Multiple sequence alignment - TraesCS1D01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G397900 chr1D 100.000 4906 0 0 1 4906 465177388 465172483 0.000000e+00 9060.0
1 TraesCS1D01G397900 chr1D 99.288 281 2 0 1 281 382901352 382901072 4.380000e-140 508.0
2 TraesCS1D01G397900 chr1D 96.466 283 6 1 1 283 42277868 42277590 9.620000e-127 464.0
3 TraesCS1D01G397900 chr1A 90.761 3009 192 42 281 3226 557560391 557557406 0.000000e+00 3938.0
4 TraesCS1D01G397900 chr1A 84.661 502 49 19 4420 4902 557555596 557555104 4.440000e-130 475.0
5 TraesCS1D01G397900 chr1A 88.778 401 25 6 3709 4093 557556304 557555908 1.600000e-129 473.0
6 TraesCS1D01G397900 chr1A 88.024 167 15 3 4108 4273 557555862 557555700 5.010000e-45 193.0
7 TraesCS1D01G397900 chr1A 100.000 44 0 0 4381 4424 547903758 547903801 1.130000e-11 82.4
8 TraesCS1D01G397900 chr1A 100.000 41 0 0 4384 4424 543125376 543125336 5.270000e-10 76.8
9 TraesCS1D01G397900 chr1A 84.524 84 4 6 4283 4365 557555658 557555583 1.890000e-09 75.0
10 TraesCS1D01G397900 chr1B 90.735 2871 149 53 1527 4335 642073595 642070780 0.000000e+00 3720.0
11 TraesCS1D01G397900 chr1B 96.989 930 24 1 564 1493 642074515 642073590 0.000000e+00 1559.0
12 TraesCS1D01G397900 chr1B 88.817 465 29 14 4420 4862 642070415 642069952 2.580000e-152 549.0
13 TraesCS1D01G397900 chr7D 97.518 282 3 1 1 282 56158693 56158416 3.440000e-131 479.0
14 TraesCS1D01G397900 chr7D 97.143 280 7 1 3 282 531096722 531097000 5.750000e-129 472.0
15 TraesCS1D01G397900 chr3D 97.518 282 3 1 1 282 170800221 170800498 3.440000e-131 479.0
16 TraesCS1D01G397900 chr3D 97.153 281 4 1 1 281 12370700 12370424 5.750000e-129 472.0
17 TraesCS1D01G397900 chr3D 96.797 281 5 1 1 281 45544114 45543838 2.670000e-127 466.0
18 TraesCS1D01G397900 chr3D 95.848 289 10 2 1 288 496226563 496226850 2.670000e-127 466.0
19 TraesCS1D01G397900 chr3D 95.819 287 7 2 1 286 598220667 598220385 4.480000e-125 459.0
20 TraesCS1D01G397900 chr3D 94.643 56 1 2 4374 4429 3769441 3769494 8.750000e-13 86.1
21 TraesCS1D01G397900 chr3D 96.078 51 1 1 4376 4425 602276411 602276361 1.130000e-11 82.4
22 TraesCS1D01G397900 chr5B 81.974 233 36 6 4488 4715 26029654 26029885 5.010000e-45 193.0
23 TraesCS1D01G397900 chr5B 81.545 233 36 7 4489 4716 379450632 379450862 8.390000e-43 185.0
24 TraesCS1D01G397900 chr7B 82.018 228 35 6 4496 4718 595459549 595459323 6.480000e-44 189.0
25 TraesCS1D01G397900 chr7B 100.000 51 0 0 4374 4424 579994123 579994073 1.450000e-15 95.3
26 TraesCS1D01G397900 chr7A 82.273 220 34 5 4500 4715 286994406 286994624 8.390000e-43 185.0
27 TraesCS1D01G397900 chr7A 81.172 239 36 9 4489 4721 211807111 211806876 3.020000e-42 183.0
28 TraesCS1D01G397900 chr7A 100.000 46 0 0 4379 4424 173407513 173407558 8.750000e-13 86.1
29 TraesCS1D01G397900 chr3A 82.938 211 30 6 4514 4719 743471567 743471358 8.390000e-43 185.0
30 TraesCS1D01G397900 chr3A 81.778 225 36 5 4495 4715 487442970 487442747 3.020000e-42 183.0
31 TraesCS1D01G397900 chr3A 94.737 57 2 1 4370 4425 67575594 67575538 2.430000e-13 87.9
32 TraesCS1D01G397900 chr2B 80.753 239 38 8 4485 4718 40498874 40498639 3.900000e-41 180.0
33 TraesCS1D01G397900 chr6B 97.872 47 0 1 4378 4424 100571634 100571679 4.070000e-11 80.5
34 TraesCS1D01G397900 chr5A 90.741 54 5 0 4373 4426 531521977 531522030 6.810000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G397900 chr1D 465172483 465177388 4905 True 9060.000000 9060 100.000000 1 4906 1 chr1D.!!$R3 4905
1 TraesCS1D01G397900 chr1A 557555104 557560391 5287 True 1030.800000 3938 87.349600 281 4902 5 chr1A.!!$R2 4621
2 TraesCS1D01G397900 chr1B 642069952 642074515 4563 True 1942.666667 3720 92.180333 564 4862 3 chr1B.!!$R1 4298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.025513 CGTTGAGCTGCGCATAGAAC 59.974 55.000 12.24 10.86 0.00 3.01 F
272 273 0.110056 GTCCGTGCGTCTTCGTTCTA 60.110 55.000 0.00 0.00 39.49 2.10 F
273 274 0.592637 TCCGTGCGTCTTCGTTCTAA 59.407 50.000 0.00 0.00 39.49 2.10 F
274 275 1.001487 TCCGTGCGTCTTCGTTCTAAA 60.001 47.619 0.00 0.00 39.49 1.85 F
493 498 1.459450 GCGAGCTTCCCCAATGTTAA 58.541 50.000 0.00 0.00 0.00 2.01 F
536 541 1.566018 CTGTTTTCACGTCGGAGCCC 61.566 60.000 0.00 0.00 0.00 5.19 F
539 544 2.035237 TTTTCACGTCGGAGCCCTGT 62.035 55.000 0.00 0.00 0.00 4.00 F
1829 1840 2.289274 CGACGCTACTCATCATCAGACT 59.711 50.000 0.00 0.00 0.00 3.24 F
2893 2940 0.039074 ACACGTTGCCTCTCTTCGAG 60.039 55.000 0.00 0.00 39.57 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 1345 0.984230 TGACAAGATCAGACACCCCC 59.016 55.000 0.00 0.00 31.91 5.40 R
1807 1818 1.002359 TCTGATGATGAGTAGCGTCGC 60.002 52.381 9.80 9.80 35.18 5.19 R
1856 1867 1.465689 CGACACAAAATCGGATGGTGC 60.466 52.381 14.08 8.61 35.92 5.01 R
1857 1868 1.804151 ACGACACAAAATCGGATGGTG 59.196 47.619 13.10 13.10 43.95 4.17 R
1995 2029 1.893062 CAGCCGTCCACTCATCTCA 59.107 57.895 0.00 0.00 0.00 3.27 R
2198 2240 3.137544 ACGATTAACCTATGGCCATGGAA 59.862 43.478 29.26 16.36 0.00 3.53 R
2211 2253 5.737290 CGAAAATGATGGACAACGATTAACC 59.263 40.000 0.00 0.00 0.00 2.85 R
3240 3311 1.079073 CCCCAACCCCAAGCAATCT 59.921 57.895 0.00 0.00 0.00 2.40 R
4685 5871 0.321564 TCCAGGTGTGTAGTGCATGC 60.322 55.000 11.82 11.82 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.620615 CTCAACAACGTTTGCTGCA 57.379 47.368 0.00 0.00 0.00 4.41
19 20 1.906757 CTCAACAACGTTTGCTGCAA 58.093 45.000 11.69 11.69 0.00 4.08
20 21 1.847999 CTCAACAACGTTTGCTGCAAG 59.152 47.619 15.39 7.60 0.00 4.01
21 22 1.201181 TCAACAACGTTTGCTGCAAGT 59.799 42.857 15.39 8.26 35.30 3.16
22 23 1.583404 CAACAACGTTTGCTGCAAGTC 59.417 47.619 15.39 11.52 35.30 3.01
23 24 1.094785 ACAACGTTTGCTGCAAGTCT 58.905 45.000 15.39 0.00 35.30 3.24
24 25 2.285083 ACAACGTTTGCTGCAAGTCTA 58.715 42.857 15.39 0.00 35.30 2.59
25 26 2.878406 ACAACGTTTGCTGCAAGTCTAT 59.122 40.909 15.39 0.00 35.30 1.98
26 27 3.228749 CAACGTTTGCTGCAAGTCTATG 58.771 45.455 15.39 8.62 35.30 2.23
27 28 2.494059 ACGTTTGCTGCAAGTCTATGT 58.506 42.857 15.39 9.26 35.30 2.29
28 29 2.224079 ACGTTTGCTGCAAGTCTATGTG 59.776 45.455 15.39 3.52 35.30 3.21
29 30 2.480037 CGTTTGCTGCAAGTCTATGTGA 59.520 45.455 15.39 0.00 35.30 3.58
30 31 3.125829 CGTTTGCTGCAAGTCTATGTGAT 59.874 43.478 15.39 0.00 35.30 3.06
31 32 4.409570 GTTTGCTGCAAGTCTATGTGATG 58.590 43.478 15.39 0.00 35.30 3.07
32 33 2.635714 TGCTGCAAGTCTATGTGATGG 58.364 47.619 0.00 0.00 35.30 3.51
33 34 1.332997 GCTGCAAGTCTATGTGATGGC 59.667 52.381 0.00 0.00 35.30 4.40
34 35 2.915349 CTGCAAGTCTATGTGATGGCT 58.085 47.619 0.00 0.00 0.00 4.75
35 36 3.742327 GCTGCAAGTCTATGTGATGGCTA 60.742 47.826 0.00 0.00 35.30 3.93
36 37 4.056740 CTGCAAGTCTATGTGATGGCTAG 58.943 47.826 0.00 0.00 0.00 3.42
37 38 3.181462 TGCAAGTCTATGTGATGGCTAGG 60.181 47.826 0.00 0.00 0.00 3.02
38 39 3.805108 GCAAGTCTATGTGATGGCTAGGG 60.805 52.174 0.00 0.00 0.00 3.53
39 40 3.619900 AGTCTATGTGATGGCTAGGGA 57.380 47.619 0.00 0.00 0.00 4.20
40 41 3.505386 AGTCTATGTGATGGCTAGGGAG 58.495 50.000 0.00 0.00 0.00 4.30
51 52 2.829741 GCTAGGGAGCCTTGACTATG 57.170 55.000 0.00 0.00 43.49 2.23
52 53 1.346068 GCTAGGGAGCCTTGACTATGG 59.654 57.143 0.00 0.00 43.49 2.74
53 54 2.683768 CTAGGGAGCCTTGACTATGGT 58.316 52.381 0.00 0.00 34.61 3.55
54 55 1.207791 AGGGAGCCTTGACTATGGTG 58.792 55.000 0.00 0.00 0.00 4.17
55 56 1.204146 GGGAGCCTTGACTATGGTGA 58.796 55.000 0.00 0.00 0.00 4.02
56 57 1.771255 GGGAGCCTTGACTATGGTGAT 59.229 52.381 0.00 0.00 0.00 3.06
57 58 2.486191 GGGAGCCTTGACTATGGTGATG 60.486 54.545 0.00 0.00 0.00 3.07
58 59 2.171448 GGAGCCTTGACTATGGTGATGT 59.829 50.000 0.00 0.00 0.00 3.06
59 60 3.462021 GAGCCTTGACTATGGTGATGTC 58.538 50.000 0.00 0.00 0.00 3.06
60 61 2.171448 AGCCTTGACTATGGTGATGTCC 59.829 50.000 0.00 0.00 0.00 4.02
61 62 2.092968 GCCTTGACTATGGTGATGTCCA 60.093 50.000 0.00 0.00 42.01 4.02
63 64 4.132336 CCTTGACTATGGTGATGTCCATG 58.868 47.826 8.27 0.00 46.27 3.66
64 65 3.843893 TGACTATGGTGATGTCCATGG 57.156 47.619 4.97 4.97 46.27 3.66
67 68 3.131709 CTATGGTGATGTCCATGGTCC 57.868 52.381 12.58 4.37 46.27 4.46
68 69 0.552848 ATGGTGATGTCCATGGTCCC 59.447 55.000 12.58 3.37 45.26 4.46
69 70 0.549902 TGGTGATGTCCATGGTCCCT 60.550 55.000 12.58 0.00 31.96 4.20
70 71 0.625849 GGTGATGTCCATGGTCCCTT 59.374 55.000 12.58 0.00 0.00 3.95
71 72 1.005924 GGTGATGTCCATGGTCCCTTT 59.994 52.381 12.58 0.00 0.00 3.11
72 73 2.557452 GGTGATGTCCATGGTCCCTTTT 60.557 50.000 12.58 0.00 0.00 2.27
73 74 2.493278 GTGATGTCCATGGTCCCTTTTG 59.507 50.000 12.58 0.00 0.00 2.44
74 75 2.109834 TGATGTCCATGGTCCCTTTTGT 59.890 45.455 12.58 0.00 0.00 2.83
75 76 2.765689 TGTCCATGGTCCCTTTTGTT 57.234 45.000 12.58 0.00 0.00 2.83
76 77 2.315176 TGTCCATGGTCCCTTTTGTTG 58.685 47.619 12.58 0.00 0.00 3.33
77 78 1.000843 GTCCATGGTCCCTTTTGTTGC 59.999 52.381 12.58 0.00 0.00 4.17
78 79 1.133199 TCCATGGTCCCTTTTGTTGCT 60.133 47.619 12.58 0.00 0.00 3.91
79 80 1.693606 CCATGGTCCCTTTTGTTGCTT 59.306 47.619 2.57 0.00 0.00 3.91
80 81 2.548493 CCATGGTCCCTTTTGTTGCTTG 60.548 50.000 2.57 0.00 0.00 4.01
81 82 2.151502 TGGTCCCTTTTGTTGCTTGA 57.848 45.000 0.00 0.00 0.00 3.02
82 83 1.754226 TGGTCCCTTTTGTTGCTTGAC 59.246 47.619 0.00 0.00 0.00 3.18
83 84 1.269051 GGTCCCTTTTGTTGCTTGACG 60.269 52.381 0.00 0.00 0.00 4.35
84 85 1.673920 GTCCCTTTTGTTGCTTGACGA 59.326 47.619 0.00 0.00 0.00 4.20
85 86 1.946768 TCCCTTTTGTTGCTTGACGAG 59.053 47.619 0.00 0.00 0.00 4.18
93 94 3.782244 GCTTGACGAGCCTGCGTG 61.782 66.667 2.95 0.00 45.72 5.34
94 95 3.782244 CTTGACGAGCCTGCGTGC 61.782 66.667 1.42 0.00 45.72 5.34
95 96 4.299547 TTGACGAGCCTGCGTGCT 62.300 61.111 0.00 0.00 45.72 4.40
101 102 2.262915 AGCCTGCGTGCTCTGTAC 59.737 61.111 0.00 0.00 36.75 2.90
102 103 3.181967 GCCTGCGTGCTCTGTACG 61.182 66.667 3.98 3.98 43.88 3.67
103 104 2.507102 CCTGCGTGCTCTGTACGG 60.507 66.667 9.83 0.00 41.56 4.02
104 105 2.507102 CTGCGTGCTCTGTACGGG 60.507 66.667 9.83 0.00 41.56 5.28
105 106 4.735132 TGCGTGCTCTGTACGGGC 62.735 66.667 9.83 5.09 41.56 6.13
106 107 4.436998 GCGTGCTCTGTACGGGCT 62.437 66.667 13.94 0.00 41.56 5.19
107 108 3.060020 GCGTGCTCTGTACGGGCTA 62.060 63.158 13.94 1.79 41.56 3.93
108 109 1.734137 CGTGCTCTGTACGGGCTAT 59.266 57.895 13.94 0.00 37.94 2.97
109 110 0.595053 CGTGCTCTGTACGGGCTATG 60.595 60.000 13.94 5.25 37.94 2.23
110 111 0.876342 GTGCTCTGTACGGGCTATGC 60.876 60.000 13.94 7.00 0.00 3.14
122 123 2.938956 GGCTATGCCCTGTAATGTCT 57.061 50.000 0.00 0.00 44.06 3.41
123 124 3.214696 GGCTATGCCCTGTAATGTCTT 57.785 47.619 0.00 0.00 44.06 3.01
124 125 3.555966 GGCTATGCCCTGTAATGTCTTT 58.444 45.455 0.00 0.00 44.06 2.52
125 126 3.565902 GGCTATGCCCTGTAATGTCTTTC 59.434 47.826 0.00 0.00 44.06 2.62
126 127 4.455606 GCTATGCCCTGTAATGTCTTTCT 58.544 43.478 0.00 0.00 0.00 2.52
127 128 4.884164 GCTATGCCCTGTAATGTCTTTCTT 59.116 41.667 0.00 0.00 0.00 2.52
128 129 5.358160 GCTATGCCCTGTAATGTCTTTCTTT 59.642 40.000 0.00 0.00 0.00 2.52
129 130 5.649782 ATGCCCTGTAATGTCTTTCTTTG 57.350 39.130 0.00 0.00 0.00 2.77
130 131 3.826157 TGCCCTGTAATGTCTTTCTTTGG 59.174 43.478 0.00 0.00 0.00 3.28
131 132 3.826729 GCCCTGTAATGTCTTTCTTTGGT 59.173 43.478 0.00 0.00 0.00 3.67
132 133 4.280929 GCCCTGTAATGTCTTTCTTTGGTT 59.719 41.667 0.00 0.00 0.00 3.67
133 134 5.221441 GCCCTGTAATGTCTTTCTTTGGTTT 60.221 40.000 0.00 0.00 0.00 3.27
134 135 6.447162 CCCTGTAATGTCTTTCTTTGGTTTC 58.553 40.000 0.00 0.00 0.00 2.78
135 136 6.142817 CCTGTAATGTCTTTCTTTGGTTTCG 58.857 40.000 0.00 0.00 0.00 3.46
136 137 6.238648 CCTGTAATGTCTTTCTTTGGTTTCGT 60.239 38.462 0.00 0.00 0.00 3.85
137 138 7.090953 TGTAATGTCTTTCTTTGGTTTCGTT 57.909 32.000 0.00 0.00 0.00 3.85
138 139 6.970043 TGTAATGTCTTTCTTTGGTTTCGTTG 59.030 34.615 0.00 0.00 0.00 4.10
139 140 5.828299 ATGTCTTTCTTTGGTTTCGTTGA 57.172 34.783 0.00 0.00 0.00 3.18
140 141 5.229921 TGTCTTTCTTTGGTTTCGTTGAG 57.770 39.130 0.00 0.00 0.00 3.02
141 142 4.035684 GTCTTTCTTTGGTTTCGTTGAGC 58.964 43.478 0.00 0.00 0.00 4.26
142 143 3.945285 TCTTTCTTTGGTTTCGTTGAGCT 59.055 39.130 0.00 0.00 0.00 4.09
143 144 3.691049 TTCTTTGGTTTCGTTGAGCTG 57.309 42.857 0.00 0.00 0.00 4.24
144 145 1.333619 TCTTTGGTTTCGTTGAGCTGC 59.666 47.619 0.00 0.00 0.00 5.25
145 146 0.028770 TTTGGTTTCGTTGAGCTGCG 59.971 50.000 0.00 0.00 0.00 5.18
146 147 2.127232 GGTTTCGTTGAGCTGCGC 60.127 61.111 0.00 0.00 0.00 6.09
147 148 2.631428 GTTTCGTTGAGCTGCGCA 59.369 55.556 10.98 10.98 0.00 6.09
148 149 1.207593 GTTTCGTTGAGCTGCGCAT 59.792 52.632 12.24 0.00 0.00 4.73
149 150 0.442310 GTTTCGTTGAGCTGCGCATA 59.558 50.000 12.24 0.00 0.00 3.14
150 151 0.721154 TTTCGTTGAGCTGCGCATAG 59.279 50.000 12.24 0.00 0.00 2.23
151 152 0.108851 TTCGTTGAGCTGCGCATAGA 60.109 50.000 12.24 7.03 0.00 1.98
152 153 0.108851 TCGTTGAGCTGCGCATAGAA 60.109 50.000 12.24 0.00 0.00 2.10
153 154 0.025513 CGTTGAGCTGCGCATAGAAC 59.974 55.000 12.24 10.86 0.00 3.01
154 155 1.363744 GTTGAGCTGCGCATAGAACT 58.636 50.000 12.24 3.34 0.00 3.01
155 156 1.734465 GTTGAGCTGCGCATAGAACTT 59.266 47.619 12.24 0.00 0.00 2.66
156 157 1.645034 TGAGCTGCGCATAGAACTTC 58.355 50.000 12.24 1.81 0.00 3.01
157 158 0.933796 GAGCTGCGCATAGAACTTCC 59.066 55.000 12.24 0.00 0.00 3.46
158 159 0.807667 AGCTGCGCATAGAACTTCCG 60.808 55.000 12.24 0.00 0.00 4.30
159 160 0.806102 GCTGCGCATAGAACTTCCGA 60.806 55.000 12.24 0.00 0.00 4.55
160 161 1.858091 CTGCGCATAGAACTTCCGAT 58.142 50.000 12.24 0.00 0.00 4.18
161 162 1.524355 CTGCGCATAGAACTTCCGATG 59.476 52.381 12.24 0.00 0.00 3.84
162 163 1.136110 TGCGCATAGAACTTCCGATGA 59.864 47.619 5.66 0.00 0.00 2.92
163 164 2.224042 TGCGCATAGAACTTCCGATGAT 60.224 45.455 5.66 0.00 0.00 2.45
164 165 2.410053 GCGCATAGAACTTCCGATGATC 59.590 50.000 0.30 0.00 0.00 2.92
165 166 2.989840 CGCATAGAACTTCCGATGATCC 59.010 50.000 5.74 0.00 0.00 3.36
166 167 3.305676 CGCATAGAACTTCCGATGATCCT 60.306 47.826 5.74 0.00 0.00 3.24
167 168 4.636249 GCATAGAACTTCCGATGATCCTT 58.364 43.478 5.74 0.00 0.00 3.36
168 169 5.059833 GCATAGAACTTCCGATGATCCTTT 58.940 41.667 5.74 0.00 0.00 3.11
169 170 5.049818 GCATAGAACTTCCGATGATCCTTTG 60.050 44.000 5.74 0.00 0.00 2.77
170 171 3.878778 AGAACTTCCGATGATCCTTTGG 58.121 45.455 0.00 0.00 0.00 3.28
171 172 2.044123 ACTTCCGATGATCCTTTGGC 57.956 50.000 0.00 0.00 0.00 4.52
172 173 0.940126 CTTCCGATGATCCTTTGGCG 59.060 55.000 0.00 0.00 0.00 5.69
173 174 1.095228 TTCCGATGATCCTTTGGCGC 61.095 55.000 0.00 0.00 0.00 6.53
174 175 1.524621 CCGATGATCCTTTGGCGCT 60.525 57.895 7.64 0.00 0.00 5.92
175 176 1.645455 CGATGATCCTTTGGCGCTG 59.355 57.895 7.64 0.00 0.00 5.18
176 177 1.779025 CGATGATCCTTTGGCGCTGG 61.779 60.000 7.64 5.11 0.00 4.85
177 178 2.068277 GATGATCCTTTGGCGCTGGC 62.068 60.000 7.64 0.00 38.90 4.85
194 195 3.560251 CCGGATAGGCCTGTGGGG 61.560 72.222 17.99 8.37 38.36 4.96
195 196 2.768344 CGGATAGGCCTGTGGGGT 60.768 66.667 17.99 0.00 37.43 4.95
196 197 2.375345 CGGATAGGCCTGTGGGGTT 61.375 63.158 17.99 0.00 37.43 4.11
197 198 1.227383 GGATAGGCCTGTGGGGTTG 59.773 63.158 17.99 0.00 37.43 3.77
198 199 1.571773 GGATAGGCCTGTGGGGTTGT 61.572 60.000 17.99 0.00 37.43 3.32
199 200 0.394352 GATAGGCCTGTGGGGTTGTG 60.394 60.000 17.99 0.00 37.43 3.33
200 201 1.140134 ATAGGCCTGTGGGGTTGTGT 61.140 55.000 17.99 0.00 37.43 3.72
201 202 1.357272 TAGGCCTGTGGGGTTGTGTT 61.357 55.000 17.99 0.00 37.43 3.32
202 203 1.151908 GGCCTGTGGGGTTGTGTTA 59.848 57.895 0.00 0.00 37.43 2.41
203 204 0.251608 GGCCTGTGGGGTTGTGTTAT 60.252 55.000 0.00 0.00 37.43 1.89
204 205 0.887933 GCCTGTGGGGTTGTGTTATG 59.112 55.000 0.00 0.00 37.43 1.90
205 206 1.546773 GCCTGTGGGGTTGTGTTATGA 60.547 52.381 0.00 0.00 37.43 2.15
206 207 2.159382 CCTGTGGGGTTGTGTTATGAC 58.841 52.381 0.00 0.00 0.00 3.06
207 208 2.224769 CCTGTGGGGTTGTGTTATGACT 60.225 50.000 0.00 0.00 0.00 3.41
208 209 3.486383 CTGTGGGGTTGTGTTATGACTT 58.514 45.455 0.00 0.00 0.00 3.01
209 210 3.218453 TGTGGGGTTGTGTTATGACTTG 58.782 45.455 0.00 0.00 0.00 3.16
210 211 3.219281 GTGGGGTTGTGTTATGACTTGT 58.781 45.455 0.00 0.00 0.00 3.16
211 212 3.634910 GTGGGGTTGTGTTATGACTTGTT 59.365 43.478 0.00 0.00 0.00 2.83
212 213 4.098807 GTGGGGTTGTGTTATGACTTGTTT 59.901 41.667 0.00 0.00 0.00 2.83
213 214 4.339814 TGGGGTTGTGTTATGACTTGTTTC 59.660 41.667 0.00 0.00 0.00 2.78
214 215 4.339814 GGGGTTGTGTTATGACTTGTTTCA 59.660 41.667 0.00 0.00 0.00 2.69
215 216 5.278604 GGGTTGTGTTATGACTTGTTTCAC 58.721 41.667 0.00 0.00 0.00 3.18
216 217 4.967575 GGTTGTGTTATGACTTGTTTCACG 59.032 41.667 0.00 0.00 0.00 4.35
217 218 4.203950 TGTGTTATGACTTGTTTCACGC 57.796 40.909 0.00 0.00 0.00 5.34
218 219 3.874543 TGTGTTATGACTTGTTTCACGCT 59.125 39.130 0.00 0.00 0.00 5.07
219 220 4.211389 GTGTTATGACTTGTTTCACGCTG 58.789 43.478 0.00 0.00 0.00 5.18
220 221 3.874543 TGTTATGACTTGTTTCACGCTGT 59.125 39.130 0.00 0.00 0.00 4.40
221 222 4.025229 TGTTATGACTTGTTTCACGCTGTC 60.025 41.667 0.00 0.00 0.00 3.51
222 223 0.927537 TGACTTGTTTCACGCTGTCG 59.072 50.000 0.00 0.00 42.43 4.35
232 233 3.022287 CGCTGTCGTTGTGGCTTT 58.978 55.556 0.00 0.00 0.00 3.51
233 234 2.230892 CGCTGTCGTTGTGGCTTTA 58.769 52.632 0.00 0.00 0.00 1.85
234 235 0.796312 CGCTGTCGTTGTGGCTTTAT 59.204 50.000 0.00 0.00 0.00 1.40
235 236 1.196808 CGCTGTCGTTGTGGCTTTATT 59.803 47.619 0.00 0.00 0.00 1.40
236 237 2.413796 CGCTGTCGTTGTGGCTTTATTA 59.586 45.455 0.00 0.00 0.00 0.98
237 238 3.120477 CGCTGTCGTTGTGGCTTTATTAA 60.120 43.478 0.00 0.00 0.00 1.40
238 239 4.436852 CGCTGTCGTTGTGGCTTTATTAAT 60.437 41.667 0.00 0.00 0.00 1.40
239 240 5.399013 GCTGTCGTTGTGGCTTTATTAATT 58.601 37.500 0.00 0.00 0.00 1.40
240 241 5.861787 GCTGTCGTTGTGGCTTTATTAATTT 59.138 36.000 0.00 0.00 0.00 1.82
241 242 7.024768 GCTGTCGTTGTGGCTTTATTAATTTA 58.975 34.615 0.00 0.00 0.00 1.40
242 243 7.539366 GCTGTCGTTGTGGCTTTATTAATTTAA 59.461 33.333 0.00 0.00 0.00 1.52
243 244 9.400638 CTGTCGTTGTGGCTTTATTAATTTAAA 57.599 29.630 0.00 0.00 0.00 1.52
244 245 9.400638 TGTCGTTGTGGCTTTATTAATTTAAAG 57.599 29.630 6.41 6.41 40.56 1.85
252 253 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
253 254 2.810028 TTAATTTAAAGCCGGACGCG 57.190 45.000 5.05 3.53 44.76 6.01
254 255 1.724429 TAATTTAAAGCCGGACGCGT 58.276 45.000 13.85 13.85 44.76 6.01
255 256 0.445043 AATTTAAAGCCGGACGCGTC 59.555 50.000 30.67 30.67 44.76 5.19
256 257 1.363885 ATTTAAAGCCGGACGCGTCC 61.364 55.000 41.75 41.75 46.18 4.79
269 270 2.728383 CGTCCGTGCGTCTTCGTT 60.728 61.111 0.00 0.00 39.49 3.85
270 271 2.704193 CGTCCGTGCGTCTTCGTTC 61.704 63.158 0.00 0.00 39.49 3.95
271 272 1.371389 GTCCGTGCGTCTTCGTTCT 60.371 57.895 0.00 0.00 39.49 3.01
272 273 0.110056 GTCCGTGCGTCTTCGTTCTA 60.110 55.000 0.00 0.00 39.49 2.10
273 274 0.592637 TCCGTGCGTCTTCGTTCTAA 59.407 50.000 0.00 0.00 39.49 2.10
274 275 1.001487 TCCGTGCGTCTTCGTTCTAAA 60.001 47.619 0.00 0.00 39.49 1.85
275 276 1.788308 CCGTGCGTCTTCGTTCTAAAA 59.212 47.619 0.00 0.00 39.49 1.52
276 277 2.219216 CCGTGCGTCTTCGTTCTAAAAA 59.781 45.455 0.00 0.00 39.49 1.94
302 303 4.415881 ACAATATATCGTTCTGTGCCCA 57.584 40.909 0.00 0.00 0.00 5.36
348 350 4.338379 AATACGAGAAATGGGTAGCTCC 57.662 45.455 0.00 0.00 0.00 4.70
429 433 3.200385 ACTTGTGTGTGGGTAGGTTGTAA 59.800 43.478 0.00 0.00 0.00 2.41
430 434 4.141344 ACTTGTGTGTGGGTAGGTTGTAAT 60.141 41.667 0.00 0.00 0.00 1.89
457 461 3.980646 TCCATGTTTTTCGTTGTCTGG 57.019 42.857 0.00 0.00 0.00 3.86
459 463 2.393764 CATGTTTTTCGTTGTCTGGGC 58.606 47.619 0.00 0.00 0.00 5.36
493 498 1.459450 GCGAGCTTCCCCAATGTTAA 58.541 50.000 0.00 0.00 0.00 2.01
499 504 2.492088 GCTTCCCCAATGTTAACCACTC 59.508 50.000 2.48 0.00 0.00 3.51
536 541 1.566018 CTGTTTTCACGTCGGAGCCC 61.566 60.000 0.00 0.00 0.00 5.19
539 544 2.035237 TTTTCACGTCGGAGCCCTGT 62.035 55.000 0.00 0.00 0.00 4.00
597 602 6.984474 TCGTATGATCCTCCAATTGTCTAAAC 59.016 38.462 4.43 0.00 0.00 2.01
677 682 4.644685 TGAACCCCTTTTGACTCTTCTTTG 59.355 41.667 0.00 0.00 0.00 2.77
689 694 5.763204 TGACTCTTCTTTGGTTAATGTGGTC 59.237 40.000 0.00 0.00 0.00 4.02
938 943 2.692709 TTTCTTGCCCCCATTTCTGA 57.307 45.000 0.00 0.00 0.00 3.27
1235 1240 4.353437 GCCACCTCCGTCGTCGTT 62.353 66.667 0.71 0.00 35.01 3.85
1397 1402 5.895534 AGGTGCATGATTTCTGATTTGGTAT 59.104 36.000 0.00 0.00 0.00 2.73
1398 1403 7.062322 AGGTGCATGATTTCTGATTTGGTATA 58.938 34.615 0.00 0.00 0.00 1.47
1399 1404 7.727186 AGGTGCATGATTTCTGATTTGGTATAT 59.273 33.333 0.00 0.00 0.00 0.86
1400 1405 9.013229 GGTGCATGATTTCTGATTTGGTATATA 57.987 33.333 0.00 0.00 0.00 0.86
1516 1521 4.261031 GCTAACAACACCAACGTTTCATCT 60.261 41.667 0.00 0.00 0.00 2.90
1529 1534 3.736126 CGTTTCATCTACCTACCCGTTCC 60.736 52.174 0.00 0.00 0.00 3.62
1594 1599 2.508526 AGTTCTTCACCAAGTGCATCC 58.491 47.619 0.00 0.00 32.98 3.51
1644 1654 2.756207 ACACTTACCAAAACGTTGCCTT 59.244 40.909 0.00 0.00 33.01 4.35
1645 1655 3.193903 ACACTTACCAAAACGTTGCCTTT 59.806 39.130 0.00 0.00 33.01 3.11
1681 1691 7.025963 CGGTAGGTAGGTTAATTAAGATAGCG 58.974 42.308 0.00 3.99 0.00 4.26
1706 1716 6.514048 GCCCTAGATTAAAGATGCATGTTCAC 60.514 42.308 9.83 2.46 0.00 3.18
1752 1763 5.683876 ACACATAATACACTGCTTCCTCT 57.316 39.130 0.00 0.00 0.00 3.69
1783 1794 5.991606 TCACAAAGAGCCATGCTATACATAC 59.008 40.000 0.00 0.00 39.88 2.39
1795 1806 7.600375 CCATGCTATACATACGATCTTTTCTGT 59.400 37.037 0.00 0.00 36.64 3.41
1805 1816 9.199184 CATACGATCTTTTCTGTACAATTTTCG 57.801 33.333 0.00 2.75 0.00 3.46
1807 1818 7.069569 ACGATCTTTTCTGTACAATTTTCGTG 58.930 34.615 0.00 0.00 34.13 4.35
1810 1821 4.797693 TTTCTGTACAATTTTCGTGCGA 57.202 36.364 0.00 0.00 0.00 5.10
1811 1822 3.781341 TCTGTACAATTTTCGTGCGAC 57.219 42.857 0.00 0.00 0.00 5.19
1829 1840 2.289274 CGACGCTACTCATCATCAGACT 59.711 50.000 0.00 0.00 0.00 3.24
1841 1852 5.989777 TCATCATCAGACTATTCACATGCTG 59.010 40.000 0.00 0.00 0.00 4.41
1885 1896 3.358775 CGATTTTGTGTCGTGCTTGAAA 58.641 40.909 0.00 0.00 34.56 2.69
1887 1898 3.840890 TTTTGTGTCGTGCTTGAAACT 57.159 38.095 1.64 0.00 0.00 2.66
1896 1907 4.383649 GTCGTGCTTGAAACTTATCGTACA 59.616 41.667 0.00 0.00 0.00 2.90
1907 1918 7.385478 TGAAACTTATCGTACATGCAGTTGTTA 59.615 33.333 0.00 0.00 0.00 2.41
1913 1924 6.822073 TCGTACATGCAGTTGTTATGTATC 57.178 37.500 0.00 7.33 38.92 2.24
1946 1957 4.578516 AGTTTGGTTTGATCATCGACACAA 59.421 37.500 0.00 1.25 0.00 3.33
1951 1962 4.631377 GGTTTGATCATCGACACAATCTCA 59.369 41.667 0.00 0.00 0.00 3.27
2006 2040 6.047870 CACTAAGAAATCCTGAGATGAGTGG 58.952 44.000 0.00 0.00 31.29 4.00
2008 2042 4.751767 AGAAATCCTGAGATGAGTGGAC 57.248 45.455 0.00 0.00 31.29 4.02
2028 2063 3.871594 GACGGCTGCTGTTATTAACATCT 59.128 43.478 16.36 0.00 41.26 2.90
2032 2067 6.645415 ACGGCTGCTGTTATTAACATCTATAC 59.355 38.462 8.62 0.06 41.26 1.47
2034 2069 7.148738 CGGCTGCTGTTATTAACATCTATACAG 60.149 40.741 9.59 10.78 41.26 2.74
2066 2105 6.908870 TGTACCAGATTCATCGAAATCTTG 57.091 37.500 9.20 8.88 42.05 3.02
2068 2107 5.808042 ACCAGATTCATCGAAATCTTGTG 57.192 39.130 13.10 7.21 42.05 3.33
2069 2108 4.637534 ACCAGATTCATCGAAATCTTGTGG 59.362 41.667 13.10 12.51 42.05 4.17
2080 2119 4.761739 CGAAATCTTGTGGGGTATATGCAT 59.238 41.667 3.79 3.79 0.00 3.96
2109 2148 9.753674 TTACTGAACTGGGAATTAAATTCATCT 57.246 29.630 0.00 0.00 41.03 2.90
2195 2237 4.443621 TCGGTTAATCATTGTTATCGCCA 58.556 39.130 0.00 0.00 0.00 5.69
2198 2240 6.876789 TCGGTTAATCATTGTTATCGCCATAT 59.123 34.615 0.00 0.00 0.00 1.78
2218 2260 6.322201 CCATATTCCATGGCCATAGGTTAATC 59.678 42.308 20.30 0.00 31.75 1.75
2219 2264 3.417069 TCCATGGCCATAGGTTAATCG 57.583 47.619 20.30 2.03 0.00 3.34
2234 2280 6.852664 AGGTTAATCGTTGTCCATCATTTTC 58.147 36.000 0.00 0.00 0.00 2.29
2654 2701 6.324512 CCTATAATGGATGGAGATCAGGAGAG 59.675 46.154 0.00 0.00 0.00 3.20
2672 2719 4.350346 GAGAGATGAGATATGGCGAATCG 58.650 47.826 0.00 0.00 0.00 3.34
2689 2736 2.401766 CGCCAACTGCTCCCATCAC 61.402 63.158 0.00 0.00 38.05 3.06
2706 2753 7.719424 TCCCATCACCAGGTATCTATTAGTAT 58.281 38.462 0.00 0.00 0.00 2.12
2815 2862 3.953712 TTAACCTTCAGATCAGCGTCA 57.046 42.857 0.00 0.00 0.00 4.35
2821 2868 5.431765 ACCTTCAGATCAGCGTCAAATTAT 58.568 37.500 0.00 0.00 0.00 1.28
2893 2940 0.039074 ACACGTTGCCTCTCTTCGAG 60.039 55.000 0.00 0.00 39.57 4.04
2938 2985 7.148573 GCAGAAGTGTATTTATACGATCATGGG 60.149 40.741 0.00 0.00 36.06 4.00
3039 3109 7.326454 AGATATACACACATGCATGAGATACC 58.674 38.462 32.75 10.17 0.00 2.73
3051 3121 4.397417 GCATGAGATACCTTTTGTTGCTCT 59.603 41.667 0.00 0.00 31.13 4.09
3052 3122 5.675575 GCATGAGATACCTTTTGTTGCTCTG 60.676 44.000 0.00 0.00 31.13 3.35
3092 3162 8.739039 TCTAATTTCACAAATATTCACCTGGTG 58.261 33.333 20.86 20.86 34.45 4.17
3108 3179 3.807071 CCTGGTGGTTTTTGGAAAAATCG 59.193 43.478 0.84 0.00 40.89 3.34
3113 3184 7.723324 TGGTGGTTTTTGGAAAAATCGTATAA 58.277 30.769 0.84 0.00 40.89 0.98
3253 3324 2.286365 TTTTCGAGATTGCTTGGGGT 57.714 45.000 0.00 0.00 0.00 4.95
3255 3326 1.533625 TTCGAGATTGCTTGGGGTTG 58.466 50.000 0.00 0.00 0.00 3.77
3256 3327 0.322456 TCGAGATTGCTTGGGGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
3257 3328 1.315257 CGAGATTGCTTGGGGTTGGG 61.315 60.000 0.00 0.00 0.00 4.12
3258 3329 0.972471 GAGATTGCTTGGGGTTGGGG 60.972 60.000 0.00 0.00 0.00 4.96
3259 3330 1.989508 GATTGCTTGGGGTTGGGGG 60.990 63.158 0.00 0.00 0.00 5.40
3260 3331 2.746947 GATTGCTTGGGGTTGGGGGT 62.747 60.000 0.00 0.00 0.00 4.95
3261 3332 3.765257 TTGCTTGGGGTTGGGGGTG 62.765 63.158 0.00 0.00 0.00 4.61
3263 3334 4.315264 CTTGGGGTTGGGGGTGGG 62.315 72.222 0.00 0.00 0.00 4.61
3315 4020 3.696281 TGCTTTCAAGATGTGTGTGTG 57.304 42.857 0.00 0.00 0.00 3.82
3316 4021 3.016031 TGCTTTCAAGATGTGTGTGTGT 58.984 40.909 0.00 0.00 0.00 3.72
3386 4113 4.534647 TGGTTGACATATGGGGCTTAAT 57.465 40.909 7.80 0.00 0.00 1.40
3414 4142 5.530712 TCTTGTGCAATTGTAGTACACGTA 58.469 37.500 7.40 0.00 33.96 3.57
3454 4182 6.446781 AGTATTTCTTGAGATGCAACATGG 57.553 37.500 0.00 0.00 31.96 3.66
3475 4203 3.149196 GCTTGTCCAGTTTCCTTCATCA 58.851 45.455 0.00 0.00 0.00 3.07
3484 4212 8.133627 GTCCAGTTTCCTTCATCATCAATAATG 58.866 37.037 0.00 0.00 36.65 1.90
3614 4350 6.675413 TTACTGACATGGTACTACAAACCT 57.325 37.500 0.00 0.00 37.91 3.50
3667 4406 2.882927 ATGGTGCAATGTGATGATGC 57.117 45.000 0.00 0.00 40.45 3.91
3681 4420 1.838112 TGATGCCCTTAAAGCCAGTG 58.162 50.000 0.00 0.00 0.00 3.66
3700 4439 3.765511 AGTGCAACAATGTGCCATCTTAT 59.234 39.130 0.00 0.00 44.26 1.73
3701 4440 4.221262 AGTGCAACAATGTGCCATCTTATT 59.779 37.500 0.00 0.00 44.26 1.40
3702 4441 4.931002 GTGCAACAATGTGCCATCTTATTT 59.069 37.500 0.00 0.00 44.26 1.40
3703 4442 5.409214 GTGCAACAATGTGCCATCTTATTTT 59.591 36.000 0.00 0.00 44.26 1.82
3704 4443 5.996513 TGCAACAATGTGCCATCTTATTTTT 59.003 32.000 5.61 0.00 44.26 1.94
3705 4444 6.073167 TGCAACAATGTGCCATCTTATTTTTG 60.073 34.615 5.61 0.00 44.26 2.44
3706 4445 6.308675 CAACAATGTGCCATCTTATTTTTGC 58.691 36.000 0.00 0.00 0.00 3.68
3707 4446 5.549347 ACAATGTGCCATCTTATTTTTGCA 58.451 33.333 0.00 0.00 0.00 4.08
3708 4447 5.996513 ACAATGTGCCATCTTATTTTTGCAA 59.003 32.000 0.00 0.00 0.00 4.08
3709 4448 6.485984 ACAATGTGCCATCTTATTTTTGCAAA 59.514 30.769 8.05 8.05 0.00 3.68
3710 4449 5.921004 TGTGCCATCTTATTTTTGCAAAC 57.079 34.783 12.39 0.00 0.00 2.93
3711 4450 5.363101 TGTGCCATCTTATTTTTGCAAACA 58.637 33.333 12.39 5.81 0.00 2.83
3712 4451 5.236047 TGTGCCATCTTATTTTTGCAAACAC 59.764 36.000 12.39 12.53 0.00 3.32
3713 4452 5.236047 GTGCCATCTTATTTTTGCAAACACA 59.764 36.000 12.39 0.00 0.00 3.72
3714 4453 5.996513 TGCCATCTTATTTTTGCAAACACAT 59.003 32.000 12.39 7.12 0.00 3.21
3745 4484 8.873215 ATTGTAGAGTTTACTCCGATACAATG 57.127 34.615 22.21 0.00 43.05 2.82
3762 4502 9.507280 CGATACAATGAAATTTACATTTGCTCT 57.493 29.630 11.01 0.40 36.07 4.09
3925 4667 3.332187 TGATCCCACCTGGTTAAACATGA 59.668 43.478 0.00 0.00 34.77 3.07
3926 4668 4.017591 TGATCCCACCTGGTTAAACATGAT 60.018 41.667 0.00 0.00 34.77 2.45
3927 4669 3.696045 TCCCACCTGGTTAAACATGATG 58.304 45.455 0.00 0.00 34.77 3.07
4064 4821 8.056571 GCTAGTTAATTTGTACAGACATAAGCG 58.943 37.037 0.00 0.00 34.86 4.68
4070 4827 4.649088 TGTACAGACATAAGCGCACTAT 57.351 40.909 11.47 2.75 0.00 2.12
4095 4852 9.772605 ATGGCCATGGATTTCAGAATATATAAA 57.227 29.630 20.04 0.00 0.00 1.40
4096 4853 9.772605 TGGCCATGGATTTCAGAATATATAAAT 57.227 29.630 18.40 0.00 0.00 1.40
4116 4904 0.716108 GTTTCTGACGCACTGATCCG 59.284 55.000 0.00 0.00 0.00 4.18
4147 4935 5.414789 TTGCACCTAGCTTCTGTTGTATA 57.585 39.130 0.00 0.00 45.94 1.47
4179 4967 4.994907 ACGTATATTCTGGTGCAGTACA 57.005 40.909 0.00 0.00 32.61 2.90
4187 4975 2.485122 GTGCAGTACATTGGGCGC 59.515 61.111 0.00 0.00 0.00 6.53
4199 4987 3.202706 GGGCGCCGATTGTTCTCC 61.203 66.667 22.54 0.00 0.00 3.71
4231 5020 5.801531 TGCTGGTGGTCTTAATATCGTAT 57.198 39.130 0.00 0.00 0.00 3.06
4232 5021 6.904463 TGCTGGTGGTCTTAATATCGTATA 57.096 37.500 0.00 0.00 0.00 1.47
4233 5022 7.476540 TGCTGGTGGTCTTAATATCGTATAT 57.523 36.000 0.00 0.00 0.00 0.86
4234 5023 8.584063 TGCTGGTGGTCTTAATATCGTATATA 57.416 34.615 0.00 0.00 0.00 0.86
4317 5138 6.932356 AGGAAGCACTTTACATGTATGATG 57.068 37.500 6.36 6.42 0.00 3.07
4353 5526 5.533533 TTTTGATGAATAACCGTACGTGG 57.466 39.130 15.21 1.90 0.00 4.94
4354 5527 3.872511 TGATGAATAACCGTACGTGGT 57.127 42.857 15.21 7.02 46.67 4.16
4355 5528 4.979943 TGATGAATAACCGTACGTGGTA 57.020 40.909 15.21 9.12 42.89 3.25
4356 5529 5.518848 TGATGAATAACCGTACGTGGTAT 57.481 39.130 15.21 11.04 42.89 2.73
4357 5530 6.631971 TGATGAATAACCGTACGTGGTATA 57.368 37.500 15.21 1.27 42.89 1.47
4358 5531 6.437928 TGATGAATAACCGTACGTGGTATAC 58.562 40.000 15.21 0.00 42.89 1.47
4410 5583 9.461312 TCATTGTTTTTGATATAGCTTACCACT 57.539 29.630 0.00 0.00 0.00 4.00
4411 5584 9.722056 CATTGTTTTTGATATAGCTTACCACTC 57.278 33.333 0.00 0.00 0.00 3.51
4412 5585 8.856153 TTGTTTTTGATATAGCTTACCACTCA 57.144 30.769 0.00 0.00 0.00 3.41
4413 5586 9.461312 TTGTTTTTGATATAGCTTACCACTCAT 57.539 29.630 0.00 0.00 0.00 2.90
4414 5587 8.892723 TGTTTTTGATATAGCTTACCACTCATG 58.107 33.333 0.00 0.00 0.00 3.07
4415 5588 7.496529 TTTTGATATAGCTTACCACTCATGC 57.503 36.000 0.00 0.00 0.00 4.06
4416 5589 5.152623 TGATATAGCTTACCACTCATGCC 57.847 43.478 0.00 0.00 0.00 4.40
4417 5590 4.592778 TGATATAGCTTACCACTCATGCCA 59.407 41.667 0.00 0.00 0.00 4.92
4418 5591 3.931907 ATAGCTTACCACTCATGCCAA 57.068 42.857 0.00 0.00 0.00 4.52
4419 5592 2.119801 AGCTTACCACTCATGCCAAG 57.880 50.000 0.00 0.00 0.00 3.61
4420 5593 1.352352 AGCTTACCACTCATGCCAAGT 59.648 47.619 0.00 0.00 0.00 3.16
4421 5594 1.470098 GCTTACCACTCATGCCAAGTG 59.530 52.381 6.14 6.14 43.04 3.16
4429 5602 4.707105 CACTCATGCCAAGTGGTATATGA 58.293 43.478 0.17 7.11 38.51 2.15
4430 5603 5.311265 CACTCATGCCAAGTGGTATATGAT 58.689 41.667 0.17 0.00 38.51 2.45
4431 5604 6.466812 CACTCATGCCAAGTGGTATATGATA 58.533 40.000 0.17 0.00 38.51 2.15
4432 5605 7.108194 CACTCATGCCAAGTGGTATATGATAT 58.892 38.462 0.17 0.00 38.51 1.63
4433 5606 7.609146 CACTCATGCCAAGTGGTATATGATATT 59.391 37.037 0.17 0.00 38.51 1.28
4434 5607 8.825774 ACTCATGCCAAGTGGTATATGATATTA 58.174 33.333 0.17 0.00 38.51 0.98
4435 5608 9.842775 CTCATGCCAAGTGGTATATGATATTAT 57.157 33.333 0.17 0.00 38.51 1.28
4476 5650 4.262121 GCCCATTGCATGCATGAACTTATA 60.262 41.667 30.64 4.45 40.77 0.98
4477 5651 5.224888 CCCATTGCATGCATGAACTTATAC 58.775 41.667 30.64 10.13 0.00 1.47
4479 5653 5.688621 CCATTGCATGCATGAACTTATACAC 59.311 40.000 30.64 8.66 0.00 2.90
4482 5656 6.264841 TGCATGCATGAACTTATACACAAA 57.735 33.333 30.64 0.00 0.00 2.83
4507 5689 5.964168 CGTACGAGAACTAATGTACTTCCTG 59.036 44.000 10.44 0.00 36.04 3.86
4512 5694 7.040201 ACGAGAACTAATGTACTTCCTGTGTTA 60.040 37.037 0.00 0.00 0.00 2.41
4685 5871 6.421202 GCTAAATCATTGACCTAGAACTACGG 59.579 42.308 7.66 0.00 0.00 4.02
4686 5872 3.795623 TCATTGACCTAGAACTACGGC 57.204 47.619 0.00 0.00 0.00 5.68
4691 5878 1.136305 GACCTAGAACTACGGCATGCA 59.864 52.381 21.36 0.00 0.00 3.96
4735 5923 1.070604 ATAGCACTCATGGGATGGGG 58.929 55.000 0.00 0.00 34.16 4.96
4736 5924 1.061905 TAGCACTCATGGGATGGGGG 61.062 60.000 0.00 0.00 37.17 5.40
4828 6029 0.959553 CCCCATCATGCTGAGATTGC 59.040 55.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.847999 CTTGCAGCAAACGTTGTTGAG 59.152 47.619 9.65 0.00 43.54 3.02
1 2 1.201181 ACTTGCAGCAAACGTTGTTGA 59.799 42.857 9.65 0.00 43.54 3.18
2 3 1.583404 GACTTGCAGCAAACGTTGTTG 59.417 47.619 9.65 5.92 43.66 3.33
3 4 1.472480 AGACTTGCAGCAAACGTTGTT 59.528 42.857 9.65 0.00 0.00 2.83
4 5 1.094785 AGACTTGCAGCAAACGTTGT 58.905 45.000 9.65 2.77 0.00 3.32
5 6 3.228749 CATAGACTTGCAGCAAACGTTG 58.771 45.455 9.65 0.00 0.00 4.10
6 7 2.878406 ACATAGACTTGCAGCAAACGTT 59.122 40.909 9.65 0.00 0.00 3.99
7 8 2.224079 CACATAGACTTGCAGCAAACGT 59.776 45.455 9.65 4.37 0.00 3.99
8 9 2.480037 TCACATAGACTTGCAGCAAACG 59.520 45.455 9.65 0.68 0.00 3.60
9 10 4.409570 CATCACATAGACTTGCAGCAAAC 58.590 43.478 9.65 6.58 0.00 2.93
10 11 3.441222 CCATCACATAGACTTGCAGCAAA 59.559 43.478 9.65 0.00 0.00 3.68
11 12 3.011818 CCATCACATAGACTTGCAGCAA 58.988 45.455 7.81 7.81 0.00 3.91
12 13 2.635714 CCATCACATAGACTTGCAGCA 58.364 47.619 0.00 0.00 0.00 4.41
13 14 1.332997 GCCATCACATAGACTTGCAGC 59.667 52.381 0.00 0.00 0.00 5.25
14 15 2.915349 AGCCATCACATAGACTTGCAG 58.085 47.619 0.00 0.00 0.00 4.41
15 16 3.181462 CCTAGCCATCACATAGACTTGCA 60.181 47.826 0.00 0.00 0.00 4.08
16 17 3.397482 CCTAGCCATCACATAGACTTGC 58.603 50.000 0.00 0.00 0.00 4.01
17 18 3.643320 TCCCTAGCCATCACATAGACTTG 59.357 47.826 0.00 0.00 0.00 3.16
18 19 3.900601 CTCCCTAGCCATCACATAGACTT 59.099 47.826 0.00 0.00 0.00 3.01
19 20 3.505386 CTCCCTAGCCATCACATAGACT 58.495 50.000 0.00 0.00 0.00 3.24
20 21 2.028567 GCTCCCTAGCCATCACATAGAC 60.029 54.545 0.00 0.00 43.40 2.59
21 22 2.251818 GCTCCCTAGCCATCACATAGA 58.748 52.381 0.00 0.00 43.40 1.98
22 23 2.758736 GCTCCCTAGCCATCACATAG 57.241 55.000 0.00 0.00 43.40 2.23
33 34 2.366916 CACCATAGTCAAGGCTCCCTAG 59.633 54.545 0.00 0.00 31.13 3.02
34 35 2.023404 TCACCATAGTCAAGGCTCCCTA 60.023 50.000 0.00 0.00 31.13 3.53
35 36 1.207791 CACCATAGTCAAGGCTCCCT 58.792 55.000 0.00 0.00 33.87 4.20
36 37 1.204146 TCACCATAGTCAAGGCTCCC 58.796 55.000 0.00 0.00 0.00 4.30
37 38 2.171448 ACATCACCATAGTCAAGGCTCC 59.829 50.000 0.00 0.00 0.00 4.70
38 39 3.462021 GACATCACCATAGTCAAGGCTC 58.538 50.000 0.00 0.00 32.68 4.70
39 40 2.171448 GGACATCACCATAGTCAAGGCT 59.829 50.000 0.00 0.00 34.04 4.58
40 41 2.092968 TGGACATCACCATAGTCAAGGC 60.093 50.000 0.00 0.00 34.77 4.35
41 42 3.912496 TGGACATCACCATAGTCAAGG 57.088 47.619 0.00 0.00 34.77 3.61
50 51 0.549902 AGGGACCATGGACATCACCA 60.550 55.000 21.47 0.00 44.41 4.17
51 52 0.625849 AAGGGACCATGGACATCACC 59.374 55.000 21.47 8.96 0.00 4.02
52 53 2.493278 CAAAAGGGACCATGGACATCAC 59.507 50.000 21.47 6.90 0.00 3.06
53 54 2.109834 ACAAAAGGGACCATGGACATCA 59.890 45.455 21.47 0.00 0.00 3.07
54 55 2.807676 ACAAAAGGGACCATGGACATC 58.192 47.619 21.47 5.38 0.00 3.06
55 56 2.899256 CAACAAAAGGGACCATGGACAT 59.101 45.455 21.47 5.55 0.00 3.06
56 57 2.315176 CAACAAAAGGGACCATGGACA 58.685 47.619 21.47 0.00 0.00 4.02
57 58 1.000843 GCAACAAAAGGGACCATGGAC 59.999 52.381 21.47 13.12 0.00 4.02
58 59 1.133199 AGCAACAAAAGGGACCATGGA 60.133 47.619 21.47 0.00 0.00 3.41
59 60 1.341080 AGCAACAAAAGGGACCATGG 58.659 50.000 11.19 11.19 0.00 3.66
60 61 2.364970 TCAAGCAACAAAAGGGACCATG 59.635 45.455 0.00 0.00 0.00 3.66
61 62 2.365293 GTCAAGCAACAAAAGGGACCAT 59.635 45.455 0.00 0.00 0.00 3.55
62 63 1.754226 GTCAAGCAACAAAAGGGACCA 59.246 47.619 0.00 0.00 0.00 4.02
63 64 1.269051 CGTCAAGCAACAAAAGGGACC 60.269 52.381 0.00 0.00 0.00 4.46
64 65 1.673920 TCGTCAAGCAACAAAAGGGAC 59.326 47.619 0.00 0.00 0.00 4.46
65 66 1.946768 CTCGTCAAGCAACAAAAGGGA 59.053 47.619 0.00 0.00 0.00 4.20
66 67 2.405892 CTCGTCAAGCAACAAAAGGG 57.594 50.000 0.00 0.00 0.00 3.95
77 78 3.782244 GCACGCAGGCTCGTCAAG 61.782 66.667 8.65 1.45 41.21 3.02
78 79 4.299547 AGCACGCAGGCTCGTCAA 62.300 61.111 8.65 0.00 41.05 3.18
85 86 3.181967 CGTACAGAGCACGCAGGC 61.182 66.667 0.00 0.00 31.94 4.85
86 87 2.507102 CCGTACAGAGCACGCAGG 60.507 66.667 0.00 0.00 38.07 4.85
87 88 2.507102 CCCGTACAGAGCACGCAG 60.507 66.667 0.00 0.00 38.07 5.18
88 89 4.735132 GCCCGTACAGAGCACGCA 62.735 66.667 0.00 0.00 38.07 5.24
89 90 2.351336 ATAGCCCGTACAGAGCACGC 62.351 60.000 0.00 0.00 38.07 5.34
90 91 0.595053 CATAGCCCGTACAGAGCACG 60.595 60.000 0.00 0.00 39.10 5.34
91 92 0.876342 GCATAGCCCGTACAGAGCAC 60.876 60.000 0.00 0.00 0.00 4.40
92 93 1.441729 GCATAGCCCGTACAGAGCA 59.558 57.895 0.00 0.00 0.00 4.26
93 94 1.301009 GGCATAGCCCGTACAGAGC 60.301 63.158 0.00 0.00 44.06 4.09
104 105 4.455606 AGAAAGACATTACAGGGCATAGC 58.544 43.478 0.00 0.00 0.00 2.97
105 106 6.183360 CCAAAGAAAGACATTACAGGGCATAG 60.183 42.308 0.00 0.00 0.00 2.23
106 107 5.652014 CCAAAGAAAGACATTACAGGGCATA 59.348 40.000 0.00 0.00 0.00 3.14
107 108 4.463891 CCAAAGAAAGACATTACAGGGCAT 59.536 41.667 0.00 0.00 0.00 4.40
108 109 3.826157 CCAAAGAAAGACATTACAGGGCA 59.174 43.478 0.00 0.00 0.00 5.36
109 110 3.826729 ACCAAAGAAAGACATTACAGGGC 59.173 43.478 0.00 0.00 0.00 5.19
110 111 6.405278 AAACCAAAGAAAGACATTACAGGG 57.595 37.500 0.00 0.00 0.00 4.45
111 112 6.142817 CGAAACCAAAGAAAGACATTACAGG 58.857 40.000 0.00 0.00 0.00 4.00
112 113 6.725246 ACGAAACCAAAGAAAGACATTACAG 58.275 36.000 0.00 0.00 0.00 2.74
113 114 6.687081 ACGAAACCAAAGAAAGACATTACA 57.313 33.333 0.00 0.00 0.00 2.41
114 115 7.190871 TCAACGAAACCAAAGAAAGACATTAC 58.809 34.615 0.00 0.00 0.00 1.89
115 116 7.323049 TCAACGAAACCAAAGAAAGACATTA 57.677 32.000 0.00 0.00 0.00 1.90
116 117 6.202516 TCAACGAAACCAAAGAAAGACATT 57.797 33.333 0.00 0.00 0.00 2.71
117 118 5.733373 GCTCAACGAAACCAAAGAAAGACAT 60.733 40.000 0.00 0.00 0.00 3.06
118 119 4.438200 GCTCAACGAAACCAAAGAAAGACA 60.438 41.667 0.00 0.00 0.00 3.41
119 120 4.035684 GCTCAACGAAACCAAAGAAAGAC 58.964 43.478 0.00 0.00 0.00 3.01
120 121 3.945285 AGCTCAACGAAACCAAAGAAAGA 59.055 39.130 0.00 0.00 0.00 2.52
121 122 4.037690 CAGCTCAACGAAACCAAAGAAAG 58.962 43.478 0.00 0.00 0.00 2.62
122 123 3.733684 GCAGCTCAACGAAACCAAAGAAA 60.734 43.478 0.00 0.00 0.00 2.52
123 124 2.223479 GCAGCTCAACGAAACCAAAGAA 60.223 45.455 0.00 0.00 0.00 2.52
124 125 1.333619 GCAGCTCAACGAAACCAAAGA 59.666 47.619 0.00 0.00 0.00 2.52
125 126 1.758783 GCAGCTCAACGAAACCAAAG 58.241 50.000 0.00 0.00 0.00 2.77
126 127 0.028770 CGCAGCTCAACGAAACCAAA 59.971 50.000 0.00 0.00 0.00 3.28
127 128 1.646540 CGCAGCTCAACGAAACCAA 59.353 52.632 0.00 0.00 0.00 3.67
128 129 3.329231 CGCAGCTCAACGAAACCA 58.671 55.556 0.00 0.00 0.00 3.67
141 142 1.524355 CATCGGAAGTTCTATGCGCAG 59.476 52.381 18.32 2.56 0.00 5.18
142 143 1.136110 TCATCGGAAGTTCTATGCGCA 59.864 47.619 14.96 14.96 0.00 6.09
143 144 1.852942 TCATCGGAAGTTCTATGCGC 58.147 50.000 0.00 0.00 0.00 6.09
144 145 2.989840 GGATCATCGGAAGTTCTATGCG 59.010 50.000 2.25 0.00 0.00 4.73
145 146 4.264460 AGGATCATCGGAAGTTCTATGC 57.736 45.455 2.25 0.00 0.00 3.14
146 147 5.468072 CCAAAGGATCATCGGAAGTTCTATG 59.532 44.000 2.25 7.49 0.00 2.23
147 148 5.615289 CCAAAGGATCATCGGAAGTTCTAT 58.385 41.667 2.25 0.00 0.00 1.98
148 149 4.683400 GCCAAAGGATCATCGGAAGTTCTA 60.683 45.833 2.25 0.00 0.00 2.10
149 150 3.878778 CCAAAGGATCATCGGAAGTTCT 58.121 45.455 2.25 0.00 0.00 3.01
150 151 2.356069 GCCAAAGGATCATCGGAAGTTC 59.644 50.000 0.00 0.00 0.00 3.01
151 152 2.369394 GCCAAAGGATCATCGGAAGTT 58.631 47.619 0.00 0.00 0.00 2.66
152 153 1.743772 CGCCAAAGGATCATCGGAAGT 60.744 52.381 0.00 0.00 0.00 3.01
153 154 0.940126 CGCCAAAGGATCATCGGAAG 59.060 55.000 0.00 0.00 0.00 3.46
154 155 1.095228 GCGCCAAAGGATCATCGGAA 61.095 55.000 0.00 0.00 0.00 4.30
155 156 1.523711 GCGCCAAAGGATCATCGGA 60.524 57.895 0.00 0.00 0.00 4.55
156 157 1.524621 AGCGCCAAAGGATCATCGG 60.525 57.895 2.29 0.00 0.00 4.18
157 158 1.645455 CAGCGCCAAAGGATCATCG 59.355 57.895 2.29 0.00 0.00 3.84
158 159 2.028130 CCAGCGCCAAAGGATCATC 58.972 57.895 2.29 0.00 0.00 2.92
159 160 2.123428 GCCAGCGCCAAAGGATCAT 61.123 57.895 2.29 0.00 0.00 2.45
160 161 2.751436 GCCAGCGCCAAAGGATCA 60.751 61.111 2.29 0.00 0.00 2.92
177 178 3.560251 CCCCACAGGCCTATCCGG 61.560 72.222 3.98 3.09 40.77 5.14
178 179 2.375345 AACCCCACAGGCCTATCCG 61.375 63.158 3.98 0.00 40.58 4.18
179 180 1.227383 CAACCCCACAGGCCTATCC 59.773 63.158 3.98 0.00 40.58 2.59
180 181 0.394352 CACAACCCCACAGGCCTATC 60.394 60.000 3.98 0.00 40.58 2.08
181 182 1.140134 ACACAACCCCACAGGCCTAT 61.140 55.000 3.98 0.00 40.58 2.57
182 183 1.357272 AACACAACCCCACAGGCCTA 61.357 55.000 3.98 0.00 40.58 3.93
183 184 1.357272 TAACACAACCCCACAGGCCT 61.357 55.000 0.00 0.00 40.58 5.19
184 185 0.251608 ATAACACAACCCCACAGGCC 60.252 55.000 0.00 0.00 40.58 5.19
185 186 0.887933 CATAACACAACCCCACAGGC 59.112 55.000 0.00 0.00 40.58 4.85
186 187 2.159382 GTCATAACACAACCCCACAGG 58.841 52.381 0.00 0.00 43.78 4.00
187 188 3.140325 AGTCATAACACAACCCCACAG 57.860 47.619 0.00 0.00 0.00 3.66
188 189 3.218453 CAAGTCATAACACAACCCCACA 58.782 45.455 0.00 0.00 0.00 4.17
189 190 3.219281 ACAAGTCATAACACAACCCCAC 58.781 45.455 0.00 0.00 0.00 4.61
190 191 3.586470 ACAAGTCATAACACAACCCCA 57.414 42.857 0.00 0.00 0.00 4.96
191 192 4.339814 TGAAACAAGTCATAACACAACCCC 59.660 41.667 0.00 0.00 0.00 4.95
192 193 5.278604 GTGAAACAAGTCATAACACAACCC 58.721 41.667 0.00 0.00 36.32 4.11
193 194 4.967575 CGTGAAACAAGTCATAACACAACC 59.032 41.667 0.00 0.00 35.74 3.77
194 195 4.436523 GCGTGAAACAAGTCATAACACAAC 59.563 41.667 0.00 0.00 35.74 3.32
195 196 4.334203 AGCGTGAAACAAGTCATAACACAA 59.666 37.500 0.00 0.00 35.74 3.33
196 197 3.874543 AGCGTGAAACAAGTCATAACACA 59.125 39.130 0.00 0.00 35.74 3.72
197 198 4.211389 CAGCGTGAAACAAGTCATAACAC 58.789 43.478 0.00 0.00 35.74 3.32
198 199 3.874543 ACAGCGTGAAACAAGTCATAACA 59.125 39.130 0.00 0.00 35.74 2.41
199 200 4.455124 GACAGCGTGAAACAAGTCATAAC 58.545 43.478 0.00 0.00 35.74 1.89
200 201 3.183574 CGACAGCGTGAAACAAGTCATAA 59.816 43.478 0.00 0.00 35.74 1.90
201 202 2.729360 CGACAGCGTGAAACAAGTCATA 59.271 45.455 0.00 0.00 35.74 2.15
202 203 1.526887 CGACAGCGTGAAACAAGTCAT 59.473 47.619 0.00 0.00 35.74 3.06
203 204 0.927537 CGACAGCGTGAAACAAGTCA 59.072 50.000 0.00 0.00 35.74 3.41
204 205 3.710233 CGACAGCGTGAAACAAGTC 57.290 52.632 0.00 0.00 35.74 3.01
215 216 0.796312 ATAAAGCCACAACGACAGCG 59.204 50.000 0.00 0.00 44.79 5.18
216 217 2.989422 AATAAAGCCACAACGACAGC 57.011 45.000 0.00 0.00 0.00 4.40
217 218 8.958175 TTAAATTAATAAAGCCACAACGACAG 57.042 30.769 0.00 0.00 0.00 3.51
218 219 9.400638 CTTTAAATTAATAAAGCCACAACGACA 57.599 29.630 0.00 0.00 36.42 4.35
229 230 5.394322 CGCGTCCGGCTTTAAATTAATAAAG 59.606 40.000 0.00 6.41 42.93 1.85
230 231 5.163774 ACGCGTCCGGCTTTAAATTAATAAA 60.164 36.000 5.58 0.00 40.44 1.40
231 232 4.332268 ACGCGTCCGGCTTTAAATTAATAA 59.668 37.500 5.58 0.00 40.44 1.40
232 233 3.870419 ACGCGTCCGGCTTTAAATTAATA 59.130 39.130 5.58 0.00 40.44 0.98
233 234 2.679336 ACGCGTCCGGCTTTAAATTAAT 59.321 40.909 5.58 0.00 40.44 1.40
234 235 2.075338 ACGCGTCCGGCTTTAAATTAA 58.925 42.857 5.58 0.00 40.44 1.40
235 236 1.660104 GACGCGTCCGGCTTTAAATTA 59.340 47.619 28.61 0.00 40.09 1.40
236 237 0.445043 GACGCGTCCGGCTTTAAATT 59.555 50.000 28.61 0.00 40.09 1.82
237 238 1.363885 GGACGCGTCCGGCTTTAAAT 61.364 55.000 39.77 0.00 43.69 1.40
238 239 2.028733 GGACGCGTCCGGCTTTAAA 61.029 57.895 39.77 0.00 43.69 1.52
239 240 2.432972 GGACGCGTCCGGCTTTAA 60.433 61.111 39.77 0.00 43.69 1.52
252 253 2.704193 GAACGAAGACGCACGGACG 61.704 63.158 0.00 0.00 43.96 4.79
253 254 0.110056 TAGAACGAAGACGCACGGAC 60.110 55.000 0.00 0.00 43.96 4.79
254 255 0.592637 TTAGAACGAAGACGCACGGA 59.407 50.000 0.00 0.00 43.96 4.69
255 256 1.411394 TTTAGAACGAAGACGCACGG 58.589 50.000 0.00 0.00 43.96 4.94
256 257 3.492725 TTTTTAGAACGAAGACGCACG 57.507 42.857 0.00 0.00 43.96 5.34
277 278 6.151985 TGGGCACAGAACGATATATTGTTTTT 59.848 34.615 17.65 8.38 34.63 1.94
278 279 5.650266 TGGGCACAGAACGATATATTGTTTT 59.350 36.000 17.65 10.71 34.63 2.43
279 280 5.189928 TGGGCACAGAACGATATATTGTTT 58.810 37.500 17.65 7.10 34.63 2.83
307 308 9.661563 TCGTATTTGTAGACAACCAAAAGATAT 57.338 29.630 0.00 0.00 35.28 1.63
325 326 4.511826 GGAGCTACCCATTTCTCGTATTTG 59.488 45.833 0.00 0.00 0.00 2.32
394 396 3.241701 CACACAAGTCACAACAACCAAC 58.758 45.455 0.00 0.00 0.00 3.77
457 461 3.357079 CCACCACAAGAGCACGCC 61.357 66.667 0.00 0.00 0.00 5.68
459 463 3.716006 CGCCACCACAAGAGCACG 61.716 66.667 0.00 0.00 0.00 5.34
515 520 1.222115 GCTCCGACGTGAAAACAGCT 61.222 55.000 0.00 0.00 0.00 4.24
539 544 2.871182 TATTTTGTTTGTGTGCCGCA 57.129 40.000 0.00 0.00 0.00 5.69
541 546 3.648009 ACCATATTTTGTTTGTGTGCCG 58.352 40.909 0.00 0.00 0.00 5.69
542 547 4.813697 ACAACCATATTTTGTTTGTGTGCC 59.186 37.500 0.00 0.00 33.23 5.01
552 557 8.904712 CATACGATTGCATACAACCATATTTTG 58.095 33.333 0.00 0.00 38.99 2.44
677 682 2.224670 TGTGACCCAGACCACATTAACC 60.225 50.000 0.00 0.00 38.26 2.85
689 694 0.830648 ATCGGTACCATGTGACCCAG 59.169 55.000 13.54 0.00 31.50 4.45
938 943 2.480390 AGACCTAGGTAGGAGACGACT 58.520 52.381 16.29 0.73 46.63 4.18
1235 1240 1.952102 GCTACCGGTTCCGTGGATCA 61.952 60.000 15.04 0.00 0.00 2.92
1340 1345 0.984230 TGACAAGATCAGACACCCCC 59.016 55.000 0.00 0.00 31.91 5.40
1400 1405 9.169592 GATCAACCAATCAAATTCCAAAATCAT 57.830 29.630 0.00 0.00 0.00 2.45
1516 1521 2.250921 TTGGATGGAACGGGTAGGTA 57.749 50.000 0.00 0.00 0.00 3.08
1529 1534 4.158209 TGCACATACCACAAGATTTGGATG 59.842 41.667 0.00 0.00 37.58 3.51
1594 1599 5.923114 CCAACTGCTAGCATGTATAGTACTG 59.077 44.000 19.72 10.83 0.00 2.74
1644 1654 5.022787 ACCTACCTACCGGTAACATACAAA 58.977 41.667 16.65 0.00 44.90 2.83
1645 1655 4.609301 ACCTACCTACCGGTAACATACAA 58.391 43.478 16.65 0.00 44.90 2.41
1673 1683 6.402222 CATCTTTAATCTAGGGCGCTATCTT 58.598 40.000 11.35 9.99 0.00 2.40
1678 1688 2.104792 TGCATCTTTAATCTAGGGCGCT 59.895 45.455 7.64 8.86 0.00 5.92
1681 1691 5.532406 TGAACATGCATCTTTAATCTAGGGC 59.468 40.000 0.00 0.00 0.00 5.19
1706 1716 9.559732 TGTAATCAACCAAACTATCCATATGAG 57.440 33.333 3.65 0.00 0.00 2.90
1742 1753 7.495901 TCTTTGTGATAAGATAGAGGAAGCAG 58.504 38.462 0.00 0.00 0.00 4.24
1752 1763 5.933617 AGCATGGCTCTTTGTGATAAGATA 58.066 37.500 0.00 0.00 30.62 1.98
1783 1794 6.031417 GCACGAAAATTGTACAGAAAAGATCG 59.969 38.462 0.00 4.56 0.00 3.69
1795 1806 1.141645 AGCGTCGCACGAAAATTGTA 58.858 45.000 21.09 0.00 46.05 2.41
1805 1816 1.124462 GATGATGAGTAGCGTCGCAC 58.876 55.000 21.09 14.96 35.18 5.34
1807 1818 1.002359 TCTGATGATGAGTAGCGTCGC 60.002 52.381 9.80 9.80 35.18 5.19
1810 1821 5.532779 TGAATAGTCTGATGATGAGTAGCGT 59.467 40.000 0.00 0.00 0.00 5.07
1811 1822 5.855925 GTGAATAGTCTGATGATGAGTAGCG 59.144 44.000 0.00 0.00 0.00 4.26
1841 1852 4.001226 TGCCCCGCAATTTGCACC 62.001 61.111 20.56 6.44 45.36 5.01
1856 1867 1.465689 CGACACAAAATCGGATGGTGC 60.466 52.381 14.08 8.61 35.92 5.01
1857 1868 1.804151 ACGACACAAAATCGGATGGTG 59.196 47.619 13.10 13.10 43.95 4.17
1885 1896 6.816640 ACATAACAACTGCATGTACGATAAGT 59.183 34.615 0.00 0.00 31.26 2.24
1887 1898 8.880878 ATACATAACAACTGCATGTACGATAA 57.119 30.769 0.00 0.00 37.82 1.75
1896 1907 7.829725 ACATTTGTGATACATAACAACTGCAT 58.170 30.769 8.84 0.00 39.33 3.96
1907 1918 9.474920 CAAACCAAACTTACATTTGTGATACAT 57.525 29.630 0.00 0.00 37.79 2.29
1913 1924 8.592105 ATGATCAAACCAAACTTACATTTGTG 57.408 30.769 0.00 0.00 37.79 3.33
1926 1937 5.003160 AGATTGTGTCGATGATCAAACCAA 58.997 37.500 0.00 6.16 0.00 3.67
1983 1994 5.960811 TCCACTCATCTCAGGATTTCTTAGT 59.039 40.000 0.00 0.00 0.00 2.24
1984 1995 6.279882 GTCCACTCATCTCAGGATTTCTTAG 58.720 44.000 0.00 0.00 31.91 2.18
1986 1997 4.382470 CGTCCACTCATCTCAGGATTTCTT 60.382 45.833 0.00 0.00 31.91 2.52
1995 2029 1.893062 CAGCCGTCCACTCATCTCA 59.107 57.895 0.00 0.00 0.00 3.27
2006 2040 4.197107 GATGTTAATAACAGCAGCCGTC 57.803 45.455 15.52 1.33 46.50 4.79
2037 2076 7.770801 TTTCGATGAATCTGGTACAATAGTG 57.229 36.000 0.00 0.00 38.70 2.74
2040 2079 9.045223 CAAGATTTCGATGAATCTGGTACAATA 57.955 33.333 12.04 0.00 43.66 1.90
2049 2088 4.202441 CCCCACAAGATTTCGATGAATCT 58.798 43.478 6.54 6.54 45.75 2.40
2066 2105 6.952773 TCAGTAAAAATGCATATACCCCAC 57.047 37.500 0.00 0.00 0.00 4.61
2068 2107 7.425606 CAGTTCAGTAAAAATGCATATACCCC 58.574 38.462 0.00 0.00 0.00 4.95
2069 2108 7.425606 CCAGTTCAGTAAAAATGCATATACCC 58.574 38.462 0.00 0.00 0.00 3.69
2156 2195 7.504924 TTAACCGAGCAATATTTCCTTATGG 57.495 36.000 0.00 0.00 0.00 2.74
2161 2200 7.285401 ACAATGATTAACCGAGCAATATTTCCT 59.715 33.333 0.00 0.00 0.00 3.36
2162 2201 7.425606 ACAATGATTAACCGAGCAATATTTCC 58.574 34.615 0.00 0.00 0.00 3.13
2163 2202 8.856490 AACAATGATTAACCGAGCAATATTTC 57.144 30.769 0.00 0.00 0.00 2.17
2195 2237 6.122277 CGATTAACCTATGGCCATGGAATAT 58.878 40.000 29.26 19.30 0.00 1.28
2198 2240 3.137544 ACGATTAACCTATGGCCATGGAA 59.862 43.478 29.26 16.36 0.00 3.53
2207 2249 7.496529 AATGATGGACAACGATTAACCTATG 57.503 36.000 0.00 0.00 0.00 2.23
2208 2250 8.519799 AAAATGATGGACAACGATTAACCTAT 57.480 30.769 0.00 0.00 0.00 2.57
2211 2253 5.737290 CGAAAATGATGGACAACGATTAACC 59.263 40.000 0.00 0.00 0.00 2.85
2218 2260 7.969387 AAATTATCGAAAATGATGGACAACG 57.031 32.000 0.00 0.00 0.00 4.10
2339 2386 6.385649 AGCGTGAGAACAAAAATTAAAGGA 57.614 33.333 0.00 0.00 0.00 3.36
2574 2621 0.177141 GTTAGGCAGCACATACCGGA 59.823 55.000 9.46 0.00 0.00 5.14
2672 2719 2.048603 GGTGATGGGAGCAGTTGGC 61.049 63.158 0.00 0.00 45.30 4.52
2689 2736 8.470805 CACAGGCTAATACTAATAGATACCTGG 58.529 40.741 0.00 0.00 44.12 4.45
2706 2753 2.161855 CTTGCATTGGACACAGGCTAA 58.838 47.619 0.00 0.00 32.12 3.09
2789 2836 7.652105 TGACGCTGATCTGAAGGTTAATTATAC 59.348 37.037 3.42 0.00 0.00 1.47
2815 2862 7.667219 CCATAGGTAGTTGCTCCATGATAATTT 59.333 37.037 0.00 0.00 0.00 1.82
2821 2868 3.384168 ACCATAGGTAGTTGCTCCATGA 58.616 45.455 0.00 0.00 32.11 3.07
2966 3013 7.664731 TGATTTTGGATGTAAATTTTGGTGCAT 59.335 29.630 0.00 0.00 0.00 3.96
3092 3162 8.821147 AAGGTTATACGATTTTTCCAAAAACC 57.179 30.769 0.00 0.00 40.33 3.27
3238 3309 1.315257 CCCAACCCCAAGCAATCTCG 61.315 60.000 0.00 0.00 0.00 4.04
3240 3311 1.079073 CCCCAACCCCAAGCAATCT 59.921 57.895 0.00 0.00 0.00 2.40
3386 4113 6.970043 GTGTACTACAATTGCACAAGAAAACA 59.030 34.615 5.05 4.04 0.00 2.83
3454 4182 3.149196 TGATGAAGGAAACTGGACAAGC 58.851 45.455 0.00 0.00 42.68 4.01
3651 4390 1.108776 AGGGCATCATCACATTGCAC 58.891 50.000 0.00 0.00 40.10 4.57
3667 4406 1.327303 TGTTGCACTGGCTTTAAGGG 58.673 50.000 0.00 0.00 41.91 3.95
3700 4439 5.413833 ACAATGGACAATGTGTTTGCAAAAA 59.586 32.000 14.67 5.49 39.03 1.94
3701 4440 4.940046 ACAATGGACAATGTGTTTGCAAAA 59.060 33.333 14.67 0.00 39.03 2.44
3702 4441 4.511527 ACAATGGACAATGTGTTTGCAAA 58.488 34.783 8.05 8.05 39.03 3.68
3703 4442 4.134379 ACAATGGACAATGTGTTTGCAA 57.866 36.364 0.00 0.00 39.03 4.08
3704 4443 3.815856 ACAATGGACAATGTGTTTGCA 57.184 38.095 0.00 0.00 39.03 4.08
3705 4444 5.119931 TCTACAATGGACAATGTGTTTGC 57.880 39.130 3.39 0.00 39.03 3.68
3706 4445 6.317789 ACTCTACAATGGACAATGTGTTTG 57.682 37.500 3.39 0.00 41.36 2.93
3707 4446 6.959639 AACTCTACAATGGACAATGTGTTT 57.040 33.333 3.39 0.00 0.00 2.83
3708 4447 6.959639 AAACTCTACAATGGACAATGTGTT 57.040 33.333 3.39 0.00 0.00 3.32
3709 4448 7.224297 AGTAAACTCTACAATGGACAATGTGT 58.776 34.615 3.39 0.00 0.00 3.72
3710 4449 7.148407 GGAGTAAACTCTACAATGGACAATGTG 60.148 40.741 9.84 0.00 42.48 3.21
3711 4450 6.879458 GGAGTAAACTCTACAATGGACAATGT 59.121 38.462 9.84 0.00 42.48 2.71
3712 4451 6.036083 CGGAGTAAACTCTACAATGGACAATG 59.964 42.308 9.84 0.00 42.48 2.82
3713 4452 6.070995 TCGGAGTAAACTCTACAATGGACAAT 60.071 38.462 9.84 0.00 42.48 2.71
3714 4453 5.244402 TCGGAGTAAACTCTACAATGGACAA 59.756 40.000 9.84 0.00 42.48 3.18
3951 4693 2.749776 CGGTTCGTGTGGCATCATATA 58.250 47.619 0.00 0.00 0.00 0.86
4064 4821 2.295349 CTGAAATCCATGGCCATAGTGC 59.705 50.000 20.30 1.83 0.00 4.40
4070 4827 9.772605 ATTTATATATTCTGAAATCCATGGCCA 57.227 29.630 8.56 8.56 0.00 5.36
4093 4850 3.189287 GGATCAGTGCGTCAGAAACATTT 59.811 43.478 0.00 0.00 0.00 2.32
4094 4851 2.744202 GGATCAGTGCGTCAGAAACATT 59.256 45.455 0.00 0.00 0.00 2.71
4095 4852 2.350522 GGATCAGTGCGTCAGAAACAT 58.649 47.619 0.00 0.00 0.00 2.71
4096 4853 1.795768 GGATCAGTGCGTCAGAAACA 58.204 50.000 0.00 0.00 0.00 2.83
4097 4854 0.716108 CGGATCAGTGCGTCAGAAAC 59.284 55.000 0.00 0.00 34.19 2.78
4098 4855 0.389817 CCGGATCAGTGCGTCAGAAA 60.390 55.000 0.00 0.00 37.49 2.52
4099 4856 1.215382 CCGGATCAGTGCGTCAGAA 59.785 57.895 0.00 0.00 37.49 3.02
4100 4857 2.885113 CCGGATCAGTGCGTCAGA 59.115 61.111 0.00 0.00 37.49 3.27
4101 4858 2.887568 GCCGGATCAGTGCGTCAG 60.888 66.667 5.05 0.00 37.49 3.51
4103 4860 2.887568 CAGCCGGATCAGTGCGTC 60.888 66.667 5.05 0.00 37.49 5.19
4106 4863 3.984193 AAGGCAGCCGGATCAGTGC 62.984 63.158 5.05 5.03 35.07 4.40
4137 4925 6.927416 ACGTACCTTGTCATTATACAACAGA 58.073 36.000 0.00 0.00 35.56 3.41
4138 4926 8.867112 ATACGTACCTTGTCATTATACAACAG 57.133 34.615 0.00 0.00 35.56 3.16
4147 4935 6.984474 CACCAGAATATACGTACCTTGTCATT 59.016 38.462 0.00 0.00 0.00 2.57
4179 4967 1.376609 GAGAACAATCGGCGCCCAAT 61.377 55.000 23.46 12.43 0.00 3.16
4187 4975 8.393366 CAGCAATATAATATGGAGAACAATCGG 58.607 37.037 0.00 0.00 0.00 4.18
4231 5020 3.497332 AGTGCTCCTACGCATCCTTATA 58.503 45.455 0.00 0.00 42.62 0.98
4232 5021 2.297597 GAGTGCTCCTACGCATCCTTAT 59.702 50.000 0.00 0.00 42.62 1.73
4233 5022 1.681793 GAGTGCTCCTACGCATCCTTA 59.318 52.381 0.00 0.00 42.62 2.69
4234 5023 0.461961 GAGTGCTCCTACGCATCCTT 59.538 55.000 0.00 0.00 42.62 3.36
4337 5510 5.221028 CCAGTATACCACGTACGGTTATTCA 60.221 44.000 21.06 0.00 40.67 2.57
4338 5511 5.215160 CCAGTATACCACGTACGGTTATTC 58.785 45.833 21.06 10.15 40.67 1.75
4340 5513 4.207165 ACCAGTATACCACGTACGGTTAT 58.793 43.478 21.06 14.16 40.67 1.89
4341 5514 3.616219 ACCAGTATACCACGTACGGTTA 58.384 45.455 21.06 7.68 40.67 2.85
4342 5515 2.446435 ACCAGTATACCACGTACGGTT 58.554 47.619 21.06 5.49 40.67 4.44
4344 5517 4.067896 AGATACCAGTATACCACGTACGG 58.932 47.826 21.06 8.46 0.00 4.02
4345 5518 4.751600 TCAGATACCAGTATACCACGTACG 59.248 45.833 15.01 15.01 0.00 3.67
4346 5519 6.814506 ATCAGATACCAGTATACCACGTAC 57.185 41.667 0.00 0.00 0.00 3.67
4348 5521 9.696572 ATAATATCAGATACCAGTATACCACGT 57.303 33.333 0.00 0.00 0.00 4.49
4384 5557 9.461312 AGTGGTAAGCTATATCAAAAACAATGA 57.539 29.630 0.00 0.00 0.00 2.57
4385 5558 9.722056 GAGTGGTAAGCTATATCAAAAACAATG 57.278 33.333 0.00 0.00 0.00 2.82
4386 5559 9.461312 TGAGTGGTAAGCTATATCAAAAACAAT 57.539 29.630 0.00 0.00 0.00 2.71
4387 5560 8.856153 TGAGTGGTAAGCTATATCAAAAACAA 57.144 30.769 0.00 0.00 0.00 2.83
4388 5561 8.892723 CATGAGTGGTAAGCTATATCAAAAACA 58.107 33.333 0.00 0.00 0.00 2.83
4389 5562 7.857885 GCATGAGTGGTAAGCTATATCAAAAAC 59.142 37.037 0.00 0.00 0.00 2.43
4390 5563 7.013274 GGCATGAGTGGTAAGCTATATCAAAAA 59.987 37.037 0.00 0.00 0.00 1.94
4391 5564 6.486657 GGCATGAGTGGTAAGCTATATCAAAA 59.513 38.462 0.00 0.00 0.00 2.44
4392 5565 5.997746 GGCATGAGTGGTAAGCTATATCAAA 59.002 40.000 0.00 0.00 0.00 2.69
4393 5566 5.071653 TGGCATGAGTGGTAAGCTATATCAA 59.928 40.000 0.00 0.00 0.00 2.57
4394 5567 4.592778 TGGCATGAGTGGTAAGCTATATCA 59.407 41.667 0.00 0.00 0.00 2.15
4395 5568 5.152623 TGGCATGAGTGGTAAGCTATATC 57.847 43.478 0.00 0.00 0.00 1.63
4396 5569 5.072329 ACTTGGCATGAGTGGTAAGCTATAT 59.928 40.000 7.45 0.00 0.00 0.86
4397 5570 4.408921 ACTTGGCATGAGTGGTAAGCTATA 59.591 41.667 7.45 0.00 0.00 1.31
4398 5571 3.200825 ACTTGGCATGAGTGGTAAGCTAT 59.799 43.478 7.45 0.00 0.00 2.97
4399 5572 2.571653 ACTTGGCATGAGTGGTAAGCTA 59.428 45.455 7.45 0.00 0.00 3.32
4400 5573 1.352352 ACTTGGCATGAGTGGTAAGCT 59.648 47.619 7.45 0.00 0.00 3.74
4401 5574 1.470098 CACTTGGCATGAGTGGTAAGC 59.530 52.381 10.79 0.00 40.58 3.09
4407 5580 4.707105 TCATATACCACTTGGCATGAGTG 58.293 43.478 11.54 11.54 43.19 3.51
4408 5581 5.573380 ATCATATACCACTTGGCATGAGT 57.427 39.130 7.45 6.70 35.81 3.41
4409 5582 9.842775 ATAATATCATATACCACTTGGCATGAG 57.157 33.333 7.45 0.00 35.81 2.90
4410 5583 9.836864 GATAATATCATATACCACTTGGCATGA 57.163 33.333 7.45 9.17 39.32 3.07
4411 5584 9.842775 AGATAATATCATATACCACTTGGCATG 57.157 33.333 2.84 0.00 39.32 4.06
4430 5603 9.185680 GGGCTTAGAAAAGGTCAAAAGATAATA 57.814 33.333 0.00 0.00 32.98 0.98
4431 5604 7.673926 TGGGCTTAGAAAAGGTCAAAAGATAAT 59.326 33.333 0.00 0.00 32.98 1.28
4432 5605 7.007723 TGGGCTTAGAAAAGGTCAAAAGATAA 58.992 34.615 0.00 0.00 32.98 1.75
4433 5606 6.548321 TGGGCTTAGAAAAGGTCAAAAGATA 58.452 36.000 0.00 0.00 32.98 1.98
4434 5607 5.393866 TGGGCTTAGAAAAGGTCAAAAGAT 58.606 37.500 0.00 0.00 32.98 2.40
4435 5608 4.798882 TGGGCTTAGAAAAGGTCAAAAGA 58.201 39.130 0.00 0.00 32.98 2.52
4476 5650 5.284079 ACATTAGTTCTCGTACGTTTGTGT 58.716 37.500 16.05 7.87 0.00 3.72
4477 5651 5.817616 ACATTAGTTCTCGTACGTTTGTG 57.182 39.130 16.05 7.30 0.00 3.33
4479 5653 7.201299 GGAAGTACATTAGTTCTCGTACGTTTG 60.201 40.741 16.05 7.21 39.33 2.93
4482 5656 5.645497 AGGAAGTACATTAGTTCTCGTACGT 59.355 40.000 16.05 0.00 39.33 3.57
4507 5689 3.740115 CATGCCCTATACACCCTAACAC 58.260 50.000 0.00 0.00 0.00 3.32
4512 5694 1.449271 ATGCATGCCCTATACACCCT 58.551 50.000 16.68 0.00 0.00 4.34
4566 5748 9.191995 TGATATACTTTTGCTGACATATACACG 57.808 33.333 0.00 0.00 0.00 4.49
4579 5761 9.546909 CATACGAATCCAATGATATACTTTTGC 57.453 33.333 0.00 0.00 0.00 3.68
4586 5768 6.040247 GTCCGCATACGAATCCAATGATATA 58.960 40.000 0.00 0.00 43.93 0.86
4657 5843 9.465985 GTAGTTCTAGGTCAATGATTTAGCTAC 57.534 37.037 0.00 0.00 0.00 3.58
4685 5871 0.321564 TCCAGGTGTGTAGTGCATGC 60.322 55.000 11.82 11.82 0.00 4.06
4686 5872 1.442769 GTCCAGGTGTGTAGTGCATG 58.557 55.000 0.00 0.00 0.00 4.06
4691 5878 2.654802 CCTCGTCCAGGTGTGTAGT 58.345 57.895 0.00 0.00 37.53 2.73
4735 5923 0.460987 CAGAGACGCATCCTTGGACC 60.461 60.000 0.00 0.00 0.00 4.46
4736 5924 0.460987 CCAGAGACGCATCCTTGGAC 60.461 60.000 0.00 0.00 32.86 4.02
4792 5993 4.650972 TGGGGAGCTTAACTACAAACAT 57.349 40.909 0.00 0.00 0.00 2.71
4828 6029 8.801715 ATTAAACATAAATAGATGCAAAGCGG 57.198 30.769 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.