.00 0.00 37.15 4.18
214 221 7.116948 ACGCTCTAAAATATGTCTACATGCATC 59.883 37.037 0.00 0.00 37.15 3.91
215 222 6.931281 ACGCTCTAAAATATGTCTACATGCAT 59.069 34.615 5.85 0.00 37.15 3.96
216 223 6.280643 ACGCTCTAAAATATGTCTACATGCA 58.719 36.000 5.85 0.00 37.15 3.96
217 224 6.771188 ACGCTCTAAAATATGTCTACATGC 57.229 37.500 5.85 0.00 37.15 4.06
218 225 9.847706 ATCTACGCTCTAAAATATGTCTACATG 57.152 33.333 5.85 0.00 37.15 3.21
221 228 9.894783 TGAATCTACGCTCTAAAATATGTCTAC 57.105 33.333 0.00 0.00 0.00 2.59
222 229 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
223 230 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
224 231 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
225 232 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
226 233 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
227 234 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
229 236 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
230 237 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
231 238 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
232 239 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
234 241 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
235 242 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
236 243 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
238 245 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
239 246 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
240 247 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
241 248 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
242 249 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
244 251 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
245 252 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
247 254 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
248 255 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
249 256 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
250 257 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
251 258 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
252 259 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
253 260 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
254 261 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
256 263 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
258 265 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
259 266 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
260 267 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
261 268 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
262 269 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
263 270 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
264 271 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
265 272 7.159322 TCTAGAGATTCCAACAAGTGACTAC 57.841 40.000 0.00 0.00 0.00 2.73
266 273 7.776618 TTCTAGAGATTCCAACAAGTGACTA 57.223 36.000 0.00 0.00 0.00 2.59
268 275 7.117092 GTCTTTCTAGAGATTCCAACAAGTGAC 59.883 40.741 0.00 0.00 0.00 3.67
269 276 7.015682 AGTCTTTCTAGAGATTCCAACAAGTGA 59.984 37.037 0.00 0.00 0.00 3.41
272 279 9.883142 ATAAGTCTTTCTAGAGATTCCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
283 290 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
285 292 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
286 293 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
287 294 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
288 295 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
290 297 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
291 298 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
292 299 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
293 300 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
295 302 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
297 304 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
298 305 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
300 307 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
301 308 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
302 309 0.115745 AACTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
303 310 1.273759 AAACTACTCCCTCCGTTCCC 58.726 55.000 0.00 0.00 0.00 3.97
304 311 3.095332 AGTAAACTACTCCCTCCGTTCC 58.905 50.000 0.00 0.00 32.47 3.62
305 312 4.492611 CAAGTAAACTACTCCCTCCGTTC 58.507 47.826 0.00 0.00 38.26 3.95
306 313 3.260128 CCAAGTAAACTACTCCCTCCGTT 59.740 47.826 0.00 0.00 38.26 4.44
307 314 2.830321 CCAAGTAAACTACTCCCTCCGT 59.170 50.000 0.00 0.00 38.26 4.69
308 315 2.167900 CCCAAGTAAACTACTCCCTCCG 59.832 54.545 0.00 0.00 38.26 4.63
310 317 4.531339 AGAACCCAAGTAAACTACTCCCTC 59.469 45.833 0.00 0.00 38.26 4.30
311 318 4.500452 AGAACCCAAGTAAACTACTCCCT 58.500 43.478 0.00 0.00 38.26 4.20
312 319 4.904895 AGAACCCAAGTAAACTACTCCC 57.095 45.455 0.00 0.00 38.26 4.30
313 320 7.002250 ACTAAGAACCCAAGTAAACTACTCC 57.998 40.000 0.00 0.00 38.26 3.85
519 4579 5.645497 GGAAGCAACTGAATATTGACACTCT 59.355 40.000 0.00 0.00 0.00 3.24
893 5128 6.208644 TCAAACTTGCTCAGAAAACTTATGC 58.791 36.000 0.00 0.00 0.00 3.14
1159 5652 1.063327 CGCAGTACTCGGAGCAGAG 59.937 63.158 4.58 2.87 43.56 3.35
1296 6044 2.180159 TAGGTTGAGGTTGAGCGGCC 62.180 60.000 0.00 0.00 0.00 6.13
1373 6172 2.676076 CATACTGGTTTTGGCACTTGC 58.324 47.619 0.00 0.00 41.14 4.01
1387 6186 7.543947 TGACATAATTCAACTCTGCATACTG 57.456 36.000 0.00 0.00 0.00 2.74
2232 7398 5.590530 ATGTCTCAAGTCTACTGTCATCC 57.409 43.478 0.00 0.00 0.00 3.51
2244 7410 3.771479 TCATGCTCTGGTATGTCTCAAGT 59.229 43.478 0.00 0.00 36.98 3.16
2494 7745 2.579787 GGACGCCGACTGATGACG 60.580 66.667 0.00 0.00 0.00 4.35
2495 7746 0.384309 TATGGACGCCGACTGATGAC 59.616 55.000 0.00 0.00 0.00 3.06
2496 7747 0.384309 GTATGGACGCCGACTGATGA 59.616 55.000 0.00 0.00 0.00 2.92
2497 7748 0.102300 TGTATGGACGCCGACTGATG 59.898 55.000 0.00 0.00 0.00 3.07
2498 7749 1.040646 ATGTATGGACGCCGACTGAT 58.959 50.000 0.00 0.00 0.00 2.90
2499 7750 1.335810 GTATGTATGGACGCCGACTGA 59.664 52.381 0.00 0.00 0.00 3.41
2564 7815 8.986477 AAAAATCATTTGCAGGAACTATGTAC 57.014 30.769 0.00 0.00 36.02 2.90
2927 8179 3.633418 AGAGCGTTTACAGAGGGAGTAT 58.367 45.455 0.00 0.00 0.00 2.12
2931 8183 6.726490 AATATAAGAGCGTTTACAGAGGGA 57.274 37.500 0.00 0.00 0.00 4.20
2932 8184 7.659186 ACTAATATAAGAGCGTTTACAGAGGG 58.341 38.462 0.00 0.00 0.00 4.30
2933 8185 9.530633 AAACTAATATAAGAGCGTTTACAGAGG 57.469 33.333 0.00 0.00 0.00 3.69
3060 8318 4.069304 TGAAAATTCCGTGTACCCTCAAG 58.931 43.478 0.00 0.00 0.00 3.02
3061 8319 4.088056 TGAAAATTCCGTGTACCCTCAA 57.912 40.909 0.00 0.00 0.00 3.02
3062 8320 3.773418 TGAAAATTCCGTGTACCCTCA 57.227 42.857 0.00 0.00 0.00 3.86
3063 8321 4.514401 AGATGAAAATTCCGTGTACCCTC 58.486 43.478 0.00 0.00 0.00 4.30
3064 8322 4.569719 AGATGAAAATTCCGTGTACCCT 57.430 40.909 0.00 0.00 0.00 4.34
3065 8323 5.425630 ACTAGATGAAAATTCCGTGTACCC 58.574 41.667 0.00 0.00 0.00 3.69
3066 8324 6.035758 GTGACTAGATGAAAATTCCGTGTACC 59.964 42.308 0.00 0.00 0.00 3.34
3067 8325 6.812160 AGTGACTAGATGAAAATTCCGTGTAC 59.188 38.462 0.00 0.00 0.00 2.90
3068 8326 6.931838 AGTGACTAGATGAAAATTCCGTGTA 58.068 36.000 0.00 0.00 0.00 2.90
3069 8327 5.794894 AGTGACTAGATGAAAATTCCGTGT 58.205 37.500 0.00 0.00 0.00 4.49
3070 8328 6.727824 AAGTGACTAGATGAAAATTCCGTG 57.272 37.500 0.00 0.00 0.00 4.94
3071 8329 6.934645 TGAAAGTGACTAGATGAAAATTCCGT 59.065 34.615 0.00 0.00 0.00 4.69
3072 8330 7.237173 GTGAAAGTGACTAGATGAAAATTCCG 58.763 38.462 0.00 0.00 0.00 4.30
3073 8331 7.530863 GGTGAAAGTGACTAGATGAAAATTCC 58.469 38.462 0.00 0.00 0.00 3.01
3074 8332 7.095187 ACGGTGAAAGTGACTAGATGAAAATTC 60.095 37.037 0.00 0.00 0.00 2.17
3075 8333 6.710744 ACGGTGAAAGTGACTAGATGAAAATT 59.289 34.615 0.00 0.00 0.00 1.82
3076 8334 6.147821 CACGGTGAAAGTGACTAGATGAAAAT 59.852 38.462 0.74 0.00 41.83 1.82
3077 8335 5.465390 CACGGTGAAAGTGACTAGATGAAAA 59.535 40.000 0.74 0.00 41.83 2.29
3078 8336 4.988540 CACGGTGAAAGTGACTAGATGAAA 59.011 41.667 0.74 0.00 41.83 2.69
3079 8337 4.038763 ACACGGTGAAAGTGACTAGATGAA 59.961 41.667 16.29 0.00 41.83 2.57
3080 8338 3.572682 ACACGGTGAAAGTGACTAGATGA 59.427 43.478 16.29 0.00 41.83 2.92
3081 8339 3.914312 ACACGGTGAAAGTGACTAGATG 58.086 45.455 16.29 0.00 41.83 2.90
3082 8340 4.307432 CAACACGGTGAAAGTGACTAGAT 58.693 43.478 16.29 0.00 41.83 1.98
3083 8341 3.491964 CCAACACGGTGAAAGTGACTAGA 60.492 47.826 16.29 0.00 41.83 2.43
3084 8342 2.800544 CCAACACGGTGAAAGTGACTAG 59.199 50.000 16.29 0.00 41.83 2.57
3085 8343 2.828877 CCAACACGGTGAAAGTGACTA 58.171 47.619 16.29 0.00 41.83 2.59
3086 8344 1.663695 CCAACACGGTGAAAGTGACT 58.336 50.000 16.29 0.00 41.83 3.41
3097 8355 0.162933 CACGAATCGAACCAACACGG 59.837 55.000 10.55 0.00 42.50 4.94
3098 8356 0.856641 ACACGAATCGAACCAACACG 59.143 50.000 10.55 0.00 0.00 4.49
3099 8357 2.658224 CGAACACGAATCGAACCAACAC 60.658 50.000 10.55 0.00 42.76 3.32
3100 8358 1.523515 CGAACACGAATCGAACCAACA 59.476 47.619 10.55 0.00 42.76 3.33
3101 8359 1.136446 CCGAACACGAATCGAACCAAC 60.136 52.381 10.55 0.00 42.76 3.77
3102 8360 1.141645 CCGAACACGAATCGAACCAA 58.858 50.000 10.55 0.00 42.76 3.67
3103 8361 0.032403 ACCGAACACGAATCGAACCA 59.968 50.000 10.55 0.00 42.76 3.67
3104 8362 1.650645 GTACCGAACACGAATCGAACC 59.349 52.381 10.55 0.00 42.76 3.62
3105 8363 2.589014 AGTACCGAACACGAATCGAAC 58.411 47.619 10.55 8.06 42.76 3.95
3106 8364 2.995466 AGTACCGAACACGAATCGAA 57.005 45.000 10.55 0.00 42.76 3.71
3107 8365 2.981805 CAAAGTACCGAACACGAATCGA 59.018 45.455 10.55 0.00 42.76 3.59
3108 8366 2.981805 TCAAAGTACCGAACACGAATCG 59.018 45.455 0.00 0.00 39.92 3.34
3109 8367 6.636666 TTATCAAAGTACCGAACACGAATC 57.363 37.500 0.00 0.00 0.00 2.52
3110 8368 7.605410 AATTATCAAAGTACCGAACACGAAT 57.395 32.000 0.00 0.00 0.00 3.34
3111 8369 7.171167 TCAAATTATCAAAGTACCGAACACGAA 59.829 33.333 0.00 0.00 0.00 3.85
3112 8370 6.645827 TCAAATTATCAAAGTACCGAACACGA 59.354 34.615 0.00 0.00 0.00 4.35
3113 8371 6.823531 TCAAATTATCAAAGTACCGAACACG 58.176 36.000 0.00 0.00 0.00 4.49
3118 8376 9.051679 CCACATATCAAATTATCAAAGTACCGA 57.948 33.333 0.00 0.00 0.00 4.69
3119 8377 8.289618 CCCACATATCAAATTATCAAAGTACCG 58.710 37.037 0.00 0.00 0.00 4.02
3120 8378 9.131791 ACCCACATATCAAATTATCAAAGTACC 57.868 33.333 0.00 0.00 0.00 3.34
3121 8379 9.950680 CACCCACATATCAAATTATCAAAGTAC 57.049 33.333 0.00 0.00 0.00 2.73
3122 8380 9.130661 CCACCCACATATCAAATTATCAAAGTA 57.869 33.333 0.00 0.00 0.00 2.24
3123 8381 7.838696 TCCACCCACATATCAAATTATCAAAGT 59.161 33.333 0.00 0.00 0.00 2.66
3124 8382 8.137437 GTCCACCCACATATCAAATTATCAAAG 58.863 37.037 0.00 0.00 0.00 2.77
3125 8383 7.838696 AGTCCACCCACATATCAAATTATCAAA 59.161 33.333 0.00 0.00 0.00 2.69
3126 8384 7.285172 CAGTCCACCCACATATCAAATTATCAA 59.715 37.037 0.00 0.00 0.00 2.57
3127 8385 6.772233 CAGTCCACCCACATATCAAATTATCA 59.228 38.462 0.00 0.00 0.00 2.15
3128 8386 6.207417 CCAGTCCACCCACATATCAAATTATC 59.793 42.308 0.00 0.00 0.00 1.75
3129 8387 6.070656 CCAGTCCACCCACATATCAAATTAT 58.929 40.000 0.00 0.00 0.00 1.28
3130 8388 5.044476 ACCAGTCCACCCACATATCAAATTA 60.044 40.000 0.00 0.00 0.00 1.40
3131 8389 4.264352 ACCAGTCCACCCACATATCAAATT 60.264 41.667 0.00 0.00 0.00 1.82
3132 8390 3.269381 ACCAGTCCACCCACATATCAAAT 59.731 43.478 0.00 0.00 0.00 2.32
3133 8391 2.647299 ACCAGTCCACCCACATATCAAA 59.353 45.455 0.00 0.00 0.00 2.69
3134 8392 2.026356 CACCAGTCCACCCACATATCAA 60.026 50.000 0.00 0.00 0.00 2.57
3135 8393 1.559219 CACCAGTCCACCCACATATCA 59.441 52.381 0.00 0.00 0.00 2.15
3136 8394 1.747206 GCACCAGTCCACCCACATATC 60.747 57.143 0.00 0.00 0.00 1.63
3137 8395 0.255890 GCACCAGTCCACCCACATAT 59.744 55.000 0.00 0.00 0.00 1.78
3138 8396 0.840288 AGCACCAGTCCACCCACATA 60.840 55.000 0.00 0.00 0.00 2.29
3139 8397 1.719063 AAGCACCAGTCCACCCACAT 61.719 55.000 0.00 0.00 0.00 3.21
3140 8398 1.057275 TAAGCACCAGTCCACCCACA 61.057 55.000 0.00 0.00 0.00 4.17
3141 8399 0.321653 CTAAGCACCAGTCCACCCAC 60.322 60.000 0.00 0.00 0.00 4.61
3142 8400 1.488705 CCTAAGCACCAGTCCACCCA 61.489 60.000 0.00 0.00 0.00 4.51
3143 8401 1.299976 CCTAAGCACCAGTCCACCC 59.700 63.158 0.00 0.00 0.00 4.61
3144 8402 0.321653 CACCTAAGCACCAGTCCACC 60.322 60.000 0.00 0.00 0.00 4.61
3145 8403 0.396811 ACACCTAAGCACCAGTCCAC 59.603 55.000 0.00 0.00 0.00 4.02
3146 8404 1.136828 AACACCTAAGCACCAGTCCA 58.863 50.000 0.00 0.00 0.00 4.02
3147 8405 1.202770 ACAACACCTAAGCACCAGTCC 60.203 52.381 0.00 0.00 0.00 3.85
3148 8406 2.256117 ACAACACCTAAGCACCAGTC 57.744 50.000 0.00 0.00 0.00 3.51
3149 8407 2.172717 AGAACAACACCTAAGCACCAGT 59.827 45.455 0.00 0.00 0.00 4.00
3150 8408 2.851195 AGAACAACACCTAAGCACCAG 58.149 47.619 0.00 0.00 0.00 4.00
3151 8409 3.290948 AAGAACAACACCTAAGCACCA 57.709 42.857 0.00 0.00 0.00 4.17
3152 8410 4.386711 AGTAAGAACAACACCTAAGCACC 58.613 43.478 0.00 0.00 0.00 5.01
3153 8411 5.526111 TCAAGTAAGAACAACACCTAAGCAC 59.474 40.000 0.00 0.00 0.00 4.40
3154 8412 5.676552 TCAAGTAAGAACAACACCTAAGCA 58.323 37.500 0.00 0.00 0.00 3.91
3155 8413 6.427974 GTTCAAGTAAGAACAACACCTAAGC 58.572 40.000 0.00 0.00 45.53 3.09
3166 8424 6.990939 AGTAGGAGGTTTGTTCAAGTAAGAAC 59.009 38.462 0.00 0.00 46.22 3.01
3167 8425 7.133133 AGTAGGAGGTTTGTTCAAGTAAGAA 57.867 36.000 0.00 0.00 0.00 2.52
3168 8426 6.742559 AGTAGGAGGTTTGTTCAAGTAAGA 57.257 37.500 0.00 0.00 0.00 2.10
3169 8427 8.936864 CATAAGTAGGAGGTTTGTTCAAGTAAG 58.063 37.037 0.00 0.00 0.00 2.34
3170 8428 7.881232 CCATAAGTAGGAGGTTTGTTCAAGTAA 59.119 37.037 0.00 0.00 0.00 2.24
3171 8429 7.016858 ACCATAAGTAGGAGGTTTGTTCAAGTA 59.983 37.037 0.00 0.00 0.00 2.24
3172 8430 6.183361 ACCATAAGTAGGAGGTTTGTTCAAGT 60.183 38.462 0.00 0.00 0.00 3.16
3173 8431 6.238648 ACCATAAGTAGGAGGTTTGTTCAAG 58.761 40.000 0.00 0.00 0.00 3.02
3174 8432 6.195600 ACCATAAGTAGGAGGTTTGTTCAA 57.804 37.500 0.00 0.00 0.00 2.69
3175 8433 5.836024 ACCATAAGTAGGAGGTTTGTTCA 57.164 39.130 0.00 0.00 0.00 3.18
3176 8434 7.120285 GGTTAACCATAAGTAGGAGGTTTGTTC 59.880 40.741 20.12 0.00 41.33 3.18
3177 8435 6.944290 GGTTAACCATAAGTAGGAGGTTTGTT 59.056 38.462 20.12 0.00 41.33 2.83
3178 8436 6.479006 GGTTAACCATAAGTAGGAGGTTTGT 58.521 40.000 20.12 0.00 41.33 2.83
3179 8437 5.884232 GGGTTAACCATAAGTAGGAGGTTTG 59.116 44.000 25.71 0.00 41.33 2.93
3180 8438 5.794289 AGGGTTAACCATAAGTAGGAGGTTT 59.206 40.000 25.71 0.00 41.33 3.27
3181 8439 5.356575 AGGGTTAACCATAAGTAGGAGGTT 58.643 41.667 25.71 0.00 45.63 3.50
3182 8440 4.967442 GAGGGTTAACCATAAGTAGGAGGT 59.033 45.833 25.71 0.00 43.89 3.85
3183 8441 4.347292 GGAGGGTTAACCATAAGTAGGAGG 59.653 50.000 25.71 0.00 43.89 4.30
3184 8442 4.347292 GGGAGGGTTAACCATAAGTAGGAG 59.653 50.000 25.71 0.00 43.89 3.69
3185 8443 4.301205 GGGAGGGTTAACCATAAGTAGGA 58.699 47.826 25.71 0.00 43.89 2.94
3186 8444 3.070590 CGGGAGGGTTAACCATAAGTAGG 59.929 52.174 25.71 2.85 43.89 3.18
3187 8445 3.493873 GCGGGAGGGTTAACCATAAGTAG 60.494 52.174 25.71 11.27 43.89 2.57
3188 8446 2.435437 GCGGGAGGGTTAACCATAAGTA 59.565 50.000 25.71 0.00 43.89 2.24
3189 8447 1.211212 GCGGGAGGGTTAACCATAAGT 59.789 52.381 25.71 4.79 43.89 2.24
3190 8448 1.210967 TGCGGGAGGGTTAACCATAAG 59.789 52.381 25.71 14.04 43.89 1.73
3191 8449 1.287217 TGCGGGAGGGTTAACCATAA 58.713 50.000 25.71 0.87 43.89 1.90
3192 8450 1.210967 CTTGCGGGAGGGTTAACCATA 59.789 52.381 25.71 0.37 43.89 2.74
3193 8451 0.034477 CTTGCGGGAGGGTTAACCAT 60.034 55.000 25.71 19.91 43.89 3.55
3194 8452 1.377229 CTTGCGGGAGGGTTAACCA 59.623 57.895 25.71 0.38 43.89 3.67
3195 8453 2.044555 GCTTGCGGGAGGGTTAACC 61.045 63.158 16.85 16.85 40.67 2.85
3196 8454 0.679960 ATGCTTGCGGGAGGGTTAAC 60.680 55.000 0.00 0.00 0.00 2.01
3197 8455 0.393808 GATGCTTGCGGGAGGGTTAA 60.394 55.000 0.00 0.00 0.00 2.01
3198 8456 1.223487 GATGCTTGCGGGAGGGTTA 59.777 57.895 0.00 0.00 0.00 2.85
3199 8457 2.044946 GATGCTTGCGGGAGGGTT 60.045 61.111 0.00 0.00 0.00 4.11
3200 8458 4.115199 GGATGCTTGCGGGAGGGT 62.115 66.667 0.00 0.00 0.00 4.34
3204 8462 4.713735 TTGCGGATGCTTGCGGGA 62.714 61.111 15.02 0.00 43.34 5.14
3205 8463 4.481112 GTTGCGGATGCTTGCGGG 62.481 66.667 15.02 0.00 43.34 6.13
3206 8464 2.106074 TAGTTGCGGATGCTTGCGG 61.106 57.895 15.02 0.00 43.34 5.69
3207 8465 1.060937 GTAGTTGCGGATGCTTGCG 59.939 57.895 9.20 9.20 43.34 4.85
3208 8466 1.060937 CGTAGTTGCGGATGCTTGC 59.939 57.895 0.00 0.00 43.34 4.01
3209 8467 0.647410 CTCGTAGTTGCGGATGCTTG 59.353 55.000 0.00 0.00 43.34 4.01
3210 8468 0.530744 TCTCGTAGTTGCGGATGCTT 59.469 50.000 0.00 0.00 43.34 3.91
3211 8469 0.530744 TTCTCGTAGTTGCGGATGCT 59.469 50.000 0.00 0.00 43.34 3.79
3212 8470 1.355971 TTTCTCGTAGTTGCGGATGC 58.644 50.000 0.00 0.00 43.20 3.91
3213 8471 2.993899 ACTTTTCTCGTAGTTGCGGATG 59.006 45.455 0.00 0.00 0.00 3.51
3214 8472 3.314541 ACTTTTCTCGTAGTTGCGGAT 57.685 42.857 0.00 0.00 0.00 4.18
3215 8473 2.806608 ACTTTTCTCGTAGTTGCGGA 57.193 45.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.