Multiple sequence alignment - TraesCS1D01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G400000 chr1D 100.000 3997 0 0 1928 5924 466426844 466430840 0.000000e+00 7382.0
1 TraesCS1D01G400000 chr1D 100.000 1513 0 0 1 1513 466424917 466426429 0.000000e+00 2795.0
2 TraesCS1D01G400000 chr1A 93.651 1827 85 10 4112 5924 558552900 558554709 0.000000e+00 2702.0
3 TraesCS1D01G400000 chr1A 86.401 1103 98 19 3060 4112 558551866 558552966 0.000000e+00 1158.0
4 TraesCS1D01G400000 chr1A 90.550 582 39 12 2258 2826 558551051 558551629 0.000000e+00 756.0
5 TraesCS1D01G400000 chr1A 86.385 639 45 17 578 1196 558549786 558550402 0.000000e+00 660.0
6 TraesCS1D01G400000 chr1A 94.631 149 5 3 1 146 558548862 558549010 1.660000e-55 228.0
7 TraesCS1D01G400000 chr1A 81.304 230 14 12 134 336 558549845 558550072 6.140000e-35 159.0
8 TraesCS1D01G400000 chr1A 91.781 73 5 1 4112 4183 534448211 534448283 3.780000e-17 100.0
9 TraesCS1D01G400000 chr1B 91.347 1433 84 24 3767 5166 643176723 643178148 0.000000e+00 1923.0
10 TraesCS1D01G400000 chr1B 92.186 947 44 14 1938 2859 643174952 643175893 0.000000e+00 1312.0
11 TraesCS1D01G400000 chr1B 85.855 1018 109 23 327 1333 643173746 643174739 0.000000e+00 1050.0
12 TraesCS1D01G400000 chr1B 84.913 749 72 11 3064 3782 643175971 643176708 0.000000e+00 719.0
13 TraesCS1D01G400000 chr1B 94.558 147 6 2 1 145 643173087 643173233 5.970000e-55 226.0
14 TraesCS1D01G400000 chr1B 87.912 91 10 1 5489 5579 643179044 643179133 8.120000e-19 106.0
15 TraesCS1D01G400000 chr1B 90.000 80 8 0 1434 1513 643174828 643174907 2.920000e-18 104.0
16 TraesCS1D01G400000 chr4B 90.789 76 7 0 1437 1512 673101937 673102012 1.050000e-17 102.0
17 TraesCS1D01G400000 chr4A 89.474 76 8 0 1438 1513 27645887 27645812 4.890000e-16 97.1
18 TraesCS1D01G400000 chr2B 87.500 80 10 0 1434 1513 560893380 560893459 6.320000e-15 93.5
19 TraesCS1D01G400000 chr5A 88.158 76 9 0 1438 1513 26532176 26532101 2.270000e-14 91.6
20 TraesCS1D01G400000 chr3A 88.158 76 9 0 1438 1513 739325013 739325088 2.270000e-14 91.6
21 TraesCS1D01G400000 chr3A 87.179 78 10 0 1436 1513 16176671 16176594 8.180000e-14 89.8
22 TraesCS1D01G400000 chr5D 87.342 79 9 1 1434 1512 51845619 51845696 8.180000e-14 89.8
23 TraesCS1D01G400000 chr6B 86.420 81 9 2 1434 1513 256326137 256326216 2.940000e-13 87.9
24 TraesCS1D01G400000 chr2A 100.000 28 0 0 4134 4161 74564054 74564027 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G400000 chr1D 466424917 466430840 5923 False 5088.500000 7382 100.000000 1 5924 2 chr1D.!!$F1 5923
1 TraesCS1D01G400000 chr1A 558548862 558554709 5847 False 943.833333 2702 88.820333 1 5924 6 chr1A.!!$F2 5923
2 TraesCS1D01G400000 chr1B 643173087 643179133 6046 False 777.142857 1923 89.538714 1 5579 7 chr1B.!!$F1 5578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 220 0.095245 CCTGCTTCGTACATGCAACG 59.905 55.0 13.46 13.46 41.64 4.10 F
363 701 0.176449 ATACCCGTCCCTGTAAACGC 59.824 55.0 0.00 0.00 37.56 4.84 F
646 1511 0.673644 ACGGGTTGCTTCGATGAAGG 60.674 55.0 8.49 0.00 39.76 3.46 F
2115 3092 0.109723 TTCCAAAACCCGACCTCCAG 59.890 55.0 0.00 0.00 0.00 3.86 F
3349 4546 0.173708 GGACCGTCACTCTCATGGTC 59.826 60.0 0.00 2.88 45.82 4.02 F
4350 5633 0.687354 TGGCTCAACCTCTCCTCAAC 59.313 55.0 0.00 0.00 40.22 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1117 2012 0.252467 AACTCCAGGAGGTCCCTCTG 60.252 60.000 21.31 8.96 45.60 3.35 R
1274 2204 1.131638 AGGACCAGTTCACAAGCAGA 58.868 50.000 0.00 0.00 0.00 4.26 R
2463 3482 1.227943 ACTGTCACTGCCACGCATT 60.228 52.632 0.00 0.00 38.13 3.56 R
4075 5345 0.462581 GGCTCATCTGCATCCGTGAA 60.463 55.000 0.00 0.00 34.04 3.18 R
4419 5702 1.000506 ACCCTGTACACGTAGCAACAG 59.999 52.381 10.25 10.25 39.22 3.16 R
5468 7304 0.310854 GTGCCAAGTGTTGTAGTGCC 59.689 55.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.796495 GTGCATGGGGACGGGGTC 62.796 72.222 0.00 0.00 0.00 4.46
146 150 1.734477 CTCGGAGCGTTCACACCTG 60.734 63.158 0.53 0.00 0.00 4.00
147 151 2.738521 CGGAGCGTTCACACCTGG 60.739 66.667 0.53 0.00 0.00 4.45
148 152 3.050275 GGAGCGTTCACACCTGGC 61.050 66.667 0.53 0.00 0.00 4.85
149 153 3.050275 GAGCGTTCACACCTGGCC 61.050 66.667 0.00 0.00 0.00 5.36
150 154 4.988598 AGCGTTCACACCTGGCCG 62.989 66.667 0.00 0.00 0.00 6.13
152 156 3.345808 CGTTCACACCTGGCCGTG 61.346 66.667 9.03 9.03 39.75 4.94
153 157 3.660111 GTTCACACCTGGCCGTGC 61.660 66.667 10.38 0.00 37.25 5.34
172 176 2.616969 GTGCGTGACACTGATTGGT 58.383 52.632 3.68 0.00 46.41 3.67
173 177 1.790755 GTGCGTGACACTGATTGGTA 58.209 50.000 3.68 0.00 46.41 3.25
174 178 1.459592 GTGCGTGACACTGATTGGTAC 59.540 52.381 3.68 0.00 46.41 3.34
175 179 1.343142 TGCGTGACACTGATTGGTACT 59.657 47.619 3.68 0.00 0.00 2.73
176 180 1.993370 GCGTGACACTGATTGGTACTC 59.007 52.381 3.68 0.00 0.00 2.59
179 183 1.548719 TGACACTGATTGGTACTCCCG 59.451 52.381 0.00 0.00 35.15 5.14
181 185 1.825474 ACACTGATTGGTACTCCCGAG 59.175 52.381 0.00 0.00 35.15 4.63
183 187 0.249073 CTGATTGGTACTCCCGAGCG 60.249 60.000 0.00 0.00 35.59 5.03
194 198 2.124236 CCGAGCGGAGGGAGTAGT 60.124 66.667 2.00 0.00 37.50 2.73
195 199 2.482333 CCGAGCGGAGGGAGTAGTG 61.482 68.421 2.00 0.00 37.50 2.74
197 201 2.760385 AGCGGAGGGAGTAGTGCC 60.760 66.667 0.00 0.00 0.00 5.01
198 202 3.851128 GCGGAGGGAGTAGTGCCC 61.851 72.222 4.16 0.85 46.40 5.36
205 209 1.153549 GGAGTAGTGCCCTGCTTCG 60.154 63.158 0.00 0.00 33.35 3.79
206 210 1.592223 GAGTAGTGCCCTGCTTCGT 59.408 57.895 0.00 0.00 33.35 3.85
208 212 0.531200 AGTAGTGCCCTGCTTCGTAC 59.469 55.000 0.00 0.00 27.97 3.67
209 213 0.245539 GTAGTGCCCTGCTTCGTACA 59.754 55.000 0.00 0.00 0.00 2.90
210 214 1.134788 GTAGTGCCCTGCTTCGTACAT 60.135 52.381 0.00 0.00 0.00 2.29
211 215 0.391661 AGTGCCCTGCTTCGTACATG 60.392 55.000 0.00 0.00 0.00 3.21
212 216 1.745115 TGCCCTGCTTCGTACATGC 60.745 57.895 0.00 0.00 0.00 4.06
213 217 1.745115 GCCCTGCTTCGTACATGCA 60.745 57.895 0.00 0.00 34.14 3.96
214 218 1.305219 GCCCTGCTTCGTACATGCAA 61.305 55.000 0.00 0.00 34.86 4.08
215 219 0.447801 CCCTGCTTCGTACATGCAAC 59.552 55.000 0.00 0.00 34.86 4.17
216 220 0.095245 CCTGCTTCGTACATGCAACG 59.905 55.000 13.46 13.46 41.64 4.10
217 221 0.519175 CTGCTTCGTACATGCAACGC 60.519 55.000 14.53 3.95 40.12 4.84
220 224 1.591248 CTTCGTACATGCAACGCAAC 58.409 50.000 14.53 0.00 43.62 4.17
221 225 0.236187 TTCGTACATGCAACGCAACC 59.764 50.000 14.53 0.00 43.62 3.77
226 230 2.074353 CATGCAACGCAACCGAACG 61.074 57.895 0.00 0.00 43.62 3.95
227 231 3.872409 ATGCAACGCAACCGAACGC 62.872 57.895 0.00 0.00 43.62 4.84
228 232 4.599434 GCAACGCAACCGAACGCA 62.599 61.111 0.00 0.00 38.29 5.24
229 233 2.023461 CAACGCAACCGAACGCAA 59.977 55.556 0.00 0.00 38.29 4.85
231 235 3.776954 AACGCAACCGAACGCAACG 62.777 57.895 0.00 0.00 38.29 4.10
232 236 3.990806 CGCAACCGAACGCAACGA 61.991 61.111 0.00 0.00 36.29 3.85
233 237 2.424640 GCAACCGAACGCAACGAC 60.425 61.111 0.00 0.00 0.00 4.34
235 239 1.083657 CAACCGAACGCAACGACAG 60.084 57.895 0.00 0.00 0.00 3.51
236 240 2.877974 AACCGAACGCAACGACAGC 61.878 57.895 0.00 0.00 0.00 4.40
255 259 3.723348 GCGGCGTTCCCACTTGAC 61.723 66.667 9.37 0.00 0.00 3.18
256 260 2.280524 CGGCGTTCCCACTTGACA 60.281 61.111 0.00 0.00 0.00 3.58
257 261 2.604174 CGGCGTTCCCACTTGACAC 61.604 63.158 0.00 0.00 0.00 3.67
258 262 2.258726 GGCGTTCCCACTTGACACC 61.259 63.158 0.00 0.00 0.00 4.16
260 264 0.818040 GCGTTCCCACTTGACACCTT 60.818 55.000 0.00 0.00 0.00 3.50
261 265 1.226746 CGTTCCCACTTGACACCTTC 58.773 55.000 0.00 0.00 0.00 3.46
262 266 1.605753 GTTCCCACTTGACACCTTCC 58.394 55.000 0.00 0.00 0.00 3.46
265 269 0.890996 CCCACTTGACACCTTCCTGC 60.891 60.000 0.00 0.00 0.00 4.85
266 270 1.230635 CCACTTGACACCTTCCTGCG 61.231 60.000 0.00 0.00 0.00 5.18
267 271 0.532862 CACTTGACACCTTCCTGCGT 60.533 55.000 0.00 0.00 0.00 5.24
268 272 0.532862 ACTTGACACCTTCCTGCGTG 60.533 55.000 0.00 0.00 36.04 5.34
270 274 3.414700 GACACCTTCCTGCGTGCG 61.415 66.667 0.00 0.00 33.09 5.34
271 275 4.235762 ACACCTTCCTGCGTGCGT 62.236 61.111 0.00 0.00 33.09 5.24
272 276 3.716006 CACCTTCCTGCGTGCGTG 61.716 66.667 0.00 0.00 0.00 5.34
301 305 5.664870 CGCTCCGCTTGTTAAAATTTAAG 57.335 39.130 0.00 0.00 0.00 1.85
302 306 4.030195 CGCTCCGCTTGTTAAAATTTAAGC 59.970 41.667 11.71 11.71 41.47 3.09
306 310 4.225815 GCTTGTTAAAATTTAAGCGCCG 57.774 40.909 2.29 0.00 36.56 6.46
307 311 3.060230 GCTTGTTAAAATTTAAGCGCCGG 59.940 43.478 2.29 0.00 36.56 6.13
309 313 1.580256 GTTAAAATTTAAGCGCCGGCG 59.420 47.619 43.13 43.13 46.35 6.46
348 686 6.204108 GGGTACATACACAACAAGCATATACC 59.796 42.308 0.00 0.00 0.00 2.73
355 693 1.802553 ACAAGCATATACCCGTCCCT 58.197 50.000 0.00 0.00 0.00 4.20
356 694 1.416401 ACAAGCATATACCCGTCCCTG 59.584 52.381 0.00 0.00 0.00 4.45
357 695 1.416401 CAAGCATATACCCGTCCCTGT 59.584 52.381 0.00 0.00 0.00 4.00
361 699 3.070590 AGCATATACCCGTCCCTGTAAAC 59.929 47.826 0.00 0.00 0.00 2.01
362 700 3.645884 CATATACCCGTCCCTGTAAACG 58.354 50.000 0.00 0.00 38.58 3.60
363 701 0.176449 ATACCCGTCCCTGTAAACGC 59.824 55.000 0.00 0.00 37.56 4.84
365 703 2.030958 CCCGTCCCTGTAAACGCAC 61.031 63.158 0.00 0.00 37.56 5.34
366 704 2.377310 CCGTCCCTGTAAACGCACG 61.377 63.158 0.00 0.00 37.56 5.34
367 705 2.858158 GTCCCTGTAAACGCACGC 59.142 61.111 0.00 0.00 0.00 5.34
368 706 1.957186 GTCCCTGTAAACGCACGCA 60.957 57.895 0.00 0.00 0.00 5.24
369 707 1.957186 TCCCTGTAAACGCACGCAC 60.957 57.895 0.00 0.00 0.00 5.34
370 708 2.170036 CCTGTAAACGCACGCACG 59.830 61.111 0.00 0.00 39.50 5.34
379 717 1.866496 CGCACGCACGTAGGTCTAC 60.866 63.158 0.00 0.00 0.00 2.59
382 720 0.791983 CACGCACGTAGGTCTACACG 60.792 60.000 8.61 10.07 43.63 4.49
396 750 4.202020 GGTCTACACGTATGAGCATCTTCA 60.202 45.833 0.00 0.00 34.92 3.02
406 760 4.341366 TGAGCATCTTCAAGTGACTGAA 57.659 40.909 0.00 0.00 34.92 3.02
423 777 1.476085 TGAACCGGCATAGCATTTTGG 59.524 47.619 0.00 0.00 0.00 3.28
438 792 4.726416 CATTTTGGGATTCACGAAGTCAG 58.274 43.478 0.00 0.00 41.61 3.51
475 829 1.267533 TCGACGAAAACGTCATCTCCA 59.732 47.619 19.64 0.00 38.68 3.86
491 845 1.871039 CTCCAACCGAACAAACATCGT 59.129 47.619 0.00 0.00 38.60 3.73
533 1049 9.933723 AAATCTAGAAAATTGCAAGCAATACTT 57.066 25.926 19.45 15.37 44.86 2.24
534 1050 9.933723 AATCTAGAAAATTGCAAGCAATACTTT 57.066 25.926 19.45 16.42 44.86 2.66
535 1051 9.933723 ATCTAGAAAATTGCAAGCAATACTTTT 57.066 25.926 19.45 16.40 44.86 2.27
536 1052 9.762933 TCTAGAAAATTGCAAGCAATACTTTTT 57.237 25.926 19.45 16.09 44.86 1.94
554 1070 2.622546 TTTTCGGGTAAATTGCGAGC 57.377 45.000 0.00 0.00 0.00 5.03
555 1071 1.524848 TTTCGGGTAAATTGCGAGCA 58.475 45.000 0.00 0.00 0.00 4.26
556 1072 1.524848 TTCGGGTAAATTGCGAGCAA 58.475 45.000 13.16 13.16 40.47 3.91
558 1074 2.907634 TCGGGTAAATTGCGAGCAATA 58.092 42.857 21.65 6.47 44.86 1.90
559 1075 2.610374 TCGGGTAAATTGCGAGCAATAC 59.390 45.455 21.65 16.73 44.86 1.89
560 1076 2.612212 CGGGTAAATTGCGAGCAATACT 59.388 45.455 21.65 14.77 44.86 2.12
561 1077 3.805422 CGGGTAAATTGCGAGCAATACTA 59.195 43.478 21.65 13.90 44.86 1.82
562 1078 4.084537 CGGGTAAATTGCGAGCAATACTAG 60.085 45.833 21.65 11.92 44.86 2.57
629 1494 6.255020 ACTTTTATGCTAACCGTCTAATCACG 59.745 38.462 0.00 0.00 39.61 4.35
646 1511 0.673644 ACGGGTTGCTTCGATGAAGG 60.674 55.000 8.49 0.00 39.76 3.46
678 1550 4.318021 GTGCCTGTGCGTGCTGTG 62.318 66.667 0.00 0.00 41.78 3.66
684 1556 2.126734 GTGCGTGCTGTGATTGGC 60.127 61.111 0.00 0.00 0.00 4.52
730 1602 3.302347 GAGTAGTGCGTGCCCTGCT 62.302 63.158 0.00 0.00 0.00 4.24
731 1603 2.358737 GTAGTGCGTGCCCTGCTT 60.359 61.111 0.00 0.00 0.00 3.91
732 1604 2.047274 TAGTGCGTGCCCTGCTTC 60.047 61.111 0.00 0.00 0.00 3.86
733 1605 3.932580 TAGTGCGTGCCCTGCTTCG 62.933 63.158 0.00 0.00 0.00 3.79
911 1790 1.288439 AGCACAGACTCGCTCACAG 59.712 57.895 0.00 0.00 31.16 3.66
921 1800 2.480419 ACTCGCTCACAGCAAAACATAC 59.520 45.455 0.00 0.00 42.58 2.39
922 1801 2.738846 CTCGCTCACAGCAAAACATACT 59.261 45.455 0.00 0.00 42.58 2.12
923 1802 3.920446 TCGCTCACAGCAAAACATACTA 58.080 40.909 0.00 0.00 42.58 1.82
925 1804 5.656480 TCGCTCACAGCAAAACATACTATA 58.344 37.500 0.00 0.00 42.58 1.31
926 1805 5.748630 TCGCTCACAGCAAAACATACTATAG 59.251 40.000 0.00 0.00 42.58 1.31
927 1806 5.557136 CGCTCACAGCAAAACATACTATAGC 60.557 44.000 0.00 0.00 42.58 2.97
928 1807 5.557136 GCTCACAGCAAAACATACTATAGCG 60.557 44.000 0.00 0.00 41.89 4.26
929 1808 4.270084 TCACAGCAAAACATACTATAGCGC 59.730 41.667 0.00 0.00 0.00 5.92
972 1859 1.327988 CTGTCTGTCACGTACGTGCG 61.328 60.000 37.13 27.24 45.04 5.34
976 1863 1.999024 TCTGTCACGTACGTGCGTATA 59.001 47.619 37.13 21.03 43.83 1.47
979 1868 3.860672 TGTCACGTACGTGCGTATATAC 58.139 45.455 37.13 28.18 43.83 1.47
986 1875 4.484991 CGTACGTGCGTATATACATACACG 59.515 45.833 31.09 31.09 45.21 4.49
1074 1966 2.582498 GGGCCGATCGTCGACTTG 60.582 66.667 15.09 0.00 43.74 3.16
1149 2044 2.576832 GGAGTTCGGGGTCAACGGA 61.577 63.158 0.00 0.00 0.00 4.69
1151 2046 0.947660 GAGTTCGGGGTCAACGGAAC 60.948 60.000 8.11 8.11 45.50 3.62
1182 2077 4.394729 CCAACAGGTAAACACACACCTAT 58.605 43.478 0.00 0.00 43.45 2.57
1183 2078 4.215399 CCAACAGGTAAACACACACCTATG 59.785 45.833 0.00 0.00 43.45 2.23
1207 2109 4.556942 TGCATAGCAAGCATGTATTGAC 57.443 40.909 14.61 7.62 37.02 3.18
1215 2117 4.576053 GCAAGCATGTATTGACTCCATACA 59.424 41.667 14.61 5.63 35.56 2.29
1253 2183 4.921470 TGACGGAGATTCATTCGTTTTC 57.079 40.909 0.00 0.00 35.91 2.29
1274 2204 7.468141 TTTCTGATCGATGTATACTATGGCT 57.532 36.000 0.54 0.00 0.00 4.75
1333 2273 7.789273 AGCTTTGTCTCATCTCATTGATTAG 57.211 36.000 0.00 0.00 32.05 1.73
1340 2280 5.990386 TCTCATCTCATTGATTAGCAAGAGC 59.010 40.000 5.32 0.00 40.42 4.09
1342 2282 5.990386 TCATCTCATTGATTAGCAAGAGCTC 59.010 40.000 5.27 5.27 41.35 4.09
1343 2283 5.179742 CATCTCATTGATTAGCAAGAGCTCC 59.820 44.000 10.93 0.00 41.35 4.70
1344 2284 7.731433 CATCTCATTGATTAGCAAGAGCTCCC 61.731 46.154 10.93 0.00 41.35 4.30
1350 2290 3.354678 GCAAGAGCTCCCGCAAAA 58.645 55.556 17.68 0.00 39.10 2.44
1351 2291 1.659794 GCAAGAGCTCCCGCAAAAA 59.340 52.632 17.68 0.00 39.10 1.94
1392 2332 3.930634 ACAGACGTAGGAACCAACTAC 57.069 47.619 0.00 0.00 37.92 2.73
1393 2333 3.225104 ACAGACGTAGGAACCAACTACA 58.775 45.455 0.00 0.00 40.58 2.74
1394 2334 3.638160 ACAGACGTAGGAACCAACTACAA 59.362 43.478 0.00 0.00 40.58 2.41
1395 2335 4.235360 CAGACGTAGGAACCAACTACAAG 58.765 47.826 0.00 0.00 40.58 3.16
1396 2336 3.893813 AGACGTAGGAACCAACTACAAGT 59.106 43.478 0.00 0.00 40.58 3.16
1397 2337 5.048504 CAGACGTAGGAACCAACTACAAGTA 60.049 44.000 0.00 0.00 40.58 2.24
1398 2338 5.182760 AGACGTAGGAACCAACTACAAGTAG 59.817 44.000 5.72 5.72 40.58 2.57
1399 2339 4.171754 CGTAGGAACCAACTACAAGTAGC 58.828 47.826 7.14 0.00 40.58 3.58
1422 2362 3.698040 CAGCATTAAAGATCCCAACTGCT 59.302 43.478 4.40 4.40 39.15 4.24
1423 2363 3.950395 AGCATTAAAGATCCCAACTGCTC 59.050 43.478 4.40 0.00 33.73 4.26
1425 2365 2.691409 TAAAGATCCCAACTGCTCGG 57.309 50.000 0.00 0.00 0.00 4.63
1429 2369 1.372087 GATCCCAACTGCTCGGCTTG 61.372 60.000 0.00 0.00 0.00 4.01
1430 2370 1.841302 ATCCCAACTGCTCGGCTTGA 61.841 55.000 0.00 0.00 0.00 3.02
1431 2371 1.377725 CCCAACTGCTCGGCTTGAT 60.378 57.895 0.00 0.00 0.00 2.57
1443 2414 4.218852 GCTCGGCTTGATTATAGTACTCCT 59.781 45.833 0.00 0.00 0.00 3.69
1446 2417 6.746120 TCGGCTTGATTATAGTACTCCTTTC 58.254 40.000 0.00 0.00 0.00 2.62
1450 2421 8.994170 GGCTTGATTATAGTACTCCTTTCATTC 58.006 37.037 0.00 0.00 0.00 2.67
1451 2422 8.994170 GCTTGATTATAGTACTCCTTTCATTCC 58.006 37.037 0.00 0.00 0.00 3.01
1504 2475 8.677148 ATATGAACTACATACCGAGCAAAATT 57.323 30.769 0.00 0.00 43.12 1.82
1965 2936 9.968870 AAATCTCTAAAGCGACTTATAGTTAGG 57.031 33.333 0.00 0.00 0.00 2.69
1972 2943 4.036144 AGCGACTTATAGTTAGGAACGGAC 59.964 45.833 0.00 0.00 36.23 4.79
2107 3084 8.921670 CAATTTTATACTTCTTTCCAAAACCCG 58.078 33.333 0.00 0.00 0.00 5.28
2113 3090 1.202842 TCTTTCCAAAACCCGACCTCC 60.203 52.381 0.00 0.00 0.00 4.30
2115 3092 0.109723 TTCCAAAACCCGACCTCCAG 59.890 55.000 0.00 0.00 0.00 3.86
2343 3359 7.399523 CAACCTATAGCTAGCTTTTAACAACG 58.600 38.462 24.88 3.81 0.00 4.10
2380 3399 1.608590 ACTGGTTGGTCTTTTGCGATG 59.391 47.619 0.00 0.00 0.00 3.84
2390 3409 4.636206 GGTCTTTTGCGATGATTAAGGAGT 59.364 41.667 0.00 0.00 0.00 3.85
2451 3470 5.823209 TGTGATGCATATTCCACTTTCTG 57.177 39.130 15.01 0.00 0.00 3.02
2463 3482 2.634940 CCACTTTCTGACCTCTCCTTGA 59.365 50.000 0.00 0.00 0.00 3.02
2464 3483 3.071602 CCACTTTCTGACCTCTCCTTGAA 59.928 47.826 0.00 0.00 0.00 2.69
2646 3665 0.179048 TCACATCATGCACCCGATCC 60.179 55.000 0.00 0.00 0.00 3.36
2659 3680 4.083110 GCACCCGATCCTCATCAATTTATG 60.083 45.833 0.00 0.00 0.00 1.90
2660 3681 4.456911 CACCCGATCCTCATCAATTTATGG 59.543 45.833 0.00 0.00 0.00 2.74
2796 3820 5.138125 TCCAAATTGGAATCTTCAGTTGC 57.862 39.130 13.04 0.00 45.00 4.17
2798 3822 5.305128 TCCAAATTGGAATCTTCAGTTGCTT 59.695 36.000 13.04 0.00 45.00 3.91
2799 3823 5.636543 CCAAATTGGAATCTTCAGTTGCTTC 59.363 40.000 6.04 0.00 40.96 3.86
2801 3825 5.640189 ATTGGAATCTTCAGTTGCTTCTG 57.360 39.130 3.04 3.04 36.85 3.02
2802 3826 4.356405 TGGAATCTTCAGTTGCTTCTGA 57.644 40.909 7.19 7.19 41.85 3.27
2804 3828 3.438434 GGAATCTTCAGTTGCTTCTGACC 59.562 47.826 10.08 5.60 43.01 4.02
2805 3829 3.777106 ATCTTCAGTTGCTTCTGACCA 57.223 42.857 10.08 2.45 43.01 4.02
2806 3830 3.117491 TCTTCAGTTGCTTCTGACCAG 57.883 47.619 10.08 7.25 43.01 4.00
2807 3831 1.534595 CTTCAGTTGCTTCTGACCAGC 59.465 52.381 10.08 0.00 43.01 4.85
2808 3832 0.761187 TCAGTTGCTTCTGACCAGCT 59.239 50.000 7.19 0.00 39.20 4.24
2853 4012 9.981114 ACCTTTTCAACCAGTTAATTAAAGATG 57.019 29.630 0.00 0.00 0.00 2.90
2854 4013 8.925700 CCTTTTCAACCAGTTAATTAAAGATGC 58.074 33.333 0.00 0.00 0.00 3.91
2855 4014 9.696917 CTTTTCAACCAGTTAATTAAAGATGCT 57.303 29.630 0.00 0.00 0.00 3.79
2856 4015 9.691362 TTTTCAACCAGTTAATTAAAGATGCTC 57.309 29.630 0.00 0.00 0.00 4.26
2858 4017 8.402798 TCAACCAGTTAATTAAAGATGCTCAA 57.597 30.769 0.00 0.00 0.00 3.02
2859 4018 9.023962 TCAACCAGTTAATTAAAGATGCTCAAT 57.976 29.630 0.00 0.00 0.00 2.57
2860 4019 9.079833 CAACCAGTTAATTAAAGATGCTCAATG 57.920 33.333 0.00 0.00 0.00 2.82
2861 4020 8.579850 ACCAGTTAATTAAAGATGCTCAATGA 57.420 30.769 0.00 0.00 0.00 2.57
2862 4021 9.023962 ACCAGTTAATTAAAGATGCTCAATGAA 57.976 29.630 0.00 0.00 0.00 2.57
2864 4023 9.003112 CAGTTAATTAAAGATGCTCAATGAACG 57.997 33.333 0.00 0.00 30.24 3.95
2865 4024 8.946085 AGTTAATTAAAGATGCTCAATGAACGA 58.054 29.630 0.00 0.00 30.24 3.85
2866 4025 9.000018 GTTAATTAAAGATGCTCAATGAACGAC 58.000 33.333 0.00 0.00 0.00 4.34
2867 4026 6.741992 ATTAAAGATGCTCAATGAACGACA 57.258 33.333 0.00 0.00 0.00 4.35
2870 4029 3.603532 AGATGCTCAATGAACGACACAT 58.396 40.909 0.00 0.00 0.00 3.21
2871 4030 3.373130 AGATGCTCAATGAACGACACATG 59.627 43.478 0.00 0.00 0.00 3.21
2872 4031 1.805943 TGCTCAATGAACGACACATGG 59.194 47.619 0.00 0.00 0.00 3.66
2873 4032 2.076100 GCTCAATGAACGACACATGGA 58.924 47.619 0.00 0.00 0.00 3.41
2878 4037 6.083098 TCAATGAACGACACATGGAAAAAT 57.917 33.333 0.00 0.00 0.00 1.82
2879 4038 6.511416 TCAATGAACGACACATGGAAAAATT 58.489 32.000 0.00 0.00 0.00 1.82
2881 4040 7.593273 TCAATGAACGACACATGGAAAAATTAC 59.407 33.333 0.00 0.00 0.00 1.89
2882 4041 6.627395 TGAACGACACATGGAAAAATTACT 57.373 33.333 0.00 0.00 0.00 2.24
2883 4042 6.434596 TGAACGACACATGGAAAAATTACTG 58.565 36.000 0.00 0.00 0.00 2.74
2884 4043 4.794169 ACGACACATGGAAAAATTACTGC 58.206 39.130 0.00 0.00 0.00 4.40
2885 4044 3.845775 CGACACATGGAAAAATTACTGCG 59.154 43.478 0.00 0.00 0.00 5.18
2886 4045 4.165779 GACACATGGAAAAATTACTGCGG 58.834 43.478 0.00 0.00 0.00 5.69
2888 4047 4.038642 ACACATGGAAAAATTACTGCGGTT 59.961 37.500 1.99 0.00 0.00 4.44
2889 4048 5.241949 ACACATGGAAAAATTACTGCGGTTA 59.758 36.000 1.99 0.00 0.00 2.85
2890 4049 6.153067 CACATGGAAAAATTACTGCGGTTAA 58.847 36.000 1.99 0.00 0.00 2.01
2891 4050 6.811170 CACATGGAAAAATTACTGCGGTTAAT 59.189 34.615 1.99 0.00 0.00 1.40
2892 4051 7.971168 CACATGGAAAAATTACTGCGGTTAATA 59.029 33.333 1.99 0.00 0.00 0.98
2893 4052 7.971722 ACATGGAAAAATTACTGCGGTTAATAC 59.028 33.333 1.99 0.00 0.00 1.89
2894 4053 7.450124 TGGAAAAATTACTGCGGTTAATACA 57.550 32.000 1.99 0.00 0.00 2.29
2895 4054 7.883217 TGGAAAAATTACTGCGGTTAATACAA 58.117 30.769 1.99 0.00 0.00 2.41
2896 4055 8.524487 TGGAAAAATTACTGCGGTTAATACAAT 58.476 29.630 1.99 0.00 0.00 2.71
2902 4061 9.555727 AATTACTGCGGTTAATACAATACATCT 57.444 29.630 1.99 0.00 0.00 2.90
2906 4065 9.555727 ACTGCGGTTAATACAATACATCTATTT 57.444 29.630 0.00 0.00 0.00 1.40
2932 4091 9.796120 TTTACTTGAACCAAACATTGTAAGAAG 57.204 29.630 0.00 0.00 0.00 2.85
2933 4092 7.639113 ACTTGAACCAAACATTGTAAGAAGA 57.361 32.000 0.00 0.00 0.00 2.87
2934 4093 8.062065 ACTTGAACCAAACATTGTAAGAAGAA 57.938 30.769 0.00 0.00 0.00 2.52
2935 4094 8.190784 ACTTGAACCAAACATTGTAAGAAGAAG 58.809 33.333 0.00 0.00 0.00 2.85
2936 4095 7.873719 TGAACCAAACATTGTAAGAAGAAGA 57.126 32.000 0.00 0.00 0.00 2.87
2937 4096 8.287439 TGAACCAAACATTGTAAGAAGAAGAA 57.713 30.769 0.00 0.00 0.00 2.52
2938 4097 8.744652 TGAACCAAACATTGTAAGAAGAAGAAA 58.255 29.630 0.00 0.00 0.00 2.52
2939 4098 9.581099 GAACCAAACATTGTAAGAAGAAGAAAA 57.419 29.630 0.00 0.00 0.00 2.29
2940 4099 9.936759 AACCAAACATTGTAAGAAGAAGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
2941 4100 9.586435 ACCAAACATTGTAAGAAGAAGAAAAAG 57.414 29.630 0.00 0.00 0.00 2.27
2942 4101 9.801873 CCAAACATTGTAAGAAGAAGAAAAAGA 57.198 29.630 0.00 0.00 0.00 2.52
2946 4105 9.956720 ACATTGTAAGAAGAAGAAAAAGATGTG 57.043 29.630 0.00 0.00 0.00 3.21
2950 4109 9.342308 TGTAAGAAGAAGAAAAAGATGTGATGT 57.658 29.630 0.00 0.00 0.00 3.06
2951 4110 9.604626 GTAAGAAGAAGAAAAAGATGTGATGTG 57.395 33.333 0.00 0.00 0.00 3.21
2952 4111 7.211966 AGAAGAAGAAAAAGATGTGATGTGG 57.788 36.000 0.00 0.00 0.00 4.17
2953 4112 5.382618 AGAAGAAAAAGATGTGATGTGGC 57.617 39.130 0.00 0.00 0.00 5.01
2954 4113 4.828939 AGAAGAAAAAGATGTGATGTGGCA 59.171 37.500 0.00 0.00 0.00 4.92
2955 4114 5.302568 AGAAGAAAAAGATGTGATGTGGCAA 59.697 36.000 0.00 0.00 0.00 4.52
2956 4115 5.534207 AGAAAAAGATGTGATGTGGCAAA 57.466 34.783 0.00 0.00 0.00 3.68
2957 4116 5.916318 AGAAAAAGATGTGATGTGGCAAAA 58.084 33.333 0.00 0.00 0.00 2.44
2958 4117 6.347696 AGAAAAAGATGTGATGTGGCAAAAA 58.652 32.000 0.00 0.00 0.00 1.94
3031 4190 9.865321 TTGTACAACTTATAAAGTCGAATAGCT 57.135 29.630 3.59 0.00 41.91 3.32
3032 4191 9.865321 TGTACAACTTATAAAGTCGAATAGCTT 57.135 29.630 0.00 0.00 41.91 3.74
3036 4195 9.798885 CAACTTATAAAGTCGAATAGCTTATGC 57.201 33.333 0.00 0.00 41.91 3.14
3037 4196 9.542462 AACTTATAAAGTCGAATAGCTTATGCA 57.458 29.630 0.00 0.00 41.91 3.96
3038 4197 9.712305 ACTTATAAAGTCGAATAGCTTATGCAT 57.288 29.630 3.79 3.79 38.45 3.96
3039 4198 9.964253 CTTATAAAGTCGAATAGCTTATGCATG 57.036 33.333 10.16 0.00 42.74 4.06
3040 4199 9.705290 TTATAAAGTCGAATAGCTTATGCATGA 57.295 29.630 10.16 0.00 42.74 3.07
3041 4200 8.783833 ATAAAGTCGAATAGCTTATGCATGAT 57.216 30.769 10.16 0.00 42.74 2.45
3042 4201 7.502120 AAAGTCGAATAGCTTATGCATGATT 57.498 32.000 10.16 1.09 42.74 2.57
3043 4202 8.607441 AAAGTCGAATAGCTTATGCATGATTA 57.393 30.769 10.16 0.00 42.74 1.75
3044 4203 8.607441 AAGTCGAATAGCTTATGCATGATTAA 57.393 30.769 10.16 0.00 42.74 1.40
3045 4204 8.783833 AGTCGAATAGCTTATGCATGATTAAT 57.216 30.769 10.16 0.00 42.74 1.40
3046 4205 8.877779 AGTCGAATAGCTTATGCATGATTAATC 58.122 33.333 10.16 8.60 42.74 1.75
3076 4269 5.949354 CCCATCAACTAAAAAGGGACACATA 59.051 40.000 0.00 0.00 38.60 2.29
3083 4276 9.757227 CAACTAAAAAGGGACACATATTGAAAA 57.243 29.630 0.00 0.00 0.00 2.29
3090 4283 7.722949 AGGGACACATATTGAAAATGATTGT 57.277 32.000 0.00 0.00 0.00 2.71
3091 4284 7.549839 AGGGACACATATTGAAAATGATTGTG 58.450 34.615 0.00 0.00 39.03 3.33
3098 4291 9.357652 ACATATTGAAAATGATTGTGTACAAGC 57.642 29.630 0.00 6.08 42.14 4.01
3109 4302 7.915508 TGATTGTGTACAAGCTATAAAATCCG 58.084 34.615 13.33 0.00 42.27 4.18
3111 4304 7.908827 TTGTGTACAAGCTATAAAATCCGAA 57.091 32.000 0.00 0.00 0.00 4.30
3119 4312 7.339466 ACAAGCTATAAAATCCGAAATGGTCTT 59.661 33.333 0.00 0.00 39.52 3.01
3144 4341 9.513906 TTGACCAAGAATAACTAATCACATCAA 57.486 29.630 0.00 0.00 0.00 2.57
3154 4351 6.317789 ACTAATCACATCAACAACACCAAG 57.682 37.500 0.00 0.00 0.00 3.61
3155 4352 6.061441 ACTAATCACATCAACAACACCAAGA 58.939 36.000 0.00 0.00 0.00 3.02
3157 4354 5.633830 ATCACATCAACAACACCAAGATC 57.366 39.130 0.00 0.00 0.00 2.75
3160 4357 5.700832 TCACATCAACAACACCAAGATCTAC 59.299 40.000 0.00 0.00 0.00 2.59
3171 4368 6.879400 ACACCAAGATCTACTAATGGAGTTC 58.121 40.000 15.80 0.00 39.81 3.01
3190 4387 2.450476 TCCGTAAACTCCACTACTCCC 58.550 52.381 0.00 0.00 0.00 4.30
3191 4388 1.133790 CCGTAAACTCCACTACTCCCG 59.866 57.143 0.00 0.00 0.00 5.14
3203 4400 1.246056 TACTCCCGGTGGAACGACTG 61.246 60.000 0.00 0.00 41.17 3.51
3206 4403 2.732016 CCGGTGGAACGACTGTGA 59.268 61.111 0.00 0.00 38.12 3.58
3207 4404 1.068417 CCGGTGGAACGACTGTGAA 59.932 57.895 0.00 0.00 38.12 3.18
3216 4413 1.173444 ACGACTGTGAACGCTCCTCT 61.173 55.000 0.00 0.00 0.00 3.69
3223 4420 5.593010 ACTGTGAACGCTCCTCTAAATATC 58.407 41.667 0.00 0.00 0.00 1.63
3230 4427 8.088981 TGAACGCTCCTCTAAATATCCTAAATC 58.911 37.037 0.00 0.00 0.00 2.17
3231 4428 6.622549 ACGCTCCTCTAAATATCCTAAATCG 58.377 40.000 0.00 0.00 0.00 3.34
3233 4430 7.122948 ACGCTCCTCTAAATATCCTAAATCGAT 59.877 37.037 0.00 0.00 0.00 3.59
3234 4431 8.622157 CGCTCCTCTAAATATCCTAAATCGATA 58.378 37.037 0.00 0.00 0.00 2.92
3256 4453 1.133790 GGTACACGACAAGATAGCCGT 59.866 52.381 0.00 0.00 35.46 5.68
3271 4468 4.436998 CGTGAGGGACCGTCAGGC 62.437 72.222 20.35 8.85 42.76 4.85
3272 4469 3.311110 GTGAGGGACCGTCAGGCA 61.311 66.667 17.08 0.00 42.76 4.75
3278 4475 2.100631 GGACCGTCAGGCAACATCG 61.101 63.158 0.00 0.00 42.76 3.84
3281 4478 2.743752 CCGTCAGGCAACATCGCTG 61.744 63.158 0.00 0.00 41.41 5.18
3347 4544 1.139734 CGGACCGTCACTCTCATGG 59.860 63.158 5.48 0.00 0.00 3.66
3349 4546 0.173708 GGACCGTCACTCTCATGGTC 59.826 60.000 0.00 2.88 45.82 4.02
3586 4811 1.207089 TGATCATCCACACCGAGGTTC 59.793 52.381 0.00 0.00 0.00 3.62
3643 4868 6.802348 CGGAGTATAGAATTTCTATGACACCG 59.198 42.308 26.27 26.27 39.80 4.94
3763 4991 1.877443 TGCTTGAGGTAAAAAGTCCGC 59.123 47.619 0.00 0.00 0.00 5.54
3764 4992 1.136057 GCTTGAGGTAAAAAGTCCGCG 60.136 52.381 0.00 0.00 0.00 6.46
3924 5193 5.215252 TGTTCAGGTTAGGTCTCTTCAAG 57.785 43.478 0.00 0.00 0.00 3.02
3937 5206 5.007528 GGTCTCTTCAAGCTCAGCAATTATC 59.992 44.000 0.00 0.00 0.00 1.75
3947 5216 1.410153 CAGCAATTATCCCAAGTGGCC 59.590 52.381 0.00 0.00 0.00 5.36
3949 5218 1.410153 GCAATTATCCCAAGTGGCCTG 59.590 52.381 3.32 0.00 0.00 4.85
3950 5219 2.738743 CAATTATCCCAAGTGGCCTGT 58.261 47.619 3.32 0.00 0.00 4.00
3951 5220 2.428171 CAATTATCCCAAGTGGCCTGTG 59.572 50.000 3.32 0.00 0.00 3.66
3952 5221 1.367346 TTATCCCAAGTGGCCTGTGA 58.633 50.000 3.32 0.00 0.00 3.58
3954 5223 0.706433 ATCCCAAGTGGCCTGTGAAT 59.294 50.000 3.32 0.00 0.00 2.57
3958 5228 3.721575 TCCCAAGTGGCCTGTGAATATAT 59.278 43.478 3.32 0.00 0.00 0.86
4016 5286 9.651913 AAAAATCAAACATACATATGGGTGTTC 57.348 29.630 21.02 0.00 38.00 3.18
4093 5371 1.372582 TTTCACGGATGCAGATGAGC 58.627 50.000 0.00 0.00 0.00 4.26
4350 5633 0.687354 TGGCTCAACCTCTCCTCAAC 59.313 55.000 0.00 0.00 40.22 3.18
4395 5678 7.670009 TCCACCTCAAATTTTGCAAATATTG 57.330 32.000 22.14 22.14 0.00 1.90
4396 5679 7.222872 TCCACCTCAAATTTTGCAAATATTGT 58.777 30.769 24.81 14.27 0.00 2.71
4403 5686 9.322773 TCAAATTTTGCAAATATTGTCTGAACA 57.677 25.926 24.81 10.65 0.00 3.18
4419 5702 8.741101 TGTCTGAACACAATAATAACAAATGC 57.259 30.769 0.00 0.00 0.00 3.56
4716 5999 1.569493 GCATCACTGCGTCGTGTTT 59.431 52.632 6.21 0.00 38.92 2.83
4953 6239 2.553602 GTGCATTCACAGACATTGGTGA 59.446 45.455 0.00 0.00 42.66 4.02
5038 6337 3.695830 TTTTTCTGCCTAGTGATCGGT 57.304 42.857 0.00 0.00 0.00 4.69
5150 6452 8.192774 AGTATTGCATGATGGTCACATTTTTAG 58.807 33.333 0.00 0.00 37.47 1.85
5231 6558 9.199982 CTTTCAAATATGTTGAAGCATCTTTGT 57.800 29.630 13.66 0.00 40.59 2.83
5305 6632 4.260334 GCTAAACTAGCCTACAAAAGCG 57.740 45.455 0.00 0.00 45.95 4.68
5342 7176 8.362639 TGATACCGAGGGAGTACATTTTATAAC 58.637 37.037 0.00 0.00 0.00 1.89
5420 7256 8.940952 CATTTAAAAACAGAAGAACCCACAAAA 58.059 29.630 0.00 0.00 0.00 2.44
5520 7406 1.007118 TCTGGCTCATAGACACTCCCA 59.993 52.381 0.00 0.00 0.00 4.37
5755 7641 9.771915 AAAAATGTTTGTAGCATTCAACAAAAG 57.228 25.926 2.49 0.00 44.64 2.27
5828 7714 9.665719 ACTGTAGAAATTTGTTGGTGAAATTTT 57.334 25.926 0.00 0.00 41.10 1.82
5841 7727 9.404348 GTTGGTGAAATTTTTGAAAAATGTGTT 57.596 25.926 15.79 7.44 0.00 3.32
5908 7794 5.105957 ACACTTGCAAAATGTTCACACACTA 60.106 36.000 9.65 0.00 35.03 2.74
5914 7800 7.484140 TGCAAAATGTTCACACACTAATAACA 58.516 30.769 0.00 0.00 35.03 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.739196 GGCCGTTACGACAAGACCC 60.739 63.158 6.24 0.00 0.00 4.46
31 32 1.372004 CACGGCCGTTACGACAAGA 60.372 57.895 32.11 0.00 34.93 3.02
32 33 1.372004 TCACGGCCGTTACGACAAG 60.372 57.895 32.11 15.39 34.93 3.16
33 34 1.661197 GTCACGGCCGTTACGACAA 60.661 57.895 31.27 11.13 34.93 3.18
123 125 2.738521 TGAACGCTCCGAGCTTGC 60.739 61.111 18.14 8.35 39.60 4.01
130 134 2.738521 CCAGGTGTGAACGCTCCG 60.739 66.667 0.00 0.00 0.00 4.63
155 159 1.343142 AGTACCAATCAGTGTCACGCA 59.657 47.619 0.00 0.00 0.00 5.24
156 160 1.993370 GAGTACCAATCAGTGTCACGC 59.007 52.381 0.00 0.00 0.00 5.34
157 161 2.607187 GGAGTACCAATCAGTGTCACG 58.393 52.381 0.00 0.00 35.97 4.35
158 162 2.674177 CGGGAGTACCAATCAGTGTCAC 60.674 54.545 0.00 0.00 40.22 3.67
159 163 1.548719 CGGGAGTACCAATCAGTGTCA 59.451 52.381 0.00 0.00 40.22 3.58
160 164 1.822990 TCGGGAGTACCAATCAGTGTC 59.177 52.381 0.00 0.00 40.22 3.67
161 165 1.825474 CTCGGGAGTACCAATCAGTGT 59.175 52.381 0.00 0.00 40.22 3.55
162 166 1.471676 GCTCGGGAGTACCAATCAGTG 60.472 57.143 0.00 0.00 40.22 3.66
164 168 0.249073 CGCTCGGGAGTACCAATCAG 60.249 60.000 0.00 0.00 40.22 2.90
165 169 1.672854 CCGCTCGGGAGTACCAATCA 61.673 60.000 0.00 0.00 40.22 2.57
166 170 1.067582 CCGCTCGGGAGTACCAATC 59.932 63.158 0.00 0.00 40.22 2.67
168 172 2.036098 TCCGCTCGGGAGTACCAA 59.964 61.111 8.59 0.00 40.94 3.67
176 180 2.907917 CTACTCCCTCCGCTCGGG 60.908 72.222 8.59 0.00 43.38 5.14
179 183 2.787567 GGCACTACTCCCTCCGCTC 61.788 68.421 0.00 0.00 0.00 5.03
181 185 3.851128 GGGCACTACTCCCTCCGC 61.851 72.222 0.00 0.00 40.66 5.54
186 190 1.222113 GAAGCAGGGCACTACTCCC 59.778 63.158 0.00 0.00 44.25 4.30
187 191 1.153549 CGAAGCAGGGCACTACTCC 60.154 63.158 0.00 0.00 0.00 3.85
188 192 0.815734 TACGAAGCAGGGCACTACTC 59.184 55.000 0.00 0.00 0.00 2.59
189 193 0.531200 GTACGAAGCAGGGCACTACT 59.469 55.000 0.00 0.00 0.00 2.57
190 194 0.245539 TGTACGAAGCAGGGCACTAC 59.754 55.000 0.00 0.00 0.00 2.73
192 196 0.391661 CATGTACGAAGCAGGGCACT 60.392 55.000 0.00 0.00 0.00 4.40
193 197 1.982073 GCATGTACGAAGCAGGGCAC 61.982 60.000 0.00 0.00 0.00 5.01
194 198 1.745115 GCATGTACGAAGCAGGGCA 60.745 57.895 0.00 0.00 0.00 5.36
195 199 1.305219 TTGCATGTACGAAGCAGGGC 61.305 55.000 6.76 0.00 39.72 5.19
197 201 0.095245 CGTTGCATGTACGAAGCAGG 59.905 55.000 14.70 1.43 41.33 4.85
198 202 0.519175 GCGTTGCATGTACGAAGCAG 60.519 55.000 21.36 0.00 41.33 4.24
201 205 1.591248 GTTGCGTTGCATGTACGAAG 58.409 50.000 21.36 0.00 41.33 3.79
202 206 0.236187 GGTTGCGTTGCATGTACGAA 59.764 50.000 21.36 11.71 41.33 3.85
205 209 0.236187 TTCGGTTGCGTTGCATGTAC 59.764 50.000 0.00 0.00 38.76 2.90
206 210 0.236187 GTTCGGTTGCGTTGCATGTA 59.764 50.000 0.00 0.00 38.76 2.29
208 212 2.074353 CGTTCGGTTGCGTTGCATG 61.074 57.895 0.00 0.00 38.76 4.06
209 213 2.251075 CGTTCGGTTGCGTTGCAT 59.749 55.556 0.00 0.00 38.76 3.96
210 214 4.599434 GCGTTCGGTTGCGTTGCA 62.599 61.111 0.00 0.00 36.47 4.08
211 215 4.599434 TGCGTTCGGTTGCGTTGC 62.599 61.111 0.00 0.00 0.00 4.17
212 216 2.023461 TTGCGTTCGGTTGCGTTG 59.977 55.556 0.00 0.00 0.00 4.10
213 217 2.023601 GTTGCGTTCGGTTGCGTT 59.976 55.556 0.00 0.00 0.00 4.84
214 218 4.287967 CGTTGCGTTCGGTTGCGT 62.288 61.111 0.00 0.00 0.00 5.24
215 219 3.990806 TCGTTGCGTTCGGTTGCG 61.991 61.111 0.00 0.00 0.00 4.85
216 220 2.424640 GTCGTTGCGTTCGGTTGC 60.425 61.111 0.00 0.00 0.00 4.17
217 221 1.083657 CTGTCGTTGCGTTCGGTTG 60.084 57.895 0.00 0.00 0.00 3.77
238 242 3.723348 GTCAAGTGGGAACGCCGC 61.723 66.667 0.00 0.00 43.65 6.53
239 243 2.280524 TGTCAAGTGGGAACGCCG 60.281 61.111 0.00 0.00 43.65 6.46
240 244 2.258726 GGTGTCAAGTGGGAACGCC 61.259 63.158 0.00 0.00 43.65 5.68
241 245 0.818040 AAGGTGTCAAGTGGGAACGC 60.818 55.000 0.00 0.00 42.66 4.84
243 247 1.143073 AGGAAGGTGTCAAGTGGGAAC 59.857 52.381 0.00 0.00 0.00 3.62
244 248 1.142870 CAGGAAGGTGTCAAGTGGGAA 59.857 52.381 0.00 0.00 0.00 3.97
247 251 1.230635 CGCAGGAAGGTGTCAAGTGG 61.231 60.000 0.00 0.00 0.00 4.00
248 252 0.532862 ACGCAGGAAGGTGTCAAGTG 60.533 55.000 0.00 0.00 0.00 3.16
249 253 0.532862 CACGCAGGAAGGTGTCAAGT 60.533 55.000 0.00 0.00 0.00 3.16
250 254 1.845809 GCACGCAGGAAGGTGTCAAG 61.846 60.000 0.00 0.00 36.54 3.02
251 255 1.891919 GCACGCAGGAAGGTGTCAA 60.892 57.895 0.00 0.00 36.54 3.18
252 256 2.280797 GCACGCAGGAAGGTGTCA 60.281 61.111 0.00 0.00 36.54 3.58
253 257 3.414700 CGCACGCAGGAAGGTGTC 61.415 66.667 0.00 0.00 36.54 3.67
254 258 4.235762 ACGCACGCAGGAAGGTGT 62.236 61.111 0.00 0.00 36.54 4.16
255 259 3.716006 CACGCACGCAGGAAGGTG 61.716 66.667 0.00 0.00 37.22 4.00
285 289 3.060230 CCGGCGCTTAAATTTTAACAAGC 59.940 43.478 7.64 11.71 39.96 4.01
287 291 2.987821 GCCGGCGCTTAAATTTTAACAA 59.012 40.909 12.58 0.00 0.00 2.83
288 292 2.597520 GCCGGCGCTTAAATTTTAACA 58.402 42.857 12.58 0.00 0.00 2.41
289 293 1.580256 CGCCGGCGCTTAAATTTTAAC 59.420 47.619 38.48 0.00 0.00 2.01
290 294 1.897641 CGCCGGCGCTTAAATTTTAA 58.102 45.000 38.48 1.85 0.00 1.52
291 295 3.607777 CGCCGGCGCTTAAATTTTA 57.392 47.368 38.48 0.00 0.00 1.52
316 320 1.881252 GTGTATGTACCCGCAGCCG 60.881 63.158 0.00 0.00 0.00 5.52
317 321 0.391927 TTGTGTATGTACCCGCAGCC 60.392 55.000 0.00 0.00 0.00 4.85
318 322 0.725117 GTTGTGTATGTACCCGCAGC 59.275 55.000 0.00 0.00 0.00 5.25
320 324 2.418692 CTTGTTGTGTATGTACCCGCA 58.581 47.619 0.00 0.00 0.00 5.69
321 325 1.129811 GCTTGTTGTGTATGTACCCGC 59.870 52.381 0.00 0.00 0.00 6.13
322 326 2.418692 TGCTTGTTGTGTATGTACCCG 58.581 47.619 0.00 0.00 0.00 5.28
323 327 6.204108 GGTATATGCTTGTTGTGTATGTACCC 59.796 42.308 0.00 0.00 37.86 3.69
324 328 6.204108 GGGTATATGCTTGTTGTGTATGTACC 59.796 42.308 8.42 8.42 40.60 3.34
325 329 6.073980 CGGGTATATGCTTGTTGTGTATGTAC 60.074 42.308 0.00 0.00 0.00 2.90
331 669 3.267483 GACGGGTATATGCTTGTTGTGT 58.733 45.455 0.00 0.00 0.00 3.72
348 686 2.377310 CGTGCGTTTACAGGGACGG 61.377 63.158 7.61 0.00 45.60 4.79
355 693 1.276820 CCTACGTGCGTGCGTTTACA 61.277 55.000 11.14 0.00 43.04 2.41
356 694 1.277495 ACCTACGTGCGTGCGTTTAC 61.277 55.000 11.14 0.00 43.04 2.01
357 695 1.003262 GACCTACGTGCGTGCGTTTA 61.003 55.000 11.14 0.00 43.04 2.01
361 699 1.866496 GTAGACCTACGTGCGTGCG 60.866 63.158 7.55 0.00 37.94 5.34
362 700 1.069378 GTGTAGACCTACGTGCGTGC 61.069 60.000 7.55 0.00 38.85 5.34
363 701 0.791983 CGTGTAGACCTACGTGCGTG 60.792 60.000 7.55 0.00 38.85 5.34
365 703 4.354935 CGTGTAGACCTACGTGCG 57.645 61.111 0.00 4.19 38.85 5.34
369 707 2.610833 TGCTCATACGTGTAGACCTACG 59.389 50.000 0.00 0.00 45.19 3.51
370 708 4.515944 AGATGCTCATACGTGTAGACCTAC 59.484 45.833 0.00 0.41 36.63 3.18
371 709 4.715713 AGATGCTCATACGTGTAGACCTA 58.284 43.478 0.00 0.00 0.00 3.08
372 710 3.556999 AGATGCTCATACGTGTAGACCT 58.443 45.455 0.00 0.00 0.00 3.85
374 712 4.921547 TGAAGATGCTCATACGTGTAGAC 58.078 43.478 0.00 0.00 0.00 2.59
375 713 5.125578 ACTTGAAGATGCTCATACGTGTAGA 59.874 40.000 0.00 0.00 0.00 2.59
379 717 4.032217 GTCACTTGAAGATGCTCATACGTG 59.968 45.833 0.00 0.00 0.00 4.49
382 720 5.414360 TCAGTCACTTGAAGATGCTCATAC 58.586 41.667 0.00 0.00 0.00 2.39
396 750 1.676014 GCTATGCCGGTTCAGTCACTT 60.676 52.381 1.90 0.00 0.00 3.16
406 760 0.033601 TCCCAAAATGCTATGCCGGT 60.034 50.000 1.90 0.00 0.00 5.28
423 777 1.728971 CTGTGCTGACTTCGTGAATCC 59.271 52.381 0.00 0.00 0.00 3.01
438 792 0.924090 CGATTAAGAGGCGTCTGTGC 59.076 55.000 10.16 0.00 31.37 4.57
475 829 1.855513 TCGACGATGTTTGTTCGGTT 58.144 45.000 0.00 0.00 40.83 4.44
534 1050 2.293677 TGCTCGCAATTTACCCGAAAAA 59.706 40.909 0.00 0.00 0.00 1.94
535 1051 1.880675 TGCTCGCAATTTACCCGAAAA 59.119 42.857 0.00 0.00 0.00 2.29
536 1052 1.524848 TGCTCGCAATTTACCCGAAA 58.475 45.000 0.00 0.00 0.00 3.46
537 1053 1.524848 TTGCTCGCAATTTACCCGAA 58.475 45.000 0.00 0.00 0.00 4.30
538 1054 1.745232 ATTGCTCGCAATTTACCCGA 58.255 45.000 11.11 0.00 43.32 5.14
539 1055 2.612212 AGTATTGCTCGCAATTTACCCG 59.388 45.455 20.69 0.00 43.32 5.28
540 1056 4.814771 ACTAGTATTGCTCGCAATTTACCC 59.185 41.667 20.69 6.24 43.32 3.69
541 1057 5.986004 ACTAGTATTGCTCGCAATTTACC 57.014 39.130 20.69 8.30 43.32 2.85
544 1060 9.326413 ACTTAATACTAGTATTGCTCGCAATTT 57.674 29.630 30.16 12.71 43.32 1.82
545 1061 8.888579 ACTTAATACTAGTATTGCTCGCAATT 57.111 30.769 30.16 12.38 43.32 2.32
546 1062 8.361139 AGACTTAATACTAGTATTGCTCGCAAT 58.639 33.333 30.16 19.60 46.85 3.56
547 1063 7.713750 AGACTTAATACTAGTATTGCTCGCAA 58.286 34.615 30.16 17.82 40.47 4.85
548 1064 7.273320 AGACTTAATACTAGTATTGCTCGCA 57.727 36.000 30.16 12.49 36.52 5.10
549 1065 9.279904 CATAGACTTAATACTAGTATTGCTCGC 57.720 37.037 30.16 18.18 36.52 5.03
580 1096 4.149598 GTCTATCCAACCCACCAAAGTTT 58.850 43.478 0.00 0.00 0.00 2.66
584 1100 2.066592 TGGTCTATCCAACCCACCAAA 58.933 47.619 0.00 0.00 44.12 3.28
605 1470 6.637365 CGTGATTAGACGGTTAGCATAAAAG 58.363 40.000 0.00 0.00 35.65 2.27
629 1494 0.322546 ACCCTTCATCGAAGCAACCC 60.323 55.000 0.00 0.00 38.24 4.11
635 1500 2.076863 GGTGTGAACCCTTCATCGAAG 58.923 52.381 0.00 0.00 42.47 3.79
646 1511 2.978010 CACGGCCAGGTGTGAACC 60.978 66.667 2.24 0.00 38.36 3.62
670 1542 2.693762 CCCTGCCAATCACAGCACG 61.694 63.158 0.00 0.00 34.68 5.34
671 1543 1.303561 TCCCTGCCAATCACAGCAC 60.304 57.895 0.00 0.00 34.68 4.40
672 1544 1.001764 CTCCCTGCCAATCACAGCA 60.002 57.895 0.00 0.00 37.46 4.41
673 1545 2.413142 GCTCCCTGCCAATCACAGC 61.413 63.158 0.00 0.00 33.65 4.40
674 1546 2.110967 CGCTCCCTGCCAATCACAG 61.111 63.158 0.00 0.00 38.78 3.66
675 1547 2.046023 CGCTCCCTGCCAATCACA 60.046 61.111 0.00 0.00 38.78 3.58
676 1548 2.109126 GTCGCTCCCTGCCAATCAC 61.109 63.158 0.00 0.00 38.78 3.06
677 1549 2.244117 GAGTCGCTCCCTGCCAATCA 62.244 60.000 0.00 0.00 38.78 2.57
678 1550 1.522580 GAGTCGCTCCCTGCCAATC 60.523 63.158 0.00 0.00 38.78 2.67
730 1602 0.162082 GCGTTGCATGTACGAACGAA 59.838 50.000 21.36 0.00 44.04 3.85
731 1603 0.940047 TGCGTTGCATGTACGAACGA 60.940 50.000 21.36 7.60 44.04 3.85
732 1604 0.111045 TTGCGTTGCATGTACGAACG 60.111 50.000 21.36 17.26 44.11 3.95
733 1605 1.314581 GTTGCGTTGCATGTACGAAC 58.685 50.000 21.36 17.50 41.33 3.95
865 1744 1.672363 CGGCGTCTATATATACCCGCA 59.328 52.381 22.76 0.00 42.63 5.69
911 1790 3.545633 GCTGCGCTATAGTATGTTTTGC 58.454 45.455 9.73 0.00 0.00 3.68
921 1800 0.390860 AGACCTTGGCTGCGCTATAG 59.609 55.000 9.73 0.00 0.00 1.31
922 1801 0.104855 CAGACCTTGGCTGCGCTATA 59.895 55.000 9.73 0.00 29.34 1.31
923 1802 1.153289 CAGACCTTGGCTGCGCTAT 60.153 57.895 9.73 0.00 29.34 2.97
929 1808 2.039405 GCTCTGCAGACCTTGGCTG 61.039 63.158 13.74 1.19 42.51 4.85
972 1859 3.176708 CGGGCTGCGTGTATGTATATAC 58.823 50.000 5.89 5.89 39.69 1.47
976 1863 1.594293 GCGGGCTGCGTGTATGTAT 60.594 57.895 0.81 0.00 0.00 2.29
1014 1903 2.586792 GGGCAGAAGGAGACGCAT 59.413 61.111 0.00 0.00 0.00 4.73
1117 2012 0.252467 AACTCCAGGAGGTCCCTCTG 60.252 60.000 21.31 8.96 45.60 3.35
1149 2044 3.118454 CTGTTGGCGCCGATCGTT 61.118 61.111 21.90 0.00 41.07 3.85
1151 2046 3.709880 TACCTGTTGGCGCCGATCG 62.710 63.158 21.90 13.69 42.12 3.69
1253 2183 6.493978 CAGAGCCATAGTATACATCGATCAG 58.506 44.000 5.50 0.00 0.00 2.90
1274 2204 1.131638 AGGACCAGTTCACAAGCAGA 58.868 50.000 0.00 0.00 0.00 4.26
1359 2299 5.818857 TCCTACGTCTGTTTTGTAAGCTTTT 59.181 36.000 3.20 0.00 0.00 2.27
1363 2303 4.084171 GGTTCCTACGTCTGTTTTGTAAGC 60.084 45.833 0.00 0.00 0.00 3.09
1364 2304 5.051816 TGGTTCCTACGTCTGTTTTGTAAG 58.948 41.667 0.00 0.00 0.00 2.34
1366 2306 4.669206 TGGTTCCTACGTCTGTTTTGTA 57.331 40.909 0.00 0.00 0.00 2.41
1368 2308 3.875134 AGTTGGTTCCTACGTCTGTTTTG 59.125 43.478 0.00 0.00 0.00 2.44
1392 2332 4.276926 GGGATCTTTAATGCTGGCTACTTG 59.723 45.833 0.00 0.00 0.00 3.16
1393 2333 4.079787 TGGGATCTTTAATGCTGGCTACTT 60.080 41.667 0.00 0.00 0.00 2.24
1394 2334 3.459598 TGGGATCTTTAATGCTGGCTACT 59.540 43.478 0.00 0.00 0.00 2.57
1395 2335 3.820557 TGGGATCTTTAATGCTGGCTAC 58.179 45.455 0.00 0.00 0.00 3.58
1396 2336 4.079787 AGTTGGGATCTTTAATGCTGGCTA 60.080 41.667 0.00 0.00 0.00 3.93
1397 2337 3.026694 GTTGGGATCTTTAATGCTGGCT 58.973 45.455 0.00 0.00 0.00 4.75
1398 2338 3.026694 AGTTGGGATCTTTAATGCTGGC 58.973 45.455 0.00 0.00 0.00 4.85
1399 2339 3.181483 GCAGTTGGGATCTTTAATGCTGG 60.181 47.826 0.00 0.00 0.00 4.85
1422 2362 6.322969 TGAAAGGAGTACTATAATCAAGCCGA 59.677 38.462 0.00 0.00 0.00 5.54
1423 2363 6.513180 TGAAAGGAGTACTATAATCAAGCCG 58.487 40.000 0.00 0.00 0.00 5.52
1425 2365 8.994170 GGAATGAAAGGAGTACTATAATCAAGC 58.006 37.037 0.00 0.00 0.00 4.01
1929 2900 9.383519 AGTCGCTTTAGAGATTTCATTTCAATA 57.616 29.630 0.00 0.00 0.00 1.90
1930 2901 8.273780 AGTCGCTTTAGAGATTTCATTTCAAT 57.726 30.769 0.00 0.00 0.00 2.57
1931 2902 7.672983 AGTCGCTTTAGAGATTTCATTTCAA 57.327 32.000 0.00 0.00 0.00 2.69
1932 2903 7.672983 AAGTCGCTTTAGAGATTTCATTTCA 57.327 32.000 0.00 0.00 0.00 2.69
1951 2922 4.521943 CGTCCGTTCCTAACTATAAGTCG 58.478 47.826 0.00 0.00 0.00 4.18
1952 2923 4.576463 TCCGTCCGTTCCTAACTATAAGTC 59.424 45.833 0.00 0.00 0.00 3.01
1954 2925 4.578105 ACTCCGTCCGTTCCTAACTATAAG 59.422 45.833 0.00 0.00 0.00 1.73
1960 2931 3.790152 AATACTCCGTCCGTTCCTAAC 57.210 47.619 0.00 0.00 0.00 2.34
1965 2936 3.508744 TGGTTAATACTCCGTCCGTTC 57.491 47.619 0.00 0.00 0.00 3.95
1972 2943 4.693566 TGTTCTTGCTTGGTTAATACTCCG 59.306 41.667 0.00 0.00 0.00 4.63
2107 3084 2.834549 TGGATCAAACTCTCTGGAGGTC 59.165 50.000 0.00 0.00 38.79 3.85
2113 3090 9.605275 TCAATATAAAGTGGATCAAACTCTCTG 57.395 33.333 0.00 0.00 0.00 3.35
2255 3264 4.127171 GGTCGGAAATACAGTGCATATGT 58.873 43.478 11.66 11.66 34.62 2.29
2256 3265 3.184379 CGGTCGGAAATACAGTGCATATG 59.816 47.826 0.00 0.00 0.00 1.78
2311 3325 7.575499 AAAGCTAGCTATAGGTTGGGATAAT 57.425 36.000 19.70 0.00 46.44 1.28
2343 3359 8.157476 ACCAACCAGTATGTCATAGATTAATCC 58.843 37.037 11.92 0.00 0.00 3.01
2380 3399 4.106029 TGCGCCGATATACTCCTTAATC 57.894 45.455 4.18 0.00 0.00 1.75
2451 3470 1.363744 CACGCATTCAAGGAGAGGTC 58.636 55.000 0.00 0.00 0.00 3.85
2463 3482 1.227943 ACTGTCACTGCCACGCATT 60.228 52.632 0.00 0.00 38.13 3.56
2464 3483 1.962822 CACTGTCACTGCCACGCAT 60.963 57.895 0.00 0.00 38.13 4.73
2671 3692 9.087424 GAAGTAACAAAGTTTGAATTGAGCTTT 57.913 29.630 22.23 5.24 0.00 3.51
2796 3820 2.582728 CTAGAGCAGCTGGTCAGAAG 57.417 55.000 38.89 29.23 44.42 2.85
2836 3995 8.579850 TCATTGAGCATCTTTAATTAACTGGT 57.420 30.769 0.00 2.15 34.92 4.00
2849 4008 3.044235 TGTGTCGTTCATTGAGCATCT 57.956 42.857 1.35 0.00 34.92 2.90
2850 4009 3.486375 CCATGTGTCGTTCATTGAGCATC 60.486 47.826 1.35 0.00 0.00 3.91
2851 4010 2.421073 CCATGTGTCGTTCATTGAGCAT 59.579 45.455 1.35 0.00 0.00 3.79
2852 4011 1.805943 CCATGTGTCGTTCATTGAGCA 59.194 47.619 1.35 0.00 0.00 4.26
2853 4012 2.076100 TCCATGTGTCGTTCATTGAGC 58.924 47.619 0.00 0.00 0.00 4.26
2854 4013 4.747540 TTTCCATGTGTCGTTCATTGAG 57.252 40.909 0.00 0.00 0.00 3.02
2855 4014 5.506686 TTTTTCCATGTGTCGTTCATTGA 57.493 34.783 0.00 0.00 0.00 2.57
2856 4015 6.768029 AATTTTTCCATGTGTCGTTCATTG 57.232 33.333 0.00 0.00 0.00 2.82
2858 4017 7.083858 CAGTAATTTTTCCATGTGTCGTTCAT 58.916 34.615 0.00 0.00 0.00 2.57
2859 4018 6.434596 CAGTAATTTTTCCATGTGTCGTTCA 58.565 36.000 0.00 0.00 0.00 3.18
2860 4019 5.342259 GCAGTAATTTTTCCATGTGTCGTTC 59.658 40.000 0.00 0.00 0.00 3.95
2861 4020 5.219633 GCAGTAATTTTTCCATGTGTCGTT 58.780 37.500 0.00 0.00 0.00 3.85
2862 4021 4.612712 CGCAGTAATTTTTCCATGTGTCGT 60.613 41.667 0.00 0.00 0.00 4.34
2864 4023 4.165779 CCGCAGTAATTTTTCCATGTGTC 58.834 43.478 0.00 0.00 0.00 3.67
2865 4024 3.572255 ACCGCAGTAATTTTTCCATGTGT 59.428 39.130 0.00 0.00 0.00 3.72
2866 4025 4.173036 ACCGCAGTAATTTTTCCATGTG 57.827 40.909 0.00 0.00 0.00 3.21
2867 4026 4.864704 AACCGCAGTAATTTTTCCATGT 57.135 36.364 0.00 0.00 0.00 3.21
2870 4029 7.450124 TGTATTAACCGCAGTAATTTTTCCA 57.550 32.000 0.00 0.00 0.00 3.53
2871 4030 8.920509 ATTGTATTAACCGCAGTAATTTTTCC 57.079 30.769 0.00 0.00 0.00 3.13
2906 4065 9.796120 CTTCTTACAATGTTTGGTTCAAGTAAA 57.204 29.630 0.00 0.00 34.12 2.01
2907 4066 9.179909 TCTTCTTACAATGTTTGGTTCAAGTAA 57.820 29.630 0.00 0.00 34.12 2.24
2908 4067 8.740123 TCTTCTTACAATGTTTGGTTCAAGTA 57.260 30.769 0.00 0.00 34.12 2.24
2909 4068 7.639113 TCTTCTTACAATGTTTGGTTCAAGT 57.361 32.000 0.00 0.00 34.12 3.16
2910 4069 8.405531 TCTTCTTCTTACAATGTTTGGTTCAAG 58.594 33.333 0.00 0.00 34.12 3.02
2911 4070 8.287439 TCTTCTTCTTACAATGTTTGGTTCAA 57.713 30.769 0.00 0.00 34.12 2.69
2912 4071 7.873719 TCTTCTTCTTACAATGTTTGGTTCA 57.126 32.000 0.00 0.00 34.12 3.18
2913 4072 9.581099 TTTTCTTCTTCTTACAATGTTTGGTTC 57.419 29.630 0.00 0.00 34.12 3.62
2914 4073 9.936759 TTTTTCTTCTTCTTACAATGTTTGGTT 57.063 25.926 0.00 0.00 34.12 3.67
2915 4074 9.586435 CTTTTTCTTCTTCTTACAATGTTTGGT 57.414 29.630 0.00 0.00 34.12 3.67
2916 4075 9.801873 TCTTTTTCTTCTTCTTACAATGTTTGG 57.198 29.630 0.00 0.00 34.12 3.28
2920 4079 9.956720 CACATCTTTTTCTTCTTCTTACAATGT 57.043 29.630 0.00 0.00 0.00 2.71
2924 4083 9.342308 ACATCACATCTTTTTCTTCTTCTTACA 57.658 29.630 0.00 0.00 0.00 2.41
2925 4084 9.604626 CACATCACATCTTTTTCTTCTTCTTAC 57.395 33.333 0.00 0.00 0.00 2.34
2926 4085 8.786898 CCACATCACATCTTTTTCTTCTTCTTA 58.213 33.333 0.00 0.00 0.00 2.10
2927 4086 7.655490 CCACATCACATCTTTTTCTTCTTCTT 58.345 34.615 0.00 0.00 0.00 2.52
2928 4087 6.294397 GCCACATCACATCTTTTTCTTCTTCT 60.294 38.462 0.00 0.00 0.00 2.85
2929 4088 5.860716 GCCACATCACATCTTTTTCTTCTTC 59.139 40.000 0.00 0.00 0.00 2.87
2930 4089 5.302568 TGCCACATCACATCTTTTTCTTCTT 59.697 36.000 0.00 0.00 0.00 2.52
2931 4090 4.828939 TGCCACATCACATCTTTTTCTTCT 59.171 37.500 0.00 0.00 0.00 2.85
2932 4091 5.125100 TGCCACATCACATCTTTTTCTTC 57.875 39.130 0.00 0.00 0.00 2.87
2933 4092 5.534207 TTGCCACATCACATCTTTTTCTT 57.466 34.783 0.00 0.00 0.00 2.52
2934 4093 5.534207 TTTGCCACATCACATCTTTTTCT 57.466 34.783 0.00 0.00 0.00 2.52
2935 4094 6.601741 TTTTTGCCACATCACATCTTTTTC 57.398 33.333 0.00 0.00 0.00 2.29
3005 4164 9.865321 AGCTATTCGACTTTATAAGTTGTACAA 57.135 29.630 3.59 3.59 43.03 2.41
3006 4165 9.865321 AAGCTATTCGACTTTATAAGTTGTACA 57.135 29.630 0.00 0.00 43.03 2.90
3010 4169 9.798885 GCATAAGCTATTCGACTTTATAAGTTG 57.201 33.333 0.00 1.18 38.85 3.16
3011 4170 9.542462 TGCATAAGCTATTCGACTTTATAAGTT 57.458 29.630 0.00 0.00 41.25 2.66
3012 4171 9.712305 ATGCATAAGCTATTCGACTTTATAAGT 57.288 29.630 0.00 0.00 42.89 2.24
3013 4172 9.964253 CATGCATAAGCTATTCGACTTTATAAG 57.036 33.333 0.00 0.00 42.74 1.73
3014 4173 9.705290 TCATGCATAAGCTATTCGACTTTATAA 57.295 29.630 0.00 0.00 42.74 0.98
3015 4174 9.875691 ATCATGCATAAGCTATTCGACTTTATA 57.124 29.630 0.00 0.00 42.74 0.98
3016 4175 8.783833 ATCATGCATAAGCTATTCGACTTTAT 57.216 30.769 0.00 0.00 42.74 1.40
3017 4176 8.607441 AATCATGCATAAGCTATTCGACTTTA 57.393 30.769 0.00 0.00 42.74 1.85
3018 4177 7.502120 AATCATGCATAAGCTATTCGACTTT 57.498 32.000 0.00 0.00 42.74 2.66
3019 4178 8.607441 TTAATCATGCATAAGCTATTCGACTT 57.393 30.769 0.00 0.00 42.74 3.01
3020 4179 8.783833 ATTAATCATGCATAAGCTATTCGACT 57.216 30.769 0.00 0.00 42.74 4.18
3021 4180 7.843204 CGATTAATCATGCATAAGCTATTCGAC 59.157 37.037 15.57 0.00 42.74 4.20
3022 4181 7.759433 TCGATTAATCATGCATAAGCTATTCGA 59.241 33.333 15.57 6.27 42.74 3.71
3023 4182 7.843204 GTCGATTAATCATGCATAAGCTATTCG 59.157 37.037 15.57 3.90 42.74 3.34
3024 4183 8.877779 AGTCGATTAATCATGCATAAGCTATTC 58.122 33.333 15.57 0.00 42.74 1.75
3025 4184 8.783833 AGTCGATTAATCATGCATAAGCTATT 57.216 30.769 15.57 0.00 42.74 1.73
3026 4185 7.493971 GGAGTCGATTAATCATGCATAAGCTAT 59.506 37.037 15.57 0.00 42.74 2.97
3027 4186 6.813649 GGAGTCGATTAATCATGCATAAGCTA 59.186 38.462 15.57 0.00 42.74 3.32
3028 4187 5.641209 GGAGTCGATTAATCATGCATAAGCT 59.359 40.000 15.57 0.00 42.74 3.74
3029 4188 5.163814 GGGAGTCGATTAATCATGCATAAGC 60.164 44.000 15.57 0.00 42.57 3.09
3030 4189 5.352569 GGGGAGTCGATTAATCATGCATAAG 59.647 44.000 15.57 0.00 0.00 1.73
3031 4190 5.221823 TGGGGAGTCGATTAATCATGCATAA 60.222 40.000 15.57 0.00 0.00 1.90
3032 4191 4.285775 TGGGGAGTCGATTAATCATGCATA 59.714 41.667 15.57 0.00 0.00 3.14
3033 4192 3.072915 TGGGGAGTCGATTAATCATGCAT 59.927 43.478 15.57 0.00 0.00 3.96
3034 4193 2.437651 TGGGGAGTCGATTAATCATGCA 59.562 45.455 15.57 0.00 0.00 3.96
3035 4194 3.126001 TGGGGAGTCGATTAATCATGC 57.874 47.619 15.57 5.89 0.00 4.06
3036 4195 4.898320 TGATGGGGAGTCGATTAATCATG 58.102 43.478 15.57 0.42 0.00 3.07
3037 4196 5.072329 AGTTGATGGGGAGTCGATTAATCAT 59.928 40.000 15.57 0.66 0.00 2.45
3038 4197 4.408921 AGTTGATGGGGAGTCGATTAATCA 59.591 41.667 15.57 0.39 0.00 2.57
3039 4198 4.962155 AGTTGATGGGGAGTCGATTAATC 58.038 43.478 5.30 5.30 0.00 1.75
3040 4199 6.494666 TTAGTTGATGGGGAGTCGATTAAT 57.505 37.500 0.00 0.00 0.00 1.40
3041 4200 5.943349 TTAGTTGATGGGGAGTCGATTAA 57.057 39.130 0.00 0.00 0.00 1.40
3042 4201 5.943349 TTTAGTTGATGGGGAGTCGATTA 57.057 39.130 0.00 0.00 0.00 1.75
3043 4202 4.837093 TTTAGTTGATGGGGAGTCGATT 57.163 40.909 0.00 0.00 0.00 3.34
3044 4203 4.837093 TTTTAGTTGATGGGGAGTCGAT 57.163 40.909 0.00 0.00 0.00 3.59
3045 4204 4.564821 CCTTTTTAGTTGATGGGGAGTCGA 60.565 45.833 0.00 0.00 0.00 4.20
3046 4205 3.689649 CCTTTTTAGTTGATGGGGAGTCG 59.310 47.826 0.00 0.00 0.00 4.18
3083 4276 8.559536 CGGATTTTATAGCTTGTACACAATCAT 58.440 33.333 0.00 0.00 35.02 2.45
3090 4283 7.554835 ACCATTTCGGATTTTATAGCTTGTACA 59.445 33.333 0.00 0.00 38.63 2.90
3091 4284 7.927048 ACCATTTCGGATTTTATAGCTTGTAC 58.073 34.615 0.00 0.00 38.63 2.90
3096 4289 7.012421 GTCAAGACCATTTCGGATTTTATAGCT 59.988 37.037 0.00 0.00 38.63 3.32
3119 4312 8.946085 GTTGATGTGATTAGTTATTCTTGGTCA 58.054 33.333 0.00 0.00 0.00 4.02
3133 4330 6.942005 AGATCTTGGTGTTGTTGATGTGATTA 59.058 34.615 0.00 0.00 0.00 1.75
3144 4341 6.213600 ACTCCATTAGTAGATCTTGGTGTTGT 59.786 38.462 0.00 0.00 36.36 3.32
3154 4351 7.714703 AGTTTACGGAACTCCATTAGTAGATC 58.285 38.462 1.12 0.00 45.40 2.75
3155 4352 7.657023 AGTTTACGGAACTCCATTAGTAGAT 57.343 36.000 1.12 0.00 45.40 1.98
3171 4368 1.133790 CGGGAGTAGTGGAGTTTACGG 59.866 57.143 0.00 0.00 0.00 4.02
3190 4387 1.545614 CGTTCACAGTCGTTCCACCG 61.546 60.000 0.00 0.00 0.00 4.94
3191 4388 1.828331 GCGTTCACAGTCGTTCCACC 61.828 60.000 0.00 0.00 0.00 4.61
3203 4400 5.203060 AGGATATTTAGAGGAGCGTTCAC 57.797 43.478 0.53 0.00 0.00 3.18
3206 4403 7.039923 TCGATTTAGGATATTTAGAGGAGCGTT 60.040 37.037 0.00 0.00 0.00 4.84
3207 4404 6.433404 TCGATTTAGGATATTTAGAGGAGCGT 59.567 38.462 0.00 0.00 0.00 5.07
3223 4420 5.765176 TGTCGTGTACCATATCGATTTAGG 58.235 41.667 1.71 6.07 34.93 2.69
3230 4427 4.852104 GCTATCTTGTCGTGTACCATATCG 59.148 45.833 0.00 0.00 0.00 2.92
3231 4428 5.162075 GGCTATCTTGTCGTGTACCATATC 58.838 45.833 0.00 0.00 0.00 1.63
3233 4430 3.004002 CGGCTATCTTGTCGTGTACCATA 59.996 47.826 0.00 0.00 0.00 2.74
3234 4431 2.223735 CGGCTATCTTGTCGTGTACCAT 60.224 50.000 0.00 0.00 0.00 3.55
3243 4440 1.112113 TCCCTCACGGCTATCTTGTC 58.888 55.000 0.00 0.00 0.00 3.18
3246 4443 1.392710 CGGTCCCTCACGGCTATCTT 61.393 60.000 0.00 0.00 0.00 2.40
3248 4445 2.073037 GACGGTCCCTCACGGCTATC 62.073 65.000 0.00 0.00 34.70 2.08
3256 4453 2.525629 TTGCCTGACGGTCCCTCA 60.526 61.111 5.55 0.00 0.00 3.86
3260 4457 2.100631 CGATGTTGCCTGACGGTCC 61.101 63.158 5.55 0.00 0.00 4.46
3261 4458 2.740714 GCGATGTTGCCTGACGGTC 61.741 63.158 0.00 0.00 0.00 4.79
3271 4468 2.009108 CGGGTGATCAGCGATGTTG 58.991 57.895 18.14 0.92 0.00 3.33
3272 4469 1.815421 GCGGGTGATCAGCGATGTT 60.815 57.895 18.14 0.00 0.00 2.71
3278 4475 2.903855 CCATGGCGGGTGATCAGC 60.904 66.667 16.65 16.65 0.00 4.26
3281 4478 2.588877 CGACCATGGCGGGTGATC 60.589 66.667 13.04 0.00 42.53 2.92
3643 4868 6.624352 TGAAACTAGCTTATCCATGCAATC 57.376 37.500 0.00 0.00 0.00 2.67
3763 4991 6.851222 ATGGCAAGAATAATGAGAGTTACG 57.149 37.500 0.00 0.00 0.00 3.18
3764 4992 9.494271 TCATATGGCAAGAATAATGAGAGTTAC 57.506 33.333 2.13 0.00 0.00 2.50
3809 5067 9.530129 CGAAATTTTATCGCATAAGTCCTAATC 57.470 33.333 0.00 0.00 33.07 1.75
3924 5193 2.360165 CCACTTGGGATAATTGCTGAGC 59.640 50.000 0.00 0.00 40.01 4.26
3937 5206 2.442236 ATATTCACAGGCCACTTGGG 57.558 50.000 5.01 0.00 40.85 4.12
3962 5232 5.281693 TCAAACTAAGAACATGCACATCG 57.718 39.130 0.00 0.00 0.00 3.84
3964 5234 5.922544 GCTTTCAAACTAAGAACATGCACAT 59.077 36.000 0.00 0.00 0.00 3.21
3999 5269 4.196193 CCGTTGAACACCCATATGTATGT 58.804 43.478 1.24 2.71 30.75 2.29
4016 5286 2.401766 GGCTCATCTGCACCCGTTG 61.402 63.158 0.00 0.00 34.04 4.10
4063 5333 7.374272 TCTGCATCCGTGAAAAATAAATTCAA 58.626 30.769 0.00 0.00 38.44 2.69
4065 5335 7.701924 TCATCTGCATCCGTGAAAAATAAATTC 59.298 33.333 0.00 0.00 0.00 2.17
4074 5344 1.372582 GCTCATCTGCATCCGTGAAA 58.627 50.000 0.00 0.00 0.00 2.69
4075 5345 0.462581 GGCTCATCTGCATCCGTGAA 60.463 55.000 0.00 0.00 34.04 3.18
4079 5349 2.664185 CGGGCTCATCTGCATCCG 60.664 66.667 0.00 0.00 33.14 4.18
4082 5360 4.575973 GCCCGGGCTCATCTGCAT 62.576 66.667 38.76 0.00 38.26 3.96
4093 5371 1.999634 AATCCAATCCTGAGCCCGGG 62.000 60.000 19.09 19.09 40.31 5.73
4350 5633 4.454847 GGATCCATGCATACATCTTGTCTG 59.545 45.833 6.95 0.00 32.87 3.51
4395 5678 8.853345 CAGCATTTGTTATTATTGTGTTCAGAC 58.147 33.333 0.00 0.00 0.00 3.51
4396 5679 8.575589 ACAGCATTTGTTATTATTGTGTTCAGA 58.424 29.630 0.00 0.00 36.31 3.27
4419 5702 1.000506 ACCCTGTACACGTAGCAACAG 59.999 52.381 10.25 10.25 39.22 3.16
4499 5782 1.154205 GGCGATGACCTTGATGGACG 61.154 60.000 0.00 0.00 39.71 4.79
4953 6239 1.001406 CACCTTCTTCTCTCGTTGGCT 59.999 52.381 0.00 0.00 0.00 4.75
5026 6316 2.852449 TGAGCTAGACCGATCACTAGG 58.148 52.381 15.50 2.68 37.25 3.02
5038 6337 5.653769 CCTTTGGATTGGATTTTGAGCTAGA 59.346 40.000 0.00 0.00 0.00 2.43
5257 6584 9.849166 CCACCAAAACGTCTTATATTATTTTGT 57.151 29.630 0.00 0.00 36.00 2.83
5305 6632 5.801380 TCCCTCGGTATCAAAATATAAGGC 58.199 41.667 0.00 0.00 0.00 4.35
5394 7229 8.485976 TTTGTGGGTTCTTCTGTTTTTAAATG 57.514 30.769 0.00 0.00 0.00 2.32
5420 7256 7.067496 TGATTCTCTCAGTTTACTCCTGTTT 57.933 36.000 0.00 0.00 0.00 2.83
5465 7301 1.967319 CCAAGTGTTGTAGTGCCAGT 58.033 50.000 0.00 0.00 0.00 4.00
5468 7304 0.310854 GTGCCAAGTGTTGTAGTGCC 59.689 55.000 0.00 0.00 0.00 5.01
5520 7406 0.395312 AACGGTCGAGGAACCACATT 59.605 50.000 0.00 0.00 39.43 2.71
5729 7615 9.771915 CTTTTGTTGAATGCTACAAACATTTTT 57.228 25.926 12.33 0.00 44.98 1.94
5742 7628 4.259371 CGTGTGAACACTTTTGTTGAATGC 60.259 41.667 11.55 0.00 46.43 3.56
5755 7641 1.064952 CCCTTTGGAACGTGTGAACAC 59.935 52.381 3.41 3.41 43.15 3.32
5812 7698 9.971922 ACATTTTTCAAAAATTTCACCAACAAA 57.028 22.222 5.29 0.00 0.00 2.83
5813 7699 9.403110 CACATTTTTCAAAAATTTCACCAACAA 57.597 25.926 5.29 0.00 0.00 2.83
5814 7700 8.571336 ACACATTTTTCAAAAATTTCACCAACA 58.429 25.926 5.29 0.00 0.00 3.33
5815 7701 8.962857 ACACATTTTTCAAAAATTTCACCAAC 57.037 26.923 5.29 0.00 0.00 3.77
5816 7702 9.971922 AAACACATTTTTCAAAAATTTCACCAA 57.028 22.222 5.29 0.00 0.00 3.67
5817 7703 9.403110 CAAACACATTTTTCAAAAATTTCACCA 57.597 25.926 5.29 0.00 0.00 4.17
5818 7704 9.617975 TCAAACACATTTTTCAAAAATTTCACC 57.382 25.926 5.29 0.00 0.00 4.02
5820 7706 9.617975 GGTCAAACACATTTTTCAAAAATTTCA 57.382 25.926 5.29 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.