Multiple sequence alignment - TraesCS1D01G400200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G400200 chr1D 100.000 4907 0 0 1 4907 466485586 466480680 0.000000e+00 9062.0
1 TraesCS1D01G400200 chr1D 90.685 365 23 8 1 359 483965571 483965930 4.440000e-130 475.0
2 TraesCS1D01G400200 chr1B 92.811 2017 101 17 2388 4373 643249057 643247054 0.000000e+00 2881.0
3 TraesCS1D01G400200 chr1B 92.933 1698 48 25 651 2287 643250828 643249142 0.000000e+00 2405.0
4 TraesCS1D01G400200 chr1B 88.462 208 18 3 4470 4672 643247052 643246846 3.790000e-61 246.0
5 TraesCS1D01G400200 chr1B 90.299 134 7 3 439 572 643250987 643250860 2.350000e-38 171.0
6 TraesCS1D01G400200 chr1B 96.117 103 3 1 4374 4476 48923733 48923632 3.040000e-37 167.0
7 TraesCS1D01G400200 chr1B 91.346 104 4 3 4790 4888 643246801 643246698 2.380000e-28 137.0
8 TraesCS1D01G400200 chr1A 93.833 1508 59 8 1981 3457 558594909 558593405 0.000000e+00 2239.0
9 TraesCS1D01G400200 chr1A 85.329 1261 110 36 421 1635 558596407 558595176 0.000000e+00 1234.0
10 TraesCS1D01G400200 chr1A 96.761 494 8 2 3443 3928 558593387 558592894 0.000000e+00 817.0
11 TraesCS1D01G400200 chr1A 86.538 208 10 7 4171 4364 558592515 558592312 3.850000e-51 213.0
12 TraesCS1D01G400200 chr1A 87.006 177 10 4 4720 4884 558591864 558591689 2.330000e-43 187.0
13 TraesCS1D01G400200 chr4A 90.092 434 25 4 2497 2915 708712549 708712119 9.290000e-152 547.0
14 TraesCS1D01G400200 chr4A 93.793 145 8 1 2144 2287 17797318 17797462 2.970000e-52 217.0
15 TraesCS1D01G400200 chr4A 92.437 119 9 0 2947 3065 708712121 708712003 2.350000e-38 171.0
16 TraesCS1D01G400200 chr4A 95.192 104 5 0 4367 4470 650040875 650040978 1.090000e-36 165.0
17 TraesCS1D01G400200 chr4A 91.379 58 5 0 2288 2345 497859111 497859168 4.070000e-11 80.5
18 TraesCS1D01G400200 chr7D 92.541 362 25 2 1 360 514742567 514742206 7.280000e-143 518.0
19 TraesCS1D01G400200 chr7D 94.178 292 15 2 1997 2287 533622183 533621893 1.250000e-120 444.0
20 TraesCS1D01G400200 chr7D 95.327 107 3 2 4365 4470 407716525 407716630 8.450000e-38 169.0
21 TraesCS1D01G400200 chr7D 95.238 105 5 0 4366 4470 489010791 489010687 3.040000e-37 167.0
22 TraesCS1D01G400200 chr7D 94.393 107 4 2 4371 4476 162222309 162222204 3.930000e-36 163.0
23 TraesCS1D01G400200 chr6A 90.782 358 30 3 1 356 13393077 13393433 4.440000e-130 475.0
24 TraesCS1D01G400200 chr6A 95.192 104 4 1 4374 4476 23355078 23355181 3.930000e-36 163.0
25 TraesCS1D01G400200 chr6A 94.828 58 3 0 2288 2345 27062761 27062704 1.880000e-14 91.6
26 TraesCS1D01G400200 chr6A 94.444 36 1 1 4541 4575 506401361 506401396 2.000000e-03 54.7
27 TraesCS1D01G400200 chr4D 90.756 357 29 4 3 356 449398795 449399150 1.600000e-129 473.0
28 TraesCS1D01G400200 chr4D 93.103 58 4 0 2288 2345 393848445 393848502 8.750000e-13 86.1
29 TraesCS1D01G400200 chr4D 92.982 57 4 0 2288 2344 506541821 506541877 3.150000e-12 84.2
30 TraesCS1D01G400200 chr2D 89.532 363 32 5 1 361 29144877 29144519 5.790000e-124 455.0
31 TraesCS1D01G400200 chr2D 89.136 359 36 3 1 358 390724347 390723991 1.250000e-120 444.0
32 TraesCS1D01G400200 chr3D 89.474 361 33 5 1 358 474652523 474652165 7.490000e-123 451.0
33 TraesCS1D01G400200 chr3D 93.750 112 4 3 4367 4477 290583923 290583814 1.090000e-36 165.0
34 TraesCS1D01G400200 chr7B 94.521 292 14 2 1997 2287 685032247 685032537 2.690000e-122 449.0
35 TraesCS1D01G400200 chr7B 91.379 58 5 0 2287 2344 33896445 33896388 4.070000e-11 80.5
36 TraesCS1D01G400200 chr6D 89.227 362 32 5 1 359 178846847 178846490 3.480000e-121 446.0
37 TraesCS1D01G400200 chr2A 89.136 359 36 3 1 357 706272837 706273194 1.250000e-120 444.0
38 TraesCS1D01G400200 chr2A 93.151 292 18 2 1997 2287 707010289 707010579 1.260000e-115 427.0
39 TraesCS1D01G400200 chr6B 93.836 292 16 2 1997 2287 222001669 222001959 5.830000e-119 438.0
40 TraesCS1D01G400200 chr5B 92.083 240 18 1 2826 3065 369157249 369157011 2.190000e-88 337.0
41 TraesCS1D01G400200 chr4B 96.262 107 3 1 4373 4478 216814997 216815103 1.820000e-39 174.0
42 TraesCS1D01G400200 chr4B 94.828 58 3 0 2287 2344 520237242 520237185 1.880000e-14 91.6
43 TraesCS1D01G400200 chr5D 96.078 102 4 0 4371 4472 262838692 262838793 3.040000e-37 167.0
44 TraesCS1D01G400200 chr5D 92.982 57 3 1 2289 2345 436797433 436797378 1.130000e-11 82.4
45 TraesCS1D01G400200 chr5D 100.000 31 0 0 4547 4577 367429578 367429548 1.910000e-04 58.4
46 TraesCS1D01G400200 chr7A 93.103 58 3 1 2288 2345 109265847 109265791 3.150000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G400200 chr1D 466480680 466485586 4906 True 9062 9062 100.0000 1 4907 1 chr1D.!!$R1 4906
1 TraesCS1D01G400200 chr1B 643246698 643250987 4289 True 1168 2881 91.1702 439 4888 5 chr1B.!!$R2 4449
2 TraesCS1D01G400200 chr1A 558591689 558596407 4718 True 938 2239 89.8934 421 4884 5 chr1A.!!$R1 4463
3 TraesCS1D01G400200 chr4A 708712003 708712549 546 True 359 547 91.2645 2497 3065 2 chr4A.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 398 0.037160 GAGGGGCACGAAAAAGGGTA 59.963 55.0 0.0 0.0 0.00 3.69 F
407 408 0.039035 AAAAAGGGTATGGCAGGCGA 59.961 50.0 0.0 0.0 0.00 5.54 F
408 409 0.258774 AAAAGGGTATGGCAGGCGAT 59.741 50.0 0.0 0.0 0.00 4.58 F
423 424 0.319900 GCGATGCGATCCCATGTACT 60.320 55.0 0.0 0.0 0.00 2.73 F
546 551 0.321298 TGGAGAAAAGTAGGCACGGC 60.321 55.0 0.0 0.0 0.00 5.68 F
2336 2445 0.546598 CGGGGGTATTCCTGCTTCTT 59.453 55.0 0.0 0.0 35.33 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2302 1.227823 CACCTGGCGTGAAGGAACA 60.228 57.895 7.11 0.00 46.20 3.18 R
2285 2394 3.691118 TCTCTTGATGCAAACAGCCATAC 59.309 43.478 0.00 0.00 44.83 2.39 R
2346 2456 6.183360 ACCTCCAAAGCAACATAAACAATCAA 60.183 34.615 0.00 0.00 0.00 2.57 R
2372 2482 8.211629 ACTTCTTCACTAACCATTCTTTGTAGT 58.788 33.333 0.00 0.00 0.00 2.73 R
2569 2746 0.816825 CCGGGATGTTCATCAGCAGG 60.817 60.000 13.64 7.56 33.66 4.85 R
3950 4184 0.047176 TATGTCTTCCCCCACCCCAT 59.953 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.052229 CGTCGCCCCGTCTTCACT 62.052 66.667 0.00 0.00 0.00 3.41
24 25 2.432628 GTCGCCCCGTCTTCACTG 60.433 66.667 0.00 0.00 0.00 3.66
25 26 4.373116 TCGCCCCGTCTTCACTGC 62.373 66.667 0.00 0.00 0.00 4.40
52 53 3.377346 CGTGAGGTATCAATGGAGGAG 57.623 52.381 0.00 0.00 37.14 3.69
53 54 2.036475 CGTGAGGTATCAATGGAGGAGG 59.964 54.545 0.00 0.00 37.14 4.30
54 55 2.050144 TGAGGTATCAATGGAGGAGGC 58.950 52.381 0.00 0.00 30.61 4.70
55 56 2.334023 GAGGTATCAATGGAGGAGGCT 58.666 52.381 0.00 0.00 0.00 4.58
56 57 2.038295 GAGGTATCAATGGAGGAGGCTG 59.962 54.545 0.00 0.00 0.00 4.85
57 58 2.050144 GGTATCAATGGAGGAGGCTGA 58.950 52.381 0.00 0.00 0.00 4.26
58 59 2.224402 GGTATCAATGGAGGAGGCTGAC 60.224 54.545 0.00 0.00 0.00 3.51
59 60 0.842635 ATCAATGGAGGAGGCTGACC 59.157 55.000 0.00 0.00 0.00 4.02
60 61 1.153289 CAATGGAGGAGGCTGACCG 60.153 63.158 0.00 0.00 42.76 4.79
61 62 2.370445 AATGGAGGAGGCTGACCGG 61.370 63.158 0.00 0.00 42.76 5.28
79 80 4.424566 CGCGGCAGCTTTGGCATT 62.425 61.111 7.38 0.00 42.32 3.56
80 81 2.812178 GCGGCAGCTTTGGCATTG 60.812 61.111 0.00 0.00 41.70 2.82
81 82 2.964174 CGGCAGCTTTGGCATTGA 59.036 55.556 0.46 0.00 41.70 2.57
82 83 1.514087 CGGCAGCTTTGGCATTGAT 59.486 52.632 0.46 0.00 41.70 2.57
83 84 0.108520 CGGCAGCTTTGGCATTGATT 60.109 50.000 0.46 0.00 41.70 2.57
84 85 1.648504 GGCAGCTTTGGCATTGATTC 58.351 50.000 0.00 0.00 41.70 2.52
85 86 1.648504 GCAGCTTTGGCATTGATTCC 58.351 50.000 0.00 0.00 41.70 3.01
86 87 1.741394 GCAGCTTTGGCATTGATTCCC 60.741 52.381 0.00 0.00 41.70 3.97
87 88 1.134610 CAGCTTTGGCATTGATTCCCC 60.135 52.381 0.00 0.00 41.70 4.81
88 89 0.178767 GCTTTGGCATTGATTCCCCC 59.821 55.000 0.00 0.00 38.54 5.40
89 90 0.461135 CTTTGGCATTGATTCCCCCG 59.539 55.000 0.00 0.00 0.00 5.73
90 91 1.612395 TTTGGCATTGATTCCCCCGC 61.612 55.000 0.00 0.00 0.00 6.13
91 92 3.595758 GGCATTGATTCCCCCGCG 61.596 66.667 0.00 0.00 0.00 6.46
92 93 3.595758 GCATTGATTCCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
114 115 4.477975 CGAGGCGGTGAGGACGAC 62.478 72.222 0.00 0.00 40.35 4.34
115 116 4.477975 GAGGCGGTGAGGACGACG 62.478 72.222 0.00 0.00 45.85 5.12
117 118 4.047059 GGCGGTGAGGACGACGAA 62.047 66.667 0.00 0.00 0.00 3.85
118 119 2.504244 GCGGTGAGGACGACGAAG 60.504 66.667 0.00 0.00 0.00 3.79
119 120 2.504244 CGGTGAGGACGACGAAGC 60.504 66.667 0.00 0.00 0.00 3.86
120 121 2.504244 GGTGAGGACGACGAAGCG 60.504 66.667 0.00 0.00 37.29 4.68
121 122 2.559840 GTGAGGACGACGAAGCGA 59.440 61.111 0.00 0.00 34.83 4.93
122 123 1.796749 GTGAGGACGACGAAGCGAC 60.797 63.158 0.00 0.00 34.83 5.19
124 125 3.020026 GAGGACGACGAAGCGACGA 62.020 63.158 17.06 0.00 46.01 4.20
125 126 2.573689 GGACGACGAAGCGACGAG 60.574 66.667 17.06 7.99 46.01 4.18
126 127 2.473378 GACGACGAAGCGACGAGA 59.527 61.111 17.06 0.00 46.01 4.04
127 128 1.154525 GACGACGAAGCGACGAGAA 60.155 57.895 17.06 0.00 46.01 2.87
128 129 1.121281 GACGACGAAGCGACGAGAAG 61.121 60.000 17.06 0.00 46.01 2.85
129 130 1.132029 CGACGAAGCGACGAGAAGA 59.868 57.895 11.93 0.00 46.01 2.87
130 131 0.854037 CGACGAAGCGACGAGAAGAG 60.854 60.000 11.93 0.00 46.01 2.85
131 132 1.129301 GACGAAGCGACGAGAAGAGC 61.129 60.000 11.93 0.00 37.03 4.09
132 133 1.870016 CGAAGCGACGAGAAGAGCC 60.870 63.158 0.00 0.00 35.09 4.70
133 134 1.870016 GAAGCGACGAGAAGAGCCG 60.870 63.158 0.00 0.00 0.00 5.52
134 135 2.254703 GAAGCGACGAGAAGAGCCGA 62.255 60.000 0.00 0.00 0.00 5.54
135 136 2.259875 AAGCGACGAGAAGAGCCGAG 62.260 60.000 0.00 0.00 0.00 4.63
136 137 3.041627 GCGACGAGAAGAGCCGAGT 62.042 63.158 0.00 0.00 0.00 4.18
137 138 1.061253 CGACGAGAAGAGCCGAGTC 59.939 63.158 0.00 0.00 0.00 3.36
138 139 1.061253 GACGAGAAGAGCCGAGTCG 59.939 63.158 5.29 5.29 36.71 4.18
139 140 2.277628 CGAGAAGAGCCGAGTCGC 60.278 66.667 7.12 2.73 0.00 5.19
140 141 2.756025 CGAGAAGAGCCGAGTCGCT 61.756 63.158 7.12 8.14 43.42 4.93
141 142 1.226547 GAGAAGAGCCGAGTCGCTG 60.227 63.158 7.12 0.00 39.87 5.18
142 143 2.883253 GAAGAGCCGAGTCGCTGC 60.883 66.667 7.12 6.32 39.87 5.25
143 144 4.443266 AAGAGCCGAGTCGCTGCC 62.443 66.667 7.12 1.01 39.87 4.85
145 146 4.742201 GAGCCGAGTCGCTGCCAA 62.742 66.667 7.12 0.00 39.87 4.52
148 149 4.717629 CCGAGTCGCTGCCAACGA 62.718 66.667 7.12 0.00 37.17 3.85
149 150 3.175240 CGAGTCGCTGCCAACGAG 61.175 66.667 0.00 0.00 40.80 4.18
150 151 2.811317 GAGTCGCTGCCAACGAGG 60.811 66.667 0.00 0.00 40.80 4.63
151 152 4.379243 AGTCGCTGCCAACGAGGG 62.379 66.667 0.00 0.00 40.80 4.30
164 165 3.209812 GAGGGCCCGCCGATTTTC 61.210 66.667 18.44 1.01 36.85 2.29
170 171 3.259020 CCGCCGATTTTCGCGCTA 61.259 61.111 5.56 0.00 38.82 4.26
171 172 2.698616 CGCCGATTTTCGCGCTAA 59.301 55.556 5.56 0.00 38.82 3.09
172 173 1.059681 CGCCGATTTTCGCGCTAAA 59.940 52.632 5.56 3.91 38.82 1.85
173 174 0.519586 CGCCGATTTTCGCGCTAAAA 60.520 50.000 20.29 20.29 38.82 1.52
174 175 1.608822 GCCGATTTTCGCGCTAAAAA 58.391 45.000 21.59 18.89 38.82 1.94
175 176 1.316443 GCCGATTTTCGCGCTAAAAAC 59.684 47.619 21.59 17.95 38.82 2.43
176 177 1.571402 CCGATTTTCGCGCTAAAAACG 59.429 47.619 29.86 29.86 41.48 3.60
177 178 2.488081 CGATTTTCGCGCTAAAAACGA 58.512 42.857 31.78 10.63 43.25 3.85
178 179 3.088552 CGATTTTCGCGCTAAAAACGAT 58.911 40.909 31.78 14.99 43.25 3.73
179 180 3.536837 CGATTTTCGCGCTAAAAACGATT 59.463 39.130 31.78 14.67 43.25 3.34
180 181 4.314812 CGATTTTCGCGCTAAAAACGATTC 60.315 41.667 31.78 19.84 43.25 2.52
181 182 2.133648 TTCGCGCTAAAAACGATTCG 57.866 45.000 5.56 4.14 35.48 3.34
182 183 0.367548 TCGCGCTAAAAACGATTCGG 59.632 50.000 11.29 0.00 0.00 4.30
183 184 1.185733 CGCGCTAAAAACGATTCGGC 61.186 55.000 11.29 1.97 0.00 5.54
184 185 0.860203 GCGCTAAAAACGATTCGGCC 60.860 55.000 11.29 0.00 0.00 6.13
185 186 0.585519 CGCTAAAAACGATTCGGCCG 60.586 55.000 22.12 22.12 0.00 6.13
186 187 0.247934 GCTAAAAACGATTCGGCCGG 60.248 55.000 27.83 11.94 0.00 6.13
187 188 0.247934 CTAAAAACGATTCGGCCGGC 60.248 55.000 27.83 21.18 0.00 6.13
188 189 1.968703 TAAAAACGATTCGGCCGGCG 61.969 55.000 27.83 26.79 0.00 6.46
245 246 4.834892 CGCCGGCGCCAATTTCAG 62.835 66.667 38.48 5.99 0.00 3.02
247 248 4.496927 CCGGCGCCAATTTCAGCC 62.497 66.667 28.98 5.08 45.67 4.85
248 249 4.496927 CGGCGCCAATTTCAGCCC 62.497 66.667 28.98 0.00 46.36 5.19
249 250 3.381136 GGCGCCAATTTCAGCCCA 61.381 61.111 24.80 0.00 43.54 5.36
250 251 2.656055 GCGCCAATTTCAGCCCAA 59.344 55.556 0.00 0.00 0.00 4.12
251 252 1.446618 GCGCCAATTTCAGCCCAAG 60.447 57.895 0.00 0.00 0.00 3.61
252 253 1.446618 CGCCAATTTCAGCCCAAGC 60.447 57.895 0.00 0.00 40.32 4.01
253 254 1.078918 GCCAATTTCAGCCCAAGCC 60.079 57.895 0.00 0.00 41.25 4.35
254 255 1.216178 CCAATTTCAGCCCAAGCCG 59.784 57.895 0.00 0.00 41.25 5.52
255 256 1.216178 CAATTTCAGCCCAAGCCGG 59.784 57.895 0.00 0.00 41.25 6.13
262 263 3.984749 GCCCAAGCCGGCGAAAAA 61.985 61.111 23.20 0.00 39.64 1.94
279 280 1.226746 AAAAGGTCTTTGAGGACGCG 58.773 50.000 3.53 3.53 37.12 6.01
280 281 0.391597 AAAGGTCTTTGAGGACGCGA 59.608 50.000 15.93 0.00 37.12 5.87
281 282 0.319641 AAGGTCTTTGAGGACGCGAC 60.320 55.000 15.93 6.56 37.12 5.19
282 283 1.179814 AGGTCTTTGAGGACGCGACT 61.180 55.000 15.93 11.01 37.12 4.18
283 284 1.009389 GGTCTTTGAGGACGCGACTG 61.009 60.000 15.93 0.00 37.12 3.51
284 285 1.009389 GTCTTTGAGGACGCGACTGG 61.009 60.000 15.93 1.16 0.00 4.00
285 286 1.738099 CTTTGAGGACGCGACTGGG 60.738 63.158 15.93 0.00 0.00 4.45
286 287 3.876589 TTTGAGGACGCGACTGGGC 62.877 63.158 15.93 0.00 0.00 5.36
291 292 4.814294 GACGCGACTGGGCCGATT 62.814 66.667 15.93 0.00 0.00 3.34
292 293 4.388499 ACGCGACTGGGCCGATTT 62.388 61.111 15.93 0.00 0.00 2.17
293 294 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
294 295 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
295 296 1.136774 GCGACTGGGCCGATTTTTC 59.863 57.895 0.00 0.00 0.00 2.29
296 297 1.423845 CGACTGGGCCGATTTTTCG 59.576 57.895 0.00 0.00 0.00 3.46
297 298 1.017177 CGACTGGGCCGATTTTTCGA 61.017 55.000 0.00 0.00 34.64 3.71
298 299 0.446616 GACTGGGCCGATTTTTCGAC 59.553 55.000 0.00 0.00 34.64 4.20
299 300 1.296056 ACTGGGCCGATTTTTCGACG 61.296 55.000 0.00 0.00 34.64 5.12
300 301 2.099638 GGGCCGATTTTTCGACGC 59.900 61.111 0.00 0.00 34.64 5.19
301 302 2.099638 GGCCGATTTTTCGACGCC 59.900 61.111 0.00 0.00 34.44 5.68
302 303 2.276430 GCCGATTTTTCGACGCCG 60.276 61.111 0.00 0.00 34.64 6.46
303 304 2.398036 CCGATTTTTCGACGCCGG 59.602 61.111 0.00 0.00 36.24 6.13
304 305 2.095847 CCGATTTTTCGACGCCGGA 61.096 57.895 5.05 0.00 39.31 5.14
305 306 1.343821 CGATTTTTCGACGCCGGAG 59.656 57.895 5.05 3.72 36.24 4.63
306 307 2.020836 CGATTTTTCGACGCCGGAGG 62.021 60.000 5.05 0.00 43.92 4.30
330 331 3.923017 AAAAATCGCCTGAAGACCTTG 57.077 42.857 0.00 0.00 0.00 3.61
331 332 2.568623 AAATCGCCTGAAGACCTTGT 57.431 45.000 0.00 0.00 0.00 3.16
332 333 2.568623 AATCGCCTGAAGACCTTGTT 57.431 45.000 0.00 0.00 0.00 2.83
333 334 1.813513 ATCGCCTGAAGACCTTGTTG 58.186 50.000 0.00 0.00 0.00 3.33
334 335 0.756294 TCGCCTGAAGACCTTGTTGA 59.244 50.000 0.00 0.00 0.00 3.18
335 336 1.151668 CGCCTGAAGACCTTGTTGAG 58.848 55.000 0.00 0.00 0.00 3.02
355 356 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
356 357 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
357 358 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
358 359 0.599728 GCGGCTGGAGATGCTCTAAG 60.600 60.000 0.00 0.00 0.00 2.18
359 360 0.749649 CGGCTGGAGATGCTCTAAGT 59.250 55.000 0.00 0.00 0.00 2.24
360 361 1.137872 CGGCTGGAGATGCTCTAAGTT 59.862 52.381 0.00 0.00 0.00 2.66
361 362 2.362397 CGGCTGGAGATGCTCTAAGTTA 59.638 50.000 0.00 0.00 0.00 2.24
362 363 3.006323 CGGCTGGAGATGCTCTAAGTTAT 59.994 47.826 0.00 0.00 0.00 1.89
363 364 4.565022 GGCTGGAGATGCTCTAAGTTATC 58.435 47.826 0.00 0.00 0.00 1.75
364 365 4.283212 GGCTGGAGATGCTCTAAGTTATCT 59.717 45.833 0.00 0.00 32.87 1.98
365 366 5.221621 GGCTGGAGATGCTCTAAGTTATCTT 60.222 44.000 0.00 0.00 37.65 2.40
366 367 5.925969 GCTGGAGATGCTCTAAGTTATCTTC 59.074 44.000 0.00 0.00 35.36 2.87
367 368 6.412362 TGGAGATGCTCTAAGTTATCTTCC 57.588 41.667 0.00 0.00 35.36 3.46
368 369 5.010112 TGGAGATGCTCTAAGTTATCTTCCG 59.990 44.000 0.00 0.00 35.36 4.30
369 370 5.461032 AGATGCTCTAAGTTATCTTCCGG 57.539 43.478 0.00 0.00 35.36 5.14
370 371 3.454371 TGCTCTAAGTTATCTTCCGGC 57.546 47.619 0.00 0.00 35.36 6.13
371 372 2.223735 TGCTCTAAGTTATCTTCCGGCG 60.224 50.000 0.00 0.00 35.36 6.46
372 373 2.395654 CTCTAAGTTATCTTCCGGCGC 58.604 52.381 0.00 0.00 35.36 6.53
373 374 2.029623 TCTAAGTTATCTTCCGGCGCT 58.970 47.619 7.64 0.00 35.36 5.92
374 375 2.034305 TCTAAGTTATCTTCCGGCGCTC 59.966 50.000 7.64 0.00 35.36 5.03
375 376 0.535335 AAGTTATCTTCCGGCGCTCA 59.465 50.000 7.64 0.00 0.00 4.26
376 377 0.535335 AGTTATCTTCCGGCGCTCAA 59.465 50.000 7.64 0.00 0.00 3.02
377 378 1.139058 AGTTATCTTCCGGCGCTCAAT 59.861 47.619 7.64 0.00 0.00 2.57
378 379 1.261619 GTTATCTTCCGGCGCTCAATG 59.738 52.381 7.64 0.00 0.00 2.82
379 380 0.750249 TATCTTCCGGCGCTCAATGA 59.250 50.000 7.64 1.04 0.00 2.57
380 381 0.531532 ATCTTCCGGCGCTCAATGAG 60.532 55.000 7.64 5.78 0.00 2.90
381 382 2.125147 TTCCGGCGCTCAATGAGG 60.125 61.111 12.66 3.53 0.00 3.86
382 383 3.680620 TTCCGGCGCTCAATGAGGG 62.681 63.158 21.09 21.09 43.96 4.30
386 387 3.512516 GCGCTCAATGAGGGGCAC 61.513 66.667 25.27 8.28 41.88 5.01
387 388 3.197790 CGCTCAATGAGGGGCACG 61.198 66.667 18.20 6.16 38.66 5.34
388 389 2.268920 GCTCAATGAGGGGCACGA 59.731 61.111 12.66 0.00 0.00 4.35
389 390 1.377202 GCTCAATGAGGGGCACGAA 60.377 57.895 12.66 0.00 0.00 3.85
390 391 0.960364 GCTCAATGAGGGGCACGAAA 60.960 55.000 12.66 0.00 0.00 3.46
391 392 1.533625 CTCAATGAGGGGCACGAAAA 58.466 50.000 1.53 0.00 0.00 2.29
392 393 1.885887 CTCAATGAGGGGCACGAAAAA 59.114 47.619 1.53 0.00 0.00 1.94
393 394 1.885887 TCAATGAGGGGCACGAAAAAG 59.114 47.619 0.00 0.00 0.00 2.27
394 395 1.067635 CAATGAGGGGCACGAAAAAGG 60.068 52.381 0.00 0.00 0.00 3.11
395 396 0.611896 ATGAGGGGCACGAAAAAGGG 60.612 55.000 0.00 0.00 0.00 3.95
396 397 1.228459 GAGGGGCACGAAAAAGGGT 60.228 57.895 0.00 0.00 0.00 4.34
397 398 0.037160 GAGGGGCACGAAAAAGGGTA 59.963 55.000 0.00 0.00 0.00 3.69
398 399 0.702316 AGGGGCACGAAAAAGGGTAT 59.298 50.000 0.00 0.00 0.00 2.73
399 400 0.815095 GGGGCACGAAAAAGGGTATG 59.185 55.000 0.00 0.00 0.00 2.39
400 401 0.815095 GGGCACGAAAAAGGGTATGG 59.185 55.000 0.00 0.00 0.00 2.74
401 402 0.172578 GGCACGAAAAAGGGTATGGC 59.827 55.000 0.00 0.00 0.00 4.40
402 403 0.885196 GCACGAAAAAGGGTATGGCA 59.115 50.000 0.00 0.00 0.00 4.92
403 404 1.135402 GCACGAAAAAGGGTATGGCAG 60.135 52.381 0.00 0.00 0.00 4.85
404 405 1.472480 CACGAAAAAGGGTATGGCAGG 59.528 52.381 0.00 0.00 0.00 4.85
405 406 0.455815 CGAAAAAGGGTATGGCAGGC 59.544 55.000 0.00 0.00 0.00 4.85
406 407 0.455815 GAAAAAGGGTATGGCAGGCG 59.544 55.000 0.00 0.00 0.00 5.52
407 408 0.039035 AAAAAGGGTATGGCAGGCGA 59.961 50.000 0.00 0.00 0.00 5.54
408 409 0.258774 AAAAGGGTATGGCAGGCGAT 59.741 50.000 0.00 0.00 0.00 4.58
409 410 0.466189 AAAGGGTATGGCAGGCGATG 60.466 55.000 0.00 0.00 0.00 3.84
417 418 4.916293 GCAGGCGATGCGATCCCA 62.916 66.667 0.00 0.00 46.99 4.37
418 419 2.031616 CAGGCGATGCGATCCCAT 59.968 61.111 0.00 0.00 0.00 4.00
419 420 2.031616 AGGCGATGCGATCCCATG 59.968 61.111 0.00 0.00 0.00 3.66
420 421 2.281070 GGCGATGCGATCCCATGT 60.281 61.111 0.00 0.00 0.00 3.21
421 422 1.005037 GGCGATGCGATCCCATGTA 60.005 57.895 0.00 0.00 0.00 2.29
422 423 1.291877 GGCGATGCGATCCCATGTAC 61.292 60.000 0.00 0.00 0.00 2.90
423 424 0.319900 GCGATGCGATCCCATGTACT 60.320 55.000 0.00 0.00 0.00 2.73
424 425 1.422388 CGATGCGATCCCATGTACTG 58.578 55.000 0.00 0.00 0.00 2.74
425 426 1.269778 CGATGCGATCCCATGTACTGT 60.270 52.381 0.00 0.00 0.00 3.55
426 427 2.138320 GATGCGATCCCATGTACTGTG 58.862 52.381 0.00 0.00 0.00 3.66
427 428 1.190643 TGCGATCCCATGTACTGTGA 58.809 50.000 0.00 0.00 0.00 3.58
428 429 1.136891 TGCGATCCCATGTACTGTGAG 59.863 52.381 0.00 0.00 0.00 3.51
429 430 1.539065 GCGATCCCATGTACTGTGAGG 60.539 57.143 0.00 0.00 0.00 3.86
430 431 1.539065 CGATCCCATGTACTGTGAGGC 60.539 57.143 0.00 0.00 0.00 4.70
431 432 1.486310 GATCCCATGTACTGTGAGGCA 59.514 52.381 0.00 0.00 0.00 4.75
457 458 7.387948 AGAGTTATTATAATTCACCGTGATGCC 59.612 37.037 2.68 0.00 0.00 4.40
459 460 2.613026 ATAATTCACCGTGATGCCGA 57.387 45.000 1.09 0.00 0.00 5.54
521 526 3.669557 GCACGTGCTAATTAACCACCAAG 60.670 47.826 32.55 0.00 38.21 3.61
539 544 3.868077 CCAAGCGAGATGGAGAAAAGTAG 59.132 47.826 0.00 0.00 40.56 2.57
540 545 3.810310 AGCGAGATGGAGAAAAGTAGG 57.190 47.619 0.00 0.00 0.00 3.18
546 551 0.321298 TGGAGAAAAGTAGGCACGGC 60.321 55.000 0.00 0.00 0.00 5.68
566 571 5.047847 CGGCCGAGTGAGATTAAAAATAGA 58.952 41.667 24.07 0.00 0.00 1.98
594 599 5.291128 GTGGTACAACATCTCCAACGATAAG 59.709 44.000 0.00 0.00 44.16 1.73
610 615 2.550699 TAAGCCACTCCCATTGCCCG 62.551 60.000 0.00 0.00 0.00 6.13
713 720 2.839609 CCATCCACCCACCCACACA 61.840 63.158 0.00 0.00 0.00 3.72
714 721 1.603455 CATCCACCCACCCACACAC 60.603 63.158 0.00 0.00 0.00 3.82
715 722 2.081787 ATCCACCCACCCACACACA 61.082 57.895 0.00 0.00 0.00 3.72
717 724 2.899838 CACCCACCCACACACACG 60.900 66.667 0.00 0.00 0.00 4.49
907 931 3.407967 GCGTTCCATCCCCTCCCA 61.408 66.667 0.00 0.00 0.00 4.37
1372 1418 2.738139 CATCAGGTGCGTGCGTGA 60.738 61.111 6.30 6.30 37.61 4.35
1373 1419 2.738521 ATCAGGTGCGTGCGTGAC 60.739 61.111 6.04 0.00 36.32 3.67
1417 1472 1.789078 ATCGATCAATGCGGCCTTGC 61.789 55.000 12.40 0.00 0.00 4.01
1635 1701 1.141657 GCCATCACCAATCTAGCAGGA 59.858 52.381 2.49 0.00 0.00 3.86
1636 1702 2.809665 GCCATCACCAATCTAGCAGGAG 60.810 54.545 2.49 0.00 0.00 3.69
1637 1703 2.492012 CATCACCAATCTAGCAGGAGC 58.508 52.381 2.49 0.00 42.56 4.70
1638 1704 1.571955 TCACCAATCTAGCAGGAGCA 58.428 50.000 2.49 0.00 45.49 4.26
1639 1705 1.483827 TCACCAATCTAGCAGGAGCAG 59.516 52.381 2.49 0.00 45.49 4.24
1656 1722 4.637534 GGAGCAGCTAATCACTCAATTTCA 59.362 41.667 0.00 0.00 0.00 2.69
1698 1764 1.956297 TTCGTGAATGGTTTCCACGT 58.044 45.000 12.74 0.00 35.80 4.49
1708 1774 2.144078 TTTCCACGTCTGGCCCTGA 61.144 57.895 0.00 0.00 37.49 3.86
1710 1776 2.124983 CCACGTCTGGCCCTGATG 60.125 66.667 8.19 8.19 0.00 3.07
1942 2020 8.700973 AGAAAACAACCTTTTTGTACACCATAT 58.299 29.630 0.00 0.00 31.50 1.78
2276 2385 5.168647 ACCCCTATTTTCATTACACGTGA 57.831 39.130 25.01 0.00 0.00 4.35
2291 2400 5.229921 ACACGTGATTGTTTATGTATGGC 57.770 39.130 25.01 0.00 0.00 4.40
2295 2404 5.414454 ACGTGATTGTTTATGTATGGCTGTT 59.586 36.000 0.00 0.00 0.00 3.16
2330 2439 2.772622 AGGCCGGGGGTATTCCTG 60.773 66.667 2.18 0.00 35.33 3.86
2334 2443 1.148498 CCGGGGGTATTCCTGCTTC 59.852 63.158 0.00 0.00 35.33 3.86
2336 2445 0.546598 CGGGGGTATTCCTGCTTCTT 59.453 55.000 0.00 0.00 35.33 2.52
2337 2446 1.747206 CGGGGGTATTCCTGCTTCTTG 60.747 57.143 0.00 0.00 35.33 3.02
2372 2482 6.491745 TGATTGTTTATGTTGCTTTGGAGGTA 59.508 34.615 0.00 0.00 0.00 3.08
2444 2613 1.535462 CCTTAGGCGGTCACACTTTTG 59.465 52.381 0.00 0.00 0.00 2.44
2569 2746 2.065993 TAACTCAGCAACGCAGAGAC 57.934 50.000 14.34 0.00 43.34 3.36
2638 2815 9.184523 CTCCTTGTAATATAAAATTCCACACCA 57.815 33.333 0.00 0.00 0.00 4.17
2679 2856 5.981915 CGAGATTGATGTGAAGATAGCTGAA 59.018 40.000 0.00 0.00 0.00 3.02
3025 3218 9.042008 AGGACGTTATTATACAACAATCACATC 57.958 33.333 0.00 0.00 0.00 3.06
3065 3258 7.040494 ACATTACTGAGATCTCACATGACAAG 58.960 38.462 27.01 17.21 35.46 3.16
3083 3276 9.993454 CATGACAAGATCCTCTTATTCTTATGA 57.007 33.333 0.00 0.00 33.78 2.15
3183 3376 0.753867 TAGCAACGGTTGACCTGTCA 59.246 50.000 24.20 0.00 37.91 3.58
3256 3449 3.967203 TTTGGCAAAAGAAAATGCAGC 57.033 38.095 10.83 0.00 44.32 5.25
3441 3635 5.173131 CACTTTGTTTTCGGAATTGCTACAC 59.827 40.000 0.00 0.00 0.00 2.90
3564 3798 0.752376 AGAGCCTAGCCTACACCGTC 60.752 60.000 0.00 0.00 0.00 4.79
3591 3825 0.103208 GCATCGAGGACGTTCTCCAT 59.897 55.000 18.34 8.32 42.46 3.41
3759 3993 4.468769 TACGTGGGGCCTCGGGAT 62.469 66.667 20.86 7.31 37.27 3.85
3825 4059 0.246086 AGAAGCTGAGCAAGGTCTCG 59.754 55.000 7.39 0.00 34.84 4.04
3988 4222 1.959042 ATGTGCCAGATCATTCGGAC 58.041 50.000 0.00 0.00 0.00 4.79
3989 4223 0.107703 TGTGCCAGATCATTCGGACC 60.108 55.000 0.00 0.00 0.00 4.46
3990 4224 0.107703 GTGCCAGATCATTCGGACCA 60.108 55.000 0.00 0.00 0.00 4.02
3996 4230 3.489738 CCAGATCATTCGGACCAAAATGC 60.490 47.826 10.44 0.95 33.76 3.56
4064 4298 6.970484 ACTTGTGAGGTTTATGTAAGCTTTG 58.030 36.000 3.20 0.00 44.30 2.77
4069 4303 4.993028 AGGTTTATGTAAGCTTTGGGACA 58.007 39.130 3.20 2.72 41.68 4.02
4089 4323 3.840666 ACACCTGTCTGTATCTCCATTGT 59.159 43.478 0.00 0.00 0.00 2.71
4115 4349 3.445987 GACCCCCAATGGAAATTTGGTA 58.554 45.455 0.00 0.00 41.74 3.25
4116 4350 4.037222 GACCCCCAATGGAAATTTGGTAT 58.963 43.478 0.00 0.00 41.74 2.73
4144 4378 2.747989 CAAGATGATGTGCTGCTGAAGT 59.252 45.455 0.00 0.00 0.00 3.01
4167 4401 2.127708 GGACCCCCTGTTCTACATGAT 58.872 52.381 0.00 0.00 0.00 2.45
4168 4402 2.158755 GGACCCCCTGTTCTACATGATG 60.159 54.545 0.00 0.00 0.00 3.07
4203 4574 4.464008 AGATTTTTCACACTGAGCCTGAA 58.536 39.130 0.00 0.00 0.00 3.02
4219 4590 5.815581 AGCCTGAAAAATGGACATGTAGTA 58.184 37.500 0.00 0.00 0.00 1.82
4220 4591 5.882557 AGCCTGAAAAATGGACATGTAGTAG 59.117 40.000 0.00 0.00 0.00 2.57
4221 4592 5.648092 GCCTGAAAAATGGACATGTAGTAGT 59.352 40.000 0.00 0.00 0.00 2.73
4222 4593 6.151144 GCCTGAAAAATGGACATGTAGTAGTT 59.849 38.462 0.00 0.00 0.00 2.24
4223 4594 7.626452 GCCTGAAAAATGGACATGTAGTAGTTC 60.626 40.741 0.00 0.00 0.00 3.01
4236 4607 4.705507 TGTAGTAGTTCTCTAGCCCACTTG 59.294 45.833 0.00 0.00 0.00 3.16
4272 4643 0.610687 GACCTCTTCCAGACCCTGTG 59.389 60.000 0.00 0.00 0.00 3.66
4347 4732 5.944013 TGGATTTTTGCATAAATCGACGAA 58.056 33.333 26.15 12.97 42.68 3.85
4369 4754 7.019418 CGAAGCAATGTATGATTGATGGTATG 58.981 38.462 0.00 0.00 37.88 2.39
4373 4758 9.524496 AGCAATGTATGATTGATGGTATGTATT 57.476 29.630 0.00 0.00 0.00 1.89
4384 4769 6.282199 GATGGTATGTATTACTCCATCCGT 57.718 41.667 21.52 9.70 44.87 4.69
4385 4770 6.681729 ATGGTATGTATTACTCCATCCGTT 57.318 37.500 10.59 0.00 34.30 4.44
4386 4771 6.092955 TGGTATGTATTACTCCATCCGTTC 57.907 41.667 0.00 0.00 0.00 3.95
4387 4772 5.011329 TGGTATGTATTACTCCATCCGTTCC 59.989 44.000 0.00 0.00 0.00 3.62
4388 4773 5.011329 GGTATGTATTACTCCATCCGTTCCA 59.989 44.000 0.00 0.00 0.00 3.53
4389 4774 5.623956 ATGTATTACTCCATCCGTTCCAA 57.376 39.130 0.00 0.00 0.00 3.53
4390 4775 5.423704 TGTATTACTCCATCCGTTCCAAA 57.576 39.130 0.00 0.00 0.00 3.28
4391 4776 5.806818 TGTATTACTCCATCCGTTCCAAAA 58.193 37.500 0.00 0.00 0.00 2.44
4392 4777 6.419791 TGTATTACTCCATCCGTTCCAAAAT 58.580 36.000 0.00 0.00 0.00 1.82
4393 4778 7.566569 TGTATTACTCCATCCGTTCCAAAATA 58.433 34.615 0.00 0.00 0.00 1.40
4394 4779 7.713507 TGTATTACTCCATCCGTTCCAAAATAG 59.286 37.037 0.00 0.00 0.00 1.73
4395 4780 4.837093 ACTCCATCCGTTCCAAAATAGA 57.163 40.909 0.00 0.00 0.00 1.98
4396 4781 5.373812 ACTCCATCCGTTCCAAAATAGAT 57.626 39.130 0.00 0.00 0.00 1.98
4397 4782 5.126067 ACTCCATCCGTTCCAAAATAGATG 58.874 41.667 0.00 0.00 31.49 2.90
4398 4783 5.104527 ACTCCATCCGTTCCAAAATAGATGA 60.105 40.000 0.00 0.00 32.55 2.92
4399 4784 5.123227 TCCATCCGTTCCAAAATAGATGAC 58.877 41.667 0.00 0.00 32.55 3.06
4400 4785 5.104527 TCCATCCGTTCCAAAATAGATGACT 60.105 40.000 0.00 0.00 32.55 3.41
4401 4786 5.237344 CCATCCGTTCCAAAATAGATGACTC 59.763 44.000 0.00 0.00 32.55 3.36
4402 4787 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4403 4788 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4404 4789 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4405 4790 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4406 4791 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4407 4792 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4408 4793 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
4443 4828 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
4444 4829 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
4445 4830 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
4446 4831 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
4447 4832 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
4448 4833 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
4449 4834 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
4450 4835 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
4451 4836 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
4452 4837 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
4453 4838 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
4454 4839 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4455 4840 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4456 4841 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
4457 4842 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
4458 4843 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
4459 4844 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
4460 4845 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
4461 4846 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
4462 4847 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
4463 4848 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
4464 4849 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
4465 4850 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
4466 4851 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
4467 4852 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
4468 4853 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
4510 4895 3.072622 GGGGTAAGATCTAATTTCCCGCT 59.927 47.826 0.00 0.00 34.78 5.52
4526 4911 2.337532 CTGGCAGCAGCAACAACC 59.662 61.111 0.00 0.00 44.61 3.77
4535 4920 3.002862 CAGCAGCAACAACCGTTAGTAAA 59.997 43.478 0.00 0.00 32.75 2.01
4538 4923 5.470777 AGCAGCAACAACCGTTAGTAAATAA 59.529 36.000 0.00 0.00 32.75 1.40
4540 4925 6.804783 GCAGCAACAACCGTTAGTAAATAATT 59.195 34.615 0.00 0.00 32.75 1.40
4545 4930 8.943002 CAACAACCGTTAGTAAATAATTCCTCT 58.057 33.333 0.00 0.00 32.75 3.69
4548 4933 8.943002 CAACCGTTAGTAAATAATTCCTCTGTT 58.057 33.333 0.00 0.00 0.00 3.16
4577 4962 4.558538 ATTTGTCGCAGAAATGGATAGC 57.441 40.909 0.00 0.00 39.69 2.97
4586 4974 2.158755 AGAAATGGATAGCAGTTCCGGG 60.159 50.000 0.00 0.00 35.94 5.73
4591 4979 2.973180 GATAGCAGTTCCGGGCGGAC 62.973 65.000 0.00 0.00 45.11 4.79
4672 5177 6.183360 ACAATACGTATTGGCTAGAGTGACAT 60.183 38.462 37.97 18.78 45.54 3.06
4673 5178 7.013942 ACAATACGTATTGGCTAGAGTGACATA 59.986 37.037 37.97 0.00 45.54 2.29
4674 5179 5.847111 ACGTATTGGCTAGAGTGACATAA 57.153 39.130 0.00 0.00 0.00 1.90
4675 5180 6.216801 ACGTATTGGCTAGAGTGACATAAA 57.783 37.500 0.00 0.00 0.00 1.40
4677 5182 5.462398 CGTATTGGCTAGAGTGACATAAACC 59.538 44.000 0.00 0.00 0.00 3.27
4678 5183 4.901197 TTGGCTAGAGTGACATAAACCA 57.099 40.909 0.00 0.00 0.00 3.67
4679 5184 4.901197 TGGCTAGAGTGACATAAACCAA 57.099 40.909 0.00 0.00 0.00 3.67
4690 5228 4.830600 TGACATAAACCAAAGGGGAAGAAC 59.169 41.667 0.00 0.00 41.15 3.01
4694 5232 6.663523 ACATAAACCAAAGGGGAAGAACTATG 59.336 38.462 0.00 0.00 41.15 2.23
4711 5249 0.691078 ATGGATCGGCACTGTACCCT 60.691 55.000 0.00 0.00 0.00 4.34
4712 5250 1.327690 TGGATCGGCACTGTACCCTC 61.328 60.000 0.00 0.00 0.00 4.30
4713 5251 1.043673 GGATCGGCACTGTACCCTCT 61.044 60.000 0.00 0.00 0.00 3.69
4714 5252 1.688772 GATCGGCACTGTACCCTCTA 58.311 55.000 0.00 0.00 0.00 2.43
4715 5253 1.609555 GATCGGCACTGTACCCTCTAG 59.390 57.143 0.00 0.00 0.00 2.43
4717 5255 0.739561 CGGCACTGTACCCTCTAGAC 59.260 60.000 0.00 0.00 0.00 2.59
4718 5256 1.848652 GGCACTGTACCCTCTAGACA 58.151 55.000 0.00 0.00 0.00 3.41
4731 5329 9.933723 GTACCCTCTAGACAAGTAATTTAAACA 57.066 33.333 0.00 0.00 0.00 2.83
4777 5377 4.817464 ACAAAAACCAGTACGTAGCAATCA 59.183 37.500 0.00 0.00 0.00 2.57
4780 5380 3.079960 ACCAGTACGTAGCAATCATCG 57.920 47.619 0.00 0.00 0.00 3.84
4797 5397 7.511463 CAATCATCGAAGAGCAAATGATCTAG 58.489 38.462 1.05 0.25 43.63 2.43
4870 5479 7.375834 AGTACAACGATCAAGTATCAACAGAA 58.624 34.615 0.00 0.00 33.87 3.02
4885 5498 5.277250 TCAACAGAACACATAGATAGGGGA 58.723 41.667 0.00 0.00 0.00 4.81
4887 5500 5.144159 ACAGAACACATAGATAGGGGAGA 57.856 43.478 0.00 0.00 0.00 3.71
4888 5501 5.721225 ACAGAACACATAGATAGGGGAGAT 58.279 41.667 0.00 0.00 0.00 2.75
4889 5502 5.777732 ACAGAACACATAGATAGGGGAGATC 59.222 44.000 0.00 0.00 0.00 2.75
4890 5503 5.186797 CAGAACACATAGATAGGGGAGATCC 59.813 48.000 0.00 0.00 0.00 3.36
4891 5504 4.767000 ACACATAGATAGGGGAGATCCA 57.233 45.455 0.47 0.00 37.91 3.41
4892 5505 5.296909 ACACATAGATAGGGGAGATCCAT 57.703 43.478 0.47 0.00 37.91 3.41
4893 5506 5.276440 ACACATAGATAGGGGAGATCCATC 58.724 45.833 0.47 0.00 37.91 3.51
4894 5507 5.222631 ACACATAGATAGGGGAGATCCATCA 60.223 44.000 0.47 0.00 37.91 3.07
4895 5508 5.363292 CACATAGATAGGGGAGATCCATCAG 59.637 48.000 0.47 0.00 37.91 2.90
4896 5509 5.257339 ACATAGATAGGGGAGATCCATCAGA 59.743 44.000 0.47 0.00 37.91 3.27
4897 5510 4.990496 AGATAGGGGAGATCCATCAGAT 57.010 45.455 0.47 0.00 38.17 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.052229 AGTGAAGACGGGGCGACG 62.052 66.667 0.00 0.00 40.31 5.12
7 8 2.432628 CAGTGAAGACGGGGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
8 9 4.373116 GCAGTGAAGACGGGGCGA 62.373 66.667 0.00 0.00 0.00 5.54
25 26 4.944372 GATACCTCACGGGCGGCG 62.944 72.222 0.51 0.51 39.10 6.46
26 27 2.660258 ATTGATACCTCACGGGCGGC 62.660 60.000 0.00 0.00 39.10 6.53
27 28 0.880278 CATTGATACCTCACGGGCGG 60.880 60.000 0.00 0.00 39.10 6.13
28 29 0.880278 CCATTGATACCTCACGGGCG 60.880 60.000 0.00 0.00 39.10 6.13
29 30 0.468226 TCCATTGATACCTCACGGGC 59.532 55.000 0.00 0.00 39.10 6.13
30 31 1.070758 CCTCCATTGATACCTCACGGG 59.929 57.143 0.00 0.00 41.89 5.28
31 32 2.036475 CTCCTCCATTGATACCTCACGG 59.964 54.545 0.00 0.00 0.00 4.94
32 33 2.036475 CCTCCTCCATTGATACCTCACG 59.964 54.545 0.00 0.00 0.00 4.35
33 34 2.224402 GCCTCCTCCATTGATACCTCAC 60.224 54.545 0.00 0.00 0.00 3.51
34 35 2.050144 GCCTCCTCCATTGATACCTCA 58.950 52.381 0.00 0.00 0.00 3.86
35 36 2.038295 CAGCCTCCTCCATTGATACCTC 59.962 54.545 0.00 0.00 0.00 3.85
36 37 2.053244 CAGCCTCCTCCATTGATACCT 58.947 52.381 0.00 0.00 0.00 3.08
37 38 2.050144 TCAGCCTCCTCCATTGATACC 58.950 52.381 0.00 0.00 0.00 2.73
38 39 2.224402 GGTCAGCCTCCTCCATTGATAC 60.224 54.545 0.00 0.00 0.00 2.24
39 40 2.050144 GGTCAGCCTCCTCCATTGATA 58.950 52.381 0.00 0.00 0.00 2.15
40 41 0.842635 GGTCAGCCTCCTCCATTGAT 59.157 55.000 0.00 0.00 0.00 2.57
41 42 1.617018 CGGTCAGCCTCCTCCATTGA 61.617 60.000 0.00 0.00 0.00 2.57
42 43 1.153289 CGGTCAGCCTCCTCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
43 44 2.370445 CCGGTCAGCCTCCTCCATT 61.370 63.158 0.00 0.00 0.00 3.16
44 45 2.765807 CCGGTCAGCCTCCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
62 63 4.424566 AATGCCAAAGCTGCCGCG 62.425 61.111 0.00 0.00 42.32 6.46
63 64 2.567564 ATCAATGCCAAAGCTGCCGC 62.568 55.000 0.00 0.00 40.80 6.53
64 65 0.108520 AATCAATGCCAAAGCTGCCG 60.109 50.000 0.00 0.00 40.80 5.69
65 66 1.648504 GAATCAATGCCAAAGCTGCC 58.351 50.000 0.00 0.00 40.80 4.85
66 67 1.648504 GGAATCAATGCCAAAGCTGC 58.351 50.000 0.00 0.00 40.80 5.25
67 68 1.134610 GGGGAATCAATGCCAAAGCTG 60.135 52.381 0.00 0.00 42.44 4.24
68 69 1.197812 GGGGAATCAATGCCAAAGCT 58.802 50.000 0.00 0.00 42.44 3.74
69 70 0.178767 GGGGGAATCAATGCCAAAGC 59.821 55.000 0.00 0.00 42.44 3.51
70 71 0.461135 CGGGGGAATCAATGCCAAAG 59.539 55.000 0.00 0.00 42.44 2.77
71 72 1.612395 GCGGGGGAATCAATGCCAAA 61.612 55.000 0.00 0.00 42.44 3.28
72 73 2.057408 GCGGGGGAATCAATGCCAA 61.057 57.895 0.00 0.00 42.44 4.52
73 74 2.441901 GCGGGGGAATCAATGCCA 60.442 61.111 0.00 0.00 42.44 4.92
74 75 3.595758 CGCGGGGGAATCAATGCC 61.596 66.667 0.00 0.00 39.22 4.40
75 76 3.595758 CCGCGGGGGAATCAATGC 61.596 66.667 20.10 0.00 38.47 3.56
97 98 4.477975 GTCGTCCTCACCGCCTCG 62.478 72.222 0.00 0.00 0.00 4.63
98 99 4.477975 CGTCGTCCTCACCGCCTC 62.478 72.222 0.00 0.00 0.00 4.70
100 101 3.966026 CTTCGTCGTCCTCACCGCC 62.966 68.421 0.00 0.00 0.00 6.13
101 102 2.504244 CTTCGTCGTCCTCACCGC 60.504 66.667 0.00 0.00 0.00 5.68
102 103 2.504244 GCTTCGTCGTCCTCACCG 60.504 66.667 0.00 0.00 0.00 4.94
103 104 2.504244 CGCTTCGTCGTCCTCACC 60.504 66.667 0.00 0.00 0.00 4.02
104 105 1.796749 GTCGCTTCGTCGTCCTCAC 60.797 63.158 0.00 0.00 0.00 3.51
105 106 2.559840 GTCGCTTCGTCGTCCTCA 59.440 61.111 0.00 0.00 0.00 3.86
106 107 2.573689 CGTCGCTTCGTCGTCCTC 60.574 66.667 0.00 0.00 34.30 3.71
107 108 3.024782 CTCGTCGCTTCGTCGTCCT 62.025 63.158 5.88 0.00 39.12 3.85
108 109 2.504461 TTCTCGTCGCTTCGTCGTCC 62.504 60.000 5.88 0.00 39.12 4.79
109 110 1.121281 CTTCTCGTCGCTTCGTCGTC 61.121 60.000 5.88 0.00 39.12 4.20
110 111 1.154450 CTTCTCGTCGCTTCGTCGT 60.154 57.895 5.88 0.00 39.12 4.34
111 112 0.854037 CTCTTCTCGTCGCTTCGTCG 60.854 60.000 0.00 0.00 39.38 5.12
112 113 1.129301 GCTCTTCTCGTCGCTTCGTC 61.129 60.000 0.00 0.00 0.00 4.20
113 114 1.154188 GCTCTTCTCGTCGCTTCGT 60.154 57.895 0.00 0.00 0.00 3.85
114 115 1.870016 GGCTCTTCTCGTCGCTTCG 60.870 63.158 0.00 0.00 0.00 3.79
115 116 1.870016 CGGCTCTTCTCGTCGCTTC 60.870 63.158 0.00 0.00 0.00 3.86
116 117 2.179517 CGGCTCTTCTCGTCGCTT 59.820 61.111 0.00 0.00 0.00 4.68
117 118 2.746671 TCGGCTCTTCTCGTCGCT 60.747 61.111 0.00 0.00 0.00 4.93
118 119 2.277628 CTCGGCTCTTCTCGTCGC 60.278 66.667 0.00 0.00 0.00 5.19
119 120 1.061253 GACTCGGCTCTTCTCGTCG 59.939 63.158 0.00 0.00 0.00 5.12
120 121 1.061253 CGACTCGGCTCTTCTCGTC 59.939 63.158 0.00 0.00 0.00 4.20
121 122 3.041627 GCGACTCGGCTCTTCTCGT 62.042 63.158 0.00 0.00 0.00 4.18
122 123 2.277628 GCGACTCGGCTCTTCTCG 60.278 66.667 0.00 0.00 0.00 4.04
123 124 1.226547 CAGCGACTCGGCTCTTCTC 60.227 63.158 0.00 0.00 42.53 2.87
124 125 2.881389 CAGCGACTCGGCTCTTCT 59.119 61.111 0.00 0.00 42.53 2.85
125 126 2.883253 GCAGCGACTCGGCTCTTC 60.883 66.667 0.00 0.00 42.53 2.87
126 127 4.443266 GGCAGCGACTCGGCTCTT 62.443 66.667 0.00 0.00 42.53 2.85
128 129 4.742201 TTGGCAGCGACTCGGCTC 62.742 66.667 0.00 0.00 42.53 4.70
131 132 4.717629 TCGTTGGCAGCGACTCGG 62.718 66.667 22.57 0.00 33.09 4.63
132 133 3.175240 CTCGTTGGCAGCGACTCG 61.175 66.667 22.57 9.62 34.47 4.18
133 134 2.811317 CCTCGTTGGCAGCGACTC 60.811 66.667 22.57 0.00 34.47 3.36
134 135 4.379243 CCCTCGTTGGCAGCGACT 62.379 66.667 22.57 0.00 34.47 4.18
147 148 3.209812 GAAAATCGGCGGGCCCTC 61.210 66.667 22.43 13.01 0.00 4.30
153 154 2.299294 TTTAGCGCGAAAATCGGCGG 62.299 55.000 12.10 0.00 40.84 6.13
154 155 0.519586 TTTTAGCGCGAAAATCGGCG 60.520 50.000 22.12 0.00 40.84 6.46
155 156 1.316443 GTTTTTAGCGCGAAAATCGGC 59.684 47.619 25.52 14.08 40.84 5.54
156 157 1.571402 CGTTTTTAGCGCGAAAATCGG 59.429 47.619 32.90 21.93 40.84 4.18
157 158 2.488081 TCGTTTTTAGCGCGAAAATCG 58.512 42.857 33.85 33.85 43.89 3.34
158 159 4.314812 CGAATCGTTTTTAGCGCGAAAATC 60.315 41.667 25.52 22.64 38.17 2.17
159 160 3.536837 CGAATCGTTTTTAGCGCGAAAAT 59.463 39.130 25.52 12.83 38.17 1.82
160 161 2.897620 CGAATCGTTTTTAGCGCGAAAA 59.102 40.909 22.12 22.12 38.17 2.29
161 162 2.488081 CGAATCGTTTTTAGCGCGAAA 58.512 42.857 12.10 11.86 38.17 3.46
162 163 1.201834 CCGAATCGTTTTTAGCGCGAA 60.202 47.619 12.10 0.00 38.17 4.70
163 164 0.367548 CCGAATCGTTTTTAGCGCGA 59.632 50.000 12.10 0.00 39.02 5.87
164 165 1.185733 GCCGAATCGTTTTTAGCGCG 61.186 55.000 0.00 0.00 0.00 6.86
165 166 0.860203 GGCCGAATCGTTTTTAGCGC 60.860 55.000 0.00 0.00 0.00 5.92
166 167 0.585519 CGGCCGAATCGTTTTTAGCG 60.586 55.000 24.07 0.00 0.00 4.26
167 168 0.247934 CCGGCCGAATCGTTTTTAGC 60.248 55.000 30.73 0.00 0.00 3.09
168 169 0.247934 GCCGGCCGAATCGTTTTTAG 60.248 55.000 30.73 5.91 0.00 1.85
169 170 1.795507 GCCGGCCGAATCGTTTTTA 59.204 52.632 30.73 0.00 0.00 1.52
170 171 2.564458 GCCGGCCGAATCGTTTTT 59.436 55.556 30.73 0.00 0.00 1.94
171 172 3.795342 CGCCGGCCGAATCGTTTT 61.795 61.111 30.73 0.00 40.02 2.43
228 229 4.834892 CTGAAATTGGCGCCGGCG 62.835 66.667 43.13 43.13 41.24 6.46
230 231 4.496927 GGCTGAAATTGGCGCCGG 62.497 66.667 23.90 0.00 32.22 6.13
231 232 4.496927 GGGCTGAAATTGGCGCCG 62.497 66.667 23.90 6.39 43.38 6.46
232 233 2.840717 CTTGGGCTGAAATTGGCGCC 62.841 60.000 22.73 22.73 40.02 6.53
233 234 1.446618 CTTGGGCTGAAATTGGCGC 60.447 57.895 0.00 0.00 40.92 6.53
234 235 1.446618 GCTTGGGCTGAAATTGGCG 60.447 57.895 0.00 0.00 35.22 5.69
235 236 1.078918 GGCTTGGGCTGAAATTGGC 60.079 57.895 0.00 0.00 38.73 4.52
259 260 1.602377 CGCGTCCTCAAAGACCTTTTT 59.398 47.619 0.00 0.00 32.91 1.94
260 261 1.202604 TCGCGTCCTCAAAGACCTTTT 60.203 47.619 5.77 0.00 32.91 2.27
261 262 0.391597 TCGCGTCCTCAAAGACCTTT 59.608 50.000 5.77 0.00 32.91 3.11
262 263 0.319641 GTCGCGTCCTCAAAGACCTT 60.320 55.000 5.77 0.00 32.91 3.50
263 264 1.179814 AGTCGCGTCCTCAAAGACCT 61.180 55.000 5.77 0.00 32.91 3.85
264 265 1.009389 CAGTCGCGTCCTCAAAGACC 61.009 60.000 5.77 0.00 32.91 3.85
265 266 1.009389 CCAGTCGCGTCCTCAAAGAC 61.009 60.000 5.77 0.00 0.00 3.01
266 267 1.289066 CCAGTCGCGTCCTCAAAGA 59.711 57.895 5.77 0.00 0.00 2.52
267 268 1.738099 CCCAGTCGCGTCCTCAAAG 60.738 63.158 5.77 0.00 0.00 2.77
268 269 2.342279 CCCAGTCGCGTCCTCAAA 59.658 61.111 5.77 0.00 0.00 2.69
269 270 4.373116 GCCCAGTCGCGTCCTCAA 62.373 66.667 5.77 0.00 0.00 3.02
274 275 4.814294 AATCGGCCCAGTCGCGTC 62.814 66.667 5.77 0.00 0.00 5.19
275 276 3.894547 AAAATCGGCCCAGTCGCGT 62.895 57.895 5.77 0.00 0.00 6.01
276 277 2.577763 GAAAAATCGGCCCAGTCGCG 62.578 60.000 0.00 0.00 0.00 5.87
277 278 1.136774 GAAAAATCGGCCCAGTCGC 59.863 57.895 0.00 0.00 0.00 5.19
278 279 1.017177 TCGAAAAATCGGCCCAGTCG 61.017 55.000 0.00 0.00 0.00 4.18
279 280 0.446616 GTCGAAAAATCGGCCCAGTC 59.553 55.000 0.00 0.00 0.00 3.51
280 281 1.296056 CGTCGAAAAATCGGCCCAGT 61.296 55.000 0.00 0.00 33.73 4.00
281 282 1.423845 CGTCGAAAAATCGGCCCAG 59.576 57.895 0.00 0.00 33.73 4.45
282 283 2.682876 GCGTCGAAAAATCGGCCCA 61.683 57.895 0.00 0.00 33.73 5.36
283 284 2.099638 GCGTCGAAAAATCGGCCC 59.900 61.111 0.00 0.00 33.73 5.80
284 285 2.099638 GGCGTCGAAAAATCGGCC 59.900 61.111 7.57 0.00 42.65 6.13
285 286 2.276430 CGGCGTCGAAAAATCGGC 60.276 61.111 1.44 8.59 44.41 5.54
286 287 2.020836 CTCCGGCGTCGAAAAATCGG 62.021 60.000 12.93 7.36 39.00 4.18
287 288 1.343821 CTCCGGCGTCGAAAAATCG 59.656 57.895 12.93 0.00 39.00 3.34
288 289 1.713830 CCTCCGGCGTCGAAAAATC 59.286 57.895 12.93 0.00 39.00 2.17
289 290 2.396157 GCCTCCGGCGTCGAAAAAT 61.396 57.895 12.93 0.00 39.62 1.82
290 291 3.045492 GCCTCCGGCGTCGAAAAA 61.045 61.111 12.93 0.00 39.62 1.94
310 311 3.222603 ACAAGGTCTTCAGGCGATTTTT 58.777 40.909 0.00 0.00 0.00 1.94
311 312 2.863809 ACAAGGTCTTCAGGCGATTTT 58.136 42.857 0.00 0.00 0.00 1.82
312 313 2.554032 CAACAAGGTCTTCAGGCGATTT 59.446 45.455 0.00 0.00 0.00 2.17
313 314 2.154462 CAACAAGGTCTTCAGGCGATT 58.846 47.619 0.00 0.00 0.00 3.34
314 315 1.347707 TCAACAAGGTCTTCAGGCGAT 59.652 47.619 0.00 0.00 0.00 4.58
315 316 0.756294 TCAACAAGGTCTTCAGGCGA 59.244 50.000 0.00 0.00 0.00 5.54
316 317 1.151668 CTCAACAAGGTCTTCAGGCG 58.848 55.000 0.00 0.00 0.00 5.52
317 318 1.528129 CCTCAACAAGGTCTTCAGGC 58.472 55.000 0.00 0.00 40.67 4.85
318 319 1.884067 GCCCTCAACAAGGTCTTCAGG 60.884 57.143 0.00 0.00 44.56 3.86
319 320 1.528129 GCCCTCAACAAGGTCTTCAG 58.472 55.000 0.00 0.00 44.56 3.02
320 321 0.250295 CGCCCTCAACAAGGTCTTCA 60.250 55.000 0.00 0.00 44.56 3.02
321 322 1.578206 GCGCCCTCAACAAGGTCTTC 61.578 60.000 0.00 0.00 44.56 2.87
322 323 1.600916 GCGCCCTCAACAAGGTCTT 60.601 57.895 0.00 0.00 44.56 3.01
323 324 2.032681 GCGCCCTCAACAAGGTCT 59.967 61.111 0.00 0.00 44.56 3.85
324 325 3.423154 CGCGCCCTCAACAAGGTC 61.423 66.667 0.00 0.00 44.56 3.85
348 349 3.991121 GCCGGAAGATAACTTAGAGCATC 59.009 47.826 5.05 0.00 36.39 3.91
349 350 3.553096 CGCCGGAAGATAACTTAGAGCAT 60.553 47.826 5.05 0.00 36.39 3.79
350 351 2.223735 CGCCGGAAGATAACTTAGAGCA 60.224 50.000 5.05 0.00 36.39 4.26
351 352 2.395654 CGCCGGAAGATAACTTAGAGC 58.604 52.381 5.05 0.00 36.39 4.09
352 353 2.034812 AGCGCCGGAAGATAACTTAGAG 59.965 50.000 5.05 0.00 36.39 2.43
353 354 2.029623 AGCGCCGGAAGATAACTTAGA 58.970 47.619 5.05 0.00 36.39 2.10
354 355 2.223735 TGAGCGCCGGAAGATAACTTAG 60.224 50.000 5.05 0.00 36.39 2.18
355 356 1.752498 TGAGCGCCGGAAGATAACTTA 59.248 47.619 5.05 0.00 36.39 2.24
356 357 0.535335 TGAGCGCCGGAAGATAACTT 59.465 50.000 5.05 0.00 39.24 2.66
357 358 0.535335 TTGAGCGCCGGAAGATAACT 59.465 50.000 5.05 0.00 0.00 2.24
358 359 1.261619 CATTGAGCGCCGGAAGATAAC 59.738 52.381 5.05 0.00 0.00 1.89
359 360 1.138069 TCATTGAGCGCCGGAAGATAA 59.862 47.619 5.05 0.00 0.00 1.75
360 361 0.750249 TCATTGAGCGCCGGAAGATA 59.250 50.000 5.05 0.00 0.00 1.98
361 362 0.531532 CTCATTGAGCGCCGGAAGAT 60.532 55.000 5.05 0.00 0.00 2.40
362 363 1.153568 CTCATTGAGCGCCGGAAGA 60.154 57.895 5.05 0.00 0.00 2.87
363 364 2.176273 CCTCATTGAGCGCCGGAAG 61.176 63.158 5.05 0.00 0.00 3.46
364 365 2.125147 CCTCATTGAGCGCCGGAA 60.125 61.111 5.05 0.00 0.00 4.30
365 366 4.161295 CCCTCATTGAGCGCCGGA 62.161 66.667 5.05 0.00 0.00 5.14
368 369 4.802051 TGCCCCTCATTGAGCGCC 62.802 66.667 2.29 0.00 0.00 6.53
369 370 3.512516 GTGCCCCTCATTGAGCGC 61.513 66.667 8.23 11.66 0.00 5.92
370 371 3.197790 CGTGCCCCTCATTGAGCG 61.198 66.667 8.23 0.00 0.00 5.03
371 372 0.960364 TTTCGTGCCCCTCATTGAGC 60.960 55.000 8.23 0.00 0.00 4.26
372 373 1.533625 TTTTCGTGCCCCTCATTGAG 58.466 50.000 6.70 6.70 0.00 3.02
373 374 1.885887 CTTTTTCGTGCCCCTCATTGA 59.114 47.619 0.00 0.00 0.00 2.57
374 375 1.067635 CCTTTTTCGTGCCCCTCATTG 60.068 52.381 0.00 0.00 0.00 2.82
375 376 1.256812 CCTTTTTCGTGCCCCTCATT 58.743 50.000 0.00 0.00 0.00 2.57
376 377 0.611896 CCCTTTTTCGTGCCCCTCAT 60.612 55.000 0.00 0.00 0.00 2.90
377 378 1.228429 CCCTTTTTCGTGCCCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
378 379 0.037160 TACCCTTTTTCGTGCCCCTC 59.963 55.000 0.00 0.00 0.00 4.30
379 380 0.702316 ATACCCTTTTTCGTGCCCCT 59.298 50.000 0.00 0.00 0.00 4.79
380 381 0.815095 CATACCCTTTTTCGTGCCCC 59.185 55.000 0.00 0.00 0.00 5.80
381 382 0.815095 CCATACCCTTTTTCGTGCCC 59.185 55.000 0.00 0.00 0.00 5.36
382 383 0.172578 GCCATACCCTTTTTCGTGCC 59.827 55.000 0.00 0.00 0.00 5.01
383 384 0.885196 TGCCATACCCTTTTTCGTGC 59.115 50.000 0.00 0.00 0.00 5.34
384 385 1.472480 CCTGCCATACCCTTTTTCGTG 59.528 52.381 0.00 0.00 0.00 4.35
385 386 1.834188 CCTGCCATACCCTTTTTCGT 58.166 50.000 0.00 0.00 0.00 3.85
386 387 0.455815 GCCTGCCATACCCTTTTTCG 59.544 55.000 0.00 0.00 0.00 3.46
387 388 0.455815 CGCCTGCCATACCCTTTTTC 59.544 55.000 0.00 0.00 0.00 2.29
388 389 0.039035 TCGCCTGCCATACCCTTTTT 59.961 50.000 0.00 0.00 0.00 1.94
389 390 0.258774 ATCGCCTGCCATACCCTTTT 59.741 50.000 0.00 0.00 0.00 2.27
390 391 0.466189 CATCGCCTGCCATACCCTTT 60.466 55.000 0.00 0.00 0.00 3.11
391 392 1.149174 CATCGCCTGCCATACCCTT 59.851 57.895 0.00 0.00 0.00 3.95
392 393 2.831770 CATCGCCTGCCATACCCT 59.168 61.111 0.00 0.00 0.00 4.34
393 394 2.980233 GCATCGCCTGCCATACCC 60.980 66.667 0.00 0.00 45.66 3.69
401 402 2.031616 ATGGGATCGCATCGCCTG 59.968 61.111 18.86 0.00 41.11 4.85
402 403 1.471829 TACATGGGATCGCATCGCCT 61.472 55.000 21.42 7.87 41.11 5.52
403 404 1.005037 TACATGGGATCGCATCGCC 60.005 57.895 21.42 0.00 41.11 5.54
404 405 0.319900 AGTACATGGGATCGCATCGC 60.320 55.000 21.42 14.03 42.05 4.58
405 406 1.269778 ACAGTACATGGGATCGCATCG 60.270 52.381 21.42 17.97 0.00 3.84
406 407 2.138320 CACAGTACATGGGATCGCATC 58.862 52.381 21.42 11.39 32.10 3.91
407 408 1.762370 TCACAGTACATGGGATCGCAT 59.238 47.619 18.86 18.86 36.00 4.73
408 409 1.136891 CTCACAGTACATGGGATCGCA 59.863 52.381 15.52 15.52 41.69 5.10
409 410 1.539065 CCTCACAGTACATGGGATCGC 60.539 57.143 2.14 2.14 41.69 4.58
410 411 1.539065 GCCTCACAGTACATGGGATCG 60.539 57.143 0.00 0.00 41.69 3.69
411 412 1.486310 TGCCTCACAGTACATGGGATC 59.514 52.381 0.00 0.00 41.69 3.36
412 413 1.487976 CTGCCTCACAGTACATGGGAT 59.512 52.381 0.00 0.00 41.69 3.85
413 414 0.904649 CTGCCTCACAGTACATGGGA 59.095 55.000 0.00 0.00 39.74 4.37
414 415 3.465990 CTGCCTCACAGTACATGGG 57.534 57.895 0.00 0.00 41.86 4.00
423 424 7.715249 GGTGAATTATAATAACTCTGCCTCACA 59.285 37.037 16.86 0.00 32.00 3.58
424 425 7.095607 CGGTGAATTATAATAACTCTGCCTCAC 60.096 40.741 10.58 10.58 0.00 3.51
425 426 6.929049 CGGTGAATTATAATAACTCTGCCTCA 59.071 38.462 0.00 0.00 0.00 3.86
426 427 6.929606 ACGGTGAATTATAATAACTCTGCCTC 59.070 38.462 0.00 0.00 0.00 4.70
427 428 6.706270 CACGGTGAATTATAATAACTCTGCCT 59.294 38.462 0.74 0.00 0.00 4.75
428 429 6.704493 TCACGGTGAATTATAATAACTCTGCC 59.296 38.462 8.68 0.50 0.00 4.85
429 430 7.709269 TCACGGTGAATTATAATAACTCTGC 57.291 36.000 8.68 0.00 0.00 4.26
430 431 8.223769 GCATCACGGTGAATTATAATAACTCTG 58.776 37.037 15.72 4.71 0.00 3.35
431 432 7.387948 GGCATCACGGTGAATTATAATAACTCT 59.612 37.037 15.72 0.00 0.00 3.24
435 436 6.146510 GTCGGCATCACGGTGAATTATAATAA 59.853 38.462 15.72 0.00 0.00 1.40
457 458 1.201647 ACAGTACACTTGGGATCGTCG 59.798 52.381 0.00 0.00 0.00 5.12
459 460 4.817517 CTTAACAGTACACTTGGGATCGT 58.182 43.478 0.00 0.00 0.00 3.73
521 526 2.205911 GCCTACTTTTCTCCATCTCGC 58.794 52.381 0.00 0.00 0.00 5.03
539 544 2.292794 TAATCTCACTCGGCCGTGCC 62.293 60.000 27.15 4.96 46.75 5.01
540 545 0.459585 TTAATCTCACTCGGCCGTGC 60.460 55.000 27.15 0.00 34.92 5.34
546 551 6.255887 ACGCTTCTATTTTTAATCTCACTCGG 59.744 38.462 0.00 0.00 0.00 4.63
566 571 1.346395 TGGAGATGTTGTACCACGCTT 59.654 47.619 0.00 0.00 0.00 4.68
594 599 4.740822 ACGGGCAATGGGAGTGGC 62.741 66.667 0.00 0.00 40.67 5.01
610 615 1.002011 GCTCCCTCCCTCCAAACAC 60.002 63.158 0.00 0.00 0.00 3.32
897 921 1.949449 AGAGAGGGTGGGAGGGGAT 60.949 63.158 0.00 0.00 0.00 3.85
899 923 2.041405 GAGAGAGGGTGGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
1110 1156 4.093952 GACGACGCCGAGGACGAA 62.094 66.667 0.00 0.00 42.66 3.85
1152 1198 4.162690 GGCTCCATCGTCGGGCTT 62.163 66.667 0.00 0.00 0.00 4.35
1372 1418 3.679083 GCTAGCTAGAAATCAACCGTGGT 60.679 47.826 25.15 0.00 0.00 4.16
1373 1419 2.866762 GCTAGCTAGAAATCAACCGTGG 59.133 50.000 25.15 0.00 0.00 4.94
1375 1421 2.165845 ACGCTAGCTAGAAATCAACCGT 59.834 45.455 25.15 17.29 0.00 4.83
1376 1422 2.535984 CACGCTAGCTAGAAATCAACCG 59.464 50.000 25.15 16.66 0.00 4.44
1377 1423 3.782046 TCACGCTAGCTAGAAATCAACC 58.218 45.455 25.15 2.88 0.00 3.77
1417 1472 1.256376 CGGAGCAATTCATTCGTCGAG 59.744 52.381 0.00 0.00 0.00 4.04
1635 1701 7.718314 TGATATGAAATTGAGTGATTAGCTGCT 59.282 33.333 7.57 7.57 0.00 4.24
1636 1702 7.868775 TGATATGAAATTGAGTGATTAGCTGC 58.131 34.615 0.00 0.00 0.00 5.25
1656 1722 9.754382 CGAAATGGAAATGGAAAGATTTGATAT 57.246 29.630 0.00 0.00 0.00 1.63
1698 1764 4.100084 CGCACCATCAGGGCCAGA 62.100 66.667 6.18 2.67 42.05 3.86
1708 1774 4.523083 TCCTTTAATTTAGCTCGCACCAT 58.477 39.130 0.00 0.00 0.00 3.55
1710 1776 4.957759 TTCCTTTAATTTAGCTCGCACC 57.042 40.909 0.00 0.00 0.00 5.01
1752 1818 8.421784 GGTGATGTACTCTCATTTATTAGACCA 58.578 37.037 0.00 0.00 0.00 4.02
1942 2020 5.854010 ACTCATTGCGAGGTCTAAGATTA 57.146 39.130 0.00 0.00 46.98 1.75
2194 2302 1.227823 CACCTGGCGTGAAGGAACA 60.228 57.895 7.11 0.00 46.20 3.18
2276 2385 6.035368 TGCAAACAGCCATACATAAACAAT 57.965 33.333 0.00 0.00 44.83 2.71
2285 2394 3.691118 TCTCTTGATGCAAACAGCCATAC 59.309 43.478 0.00 0.00 44.83 2.39
2346 2456 6.183360 ACCTCCAAAGCAACATAAACAATCAA 60.183 34.615 0.00 0.00 0.00 2.57
2372 2482 8.211629 ACTTCTTCACTAACCATTCTTTGTAGT 58.788 33.333 0.00 0.00 0.00 2.73
2569 2746 0.816825 CCGGGATGTTCATCAGCAGG 60.817 60.000 13.64 7.56 33.66 4.85
2638 2815 8.777865 TCAATCTCGTAAACAATTCAGAGAAT 57.222 30.769 0.00 0.00 35.91 2.40
2679 2856 4.436852 CGACAGCGGTAACAAATTAGCAAT 60.437 41.667 0.00 0.00 38.48 3.56
3036 3229 8.194104 GTCATGTGAGATCTCAGTAATGTAGTT 58.806 37.037 25.76 0.00 40.75 2.24
3183 3376 8.394971 TCAGATCAACAATGTTGTACTCATTT 57.605 30.769 23.41 4.33 41.31 2.32
3186 3379 7.216494 TCTTCAGATCAACAATGTTGTACTCA 58.784 34.615 23.41 9.73 41.31 3.41
3564 3798 2.814604 TCCTCGATGCGGGACATG 59.185 61.111 0.00 0.00 39.84 3.21
3591 3825 4.631740 TGGGTGAGGGAGTCGGCA 62.632 66.667 0.00 0.00 0.00 5.69
3759 3993 1.221566 CATGGTCTCGATGGTGCCA 59.778 57.895 0.00 0.00 0.00 4.92
3825 4059 0.250513 ACCTCTTGGTGCCGATCTTC 59.749 55.000 0.00 0.00 46.51 2.87
3885 4119 4.219507 CACTAGTGTCTAGATATGGGGCTG 59.780 50.000 15.06 0.00 0.00 4.85
3941 4175 3.341629 CCACCCCATGCACCTCCT 61.342 66.667 0.00 0.00 0.00 3.69
3947 4181 3.671410 CTTCCCCCACCCCATGCA 61.671 66.667 0.00 0.00 0.00 3.96
3948 4182 3.346734 TCTTCCCCCACCCCATGC 61.347 66.667 0.00 0.00 0.00 4.06
3949 4183 1.583784 ATGTCTTCCCCCACCCCATG 61.584 60.000 0.00 0.00 0.00 3.66
3950 4184 0.047176 TATGTCTTCCCCCACCCCAT 59.953 55.000 0.00 0.00 0.00 4.00
3988 4222 8.476657 TGAACACATATTTACATGCATTTTGG 57.523 30.769 0.00 0.00 0.00 3.28
3989 4223 9.356433 TCTGAACACATATTTACATGCATTTTG 57.644 29.630 0.00 0.00 0.00 2.44
3990 4224 9.577110 CTCTGAACACATATTTACATGCATTTT 57.423 29.630 0.00 0.00 0.00 1.82
3996 4230 8.186163 ACAATGCTCTGAACACATATTTACATG 58.814 33.333 0.00 0.00 0.00 3.21
4064 4298 1.757699 GGAGATACAGACAGGTGTCCC 59.242 57.143 6.50 0.00 45.85 4.46
4069 4303 3.840666 ACACAATGGAGATACAGACAGGT 59.159 43.478 0.00 0.00 0.00 4.00
4089 4323 0.478942 TTTCCATTGGGGGTCGAACA 59.521 50.000 1.31 0.00 37.22 3.18
4115 4349 1.753141 GCACATCATCTTGGCCTCCAT 60.753 52.381 3.32 0.00 31.53 3.41
4116 4350 0.394762 GCACATCATCTTGGCCTCCA 60.395 55.000 3.32 0.00 0.00 3.86
4144 4378 0.104882 TGTAGAACAGGGGGTCCACA 60.105 55.000 0.00 0.00 34.83 4.17
4203 4574 7.982354 GCTAGAGAACTACTACATGTCCATTTT 59.018 37.037 0.00 0.00 0.00 1.82
4219 4590 5.520751 AGTATACAAGTGGGCTAGAGAACT 58.479 41.667 5.50 0.00 0.00 3.01
4220 4591 5.855740 AGTATACAAGTGGGCTAGAGAAC 57.144 43.478 5.50 0.00 0.00 3.01
4221 4592 6.670617 ACTAGTATACAAGTGGGCTAGAGAA 58.329 40.000 5.50 0.00 32.64 2.87
4222 4593 6.263412 ACTAGTATACAAGTGGGCTAGAGA 57.737 41.667 5.50 0.00 32.64 3.10
4223 4594 6.963083 AACTAGTATACAAGTGGGCTAGAG 57.037 41.667 5.50 0.00 32.64 2.43
4236 4607 8.412456 GGAAGAGGTCAAGGTTAACTAGTATAC 58.588 40.741 5.42 0.00 0.00 1.47
4272 4643 5.612276 CGCTTAACAAACATTGCATGGAAAC 60.612 40.000 2.94 0.00 33.60 2.78
4304 4675 5.496556 TCCAACTGACATTATAACACTGGG 58.503 41.667 0.00 0.00 0.00 4.45
4347 4732 9.524496 AATACATACCATCAATCATACATTGCT 57.476 29.630 0.00 0.00 0.00 3.91
4369 4754 6.937436 ATTTTGGAACGGATGGAGTAATAC 57.063 37.500 0.00 0.00 0.00 1.89
4373 4758 5.943349 TCTATTTTGGAACGGATGGAGTA 57.057 39.130 0.00 0.00 0.00 2.59
4374 4759 4.837093 TCTATTTTGGAACGGATGGAGT 57.163 40.909 0.00 0.00 0.00 3.85
4375 4760 5.237344 GTCATCTATTTTGGAACGGATGGAG 59.763 44.000 0.00 0.00 32.58 3.86
4376 4761 5.104527 AGTCATCTATTTTGGAACGGATGGA 60.105 40.000 0.00 0.00 32.58 3.41
4377 4762 5.126067 AGTCATCTATTTTGGAACGGATGG 58.874 41.667 0.00 0.00 32.58 3.51
4378 4763 5.817296 TGAGTCATCTATTTTGGAACGGATG 59.183 40.000 0.00 0.00 32.78 3.51
4379 4764 5.989477 TGAGTCATCTATTTTGGAACGGAT 58.011 37.500 0.00 0.00 0.00 4.18
4380 4765 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4381 4766 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4382 4767 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4417 4802 9.328845 CCCAACTTTGTACTAACTTTGTACTAA 57.671 33.333 12.73 10.75 40.44 2.24
4418 4803 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
4419 4804 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
4420 4805 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
4421 4806 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
4422 4807 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
4423 4808 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
4424 4809 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
4425 4810 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
4426 4811 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
4427 4812 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
4428 4813 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4429 4814 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4430 4815 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
4431 4816 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
4432 4817 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
4433 4818 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
4434 4819 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
4435 4820 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
4436 4821 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
4437 4822 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
4438 4823 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
4439 4824 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
4440 4825 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
4441 4826 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
4442 4827 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
4443 4828 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
4444 4829 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
4445 4830 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
4446 4831 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
4447 4832 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
4448 4833 5.811100 GTCTACTCCCTCCGTTTCAAAATAG 59.189 44.000 0.00 0.00 0.00 1.73
4449 4834 5.246656 TGTCTACTCCCTCCGTTTCAAAATA 59.753 40.000 0.00 0.00 0.00 1.40
4450 4835 4.041198 TGTCTACTCCCTCCGTTTCAAAAT 59.959 41.667 0.00 0.00 0.00 1.82
4451 4836 3.388676 TGTCTACTCCCTCCGTTTCAAAA 59.611 43.478 0.00 0.00 0.00 2.44
4452 4837 2.967201 TGTCTACTCCCTCCGTTTCAAA 59.033 45.455 0.00 0.00 0.00 2.69
4453 4838 2.600790 TGTCTACTCCCTCCGTTTCAA 58.399 47.619 0.00 0.00 0.00 2.69
4454 4839 2.297698 TGTCTACTCCCTCCGTTTCA 57.702 50.000 0.00 0.00 0.00 2.69
4455 4840 3.889520 AATGTCTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
4456 4841 4.381292 CGTTAATGTCTACTCCCTCCGTTT 60.381 45.833 0.00 0.00 0.00 3.60
4457 4842 3.129988 CGTTAATGTCTACTCCCTCCGTT 59.870 47.826 0.00 0.00 0.00 4.44
4458 4843 2.686915 CGTTAATGTCTACTCCCTCCGT 59.313 50.000 0.00 0.00 0.00 4.69
4459 4844 2.947652 TCGTTAATGTCTACTCCCTCCG 59.052 50.000 0.00 0.00 0.00 4.63
4460 4845 4.996788 TTCGTTAATGTCTACTCCCTCC 57.003 45.455 0.00 0.00 0.00 4.30
4461 4846 5.717119 TGTTTCGTTAATGTCTACTCCCTC 58.283 41.667 0.00 0.00 0.00 4.30
4462 4847 5.733620 TGTTTCGTTAATGTCTACTCCCT 57.266 39.130 0.00 0.00 0.00 4.20
4463 4848 5.930569 ACTTGTTTCGTTAATGTCTACTCCC 59.069 40.000 0.00 0.00 0.00 4.30
4464 4849 6.128634 CCACTTGTTTCGTTAATGTCTACTCC 60.129 42.308 0.00 0.00 0.00 3.85
4465 4850 6.128634 CCCACTTGTTTCGTTAATGTCTACTC 60.129 42.308 0.00 0.00 0.00 2.59
4466 4851 5.699458 CCCACTTGTTTCGTTAATGTCTACT 59.301 40.000 0.00 0.00 0.00 2.57
4467 4852 5.106830 CCCCACTTGTTTCGTTAATGTCTAC 60.107 44.000 0.00 0.00 0.00 2.59
4468 4853 4.998672 CCCCACTTGTTTCGTTAATGTCTA 59.001 41.667 0.00 0.00 0.00 2.59
4510 4895 3.594775 CGGTTGTTGCTGCTGCCA 61.595 61.111 13.47 0.00 38.71 4.92
4526 4911 9.582431 TCAGAACAGAGGAATTATTTACTAACG 57.418 33.333 0.00 0.00 0.00 3.18
4538 4923 7.414540 GCGACAAATAATTCAGAACAGAGGAAT 60.415 37.037 0.00 0.00 32.90 3.01
4540 4925 5.351465 GCGACAAATAATTCAGAACAGAGGA 59.649 40.000 0.00 0.00 0.00 3.71
4545 4930 6.552859 TTCTGCGACAAATAATTCAGAACA 57.447 33.333 0.00 0.00 36.15 3.18
4548 4933 6.374053 TCCATTTCTGCGACAAATAATTCAGA 59.626 34.615 0.00 0.00 0.00 3.27
4586 4974 1.829533 TACATACTCCCCCGTCCGC 60.830 63.158 0.00 0.00 0.00 5.54
4591 4979 0.101759 CACACGTACATACTCCCCCG 59.898 60.000 0.00 0.00 0.00 5.73
4592 4980 0.179092 GCACACGTACATACTCCCCC 60.179 60.000 0.00 0.00 0.00 5.40
4593 4981 0.533491 TGCACACGTACATACTCCCC 59.467 55.000 0.00 0.00 0.00 4.81
4672 5177 5.313772 TCCATAGTTCTTCCCCTTTGGTTTA 59.686 40.000 0.00 0.00 33.22 2.01
4673 5178 4.107311 TCCATAGTTCTTCCCCTTTGGTTT 59.893 41.667 0.00 0.00 33.22 3.27
4674 5179 3.660669 TCCATAGTTCTTCCCCTTTGGTT 59.339 43.478 0.00 0.00 33.22 3.67
4675 5180 3.265489 TCCATAGTTCTTCCCCTTTGGT 58.735 45.455 0.00 0.00 33.22 3.67
4677 5182 4.130118 CGATCCATAGTTCTTCCCCTTTG 58.870 47.826 0.00 0.00 0.00 2.77
4678 5183 3.136626 CCGATCCATAGTTCTTCCCCTTT 59.863 47.826 0.00 0.00 0.00 3.11
4679 5184 2.706190 CCGATCCATAGTTCTTCCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
4690 5228 1.000955 GGGTACAGTGCCGATCCATAG 59.999 57.143 0.98 0.00 0.00 2.23
4694 5232 1.043673 AGAGGGTACAGTGCCGATCC 61.044 60.000 0.98 0.00 0.00 3.36
4711 5249 8.154856 ACTGGCTGTTTAAATTACTTGTCTAGA 58.845 33.333 0.00 0.00 0.00 2.43
4712 5250 8.324163 ACTGGCTGTTTAAATTACTTGTCTAG 57.676 34.615 0.00 0.00 0.00 2.43
4713 5251 9.211485 GTACTGGCTGTTTAAATTACTTGTCTA 57.789 33.333 1.31 0.00 0.00 2.59
4714 5252 7.717875 TGTACTGGCTGTTTAAATTACTTGTCT 59.282 33.333 1.31 0.00 0.00 3.41
4715 5253 7.867752 TGTACTGGCTGTTTAAATTACTTGTC 58.132 34.615 1.31 0.00 0.00 3.18
4717 5255 6.801862 GCTGTACTGGCTGTTTAAATTACTTG 59.198 38.462 1.31 0.00 0.00 3.16
4718 5256 6.488683 TGCTGTACTGGCTGTTTAAATTACTT 59.511 34.615 1.31 0.00 0.00 2.24
4731 5329 2.297033 CCATGTTTTTGCTGTACTGGCT 59.703 45.455 11.40 0.00 0.00 4.75
4764 5362 3.422546 GCTCTTCGATGATTGCTACGTAC 59.577 47.826 0.95 0.00 0.00 3.67
4765 5363 3.066203 TGCTCTTCGATGATTGCTACGTA 59.934 43.478 11.97 0.00 0.00 3.57
4767 5365 2.463876 TGCTCTTCGATGATTGCTACG 58.536 47.619 11.97 0.00 0.00 3.51
4768 5366 4.864916 TTTGCTCTTCGATGATTGCTAC 57.135 40.909 11.97 0.00 0.00 3.58
4769 5367 5.118286 TCATTTGCTCTTCGATGATTGCTA 58.882 37.500 11.97 4.14 0.00 3.49
4770 5368 3.943381 TCATTTGCTCTTCGATGATTGCT 59.057 39.130 11.97 0.00 0.00 3.91
4777 5377 8.986847 CAATTACTAGATCATTTGCTCTTCGAT 58.013 33.333 0.00 0.00 0.00 3.59
4780 5380 7.923888 TGCAATTACTAGATCATTTGCTCTTC 58.076 34.615 0.00 0.00 39.98 2.87
4852 5461 6.653273 ATGTGTTCTGTTGATACTTGATCG 57.347 37.500 0.00 0.00 37.38 3.69
4870 5479 4.767000 TGGATCTCCCCTATCTATGTGT 57.233 45.455 0.00 0.00 34.29 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.