Multiple sequence alignment - TraesCS1D01G398700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G398700 chr1D 100.000 2659 0 0 1 2659 465582265 465584923 0.000000e+00 4911.0
1 TraesCS1D01G398700 chr1D 85.926 135 17 2 2132 2264 193783606 193783740 2.760000e-30 143.0
2 TraesCS1D01G398700 chr1D 81.875 160 26 3 1934 2091 416407396 416407238 5.970000e-27 132.0
3 TraesCS1D01G398700 chr1D 80.690 145 27 1 1948 2092 449971171 449971314 7.780000e-21 111.0
4 TraesCS1D01G398700 chr1A 94.977 1095 31 14 795 1875 557989011 557990095 0.000000e+00 1696.0
5 TraesCS1D01G398700 chr1A 88.116 791 52 15 1891 2659 557990080 557990850 0.000000e+00 902.0
6 TraesCS1D01G398700 chr1A 90.728 302 16 9 386 676 557988617 557988917 2.480000e-105 392.0
7 TraesCS1D01G398700 chr1A 91.011 267 12 9 386 641 557981289 557981554 1.510000e-92 350.0
8 TraesCS1D01G398700 chr1A 78.947 323 42 13 632 947 557983274 557983577 2.090000e-46 196.0
9 TraesCS1D01G398700 chr1B 86.686 1397 72 43 386 1715 642495164 642496513 0.000000e+00 1445.0
10 TraesCS1D01G398700 chr5A 92.105 380 23 3 11 386 552597767 552597391 1.810000e-146 529.0
11 TraesCS1D01G398700 chr5A 84.106 151 24 0 1322 1472 7453746 7453896 2.130000e-31 147.0
12 TraesCS1D01G398700 chr7D 90.981 377 28 4 11 384 69478682 69478309 1.100000e-138 503.0
13 TraesCS1D01G398700 chr7D 90.716 377 30 4 11 385 4659782 4659409 5.110000e-137 497.0
14 TraesCS1D01G398700 chr7D 90.526 380 29 7 11 388 100851986 100852360 1.840000e-136 496.0
15 TraesCS1D01G398700 chr7D 84.868 152 23 0 1330 1481 619113052 619113203 1.270000e-33 154.0
16 TraesCS1D01G398700 chr7D 79.720 143 28 1 1950 2092 478369845 478369704 4.680000e-18 102.0
17 TraesCS1D01G398700 chr3D 91.375 371 24 4 11 376 595246319 595245952 3.950000e-138 501.0
18 TraesCS1D01G398700 chr3D 78.383 532 76 18 2151 2653 98644381 98644902 2.570000e-80 309.0
19 TraesCS1D01G398700 chr3D 81.313 396 46 12 2282 2659 47350941 47350556 2.000000e-76 296.0
20 TraesCS1D01G398700 chr3D 86.719 128 16 1 2132 2258 407112082 407112209 9.920000e-30 141.0
21 TraesCS1D01G398700 chr3D 84.848 132 18 2 2132 2261 427757948 427757817 5.970000e-27 132.0
22 TraesCS1D01G398700 chr2D 90.501 379 30 4 12 388 31824765 31824391 1.840000e-136 496.0
23 TraesCS1D01G398700 chr2D 81.250 272 43 4 2279 2542 552144642 552144913 2.070000e-51 213.0
24 TraesCS1D01G398700 chr2D 80.405 148 25 4 1326 1471 8338685 8338830 2.800000e-20 110.0
25 TraesCS1D01G398700 chrUn 90.476 378 31 3 11 386 132212851 132213225 6.610000e-136 494.0
26 TraesCS1D01G398700 chr2A 90.263 380 33 3 11 389 15069143 15069519 6.610000e-136 494.0
27 TraesCS1D01G398700 chr2A 75.543 736 136 28 1951 2653 496390070 496389346 3.300000e-84 322.0
28 TraesCS1D01G398700 chr4D 90.263 380 29 6 11 387 425281405 425281031 8.550000e-135 490.0
29 TraesCS1D01G398700 chr4D 80.000 425 63 12 2132 2539 62115940 62115521 7.200000e-76 294.0
30 TraesCS1D01G398700 chr4D 79.717 424 67 10 2135 2542 497254125 497254545 3.350000e-74 289.0
31 TraesCS1D01G398700 chr4D 87.179 117 14 1 1934 2049 303847311 303847195 5.970000e-27 132.0
32 TraesCS1D01G398700 chr4D 79.452 146 29 1 1935 2080 94985286 94985142 4.680000e-18 102.0
33 TraesCS1D01G398700 chr5D 79.317 556 80 20 2132 2653 416589304 416589858 9.050000e-95 357.0
34 TraesCS1D01G398700 chr5D 83.951 162 26 0 1322 1483 490870384 490870545 3.540000e-34 156.0
35 TraesCS1D01G398700 chr5B 77.579 504 72 22 2132 2610 293243483 293243970 1.570000e-67 267.0
36 TraesCS1D01G398700 chr5B 74.406 758 119 32 1935 2659 419766692 419765977 3.400000e-64 255.0
37 TraesCS1D01G398700 chr5B 83.333 162 27 0 1322 1483 605336464 605336625 1.650000e-32 150.0
38 TraesCS1D01G398700 chr5B 82.781 151 26 0 1322 1472 9284876 9285026 4.620000e-28 135.0
39 TraesCS1D01G398700 chr6D 79.361 407 56 13 2278 2659 346270726 346270323 7.300000e-66 261.0
40 TraesCS1D01G398700 chr6D 83.032 277 39 3 2265 2533 382036142 382035866 7.350000e-61 244.0
41 TraesCS1D01G398700 chr6B 79.706 340 51 8 2220 2541 663560909 663560570 2.060000e-56 230.0
42 TraesCS1D01G398700 chr7A 78.613 346 68 4 1151 1490 700822839 700823184 9.580000e-55 224.0
43 TraesCS1D01G398700 chr7A 82.051 156 26 1 1937 2092 34997936 34997783 5.970000e-27 132.0
44 TraesCS1D01G398700 chr7A 84.483 116 17 1 1935 2049 490281785 490281900 2.160000e-21 113.0
45 TraesCS1D01G398700 chr4A 88.550 131 14 1 2132 2261 617366301 617366431 9.850000e-35 158.0
46 TraesCS1D01G398700 chr4A 80.882 136 25 1 1955 2090 638247442 638247576 3.620000e-19 106.0
47 TraesCS1D01G398700 chr6A 79.221 231 40 5 2144 2366 56935871 56936101 1.270000e-33 154.0
48 TraesCS1D01G398700 chr7B 83.648 159 26 0 1322 1480 714049998 714050156 1.650000e-32 150.0
49 TraesCS1D01G398700 chr7B 100.000 29 0 0 1571 1599 699954175 699954203 1.000000e-03 54.7
50 TraesCS1D01G398700 chr3A 86.260 131 17 1 2132 2261 263695442 263695312 9.920000e-30 141.0
51 TraesCS1D01G398700 chr3B 93.750 48 2 1 2087 2133 703006766 703006719 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G398700 chr1D 465582265 465584923 2658 False 4911.000000 4911 100.000000 1 2659 1 chr1D.!!$F3 2658
1 TraesCS1D01G398700 chr1A 557988617 557990850 2233 False 996.666667 1696 91.273667 386 2659 3 chr1A.!!$F2 2273
2 TraesCS1D01G398700 chr1A 557981289 557983577 2288 False 273.000000 350 84.979000 386 947 2 chr1A.!!$F1 561
3 TraesCS1D01G398700 chr1B 642495164 642496513 1349 False 1445.000000 1445 86.686000 386 1715 1 chr1B.!!$F1 1329
4 TraesCS1D01G398700 chr3D 98644381 98644902 521 False 309.000000 309 78.383000 2151 2653 1 chr3D.!!$F1 502
5 TraesCS1D01G398700 chr2A 496389346 496390070 724 True 322.000000 322 75.543000 1951 2653 1 chr2A.!!$R1 702
6 TraesCS1D01G398700 chr5D 416589304 416589858 554 False 357.000000 357 79.317000 2132 2653 1 chr5D.!!$F1 521
7 TraesCS1D01G398700 chr5B 419765977 419766692 715 True 255.000000 255 74.406000 1935 2659 1 chr5B.!!$R1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.109735 GTTAAGTTTGGCTGCGAGGC 60.11 55.0 0.0 3.31 41.77 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 3536 1.075542 CAAAGACGCCGAACAGCATA 58.924 50.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.468689 GCGTAGGGAGGTGGTGCC 62.469 72.222 0.00 0.00 36.73 5.01
18 19 4.143333 CGTAGGGAGGTGGTGCCG 62.143 72.222 0.00 0.00 43.04 5.69
19 20 3.001406 GTAGGGAGGTGGTGCCGT 61.001 66.667 0.00 0.00 43.04 5.68
20 21 2.682494 TAGGGAGGTGGTGCCGTC 60.682 66.667 0.00 0.00 43.04 4.79
23 24 4.736896 GGAGGTGGTGCCGTCGAC 62.737 72.222 5.18 5.18 43.70 4.20
35 36 1.640604 CGTCGACGGTAGCTAGACC 59.359 63.158 29.70 0.00 36.00 3.85
41 42 3.625099 GGTAGCTAGACCGGGCAA 58.375 61.111 11.69 0.00 0.00 4.52
42 43 1.442148 GGTAGCTAGACCGGGCAAG 59.558 63.158 11.69 1.80 0.00 4.01
43 44 1.442148 GTAGCTAGACCGGGCAAGG 59.558 63.158 11.69 0.00 37.30 3.61
45 46 0.616679 TAGCTAGACCGGGCAAGGTT 60.617 55.000 11.69 0.00 46.09 3.50
46 47 1.745489 GCTAGACCGGGCAAGGTTG 60.745 63.158 11.69 0.00 46.09 3.77
47 48 1.980052 CTAGACCGGGCAAGGTTGA 59.020 57.895 11.69 0.00 46.09 3.18
48 49 0.541863 CTAGACCGGGCAAGGTTGAT 59.458 55.000 11.69 0.00 46.09 2.57
49 50 0.251916 TAGACCGGGCAAGGTTGATG 59.748 55.000 11.69 0.00 46.09 3.07
50 51 2.676471 ACCGGGCAAGGTTGATGC 60.676 61.111 6.32 0.00 43.00 3.91
51 52 3.814268 CCGGGCAAGGTTGATGCG 61.814 66.667 0.00 0.00 44.75 4.73
52 53 3.055719 CGGGCAAGGTTGATGCGT 61.056 61.111 0.00 0.00 44.75 5.24
53 54 2.877691 GGGCAAGGTTGATGCGTC 59.122 61.111 0.00 0.00 44.75 5.19
54 55 1.971167 GGGCAAGGTTGATGCGTCA 60.971 57.895 3.97 3.97 44.75 4.35
55 56 1.503542 GGCAAGGTTGATGCGTCAG 59.496 57.895 8.93 0.00 44.75 3.51
56 57 1.237285 GGCAAGGTTGATGCGTCAGT 61.237 55.000 8.93 0.00 44.75 3.41
57 58 1.438651 GCAAGGTTGATGCGTCAGTA 58.561 50.000 8.93 0.00 35.39 2.74
58 59 1.128692 GCAAGGTTGATGCGTCAGTAC 59.871 52.381 8.93 5.47 35.39 2.73
59 60 2.412870 CAAGGTTGATGCGTCAGTACA 58.587 47.619 8.93 0.00 35.39 2.90
60 61 2.370281 AGGTTGATGCGTCAGTACAG 57.630 50.000 8.93 0.00 35.39 2.74
61 62 0.721718 GGTTGATGCGTCAGTACAGC 59.278 55.000 8.93 0.09 35.39 4.40
62 63 1.673033 GGTTGATGCGTCAGTACAGCT 60.673 52.381 8.93 0.00 35.39 4.24
63 64 1.656095 GTTGATGCGTCAGTACAGCTC 59.344 52.381 8.93 0.00 35.39 4.09
64 65 1.177401 TGATGCGTCAGTACAGCTCT 58.823 50.000 3.97 0.00 0.00 4.09
65 66 1.135286 TGATGCGTCAGTACAGCTCTG 60.135 52.381 3.97 0.00 0.00 3.35
66 67 1.133216 GATGCGTCAGTACAGCTCTGA 59.867 52.381 0.00 0.00 39.25 3.27
67 68 0.958822 TGCGTCAGTACAGCTCTGAA 59.041 50.000 5.25 0.00 42.42 3.02
68 69 1.068264 TGCGTCAGTACAGCTCTGAAG 60.068 52.381 11.02 11.02 42.42 3.02
69 70 1.200252 GCGTCAGTACAGCTCTGAAGA 59.800 52.381 17.19 0.00 42.42 2.87
70 71 2.159310 GCGTCAGTACAGCTCTGAAGAT 60.159 50.000 17.19 0.00 42.42 2.40
71 72 3.433709 CGTCAGTACAGCTCTGAAGATG 58.566 50.000 10.14 0.00 44.61 2.90
72 73 3.733380 CGTCAGTACAGCTCTGAAGATGG 60.733 52.174 10.14 0.00 43.33 3.51
73 74 3.445450 GTCAGTACAGCTCTGAAGATGGA 59.555 47.826 5.25 0.00 43.33 3.41
74 75 3.698539 TCAGTACAGCTCTGAAGATGGAG 59.301 47.826 3.60 0.00 43.33 3.86
75 76 3.446873 CAGTACAGCTCTGAAGATGGAGT 59.553 47.826 3.60 0.00 43.33 3.85
76 77 3.446873 AGTACAGCTCTGAAGATGGAGTG 59.553 47.826 3.60 0.00 43.33 3.51
77 78 2.255406 ACAGCTCTGAAGATGGAGTGT 58.745 47.619 3.60 0.00 43.33 3.55
78 79 2.636893 ACAGCTCTGAAGATGGAGTGTT 59.363 45.455 3.60 0.00 43.33 3.32
79 80 3.001414 CAGCTCTGAAGATGGAGTGTTG 58.999 50.000 0.00 0.00 35.22 3.33
80 81 2.027377 AGCTCTGAAGATGGAGTGTTGG 60.027 50.000 0.00 0.00 32.67 3.77
81 82 2.354259 CTCTGAAGATGGAGTGTTGGC 58.646 52.381 0.00 0.00 0.00 4.52
82 83 1.699083 TCTGAAGATGGAGTGTTGGCA 59.301 47.619 0.00 0.00 0.00 4.92
83 84 2.082231 CTGAAGATGGAGTGTTGGCAG 58.918 52.381 0.00 0.00 0.00 4.85
84 85 1.421268 TGAAGATGGAGTGTTGGCAGT 59.579 47.619 0.00 0.00 0.00 4.40
85 86 2.158623 TGAAGATGGAGTGTTGGCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
86 87 1.901591 AGATGGAGTGTTGGCAGTTG 58.098 50.000 0.00 0.00 0.00 3.16
87 88 0.883833 GATGGAGTGTTGGCAGTTGG 59.116 55.000 0.00 0.00 0.00 3.77
88 89 1.181098 ATGGAGTGTTGGCAGTTGGC 61.181 55.000 0.00 0.00 43.74 4.52
89 90 2.639286 GAGTGTTGGCAGTTGGCG 59.361 61.111 1.08 0.00 46.16 5.69
90 91 2.906897 AGTGTTGGCAGTTGGCGG 60.907 61.111 1.08 0.00 46.16 6.13
91 92 4.645921 GTGTTGGCAGTTGGCGGC 62.646 66.667 0.00 0.00 46.16 6.53
130 131 3.884774 GGACCAGTGTGTGCCCCA 61.885 66.667 0.00 0.00 0.00 4.96
131 132 2.436109 GACCAGTGTGTGCCCCAT 59.564 61.111 0.00 0.00 0.00 4.00
132 133 1.682849 GACCAGTGTGTGCCCCATA 59.317 57.895 0.00 0.00 0.00 2.74
133 134 0.676782 GACCAGTGTGTGCCCCATAC 60.677 60.000 0.00 0.00 35.55 2.39
134 135 1.378514 CCAGTGTGTGCCCCATACC 60.379 63.158 0.00 0.00 35.91 2.73
135 136 1.378514 CAGTGTGTGCCCCATACCC 60.379 63.158 0.00 0.00 35.91 3.69
136 137 2.437716 GTGTGTGCCCCATACCCG 60.438 66.667 0.00 0.00 0.00 5.28
137 138 3.722813 TGTGTGCCCCATACCCGG 61.723 66.667 0.00 0.00 0.00 5.73
142 143 4.123545 GCCCCATACCCGGCAAGT 62.124 66.667 0.00 0.00 45.01 3.16
143 144 2.124320 CCCCATACCCGGCAAGTG 60.124 66.667 0.00 0.00 0.00 3.16
144 145 2.124320 CCCATACCCGGCAAGTGG 60.124 66.667 0.00 0.69 0.00 4.00
145 146 2.828549 CCATACCCGGCAAGTGGC 60.829 66.667 0.00 0.00 43.74 5.01
146 147 2.272146 CATACCCGGCAAGTGGCT 59.728 61.111 0.00 0.00 44.01 4.75
147 148 1.378514 CATACCCGGCAAGTGGCTT 60.379 57.895 0.00 0.00 44.01 4.35
148 149 1.378514 ATACCCGGCAAGTGGCTTG 60.379 57.895 0.00 4.65 43.57 4.01
149 150 2.837031 ATACCCGGCAAGTGGCTTGG 62.837 60.000 10.38 6.09 41.31 3.61
150 151 4.974721 CCCGGCAAGTGGCTTGGT 62.975 66.667 10.38 0.00 41.31 3.67
151 152 2.912025 CCGGCAAGTGGCTTGGTT 60.912 61.111 10.38 0.00 41.31 3.67
152 153 2.336088 CGGCAAGTGGCTTGGTTG 59.664 61.111 10.38 0.00 41.31 3.77
153 154 2.736531 GGCAAGTGGCTTGGTTGG 59.263 61.111 10.38 0.00 41.31 3.77
154 155 2.736531 GCAAGTGGCTTGGTTGGG 59.263 61.111 10.38 0.00 41.31 4.12
155 156 2.871253 GCAAGTGGCTTGGTTGGGG 61.871 63.158 10.38 0.00 41.31 4.96
156 157 2.524148 AAGTGGCTTGGTTGGGGC 60.524 61.111 0.00 0.00 0.00 5.80
157 158 3.387609 AAGTGGCTTGGTTGGGGCA 62.388 57.895 0.00 0.00 35.68 5.36
158 159 2.604382 GTGGCTTGGTTGGGGCAT 60.604 61.111 0.00 0.00 40.00 4.40
159 160 2.283821 TGGCTTGGTTGGGGCATC 60.284 61.111 0.00 0.00 33.16 3.91
160 161 2.283821 GGCTTGGTTGGGGCATCA 60.284 61.111 0.00 0.00 0.00 3.07
161 162 2.353610 GGCTTGGTTGGGGCATCAG 61.354 63.158 0.00 0.00 0.00 2.90
162 163 2.353610 GCTTGGTTGGGGCATCAGG 61.354 63.158 0.00 0.00 0.00 3.86
163 164 1.077265 CTTGGTTGGGGCATCAGGT 59.923 57.895 0.00 0.00 0.00 4.00
164 165 0.967380 CTTGGTTGGGGCATCAGGTC 60.967 60.000 0.00 0.00 0.00 3.85
165 166 1.434513 TTGGTTGGGGCATCAGGTCT 61.435 55.000 0.00 0.00 0.00 3.85
166 167 1.384191 GGTTGGGGCATCAGGTCTT 59.616 57.895 0.00 0.00 0.00 3.01
167 168 0.623723 GGTTGGGGCATCAGGTCTTA 59.376 55.000 0.00 0.00 0.00 2.10
168 169 1.408822 GGTTGGGGCATCAGGTCTTAG 60.409 57.143 0.00 0.00 0.00 2.18
169 170 1.559682 GTTGGGGCATCAGGTCTTAGA 59.440 52.381 0.00 0.00 0.00 2.10
170 171 2.173569 GTTGGGGCATCAGGTCTTAGAT 59.826 50.000 0.00 0.00 0.00 1.98
171 172 1.770658 TGGGGCATCAGGTCTTAGATG 59.229 52.381 0.00 0.00 43.42 2.90
172 173 1.771255 GGGGCATCAGGTCTTAGATGT 59.229 52.381 0.00 0.00 42.72 3.06
173 174 2.173569 GGGGCATCAGGTCTTAGATGTT 59.826 50.000 0.00 0.00 42.72 2.71
174 175 3.391296 GGGGCATCAGGTCTTAGATGTTA 59.609 47.826 0.00 0.00 42.72 2.41
175 176 4.141482 GGGGCATCAGGTCTTAGATGTTAA 60.141 45.833 0.00 0.00 42.72 2.01
176 177 5.059833 GGGCATCAGGTCTTAGATGTTAAG 58.940 45.833 0.00 0.00 42.72 1.85
177 178 5.396884 GGGCATCAGGTCTTAGATGTTAAGT 60.397 44.000 0.00 0.00 42.72 2.24
178 179 6.116126 GGCATCAGGTCTTAGATGTTAAGTT 58.884 40.000 0.00 0.00 42.72 2.66
179 180 6.599638 GGCATCAGGTCTTAGATGTTAAGTTT 59.400 38.462 0.00 0.00 42.72 2.66
180 181 7.414540 GGCATCAGGTCTTAGATGTTAAGTTTG 60.415 40.741 0.00 0.00 42.72 2.93
181 182 7.414540 GCATCAGGTCTTAGATGTTAAGTTTGG 60.415 40.741 0.00 0.00 42.72 3.28
182 183 5.938125 TCAGGTCTTAGATGTTAAGTTTGGC 59.062 40.000 0.00 0.00 0.00 4.52
183 184 5.940470 CAGGTCTTAGATGTTAAGTTTGGCT 59.060 40.000 0.00 0.00 0.00 4.75
184 185 5.940470 AGGTCTTAGATGTTAAGTTTGGCTG 59.060 40.000 0.00 0.00 0.00 4.85
185 186 5.392057 GGTCTTAGATGTTAAGTTTGGCTGC 60.392 44.000 0.00 0.00 0.00 5.25
186 187 4.391830 TCTTAGATGTTAAGTTTGGCTGCG 59.608 41.667 0.00 0.00 0.00 5.18
187 188 2.778299 AGATGTTAAGTTTGGCTGCGA 58.222 42.857 0.00 0.00 0.00 5.10
188 189 2.744202 AGATGTTAAGTTTGGCTGCGAG 59.256 45.455 0.00 0.00 0.00 5.03
189 190 1.234821 TGTTAAGTTTGGCTGCGAGG 58.765 50.000 0.00 0.00 0.00 4.63
190 191 0.109735 GTTAAGTTTGGCTGCGAGGC 60.110 55.000 0.00 3.31 41.77 4.70
191 192 0.250727 TTAAGTTTGGCTGCGAGGCT 60.251 50.000 10.22 0.00 41.96 4.58
192 193 0.250727 TAAGTTTGGCTGCGAGGCTT 60.251 50.000 10.22 1.17 41.96 4.35
193 194 1.799258 AAGTTTGGCTGCGAGGCTTG 61.799 55.000 0.00 0.00 41.96 4.01
194 195 2.203337 TTTGGCTGCGAGGCTTGT 60.203 55.556 3.19 0.00 41.96 3.16
195 196 1.827789 TTTGGCTGCGAGGCTTGTT 60.828 52.632 3.19 0.00 41.96 2.83
196 197 1.391157 TTTGGCTGCGAGGCTTGTTT 61.391 50.000 3.19 0.00 41.96 2.83
197 198 2.074230 TTGGCTGCGAGGCTTGTTTG 62.074 55.000 3.19 0.00 41.96 2.93
198 199 2.256461 GCTGCGAGGCTTGTTTGG 59.744 61.111 3.19 0.00 0.00 3.28
199 200 2.555547 GCTGCGAGGCTTGTTTGGT 61.556 57.895 3.19 0.00 0.00 3.67
200 201 1.234615 GCTGCGAGGCTTGTTTGGTA 61.235 55.000 3.19 0.00 0.00 3.25
201 202 1.453155 CTGCGAGGCTTGTTTGGTAT 58.547 50.000 3.19 0.00 0.00 2.73
202 203 1.812571 CTGCGAGGCTTGTTTGGTATT 59.187 47.619 3.19 0.00 0.00 1.89
203 204 3.006940 CTGCGAGGCTTGTTTGGTATTA 58.993 45.455 3.19 0.00 0.00 0.98
204 205 3.006940 TGCGAGGCTTGTTTGGTATTAG 58.993 45.455 3.19 0.00 0.00 1.73
205 206 2.354821 GCGAGGCTTGTTTGGTATTAGG 59.645 50.000 3.19 0.00 0.00 2.69
206 207 2.354821 CGAGGCTTGTTTGGTATTAGGC 59.645 50.000 0.00 0.00 0.00 3.93
207 208 2.688446 GAGGCTTGTTTGGTATTAGGCC 59.312 50.000 0.00 0.00 38.71 5.19
208 209 1.754803 GGCTTGTTTGGTATTAGGCCC 59.245 52.381 0.00 0.00 33.07 5.80
209 210 2.452505 GCTTGTTTGGTATTAGGCCCA 58.547 47.619 0.00 0.00 0.00 5.36
210 211 2.427095 GCTTGTTTGGTATTAGGCCCAG 59.573 50.000 0.00 0.00 31.04 4.45
211 212 3.876156 GCTTGTTTGGTATTAGGCCCAGA 60.876 47.826 0.00 0.00 31.04 3.86
212 213 3.359695 TGTTTGGTATTAGGCCCAGAC 57.640 47.619 0.00 0.00 36.61 3.51
213 214 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
214 215 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
215 216 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
216 217 5.192923 TGTTTGGTATTAGGCCCAGACTATT 59.807 40.000 0.00 0.00 36.91 1.73
217 218 6.387513 TGTTTGGTATTAGGCCCAGACTATTA 59.612 38.462 0.00 0.00 36.91 0.98
218 219 6.681729 TTGGTATTAGGCCCAGACTATTAG 57.318 41.667 0.00 0.00 31.04 1.73
219 220 4.530946 TGGTATTAGGCCCAGACTATTAGC 59.469 45.833 0.00 0.00 31.88 3.09
220 221 4.530946 GGTATTAGGCCCAGACTATTAGCA 59.469 45.833 0.00 0.00 31.69 3.49
221 222 5.189934 GGTATTAGGCCCAGACTATTAGCAT 59.810 44.000 0.00 0.00 31.69 3.79
222 223 4.891992 TTAGGCCCAGACTATTAGCATC 57.108 45.455 0.00 0.00 0.00 3.91
223 224 1.981495 AGGCCCAGACTATTAGCATCC 59.019 52.381 0.00 0.00 0.00 3.51
224 225 1.003696 GGCCCAGACTATTAGCATCCC 59.996 57.143 0.00 0.00 0.00 3.85
225 226 1.981495 GCCCAGACTATTAGCATCCCT 59.019 52.381 0.00 0.00 0.00 4.20
226 227 3.173965 GCCCAGACTATTAGCATCCCTA 58.826 50.000 0.00 0.00 0.00 3.53
227 228 3.055747 GCCCAGACTATTAGCATCCCTAC 60.056 52.174 0.00 0.00 0.00 3.18
228 229 4.160329 CCCAGACTATTAGCATCCCTACA 58.840 47.826 0.00 0.00 0.00 2.74
229 230 4.780021 CCCAGACTATTAGCATCCCTACAT 59.220 45.833 0.00 0.00 0.00 2.29
230 231 5.105146 CCCAGACTATTAGCATCCCTACATC 60.105 48.000 0.00 0.00 0.00 3.06
231 232 5.481824 CCAGACTATTAGCATCCCTACATCA 59.518 44.000 0.00 0.00 0.00 3.07
232 233 6.014242 CCAGACTATTAGCATCCCTACATCAA 60.014 42.308 0.00 0.00 0.00 2.57
233 234 6.870965 CAGACTATTAGCATCCCTACATCAAC 59.129 42.308 0.00 0.00 0.00 3.18
234 235 6.784969 AGACTATTAGCATCCCTACATCAACT 59.215 38.462 0.00 0.00 0.00 3.16
235 236 6.763355 ACTATTAGCATCCCTACATCAACTG 58.237 40.000 0.00 0.00 0.00 3.16
236 237 4.422073 TTAGCATCCCTACATCAACTGG 57.578 45.455 0.00 0.00 0.00 4.00
237 238 2.481441 AGCATCCCTACATCAACTGGA 58.519 47.619 0.00 0.00 0.00 3.86
238 239 3.051581 AGCATCCCTACATCAACTGGAT 58.948 45.455 0.00 0.00 36.26 3.41
239 240 4.234550 AGCATCCCTACATCAACTGGATA 58.765 43.478 0.00 0.00 34.12 2.59
240 241 4.285517 AGCATCCCTACATCAACTGGATAG 59.714 45.833 0.00 0.00 34.12 2.08
241 242 4.564406 GCATCCCTACATCAACTGGATAGG 60.564 50.000 0.00 0.00 34.12 2.57
242 243 4.552883 TCCCTACATCAACTGGATAGGA 57.447 45.455 0.00 0.00 34.78 2.94
243 244 4.483950 TCCCTACATCAACTGGATAGGAG 58.516 47.826 0.00 0.00 34.78 3.69
244 245 4.078571 TCCCTACATCAACTGGATAGGAGT 60.079 45.833 0.00 0.00 34.78 3.85
245 246 5.135533 TCCCTACATCAACTGGATAGGAGTA 59.864 44.000 0.00 0.00 34.78 2.59
246 247 5.478679 CCCTACATCAACTGGATAGGAGTAG 59.521 48.000 0.00 0.00 34.78 2.57
247 248 4.946478 ACATCAACTGGATAGGAGTAGC 57.054 45.455 0.00 0.00 33.95 3.58
248 249 4.290093 ACATCAACTGGATAGGAGTAGCA 58.710 43.478 0.00 0.00 33.95 3.49
249 250 4.716784 ACATCAACTGGATAGGAGTAGCAA 59.283 41.667 0.00 0.00 33.95 3.91
250 251 5.367937 ACATCAACTGGATAGGAGTAGCAAT 59.632 40.000 0.00 0.00 33.95 3.56
251 252 6.554982 ACATCAACTGGATAGGAGTAGCAATA 59.445 38.462 0.00 0.00 33.95 1.90
252 253 6.656632 TCAACTGGATAGGAGTAGCAATAG 57.343 41.667 0.00 0.00 0.00 1.73
253 254 6.136857 TCAACTGGATAGGAGTAGCAATAGT 58.863 40.000 0.00 0.00 0.00 2.12
254 255 6.611642 TCAACTGGATAGGAGTAGCAATAGTT 59.388 38.462 0.00 0.00 0.00 2.24
255 256 6.412362 ACTGGATAGGAGTAGCAATAGTTG 57.588 41.667 0.00 0.00 0.00 3.16
256 257 5.900123 ACTGGATAGGAGTAGCAATAGTTGT 59.100 40.000 0.00 0.00 0.00 3.32
257 258 6.384305 ACTGGATAGGAGTAGCAATAGTTGTT 59.616 38.462 0.00 0.00 0.00 2.83
258 259 6.582636 TGGATAGGAGTAGCAATAGTTGTTG 58.417 40.000 0.00 0.00 0.00 3.33
259 260 6.156256 TGGATAGGAGTAGCAATAGTTGTTGT 59.844 38.462 0.00 0.00 0.00 3.32
260 261 6.702282 GGATAGGAGTAGCAATAGTTGTTGTC 59.298 42.308 0.00 0.00 0.00 3.18
261 262 5.746990 AGGAGTAGCAATAGTTGTTGTCT 57.253 39.130 0.00 0.00 0.00 3.41
262 263 6.852420 AGGAGTAGCAATAGTTGTTGTCTA 57.148 37.500 0.00 0.00 0.00 2.59
263 264 6.868622 AGGAGTAGCAATAGTTGTTGTCTAG 58.131 40.000 0.00 0.00 0.00 2.43
264 265 6.663953 AGGAGTAGCAATAGTTGTTGTCTAGA 59.336 38.462 0.00 0.00 0.00 2.43
265 266 6.752815 GGAGTAGCAATAGTTGTTGTCTAGAC 59.247 42.308 16.32 16.32 0.00 2.59
266 267 6.323266 AGTAGCAATAGTTGTTGTCTAGACG 58.677 40.000 17.85 0.93 0.00 4.18
267 268 4.495422 AGCAATAGTTGTTGTCTAGACGG 58.505 43.478 17.85 0.00 0.00 4.79
268 269 4.021368 AGCAATAGTTGTTGTCTAGACGGT 60.021 41.667 17.85 2.54 0.00 4.83
269 270 4.091509 GCAATAGTTGTTGTCTAGACGGTG 59.908 45.833 17.85 6.34 0.00 4.94
270 271 2.814280 AGTTGTTGTCTAGACGGTGG 57.186 50.000 17.85 0.00 0.00 4.61
271 272 1.145803 GTTGTTGTCTAGACGGTGGC 58.854 55.000 17.85 6.69 0.00 5.01
272 273 1.045407 TTGTTGTCTAGACGGTGGCT 58.955 50.000 17.85 0.00 0.00 4.75
273 274 1.045407 TGTTGTCTAGACGGTGGCTT 58.955 50.000 17.85 0.00 0.00 4.35
274 275 1.000506 TGTTGTCTAGACGGTGGCTTC 59.999 52.381 17.85 3.21 0.00 3.86
275 276 1.000506 GTTGTCTAGACGGTGGCTTCA 59.999 52.381 17.85 0.00 0.00 3.02
276 277 0.888619 TGTCTAGACGGTGGCTTCAG 59.111 55.000 17.85 0.00 0.00 3.02
277 278 1.174783 GTCTAGACGGTGGCTTCAGA 58.825 55.000 7.22 0.00 0.00 3.27
278 279 1.135344 GTCTAGACGGTGGCTTCAGAC 60.135 57.143 7.22 0.00 0.00 3.51
279 280 1.178276 CTAGACGGTGGCTTCAGACT 58.822 55.000 0.00 0.00 0.00 3.24
280 281 1.546476 CTAGACGGTGGCTTCAGACTT 59.454 52.381 0.00 0.00 0.00 3.01
281 282 1.629043 AGACGGTGGCTTCAGACTTA 58.371 50.000 0.00 0.00 0.00 2.24
282 283 1.272769 AGACGGTGGCTTCAGACTTAC 59.727 52.381 0.00 0.00 0.00 2.34
283 284 1.272769 GACGGTGGCTTCAGACTTACT 59.727 52.381 0.00 0.00 0.00 2.24
284 285 1.000955 ACGGTGGCTTCAGACTTACTG 59.999 52.381 0.00 0.00 46.97 2.74
285 286 1.000955 CGGTGGCTTCAGACTTACTGT 59.999 52.381 0.00 0.00 45.86 3.55
286 287 2.548067 CGGTGGCTTCAGACTTACTGTT 60.548 50.000 0.00 0.00 45.86 3.16
287 288 3.305813 CGGTGGCTTCAGACTTACTGTTA 60.306 47.826 0.00 0.00 45.86 2.41
288 289 4.620803 CGGTGGCTTCAGACTTACTGTTAT 60.621 45.833 0.00 0.00 45.86 1.89
289 290 5.393787 CGGTGGCTTCAGACTTACTGTTATA 60.394 44.000 0.00 0.00 45.86 0.98
290 291 6.583562 GGTGGCTTCAGACTTACTGTTATAT 58.416 40.000 0.00 0.00 45.86 0.86
291 292 6.702282 GGTGGCTTCAGACTTACTGTTATATC 59.298 42.308 0.00 0.00 45.86 1.63
292 293 7.418025 GGTGGCTTCAGACTTACTGTTATATCT 60.418 40.741 0.00 0.00 45.86 1.98
293 294 7.982354 GTGGCTTCAGACTTACTGTTATATCTT 59.018 37.037 0.00 0.00 45.86 2.40
294 295 8.540388 TGGCTTCAGACTTACTGTTATATCTTT 58.460 33.333 0.00 0.00 45.86 2.52
295 296 9.384764 GGCTTCAGACTTACTGTTATATCTTTT 57.615 33.333 0.00 0.00 45.86 2.27
331 332 8.925161 TTGTGAATAATTAATAAAGTGGCTGC 57.075 30.769 0.00 0.00 0.00 5.25
332 333 8.060931 TGTGAATAATTAATAAAGTGGCTGCA 57.939 30.769 0.50 0.00 0.00 4.41
333 334 8.694540 TGTGAATAATTAATAAAGTGGCTGCAT 58.305 29.630 0.50 0.00 0.00 3.96
334 335 8.971321 GTGAATAATTAATAAAGTGGCTGCATG 58.029 33.333 0.50 0.00 0.00 4.06
335 336 7.652909 TGAATAATTAATAAAGTGGCTGCATGC 59.347 33.333 11.82 11.82 41.94 4.06
336 337 5.341872 AATTAATAAAGTGGCTGCATGCA 57.658 34.783 21.29 21.29 45.15 3.96
337 338 5.540400 ATTAATAAAGTGGCTGCATGCAT 57.460 34.783 22.97 6.91 45.15 3.96
338 339 3.447918 AATAAAGTGGCTGCATGCATC 57.552 42.857 22.97 17.75 45.15 3.91
339 340 0.734309 TAAAGTGGCTGCATGCATCG 59.266 50.000 22.97 12.00 45.15 3.84
340 341 2.552585 AAAGTGGCTGCATGCATCGC 62.553 55.000 22.97 21.54 45.15 4.58
341 342 4.564116 GTGGCTGCATGCATCGCC 62.564 66.667 33.23 33.23 45.15 5.54
344 345 4.266070 GCTGCATGCATCGCCCAG 62.266 66.667 22.97 8.76 42.31 4.45
345 346 2.515290 CTGCATGCATCGCCCAGA 60.515 61.111 22.97 0.00 0.00 3.86
346 347 1.897137 CTGCATGCATCGCCCAGAT 60.897 57.895 22.97 0.00 41.01 2.90
347 348 0.604511 CTGCATGCATCGCCCAGATA 60.605 55.000 22.97 0.00 37.52 1.98
348 349 0.604511 TGCATGCATCGCCCAGATAG 60.605 55.000 18.46 0.00 37.52 2.08
349 350 0.604780 GCATGCATCGCCCAGATAGT 60.605 55.000 14.21 0.00 37.52 2.12
350 351 1.338105 GCATGCATCGCCCAGATAGTA 60.338 52.381 14.21 0.00 37.52 1.82
351 352 2.341257 CATGCATCGCCCAGATAGTAC 58.659 52.381 0.00 0.00 37.52 2.73
352 353 1.408969 TGCATCGCCCAGATAGTACA 58.591 50.000 0.00 0.00 37.52 2.90
353 354 1.341209 TGCATCGCCCAGATAGTACAG 59.659 52.381 0.00 0.00 37.52 2.74
354 355 1.613925 GCATCGCCCAGATAGTACAGA 59.386 52.381 0.00 0.00 37.52 3.41
355 356 2.352225 GCATCGCCCAGATAGTACAGAG 60.352 54.545 0.00 0.00 37.52 3.35
356 357 1.982660 TCGCCCAGATAGTACAGAGG 58.017 55.000 0.00 0.00 0.00 3.69
357 358 0.315568 CGCCCAGATAGTACAGAGGC 59.684 60.000 0.00 0.00 35.55 4.70
358 359 0.682292 GCCCAGATAGTACAGAGGCC 59.318 60.000 0.00 0.00 32.68 5.19
359 360 0.962489 CCCAGATAGTACAGAGGCCG 59.038 60.000 0.00 0.00 0.00 6.13
360 361 0.962489 CCAGATAGTACAGAGGCCGG 59.038 60.000 0.00 0.00 0.00 6.13
361 362 0.962489 CAGATAGTACAGAGGCCGGG 59.038 60.000 2.18 0.00 0.00 5.73
362 363 0.178958 AGATAGTACAGAGGCCGGGG 60.179 60.000 2.18 0.00 0.00 5.73
363 364 1.152312 ATAGTACAGAGGCCGGGGG 60.152 63.158 2.18 0.00 0.00 5.40
364 365 1.957822 ATAGTACAGAGGCCGGGGGT 61.958 60.000 2.18 0.00 0.00 4.95
365 366 2.578586 TAGTACAGAGGCCGGGGGTC 62.579 65.000 2.18 0.00 0.00 4.46
366 367 4.791069 TACAGAGGCCGGGGGTCC 62.791 72.222 2.18 0.00 0.00 4.46
371 372 4.677151 AGGCCGGGGGTCCTTCTT 62.677 66.667 2.18 0.00 0.00 2.52
372 373 4.111053 GGCCGGGGGTCCTTCTTC 62.111 72.222 2.18 0.00 0.00 2.87
373 374 3.009714 GCCGGGGGTCCTTCTTCT 61.010 66.667 2.18 0.00 0.00 2.85
374 375 2.603652 GCCGGGGGTCCTTCTTCTT 61.604 63.158 2.18 0.00 0.00 2.52
375 376 2.075837 CCGGGGGTCCTTCTTCTTT 58.924 57.895 0.00 0.00 0.00 2.52
376 377 1.282382 CCGGGGGTCCTTCTTCTTTA 58.718 55.000 0.00 0.00 0.00 1.85
377 378 1.631898 CCGGGGGTCCTTCTTCTTTAA 59.368 52.381 0.00 0.00 0.00 1.52
378 379 2.040679 CCGGGGGTCCTTCTTCTTTAAA 59.959 50.000 0.00 0.00 0.00 1.52
379 380 3.499021 CCGGGGGTCCTTCTTCTTTAAAA 60.499 47.826 0.00 0.00 0.00 1.52
380 381 4.146564 CGGGGGTCCTTCTTCTTTAAAAA 58.853 43.478 0.00 0.00 0.00 1.94
405 406 7.650834 AAAAATATTGGTGTGGTTTGAATCG 57.349 32.000 0.00 0.00 0.00 3.34
414 419 3.440522 TGTGGTTTGAATCGTGTTGAACA 59.559 39.130 0.00 0.00 0.00 3.18
584 596 0.166597 CACGCCACGACGTAGACTTA 59.833 55.000 0.00 0.00 46.34 2.24
626 638 2.041922 CATCTCCGGTCTCCCCCA 60.042 66.667 0.00 0.00 0.00 4.96
676 2417 1.374758 AGAAAAGTCGCGAGCCAGG 60.375 57.895 10.24 0.00 0.00 4.45
697 2439 2.035576 GCCAACACCCGTAGAGTATAGG 59.964 54.545 0.00 0.00 0.00 2.57
702 2455 1.771255 ACCCGTAGAGTATAGGGACGT 59.229 52.381 6.36 0.00 46.64 4.34
730 2483 4.035208 CGTAGTTTCCTGGAAATGTATGCC 59.965 45.833 23.60 9.88 33.97 4.40
734 2487 2.948115 TCCTGGAAATGTATGCCATGG 58.052 47.619 7.63 7.63 32.82 3.66
735 2488 1.342174 CCTGGAAATGTATGCCATGGC 59.658 52.381 30.54 30.54 42.35 4.40
789 2555 3.419759 CCAAGGGAAACGACGCGG 61.420 66.667 12.47 0.00 0.00 6.46
795 2561 2.101835 GGAAACGACGCGGGCATTA 61.102 57.895 12.47 0.00 0.00 1.90
796 2562 1.433837 GGAAACGACGCGGGCATTAT 61.434 55.000 12.47 0.00 0.00 1.28
798 2564 1.711060 AAACGACGCGGGCATTATGG 61.711 55.000 12.47 0.00 0.00 2.74
799 2565 4.012895 CGACGCGGGCATTATGGC 62.013 66.667 12.47 10.47 42.88 4.40
830 2596 0.867746 CATGGTTATCATCGCGTGGG 59.132 55.000 5.77 0.00 32.92 4.61
997 2772 3.414700 CGCGTGCACAAGAGGTCC 61.415 66.667 18.64 0.00 0.00 4.46
1689 3495 3.247648 TGCTTTTGTTCTCTAAGACACGC 59.752 43.478 0.00 0.00 0.00 5.34
1718 3524 3.068448 TGTGCGTCCTTGTGTAGTAGAAA 59.932 43.478 0.00 0.00 0.00 2.52
1762 3568 4.025401 CTTTGCGGTGCCGGTGTC 62.025 66.667 12.82 0.00 40.19 3.67
1766 3572 4.065281 GCGGTGCCGGTGTCTACT 62.065 66.667 12.82 0.00 40.19 2.57
1784 3590 5.758784 GTCTACTTACTTTGCAGGTTTCTGT 59.241 40.000 0.00 0.00 42.78 3.41
1785 3591 6.927381 GTCTACTTACTTTGCAGGTTTCTGTA 59.073 38.462 0.00 0.00 42.78 2.74
1879 3687 7.606349 TCTAGAATATGCATGAGTATGTCACC 58.394 38.462 10.16 0.00 38.28 4.02
1880 3688 5.555017 AGAATATGCATGAGTATGTCACCC 58.445 41.667 10.16 0.00 38.28 4.61
1881 3689 2.245159 ATGCATGAGTATGTCACCCG 57.755 50.000 0.00 0.00 38.28 5.28
1882 3690 0.461870 TGCATGAGTATGTCACCCGC 60.462 55.000 0.00 0.00 38.28 6.13
1883 3691 0.461870 GCATGAGTATGTCACCCGCA 60.462 55.000 0.00 0.00 38.28 5.69
1884 3692 2.011548 GCATGAGTATGTCACCCGCAA 61.012 52.381 0.00 0.00 38.28 4.85
1885 3693 2.355197 CATGAGTATGTCACCCGCAAA 58.645 47.619 0.00 0.00 38.28 3.68
1886 3694 2.552599 TGAGTATGTCACCCGCAAAA 57.447 45.000 0.00 0.00 0.00 2.44
1887 3695 2.852449 TGAGTATGTCACCCGCAAAAA 58.148 42.857 0.00 0.00 0.00 1.94
1939 3747 8.871570 ATATTAAGAGGAGAAAAGGGTAAGGA 57.128 34.615 0.00 0.00 0.00 3.36
1946 3754 3.583526 GAGAAAAGGGTAAGGACACCTCT 59.416 47.826 0.00 0.00 38.73 3.69
2060 3899 3.127895 GCCGTATACATCTTGCCAACAAA 59.872 43.478 3.32 0.00 34.74 2.83
2083 3922 5.789710 TCGAATTAACTGGACGAAATTCC 57.210 39.130 0.00 0.00 35.76 3.01
2158 3998 7.658525 ACATGGCCAGATTTCATATAAACAA 57.341 32.000 13.05 0.00 0.00 2.83
2162 4002 6.038161 TGGCCAGATTTCATATAAACAAGACG 59.962 38.462 0.00 0.00 0.00 4.18
2165 4005 7.041098 GCCAGATTTCATATAAACAAGACGGAT 60.041 37.037 0.00 0.00 0.00 4.18
2178 4045 7.772332 AACAAGACGGATTTCATATAGACAC 57.228 36.000 0.00 0.00 0.00 3.67
2427 4311 0.601576 CCGACGATGTTCAACCCACA 60.602 55.000 0.00 0.00 0.00 4.17
2602 4502 2.430921 CTCGTCGAACAGCGCCTT 60.431 61.111 2.29 0.00 40.61 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.468689 GGCACCACCTCCCTACGC 62.469 72.222 0.00 0.00 34.51 4.42
1 2 4.143333 CGGCACCACCTCCCTACG 62.143 72.222 0.00 0.00 35.61 3.51
2 3 3.001406 ACGGCACCACCTCCCTAC 61.001 66.667 0.00 0.00 35.61 3.18
6 7 4.736896 GTCGACGGCACCACCTCC 62.737 72.222 0.00 0.00 35.61 4.30
17 18 1.640604 GGTCTAGCTACCGTCGACG 59.359 63.158 30.33 30.33 39.44 5.12
24 25 1.442148 CTTGCCCGGTCTAGCTACC 59.558 63.158 0.00 0.00 36.08 3.18
25 26 1.328430 ACCTTGCCCGGTCTAGCTAC 61.328 60.000 0.00 0.00 29.14 3.58
26 27 0.616679 AACCTTGCCCGGTCTAGCTA 60.617 55.000 0.00 0.00 35.89 3.32
27 28 1.918800 AACCTTGCCCGGTCTAGCT 60.919 57.895 0.00 0.00 35.89 3.32
28 29 1.745489 CAACCTTGCCCGGTCTAGC 60.745 63.158 0.00 0.00 35.89 3.42
29 30 0.541863 ATCAACCTTGCCCGGTCTAG 59.458 55.000 0.00 0.00 35.89 2.43
30 31 0.251916 CATCAACCTTGCCCGGTCTA 59.748 55.000 0.00 0.00 35.89 2.59
31 32 1.002134 CATCAACCTTGCCCGGTCT 60.002 57.895 0.00 0.00 35.89 3.85
32 33 2.700773 GCATCAACCTTGCCCGGTC 61.701 63.158 0.00 0.00 35.89 4.79
33 34 2.676471 GCATCAACCTTGCCCGGT 60.676 61.111 0.00 0.00 39.48 5.28
34 35 3.814268 CGCATCAACCTTGCCCGG 61.814 66.667 0.00 0.00 36.75 5.73
35 36 3.039202 GACGCATCAACCTTGCCCG 62.039 63.158 0.00 0.00 36.75 6.13
36 37 1.926511 CTGACGCATCAACCTTGCCC 61.927 60.000 0.00 0.00 36.75 5.36
37 38 1.237285 ACTGACGCATCAACCTTGCC 61.237 55.000 0.00 0.00 36.75 4.52
38 39 1.128692 GTACTGACGCATCAACCTTGC 59.871 52.381 0.00 0.00 33.30 4.01
39 40 2.412870 TGTACTGACGCATCAACCTTG 58.587 47.619 0.00 0.00 33.30 3.61
40 41 2.688507 CTGTACTGACGCATCAACCTT 58.311 47.619 0.00 0.00 33.30 3.50
41 42 1.673033 GCTGTACTGACGCATCAACCT 60.673 52.381 3.61 0.00 33.30 3.50
42 43 0.721718 GCTGTACTGACGCATCAACC 59.278 55.000 3.61 0.00 33.30 3.77
43 44 1.656095 GAGCTGTACTGACGCATCAAC 59.344 52.381 3.61 0.00 33.30 3.18
44 45 1.546029 AGAGCTGTACTGACGCATCAA 59.454 47.619 3.61 0.00 33.30 2.57
45 46 1.135286 CAGAGCTGTACTGACGCATCA 60.135 52.381 3.61 0.00 37.54 3.07
46 47 1.133216 TCAGAGCTGTACTGACGCATC 59.867 52.381 3.61 0.00 39.10 3.91
47 48 1.177401 TCAGAGCTGTACTGACGCAT 58.823 50.000 3.61 0.00 39.10 4.73
48 49 0.958822 TTCAGAGCTGTACTGACGCA 59.041 50.000 3.21 0.00 42.84 5.24
49 50 1.200252 TCTTCAGAGCTGTACTGACGC 59.800 52.381 3.21 0.00 42.84 5.19
50 51 3.433709 CATCTTCAGAGCTGTACTGACG 58.566 50.000 3.21 2.59 42.84 4.35
51 52 3.445450 TCCATCTTCAGAGCTGTACTGAC 59.555 47.826 3.21 0.00 42.84 3.51
52 53 3.698539 CTCCATCTTCAGAGCTGTACTGA 59.301 47.826 3.61 0.00 41.70 3.41
53 54 3.446873 ACTCCATCTTCAGAGCTGTACTG 59.553 47.826 0.00 0.00 36.80 2.74
54 55 3.446873 CACTCCATCTTCAGAGCTGTACT 59.553 47.826 0.00 0.00 33.18 2.73
55 56 3.194542 ACACTCCATCTTCAGAGCTGTAC 59.805 47.826 0.00 0.00 33.18 2.90
56 57 3.435275 ACACTCCATCTTCAGAGCTGTA 58.565 45.455 0.00 0.00 33.18 2.74
57 58 2.255406 ACACTCCATCTTCAGAGCTGT 58.745 47.619 0.00 0.00 33.18 4.40
58 59 3.001414 CAACACTCCATCTTCAGAGCTG 58.999 50.000 0.00 0.00 33.18 4.24
59 60 2.027377 CCAACACTCCATCTTCAGAGCT 60.027 50.000 0.00 0.00 33.18 4.09
60 61 2.354259 CCAACACTCCATCTTCAGAGC 58.646 52.381 0.00 0.00 33.18 4.09
61 62 2.289882 TGCCAACACTCCATCTTCAGAG 60.290 50.000 0.00 0.00 36.16 3.35
62 63 1.699083 TGCCAACACTCCATCTTCAGA 59.301 47.619 0.00 0.00 0.00 3.27
63 64 2.082231 CTGCCAACACTCCATCTTCAG 58.918 52.381 0.00 0.00 0.00 3.02
64 65 1.421268 ACTGCCAACACTCCATCTTCA 59.579 47.619 0.00 0.00 0.00 3.02
65 66 2.191128 ACTGCCAACACTCCATCTTC 57.809 50.000 0.00 0.00 0.00 2.87
66 67 2.233271 CAACTGCCAACACTCCATCTT 58.767 47.619 0.00 0.00 0.00 2.40
67 68 1.546323 CCAACTGCCAACACTCCATCT 60.546 52.381 0.00 0.00 0.00 2.90
68 69 0.883833 CCAACTGCCAACACTCCATC 59.116 55.000 0.00 0.00 0.00 3.51
69 70 1.181098 GCCAACTGCCAACACTCCAT 61.181 55.000 0.00 0.00 0.00 3.41
70 71 1.827789 GCCAACTGCCAACACTCCA 60.828 57.895 0.00 0.00 0.00 3.86
71 72 2.908073 CGCCAACTGCCAACACTCC 61.908 63.158 0.00 0.00 36.24 3.85
72 73 2.639286 CGCCAACTGCCAACACTC 59.361 61.111 0.00 0.00 36.24 3.51
73 74 2.906897 CCGCCAACTGCCAACACT 60.907 61.111 0.00 0.00 36.24 3.55
74 75 4.645921 GCCGCCAACTGCCAACAC 62.646 66.667 0.00 0.00 36.24 3.32
113 114 1.847798 TATGGGGCACACACTGGTCC 61.848 60.000 0.00 0.00 0.00 4.46
114 115 0.676782 GTATGGGGCACACACTGGTC 60.677 60.000 0.00 0.00 0.00 4.02
115 116 1.378762 GTATGGGGCACACACTGGT 59.621 57.895 0.00 0.00 0.00 4.00
116 117 1.378514 GGTATGGGGCACACACTGG 60.379 63.158 0.00 0.00 0.00 4.00
117 118 1.378514 GGGTATGGGGCACACACTG 60.379 63.158 0.00 0.00 0.00 3.66
118 119 2.966732 CGGGTATGGGGCACACACT 61.967 63.158 0.00 0.00 0.00 3.55
119 120 2.437716 CGGGTATGGGGCACACAC 60.438 66.667 0.00 0.00 0.00 3.82
120 121 3.722813 CCGGGTATGGGGCACACA 61.723 66.667 0.00 0.00 0.00 3.72
126 127 2.124320 CACTTGCCGGGTATGGGG 60.124 66.667 2.18 0.00 0.00 4.96
127 128 2.124320 CCACTTGCCGGGTATGGG 60.124 66.667 2.18 0.00 0.00 4.00
128 129 2.828549 GCCACTTGCCGGGTATGG 60.829 66.667 2.18 0.79 0.00 2.74
129 130 1.378514 AAGCCACTTGCCGGGTATG 60.379 57.895 2.18 0.00 42.71 2.39
130 131 1.378514 CAAGCCACTTGCCGGGTAT 60.379 57.895 2.18 0.00 42.71 2.73
131 132 2.033448 CAAGCCACTTGCCGGGTA 59.967 61.111 2.18 0.00 42.71 3.69
132 133 4.974721 CCAAGCCACTTGCCGGGT 62.975 66.667 2.18 0.00 42.71 5.28
133 134 4.974721 ACCAAGCCACTTGCCGGG 62.975 66.667 2.18 0.00 42.71 5.73
134 135 2.912025 AACCAAGCCACTTGCCGG 60.912 61.111 0.00 0.00 42.71 6.13
135 136 2.336088 CAACCAAGCCACTTGCCG 59.664 61.111 1.73 0.00 42.71 5.69
136 137 2.736531 CCAACCAAGCCACTTGCC 59.263 61.111 1.73 0.00 42.71 4.52
137 138 2.736531 CCCAACCAAGCCACTTGC 59.263 61.111 1.73 0.00 39.85 4.01
138 139 2.871253 GCCCCAACCAAGCCACTTG 61.871 63.158 0.24 0.24 40.75 3.16
139 140 2.524148 GCCCCAACCAAGCCACTT 60.524 61.111 0.00 0.00 0.00 3.16
140 141 3.164610 ATGCCCCAACCAAGCCACT 62.165 57.895 0.00 0.00 0.00 4.00
141 142 2.604382 ATGCCCCAACCAAGCCAC 60.604 61.111 0.00 0.00 0.00 5.01
142 143 2.283821 GATGCCCCAACCAAGCCA 60.284 61.111 0.00 0.00 0.00 4.75
143 144 2.283821 TGATGCCCCAACCAAGCC 60.284 61.111 0.00 0.00 0.00 4.35
144 145 2.353610 CCTGATGCCCCAACCAAGC 61.354 63.158 0.00 0.00 0.00 4.01
145 146 0.967380 GACCTGATGCCCCAACCAAG 60.967 60.000 0.00 0.00 0.00 3.61
146 147 1.076549 GACCTGATGCCCCAACCAA 59.923 57.895 0.00 0.00 0.00 3.67
147 148 1.434513 AAGACCTGATGCCCCAACCA 61.435 55.000 0.00 0.00 0.00 3.67
148 149 0.623723 TAAGACCTGATGCCCCAACC 59.376 55.000 0.00 0.00 0.00 3.77
149 150 1.559682 TCTAAGACCTGATGCCCCAAC 59.440 52.381 0.00 0.00 0.00 3.77
150 151 1.965414 TCTAAGACCTGATGCCCCAA 58.035 50.000 0.00 0.00 0.00 4.12
151 152 1.770658 CATCTAAGACCTGATGCCCCA 59.229 52.381 0.00 0.00 34.52 4.96
152 153 1.771255 ACATCTAAGACCTGATGCCCC 59.229 52.381 0.00 0.00 42.57 5.80
153 154 3.567478 AACATCTAAGACCTGATGCCC 57.433 47.619 0.00 0.00 42.57 5.36
154 155 5.675538 ACTTAACATCTAAGACCTGATGCC 58.324 41.667 0.00 0.00 42.57 4.40
155 156 7.414540 CCAAACTTAACATCTAAGACCTGATGC 60.415 40.741 0.00 0.00 42.57 3.91
156 157 7.414540 GCCAAACTTAACATCTAAGACCTGATG 60.415 40.741 0.00 0.00 43.90 3.07
157 158 6.599638 GCCAAACTTAACATCTAAGACCTGAT 59.400 38.462 0.00 0.00 0.00 2.90
158 159 5.938125 GCCAAACTTAACATCTAAGACCTGA 59.062 40.000 0.00 0.00 0.00 3.86
159 160 5.940470 AGCCAAACTTAACATCTAAGACCTG 59.060 40.000 0.00 0.00 0.00 4.00
160 161 5.940470 CAGCCAAACTTAACATCTAAGACCT 59.060 40.000 0.00 0.00 0.00 3.85
161 162 5.392057 GCAGCCAAACTTAACATCTAAGACC 60.392 44.000 0.00 0.00 0.00 3.85
162 163 5.631992 GCAGCCAAACTTAACATCTAAGAC 58.368 41.667 0.00 0.00 0.00 3.01
163 164 4.391830 CGCAGCCAAACTTAACATCTAAGA 59.608 41.667 0.00 0.00 0.00 2.10
164 165 4.391830 TCGCAGCCAAACTTAACATCTAAG 59.608 41.667 0.00 0.00 0.00 2.18
165 166 4.320023 TCGCAGCCAAACTTAACATCTAA 58.680 39.130 0.00 0.00 0.00 2.10
166 167 3.932710 CTCGCAGCCAAACTTAACATCTA 59.067 43.478 0.00 0.00 0.00 1.98
167 168 2.744202 CTCGCAGCCAAACTTAACATCT 59.256 45.455 0.00 0.00 0.00 2.90
168 169 2.159517 CCTCGCAGCCAAACTTAACATC 60.160 50.000 0.00 0.00 0.00 3.06
169 170 1.812571 CCTCGCAGCCAAACTTAACAT 59.187 47.619 0.00 0.00 0.00 2.71
170 171 1.234821 CCTCGCAGCCAAACTTAACA 58.765 50.000 0.00 0.00 0.00 2.41
171 172 0.109735 GCCTCGCAGCCAAACTTAAC 60.110 55.000 0.00 0.00 0.00 2.01
172 173 0.250727 AGCCTCGCAGCCAAACTTAA 60.251 50.000 0.00 0.00 0.00 1.85
173 174 0.250727 AAGCCTCGCAGCCAAACTTA 60.251 50.000 0.00 0.00 0.00 2.24
174 175 1.529244 AAGCCTCGCAGCCAAACTT 60.529 52.632 0.00 0.00 0.00 2.66
175 176 2.113986 AAGCCTCGCAGCCAAACT 59.886 55.556 0.00 0.00 0.00 2.66
176 177 2.075426 AACAAGCCTCGCAGCCAAAC 62.075 55.000 0.00 0.00 0.00 2.93
177 178 1.391157 AAACAAGCCTCGCAGCCAAA 61.391 50.000 0.00 0.00 0.00 3.28
178 179 1.827789 AAACAAGCCTCGCAGCCAA 60.828 52.632 0.00 0.00 0.00 4.52
179 180 2.203337 AAACAAGCCTCGCAGCCA 60.203 55.556 0.00 0.00 0.00 4.75
180 181 2.256461 CAAACAAGCCTCGCAGCC 59.744 61.111 0.00 0.00 0.00 4.85
181 182 1.234615 TACCAAACAAGCCTCGCAGC 61.235 55.000 0.00 0.00 0.00 5.25
182 183 1.453155 ATACCAAACAAGCCTCGCAG 58.547 50.000 0.00 0.00 0.00 5.18
183 184 1.904287 AATACCAAACAAGCCTCGCA 58.096 45.000 0.00 0.00 0.00 5.10
184 185 2.354821 CCTAATACCAAACAAGCCTCGC 59.645 50.000 0.00 0.00 0.00 5.03
185 186 2.354821 GCCTAATACCAAACAAGCCTCG 59.645 50.000 0.00 0.00 0.00 4.63
186 187 2.688446 GGCCTAATACCAAACAAGCCTC 59.312 50.000 0.00 0.00 36.22 4.70
187 188 2.623239 GGGCCTAATACCAAACAAGCCT 60.623 50.000 0.84 0.00 39.17 4.58
188 189 1.754803 GGGCCTAATACCAAACAAGCC 59.245 52.381 0.84 0.00 38.45 4.35
189 190 2.427095 CTGGGCCTAATACCAAACAAGC 59.573 50.000 4.53 0.00 36.09 4.01
190 191 3.694566 GTCTGGGCCTAATACCAAACAAG 59.305 47.826 4.53 0.00 36.09 3.16
191 192 3.332485 AGTCTGGGCCTAATACCAAACAA 59.668 43.478 4.53 0.00 36.09 2.83
192 193 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
193 194 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
194 195 5.987019 AATAGTCTGGGCCTAATACCAAA 57.013 39.130 4.53 0.00 36.09 3.28
195 196 5.012768 GCTAATAGTCTGGGCCTAATACCAA 59.987 44.000 4.53 0.00 36.09 3.67
196 197 4.530946 GCTAATAGTCTGGGCCTAATACCA 59.469 45.833 4.53 0.00 35.05 3.25
197 198 4.530946 TGCTAATAGTCTGGGCCTAATACC 59.469 45.833 4.53 0.00 0.00 2.73
198 199 5.740290 TGCTAATAGTCTGGGCCTAATAC 57.260 43.478 4.53 0.00 0.00 1.89
199 200 5.425539 GGATGCTAATAGTCTGGGCCTAATA 59.574 44.000 4.53 0.00 0.00 0.98
200 201 4.226168 GGATGCTAATAGTCTGGGCCTAAT 59.774 45.833 4.53 0.00 0.00 1.73
201 202 3.583086 GGATGCTAATAGTCTGGGCCTAA 59.417 47.826 4.53 0.00 0.00 2.69
202 203 3.173965 GGATGCTAATAGTCTGGGCCTA 58.826 50.000 4.53 0.00 0.00 3.93
203 204 1.981495 GGATGCTAATAGTCTGGGCCT 59.019 52.381 4.53 0.00 0.00 5.19
204 205 1.003696 GGGATGCTAATAGTCTGGGCC 59.996 57.143 0.00 0.00 0.00 5.80
205 206 1.981495 AGGGATGCTAATAGTCTGGGC 59.019 52.381 0.00 0.00 0.00 5.36
206 207 4.160329 TGTAGGGATGCTAATAGTCTGGG 58.840 47.826 0.00 0.00 0.00 4.45
207 208 5.481824 TGATGTAGGGATGCTAATAGTCTGG 59.518 44.000 0.00 0.00 0.00 3.86
208 209 6.596309 TGATGTAGGGATGCTAATAGTCTG 57.404 41.667 0.00 0.00 0.00 3.51
209 210 6.784969 AGTTGATGTAGGGATGCTAATAGTCT 59.215 38.462 0.00 0.00 0.00 3.24
210 211 6.870965 CAGTTGATGTAGGGATGCTAATAGTC 59.129 42.308 0.00 0.00 0.00 2.59
211 212 6.239714 CCAGTTGATGTAGGGATGCTAATAGT 60.240 42.308 0.00 0.00 0.00 2.12
212 213 6.014242 TCCAGTTGATGTAGGGATGCTAATAG 60.014 42.308 0.00 0.00 0.00 1.73
213 214 5.843969 TCCAGTTGATGTAGGGATGCTAATA 59.156 40.000 0.00 0.00 0.00 0.98
214 215 4.660303 TCCAGTTGATGTAGGGATGCTAAT 59.340 41.667 0.00 0.00 0.00 1.73
215 216 4.037222 TCCAGTTGATGTAGGGATGCTAA 58.963 43.478 0.00 0.00 0.00 3.09
216 217 3.653164 TCCAGTTGATGTAGGGATGCTA 58.347 45.455 0.00 0.00 0.00 3.49
217 218 2.481441 TCCAGTTGATGTAGGGATGCT 58.519 47.619 0.00 0.00 0.00 3.79
218 219 3.498774 ATCCAGTTGATGTAGGGATGC 57.501 47.619 0.00 0.00 37.00 3.91
219 220 4.840680 TCCTATCCAGTTGATGTAGGGATG 59.159 45.833 0.00 0.00 38.72 3.51
220 221 5.090139 CTCCTATCCAGTTGATGTAGGGAT 58.910 45.833 0.00 0.00 41.13 3.85
221 222 4.078571 ACTCCTATCCAGTTGATGTAGGGA 60.079 45.833 0.00 0.00 32.19 4.20
222 223 4.227197 ACTCCTATCCAGTTGATGTAGGG 58.773 47.826 0.00 0.00 32.19 3.53
223 224 5.047660 GCTACTCCTATCCAGTTGATGTAGG 60.048 48.000 0.00 0.00 34.76 3.18
224 225 5.536538 TGCTACTCCTATCCAGTTGATGTAG 59.463 44.000 0.00 0.00 34.76 2.74
225 226 5.454966 TGCTACTCCTATCCAGTTGATGTA 58.545 41.667 0.00 0.00 34.76 2.29
226 227 4.290093 TGCTACTCCTATCCAGTTGATGT 58.710 43.478 0.00 0.00 34.76 3.06
227 228 4.944619 TGCTACTCCTATCCAGTTGATG 57.055 45.455 0.00 0.00 34.76 3.07
228 229 6.784969 ACTATTGCTACTCCTATCCAGTTGAT 59.215 38.462 0.00 0.00 37.49 2.57
229 230 6.136857 ACTATTGCTACTCCTATCCAGTTGA 58.863 40.000 0.00 0.00 0.00 3.18
230 231 6.412362 ACTATTGCTACTCCTATCCAGTTG 57.588 41.667 0.00 0.00 0.00 3.16
231 232 6.384305 ACAACTATTGCTACTCCTATCCAGTT 59.616 38.462 0.00 0.00 0.00 3.16
232 233 5.900123 ACAACTATTGCTACTCCTATCCAGT 59.100 40.000 0.00 0.00 0.00 4.00
233 234 6.412362 ACAACTATTGCTACTCCTATCCAG 57.588 41.667 0.00 0.00 0.00 3.86
234 235 6.156256 ACAACAACTATTGCTACTCCTATCCA 59.844 38.462 0.00 0.00 32.47 3.41
235 236 6.583562 ACAACAACTATTGCTACTCCTATCC 58.416 40.000 0.00 0.00 32.47 2.59
236 237 7.493367 AGACAACAACTATTGCTACTCCTATC 58.507 38.462 0.00 0.00 32.47 2.08
237 238 7.425224 AGACAACAACTATTGCTACTCCTAT 57.575 36.000 0.00 0.00 32.47 2.57
238 239 6.852420 AGACAACAACTATTGCTACTCCTA 57.148 37.500 0.00 0.00 32.47 2.94
239 240 5.746990 AGACAACAACTATTGCTACTCCT 57.253 39.130 0.00 0.00 32.47 3.69
240 241 6.752815 GTCTAGACAACAACTATTGCTACTCC 59.247 42.308 18.20 0.00 32.47 3.85
241 242 6.469595 CGTCTAGACAACAACTATTGCTACTC 59.530 42.308 22.37 0.00 32.47 2.59
242 243 6.323266 CGTCTAGACAACAACTATTGCTACT 58.677 40.000 22.37 0.00 32.47 2.57
243 244 5.515626 CCGTCTAGACAACAACTATTGCTAC 59.484 44.000 22.37 0.00 32.47 3.58
244 245 5.184479 ACCGTCTAGACAACAACTATTGCTA 59.816 40.000 22.37 0.00 32.47 3.49
245 246 4.021368 ACCGTCTAGACAACAACTATTGCT 60.021 41.667 22.37 0.00 32.47 3.91
246 247 4.091509 CACCGTCTAGACAACAACTATTGC 59.908 45.833 22.37 0.00 32.47 3.56
247 248 4.625742 CCACCGTCTAGACAACAACTATTG 59.374 45.833 22.37 2.24 35.59 1.90
248 249 4.817517 CCACCGTCTAGACAACAACTATT 58.182 43.478 22.37 0.00 0.00 1.73
249 250 3.368116 GCCACCGTCTAGACAACAACTAT 60.368 47.826 22.37 0.00 0.00 2.12
250 251 2.029649 GCCACCGTCTAGACAACAACTA 60.030 50.000 22.37 0.00 0.00 2.24
251 252 1.270147 GCCACCGTCTAGACAACAACT 60.270 52.381 22.37 0.00 0.00 3.16
252 253 1.145803 GCCACCGTCTAGACAACAAC 58.854 55.000 22.37 5.19 0.00 3.32
253 254 1.045407 AGCCACCGTCTAGACAACAA 58.955 50.000 22.37 0.00 0.00 2.83
254 255 1.000506 GAAGCCACCGTCTAGACAACA 59.999 52.381 22.37 0.00 0.00 3.33
255 256 1.000506 TGAAGCCACCGTCTAGACAAC 59.999 52.381 22.37 6.59 0.00 3.32
256 257 1.272490 CTGAAGCCACCGTCTAGACAA 59.728 52.381 22.37 0.00 0.00 3.18
257 258 0.888619 CTGAAGCCACCGTCTAGACA 59.111 55.000 22.37 0.00 0.00 3.41
258 259 1.135344 GTCTGAAGCCACCGTCTAGAC 60.135 57.143 13.18 13.18 0.00 2.59
259 260 1.174783 GTCTGAAGCCACCGTCTAGA 58.825 55.000 0.00 0.00 0.00 2.43
260 261 1.178276 AGTCTGAAGCCACCGTCTAG 58.822 55.000 0.00 0.00 0.00 2.43
261 262 1.629043 AAGTCTGAAGCCACCGTCTA 58.371 50.000 0.00 0.00 0.00 2.59
262 263 1.272769 GTAAGTCTGAAGCCACCGTCT 59.727 52.381 0.00 0.00 0.00 4.18
263 264 1.272769 AGTAAGTCTGAAGCCACCGTC 59.727 52.381 0.00 0.00 0.00 4.79
264 265 1.000955 CAGTAAGTCTGAAGCCACCGT 59.999 52.381 0.00 0.00 46.27 4.83
265 266 1.000955 ACAGTAAGTCTGAAGCCACCG 59.999 52.381 1.79 0.00 46.27 4.94
266 267 2.841442 ACAGTAAGTCTGAAGCCACC 57.159 50.000 1.79 0.00 46.27 4.61
267 268 7.493367 AGATATAACAGTAAGTCTGAAGCCAC 58.507 38.462 1.79 0.00 46.27 5.01
268 269 7.661536 AGATATAACAGTAAGTCTGAAGCCA 57.338 36.000 1.79 0.00 46.27 4.75
269 270 8.950208 AAAGATATAACAGTAAGTCTGAAGCC 57.050 34.615 1.79 0.00 46.27 4.35
305 306 9.364989 GCAGCCACTTTATTAATTATTCACAAA 57.635 29.630 0.00 0.00 0.00 2.83
306 307 8.526978 TGCAGCCACTTTATTAATTATTCACAA 58.473 29.630 0.00 0.00 0.00 3.33
307 308 8.060931 TGCAGCCACTTTATTAATTATTCACA 57.939 30.769 0.00 0.00 0.00 3.58
308 309 8.971321 CATGCAGCCACTTTATTAATTATTCAC 58.029 33.333 0.00 0.00 0.00 3.18
309 310 7.652909 GCATGCAGCCACTTTATTAATTATTCA 59.347 33.333 14.21 0.00 37.23 2.57
310 311 7.652909 TGCATGCAGCCACTTTATTAATTATTC 59.347 33.333 18.46 0.00 44.83 1.75
311 312 7.499292 TGCATGCAGCCACTTTATTAATTATT 58.501 30.769 18.46 0.00 44.83 1.40
312 313 7.053316 TGCATGCAGCCACTTTATTAATTAT 57.947 32.000 18.46 0.00 44.83 1.28
313 314 6.462552 TGCATGCAGCCACTTTATTAATTA 57.537 33.333 18.46 0.00 44.83 1.40
314 315 5.341872 TGCATGCAGCCACTTTATTAATT 57.658 34.783 18.46 0.00 44.83 1.40
315 316 5.535333 GATGCATGCAGCCACTTTATTAAT 58.465 37.500 25.21 2.11 44.83 1.40
316 317 4.497842 CGATGCATGCAGCCACTTTATTAA 60.498 41.667 28.76 0.00 44.83 1.40
317 318 3.003585 CGATGCATGCAGCCACTTTATTA 59.996 43.478 28.76 0.00 44.83 0.98
318 319 2.223641 CGATGCATGCAGCCACTTTATT 60.224 45.455 28.76 6.59 44.83 1.40
319 320 1.335810 CGATGCATGCAGCCACTTTAT 59.664 47.619 28.76 7.39 44.83 1.40
320 321 0.734309 CGATGCATGCAGCCACTTTA 59.266 50.000 28.76 0.09 44.83 1.85
321 322 1.509463 CGATGCATGCAGCCACTTT 59.491 52.632 28.76 9.02 44.83 2.66
322 323 3.060020 GCGATGCATGCAGCCACTT 62.060 57.895 28.76 9.83 44.83 3.16
323 324 3.515286 GCGATGCATGCAGCCACT 61.515 61.111 28.76 10.64 44.83 4.00
327 328 4.266070 CTGGGCGATGCATGCAGC 62.266 66.667 25.69 25.69 45.96 5.25
328 329 0.604511 TATCTGGGCGATGCATGCAG 60.605 55.000 26.69 14.50 33.48 4.41
329 330 0.604511 CTATCTGGGCGATGCATGCA 60.605 55.000 25.04 25.04 33.48 3.96
330 331 0.604780 ACTATCTGGGCGATGCATGC 60.605 55.000 11.82 11.82 33.48 4.06
331 332 2.289010 TGTACTATCTGGGCGATGCATG 60.289 50.000 2.46 0.00 33.48 4.06
332 333 1.970640 TGTACTATCTGGGCGATGCAT 59.029 47.619 0.00 0.00 33.48 3.96
333 334 1.341209 CTGTACTATCTGGGCGATGCA 59.659 52.381 0.00 0.00 33.48 3.96
334 335 1.613925 TCTGTACTATCTGGGCGATGC 59.386 52.381 0.00 0.00 33.48 3.91
335 336 2.230025 CCTCTGTACTATCTGGGCGATG 59.770 54.545 0.00 0.00 33.48 3.84
336 337 2.520069 CCTCTGTACTATCTGGGCGAT 58.480 52.381 0.00 0.00 36.11 4.58
337 338 1.982660 CCTCTGTACTATCTGGGCGA 58.017 55.000 0.00 0.00 0.00 5.54
338 339 0.315568 GCCTCTGTACTATCTGGGCG 59.684 60.000 0.00 0.00 0.00 6.13
339 340 0.682292 GGCCTCTGTACTATCTGGGC 59.318 60.000 0.00 0.00 37.61 5.36
340 341 0.962489 CGGCCTCTGTACTATCTGGG 59.038 60.000 0.00 0.00 0.00 4.45
341 342 0.962489 CCGGCCTCTGTACTATCTGG 59.038 60.000 0.00 0.00 0.00 3.86
342 343 0.962489 CCCGGCCTCTGTACTATCTG 59.038 60.000 0.00 0.00 0.00 2.90
343 344 0.178958 CCCCGGCCTCTGTACTATCT 60.179 60.000 0.00 0.00 0.00 1.98
344 345 1.186267 CCCCCGGCCTCTGTACTATC 61.186 65.000 0.00 0.00 0.00 2.08
345 346 1.152312 CCCCCGGCCTCTGTACTAT 60.152 63.158 0.00 0.00 0.00 2.12
346 347 2.281091 CCCCCGGCCTCTGTACTA 59.719 66.667 0.00 0.00 0.00 1.82
347 348 3.978410 GACCCCCGGCCTCTGTACT 62.978 68.421 0.00 0.00 0.00 2.73
348 349 3.468140 GACCCCCGGCCTCTGTAC 61.468 72.222 0.00 0.00 0.00 2.90
349 350 4.791069 GGACCCCCGGCCTCTGTA 62.791 72.222 0.00 0.00 0.00 2.74
354 355 4.677151 AAGAAGGACCCCCGGCCT 62.677 66.667 0.00 0.00 37.58 5.19
355 356 4.111053 GAAGAAGGACCCCCGGCC 62.111 72.222 0.00 0.00 37.58 6.13
356 357 2.138453 AAAGAAGAAGGACCCCCGGC 62.138 60.000 0.00 0.00 37.58 6.13
357 358 1.282382 TAAAGAAGAAGGACCCCCGG 58.718 55.000 0.00 0.00 37.58 5.73
358 359 3.428413 TTTAAAGAAGAAGGACCCCCG 57.572 47.619 0.00 0.00 37.58 5.73
381 382 7.170658 CACGATTCAAACCACACCAATATTTTT 59.829 33.333 0.00 0.00 0.00 1.94
382 383 6.644592 CACGATTCAAACCACACCAATATTTT 59.355 34.615 0.00 0.00 0.00 1.82
383 384 6.155827 CACGATTCAAACCACACCAATATTT 58.844 36.000 0.00 0.00 0.00 1.40
384 385 5.242838 ACACGATTCAAACCACACCAATATT 59.757 36.000 0.00 0.00 0.00 1.28
389 390 2.045561 ACACGATTCAAACCACACCA 57.954 45.000 0.00 0.00 0.00 4.17
404 405 1.564622 CACCGCTCTGTTCAACACG 59.435 57.895 0.00 0.00 0.00 4.49
405 406 1.279840 GCACCGCTCTGTTCAACAC 59.720 57.895 0.00 0.00 0.00 3.32
414 419 2.815308 CGGATTAGGCACCGCTCT 59.185 61.111 0.00 0.00 42.55 4.09
578 590 2.203877 TGGTGGGGGCGTAAGTCT 60.204 61.111 0.00 0.00 45.30 3.24
626 638 2.170187 GTGAAGACTGAGGGCATGAGAT 59.830 50.000 0.00 0.00 0.00 2.75
676 2417 2.035576 CCTATACTCTACGGGTGTTGGC 59.964 54.545 0.00 0.00 0.00 4.52
702 2455 3.731652 TTTCCAGGAAACTACGTCGAA 57.268 42.857 10.90 0.00 40.21 3.71
716 2469 2.806608 GCCATGGCATACATTTCCAG 57.193 50.000 32.08 0.00 37.84 3.86
734 2487 3.977244 CCACTGGTTGGCGGTTGC 61.977 66.667 0.00 0.00 39.07 4.17
735 2488 2.203280 TCCACTGGTTGGCGGTTG 60.203 61.111 0.00 0.00 46.47 3.77
736 2489 2.203294 GTCCACTGGTTGGCGGTT 60.203 61.111 0.00 0.00 46.47 4.44
739 2492 0.888736 TTCATGTCCACTGGTTGGCG 60.889 55.000 0.00 0.00 46.47 5.69
768 2534 2.025418 CGTCGTTTCCCTTGGGTCG 61.025 63.158 5.51 9.35 0.00 4.79
769 2535 2.322830 GCGTCGTTTCCCTTGGGTC 61.323 63.158 5.51 0.00 0.00 4.46
777 2543 1.433837 ATAATGCCCGCGTCGTTTCC 61.434 55.000 4.92 0.00 0.00 3.13
780 2546 2.177580 CCATAATGCCCGCGTCGTT 61.178 57.895 4.92 6.83 0.00 3.85
789 2555 2.638480 TACAGTCCAGCCATAATGCC 57.362 50.000 0.00 0.00 0.00 4.40
795 2561 1.478105 CCATGCATACAGTCCAGCCAT 60.478 52.381 0.00 0.00 0.00 4.40
796 2562 0.107066 CCATGCATACAGTCCAGCCA 60.107 55.000 0.00 0.00 0.00 4.75
798 2564 1.755179 AACCATGCATACAGTCCAGC 58.245 50.000 0.00 0.00 0.00 4.85
799 2565 4.707105 TGATAACCATGCATACAGTCCAG 58.293 43.478 0.00 0.00 0.00 3.86
830 2596 2.351888 GACGCAAACACACCACGC 60.352 61.111 0.00 0.00 0.00 5.34
840 2606 2.092291 GCCTGATCGACGACGCAAA 61.092 57.895 0.00 0.00 39.58 3.68
997 2772 2.203015 CGGCTTCGGGTACATGGG 60.203 66.667 0.00 0.00 0.00 4.00
1083 2867 4.151582 GGCGCCGCCTGGTAGTAA 62.152 66.667 23.30 0.00 46.69 2.24
1689 3495 1.531149 CACAAGGACGCACACTTTAGG 59.469 52.381 0.00 0.00 0.00 2.69
1718 3524 5.737635 GCCGAACAGCATAGAGATTACTTCT 60.738 44.000 0.00 0.00 37.41 2.85
1730 3536 1.075542 CAAAGACGCCGAACAGCATA 58.924 50.000 0.00 0.00 0.00 3.14
1736 3542 3.343421 ACCGCAAAGACGCCGAAC 61.343 61.111 0.00 0.00 0.00 3.95
1762 3568 7.907214 ATACAGAAACCTGCAAAGTAAGTAG 57.093 36.000 0.00 0.00 35.09 2.57
1766 3572 8.630054 ATTGTATACAGAAACCTGCAAAGTAA 57.370 30.769 5.56 0.00 35.09 2.24
1929 3737 2.830321 CGTTAGAGGTGTCCTTACCCTT 59.170 50.000 0.00 0.00 41.83 3.95
1933 3741 1.468736 CGCCGTTAGAGGTGTCCTTAC 60.469 57.143 0.00 0.00 37.04 2.34
1939 3747 2.643232 GGGTCGCCGTTAGAGGTGT 61.643 63.158 0.00 0.00 42.18 4.16
1946 3754 2.091852 AAATTTACGGGTCGCCGTTA 57.908 45.000 12.38 0.73 44.38 3.18
1987 3795 1.918293 CTGTGGACTGGTGCCCCTA 60.918 63.158 0.00 0.00 0.00 3.53
2042 3850 6.993786 TTCGATTTGTTGGCAAGATGTATA 57.006 33.333 0.00 0.00 35.82 1.47
2060 3899 6.113411 AGGAATTTCGTCCAGTTAATTCGAT 58.887 36.000 0.00 0.00 40.48 3.59
2137 3977 6.038161 CGTCTTGTTTATATGAAATCTGGCCA 59.962 38.462 4.71 4.71 0.00 5.36
2158 3998 5.560375 CGTCGTGTCTATATGAAATCCGTCT 60.560 44.000 0.00 0.00 0.00 4.18
2162 4002 5.117355 TCCGTCGTGTCTATATGAAATCC 57.883 43.478 0.00 0.00 0.00 3.01
2165 4005 5.684184 CGAAATCCGTCGTGTCTATATGAAA 59.316 40.000 0.00 0.00 36.26 2.69
2200 4067 4.040376 CGGACTAGTACCGCTTAATTGAC 58.960 47.826 17.03 0.00 43.74 3.18
2214 4081 1.076632 CCTCCAGAGCCGGACTAGT 60.077 63.158 5.05 0.00 0.00 2.57
2366 4241 3.760035 GACAGCTCCGCTTCCCGA 61.760 66.667 0.00 0.00 36.40 5.14
2427 4311 0.748729 TCCCGTTGACGCCAAGTTTT 60.749 50.000 0.00 0.00 38.18 2.43
2523 4407 4.451150 GCCGTCATGTCTGCGGGA 62.451 66.667 17.16 0.00 40.29 5.14
2529 4413 4.457496 CCGCCAGCCGTCATGTCT 62.457 66.667 0.00 0.00 34.38 3.41
2564 4461 1.654954 CCGACGACGAGGAGGACAAT 61.655 60.000 9.28 0.00 42.66 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.