Multiple sequence alignment - TraesCS1D01G397300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G397300 chr1D 100.000 3951 0 0 1 3951 465081157 465077207 0.000000e+00 7297.0
1 TraesCS1D01G397300 chr1D 81.570 293 28 17 1865 2153 465079159 465078889 6.650000e-53 219.0
2 TraesCS1D01G397300 chr1D 81.633 294 26 17 1999 2269 465079293 465079005 6.650000e-53 219.0
3 TraesCS1D01G397300 chr1D 96.875 96 3 0 3545 3640 30049412 30049507 1.140000e-35 161.0
4 TraesCS1D01G397300 chr1D 92.135 89 7 0 707 795 465080408 465080320 4.140000e-25 126.0
5 TraesCS1D01G397300 chr1D 92.135 89 7 0 750 838 465080451 465080363 4.140000e-25 126.0
6 TraesCS1D01G397300 chr1D 97.826 46 1 0 707 752 465080365 465080320 3.270000e-11 80.5
7 TraesCS1D01G397300 chr1D 97.826 46 1 0 793 838 465080451 465080406 3.270000e-11 80.5
8 TraesCS1D01G397300 chr1B 90.078 1290 75 16 2267 3546 642043004 642041758 0.000000e+00 1624.0
9 TraesCS1D01G397300 chr1B 91.574 985 59 7 707 1668 642045064 642044081 0.000000e+00 1338.0
10 TraesCS1D01G397300 chr1B 96.552 551 18 1 1719 2268 642043807 642043257 0.000000e+00 911.0
11 TraesCS1D01G397300 chr1B 80.907 419 43 20 1865 2268 642043526 642043130 2.990000e-76 296.0
12 TraesCS1D01G397300 chr1B 85.763 295 13 11 232 518 642045452 642045179 6.460000e-73 285.0
13 TraesCS1D01G397300 chr1B 86.607 224 6 6 3648 3871 642041695 642041496 3.970000e-55 226.0
14 TraesCS1D01G397300 chr1B 96.183 131 5 0 708 838 642045106 642044976 8.600000e-52 215.0
15 TraesCS1D01G397300 chr1B 80.952 294 28 16 1999 2269 642043660 642043372 1.440000e-49 207.0
16 TraesCS1D01G397300 chr1B 96.629 89 3 0 707 795 642045021 642044933 8.850000e-32 148.0
17 TraesCS1D01G397300 chr1B 97.500 80 2 0 3872 3951 642041367 642041288 1.910000e-28 137.0
18 TraesCS1D01G397300 chr1B 100.000 46 0 0 1676 1721 642043914 642043869 7.030000e-13 86.1
19 TraesCS1D01G397300 chr3D 89.388 245 22 4 1747 1990 289116824 289116583 4.960000e-79 305.0
20 TraesCS1D01G397300 chr3D 90.123 162 13 2 1993 2152 289116717 289116557 1.440000e-49 207.0
21 TraesCS1D01G397300 chr3B 89.388 245 22 4 1747 1990 381767791 381767550 4.960000e-79 305.0
22 TraesCS1D01G397300 chr3B 90.123 162 13 2 1993 2152 381767684 381767524 1.440000e-49 207.0
23 TraesCS1D01G397300 chr3A 86.531 245 28 5 1747 1990 379835118 379834878 8.420000e-67 265.0
24 TraesCS1D01G397300 chr3A 90.741 162 12 2 1993 2152 379835012 379834852 3.090000e-51 213.0
25 TraesCS1D01G397300 chr3A 96.875 96 3 0 3536 3631 438489132 438489037 1.140000e-35 161.0
26 TraesCS1D01G397300 chr2B 96.939 98 2 1 3541 3638 402387388 402387292 3.160000e-36 163.0
27 TraesCS1D01G397300 chrUn 96.875 96 3 0 3545 3640 226884329 226884234 1.140000e-35 161.0
28 TraesCS1D01G397300 chrUn 96.875 96 3 0 3545 3640 258641819 258641914 1.140000e-35 161.0
29 TraesCS1D01G397300 chrUn 96.875 96 3 0 3545 3640 314263336 314263431 1.140000e-35 161.0
30 TraesCS1D01G397300 chr7A 97.849 93 2 0 3537 3629 86235163 86235255 1.140000e-35 161.0
31 TraesCS1D01G397300 chr6B 90.756 119 5 5 3545 3662 342268394 342268507 1.900000e-33 154.0
32 TraesCS1D01G397300 chr7D 91.743 109 5 4 3526 3632 514348172 514348278 8.850000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G397300 chr1D 465077207 465081157 3950 True 1164.000000 7297 91.875000 1 3951 7 chr1D.!!$R1 3950
1 TraesCS1D01G397300 chr1B 642041288 642045452 4164 True 497.554545 1624 91.158636 232 3951 11 chr1B.!!$R1 3719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.034477 ACCCCGTAAAATCAGGGCAG 60.034 55.0 0.0 0.0 43.96 4.85 F
368 373 0.035056 CCCGAGTCCCAATCAAAGCT 60.035 55.0 0.0 0.0 0.00 3.74 F
1925 2224 0.109153 TTCAGCCACACAGTGCAGAT 59.891 50.0 0.0 0.0 31.34 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1443 0.321653 AAGGACCTTAGCTGCGGTTG 60.322 55.0 4.44 0.00 32.62 3.77 R
2348 2902 0.101939 TTGCTGCGCATCAAACACAA 59.898 45.0 23.19 10.44 38.76 3.33 R
3090 3648 0.176680 ACGCCTAGTGCTTCATCAGG 59.823 55.0 2.39 0.00 38.05 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.116463 CAGCGATGCATGCATGGT 58.884 55.556 36.73 27.57 36.70 3.55
18 19 1.299089 CAGCGATGCATGCATGGTG 60.299 57.895 36.73 32.38 36.70 4.17
19 20 2.027024 GCGATGCATGCATGGTGG 59.973 61.111 36.73 22.07 36.70 4.61
20 21 2.725641 CGATGCATGCATGGTGGG 59.274 61.111 36.73 16.20 36.70 4.61
21 22 1.824760 CGATGCATGCATGGTGGGA 60.825 57.895 36.73 5.06 36.70 4.37
22 23 1.792118 CGATGCATGCATGGTGGGAG 61.792 60.000 36.73 14.56 36.70 4.30
23 24 1.456892 ATGCATGCATGGTGGGAGG 60.457 57.895 31.74 0.11 35.03 4.30
24 25 2.836360 GCATGCATGGTGGGAGGG 60.836 66.667 27.34 0.00 0.00 4.30
25 26 3.009275 CATGCATGGTGGGAGGGA 58.991 61.111 19.40 0.00 0.00 4.20
26 27 1.152819 CATGCATGGTGGGAGGGAG 60.153 63.158 19.40 0.00 0.00 4.30
27 28 2.389449 ATGCATGGTGGGAGGGAGG 61.389 63.158 0.00 0.00 0.00 4.30
28 29 4.512914 GCATGGTGGGAGGGAGGC 62.513 72.222 0.00 0.00 0.00 4.70
29 30 3.813724 CATGGTGGGAGGGAGGCC 61.814 72.222 0.00 0.00 0.00 5.19
41 42 3.393106 GAGGCCCGACCCCGTAAA 61.393 66.667 0.00 0.00 40.58 2.01
42 43 2.929477 AGGCCCGACCCCGTAAAA 60.929 61.111 0.00 0.00 40.58 1.52
43 44 2.261430 GAGGCCCGACCCCGTAAAAT 62.261 60.000 0.00 0.00 40.58 1.82
44 45 1.820906 GGCCCGACCCCGTAAAATC 60.821 63.158 0.00 0.00 0.00 2.17
45 46 1.078285 GCCCGACCCCGTAAAATCA 60.078 57.895 0.00 0.00 0.00 2.57
46 47 1.093496 GCCCGACCCCGTAAAATCAG 61.093 60.000 0.00 0.00 0.00 2.90
47 48 0.463116 CCCGACCCCGTAAAATCAGG 60.463 60.000 0.00 0.00 0.00 3.86
48 49 0.463116 CCGACCCCGTAAAATCAGGG 60.463 60.000 0.00 0.00 45.75 4.45
49 50 1.093496 CGACCCCGTAAAATCAGGGC 61.093 60.000 0.00 0.00 43.96 5.19
50 51 0.034863 GACCCCGTAAAATCAGGGCA 60.035 55.000 0.00 0.00 43.96 5.36
51 52 0.034477 ACCCCGTAAAATCAGGGCAG 60.034 55.000 0.00 0.00 43.96 4.85
52 53 1.384222 CCCCGTAAAATCAGGGCAGC 61.384 60.000 0.00 0.00 43.74 5.25
53 54 1.384222 CCCGTAAAATCAGGGCAGCC 61.384 60.000 1.26 1.26 38.51 4.85
54 55 0.679640 CCGTAAAATCAGGGCAGCCA 60.680 55.000 15.19 0.00 0.00 4.75
55 56 1.173043 CGTAAAATCAGGGCAGCCAA 58.827 50.000 15.19 0.00 0.00 4.52
56 57 1.135402 CGTAAAATCAGGGCAGCCAAC 60.135 52.381 15.19 0.00 0.00 3.77
57 58 1.135402 GTAAAATCAGGGCAGCCAACG 60.135 52.381 15.19 0.00 0.00 4.10
58 59 0.539438 AAAATCAGGGCAGCCAACGA 60.539 50.000 15.19 6.45 0.00 3.85
59 60 0.962356 AAATCAGGGCAGCCAACGAG 60.962 55.000 15.19 0.00 0.00 4.18
60 61 3.984193 ATCAGGGCAGCCAACGAGC 62.984 63.158 15.19 0.00 0.00 5.03
68 69 2.591715 GCCAACGAGCGGCCATAT 60.592 61.111 2.24 0.00 44.22 1.78
69 70 2.607892 GCCAACGAGCGGCCATATC 61.608 63.158 2.24 0.00 44.22 1.63
70 71 1.069765 CCAACGAGCGGCCATATCT 59.930 57.895 2.24 0.00 0.00 1.98
71 72 0.532862 CCAACGAGCGGCCATATCTT 60.533 55.000 2.24 0.00 0.00 2.40
72 73 1.299541 CAACGAGCGGCCATATCTTT 58.700 50.000 2.24 0.00 0.00 2.52
73 74 2.479837 CAACGAGCGGCCATATCTTTA 58.520 47.619 2.24 0.00 0.00 1.85
74 75 3.067106 CAACGAGCGGCCATATCTTTAT 58.933 45.455 2.24 0.00 0.00 1.40
75 76 3.402628 ACGAGCGGCCATATCTTTATT 57.597 42.857 2.24 0.00 0.00 1.40
76 77 3.740115 ACGAGCGGCCATATCTTTATTT 58.260 40.909 2.24 0.00 0.00 1.40
77 78 4.134563 ACGAGCGGCCATATCTTTATTTT 58.865 39.130 2.24 0.00 0.00 1.82
78 79 4.578928 ACGAGCGGCCATATCTTTATTTTT 59.421 37.500 2.24 0.00 0.00 1.94
79 80 5.761234 ACGAGCGGCCATATCTTTATTTTTA 59.239 36.000 2.24 0.00 0.00 1.52
80 81 6.073222 ACGAGCGGCCATATCTTTATTTTTAG 60.073 38.462 2.24 0.00 0.00 1.85
81 82 6.013842 AGCGGCCATATCTTTATTTTTAGC 57.986 37.500 2.24 0.00 0.00 3.09
82 83 5.048013 AGCGGCCATATCTTTATTTTTAGCC 60.048 40.000 2.24 0.00 0.00 3.93
83 84 5.709966 CGGCCATATCTTTATTTTTAGCCC 58.290 41.667 2.24 0.00 33.04 5.19
84 85 5.619086 CGGCCATATCTTTATTTTTAGCCCG 60.619 44.000 2.24 0.00 33.04 6.13
85 86 5.243060 GGCCATATCTTTATTTTTAGCCCGT 59.757 40.000 0.00 0.00 0.00 5.28
86 87 6.149633 GCCATATCTTTATTTTTAGCCCGTG 58.850 40.000 0.00 0.00 0.00 4.94
87 88 6.016610 GCCATATCTTTATTTTTAGCCCGTGA 60.017 38.462 0.00 0.00 0.00 4.35
88 89 7.309194 GCCATATCTTTATTTTTAGCCCGTGAT 60.309 37.037 0.00 0.00 0.00 3.06
89 90 8.576442 CCATATCTTTATTTTTAGCCCGTGATT 58.424 33.333 0.00 0.00 0.00 2.57
93 94 9.965824 ATCTTTATTTTTAGCCCGTGATTAATG 57.034 29.630 0.00 0.00 0.00 1.90
94 95 7.918562 TCTTTATTTTTAGCCCGTGATTAATGC 59.081 33.333 0.00 0.00 0.00 3.56
95 96 4.379339 TTTTTAGCCCGTGATTAATGCC 57.621 40.909 0.00 0.00 0.00 4.40
96 97 2.719531 TTAGCCCGTGATTAATGCCA 57.280 45.000 0.00 0.00 0.00 4.92
97 98 2.949177 TAGCCCGTGATTAATGCCAT 57.051 45.000 0.00 0.00 0.00 4.40
98 99 1.321474 AGCCCGTGATTAATGCCATG 58.679 50.000 0.00 0.00 0.00 3.66
99 100 0.318955 GCCCGTGATTAATGCCATGC 60.319 55.000 0.00 0.00 0.00 4.06
100 101 0.314935 CCCGTGATTAATGCCATGCC 59.685 55.000 0.00 0.00 0.00 4.40
101 102 1.031235 CCGTGATTAATGCCATGCCA 58.969 50.000 0.00 0.00 0.00 4.92
102 103 1.001048 CCGTGATTAATGCCATGCCAG 60.001 52.381 0.00 0.00 0.00 4.85
103 104 1.601162 CGTGATTAATGCCATGCCAGC 60.601 52.381 0.00 0.00 0.00 4.85
104 105 1.042229 TGATTAATGCCATGCCAGCC 58.958 50.000 0.00 0.00 0.00 4.85
105 106 1.042229 GATTAATGCCATGCCAGCCA 58.958 50.000 0.00 0.00 0.00 4.75
106 107 1.413445 GATTAATGCCATGCCAGCCAA 59.587 47.619 0.00 0.00 0.00 4.52
107 108 1.498264 TTAATGCCATGCCAGCCAAT 58.502 45.000 0.00 0.00 0.00 3.16
108 109 0.753867 TAATGCCATGCCAGCCAATG 59.246 50.000 0.00 0.00 0.00 2.82
109 110 0.978667 AATGCCATGCCAGCCAATGA 60.979 50.000 0.00 0.00 0.00 2.57
110 111 1.399744 ATGCCATGCCAGCCAATGAG 61.400 55.000 0.00 0.00 0.00 2.90
111 112 2.792947 GCCATGCCAGCCAATGAGG 61.793 63.158 0.00 0.00 41.84 3.86
112 113 2.131709 CCATGCCAGCCAATGAGGG 61.132 63.158 0.00 0.00 38.09 4.30
113 114 1.076559 CATGCCAGCCAATGAGGGA 60.077 57.895 0.00 0.00 38.09 4.20
114 115 1.107538 CATGCCAGCCAATGAGGGAG 61.108 60.000 0.00 0.00 38.09 4.30
115 116 2.123982 GCCAGCCAATGAGGGAGG 60.124 66.667 0.00 0.00 38.09 4.30
116 117 2.683465 GCCAGCCAATGAGGGAGGA 61.683 63.158 0.00 0.00 38.09 3.71
117 118 1.530771 CCAGCCAATGAGGGAGGAG 59.469 63.158 0.00 0.00 38.09 3.69
118 119 1.530771 CAGCCAATGAGGGAGGAGG 59.469 63.158 0.00 0.00 38.09 4.30
119 120 0.984961 CAGCCAATGAGGGAGGAGGA 60.985 60.000 0.00 0.00 38.09 3.71
120 121 0.253347 AGCCAATGAGGGAGGAGGAA 60.253 55.000 0.00 0.00 38.09 3.36
121 122 0.849417 GCCAATGAGGGAGGAGGAAT 59.151 55.000 0.00 0.00 38.09 3.01
122 123 1.216427 GCCAATGAGGGAGGAGGAATT 59.784 52.381 0.00 0.00 38.09 2.17
123 124 2.443255 GCCAATGAGGGAGGAGGAATTA 59.557 50.000 0.00 0.00 38.09 1.40
124 125 3.117512 GCCAATGAGGGAGGAGGAATTAA 60.118 47.826 0.00 0.00 38.09 1.40
125 126 4.448347 GCCAATGAGGGAGGAGGAATTAAT 60.448 45.833 0.00 0.00 38.09 1.40
126 127 5.709594 CCAATGAGGGAGGAGGAATTAATT 58.290 41.667 0.00 0.00 0.00 1.40
127 128 6.694086 GCCAATGAGGGAGGAGGAATTAATTA 60.694 42.308 0.00 0.00 38.09 1.40
128 129 7.473593 CCAATGAGGGAGGAGGAATTAATTAT 58.526 38.462 0.00 0.00 0.00 1.28
129 130 7.952368 CCAATGAGGGAGGAGGAATTAATTATT 59.048 37.037 0.00 0.00 0.00 1.40
132 133 8.814448 TGAGGGAGGAGGAATTAATTATTACT 57.186 34.615 0.00 0.00 40.27 2.24
133 134 9.907819 TGAGGGAGGAGGAATTAATTATTACTA 57.092 33.333 0.00 0.00 37.54 1.82
153 154 8.731275 TTACTATATGTAATTTGTGCTGCTGT 57.269 30.769 0.00 0.00 36.33 4.40
154 155 9.825109 TTACTATATGTAATTTGTGCTGCTGTA 57.175 29.630 0.00 0.00 36.33 2.74
155 156 8.908786 ACTATATGTAATTTGTGCTGCTGTAT 57.091 30.769 0.00 0.00 0.00 2.29
156 157 8.993121 ACTATATGTAATTTGTGCTGCTGTATC 58.007 33.333 0.00 0.00 0.00 2.24
157 158 7.806409 ATATGTAATTTGTGCTGCTGTATCA 57.194 32.000 0.00 0.00 0.00 2.15
158 159 5.550232 TGTAATTTGTGCTGCTGTATCAG 57.450 39.130 0.00 0.00 37.15 2.90
159 160 5.244755 TGTAATTTGTGCTGCTGTATCAGA 58.755 37.500 0.00 0.00 36.19 3.27
160 161 4.959596 AATTTGTGCTGCTGTATCAGAG 57.040 40.909 0.00 0.00 36.19 3.35
161 162 3.683365 TTTGTGCTGCTGTATCAGAGA 57.317 42.857 0.00 0.00 36.19 3.10
162 163 2.955477 TGTGCTGCTGTATCAGAGAG 57.045 50.000 0.00 0.00 36.19 3.20
163 164 1.134877 TGTGCTGCTGTATCAGAGAGC 60.135 52.381 0.00 11.60 44.81 4.09
169 170 3.438297 GCTGTATCAGAGAGCGGTTAA 57.562 47.619 0.66 0.00 34.26 2.01
170 171 3.983741 GCTGTATCAGAGAGCGGTTAAT 58.016 45.455 0.66 0.00 34.26 1.40
171 172 4.372656 GCTGTATCAGAGAGCGGTTAATT 58.627 43.478 0.66 0.00 34.26 1.40
172 173 5.529791 GCTGTATCAGAGAGCGGTTAATTA 58.470 41.667 0.66 0.00 34.26 1.40
173 174 5.631512 GCTGTATCAGAGAGCGGTTAATTAG 59.368 44.000 0.66 0.00 34.26 1.73
174 175 6.085555 TGTATCAGAGAGCGGTTAATTAGG 57.914 41.667 0.00 0.00 0.00 2.69
175 176 5.831525 TGTATCAGAGAGCGGTTAATTAGGA 59.168 40.000 0.00 0.00 0.00 2.94
176 177 6.493802 TGTATCAGAGAGCGGTTAATTAGGAT 59.506 38.462 0.00 0.00 0.00 3.24
177 178 5.455056 TCAGAGAGCGGTTAATTAGGATC 57.545 43.478 0.00 0.00 0.00 3.36
178 179 4.893524 TCAGAGAGCGGTTAATTAGGATCA 59.106 41.667 0.00 0.00 0.00 2.92
179 180 5.362717 TCAGAGAGCGGTTAATTAGGATCAA 59.637 40.000 0.00 0.00 0.00 2.57
180 181 6.042093 TCAGAGAGCGGTTAATTAGGATCAAT 59.958 38.462 0.00 0.00 0.00 2.57
181 182 6.146837 CAGAGAGCGGTTAATTAGGATCAATG 59.853 42.308 0.00 0.00 0.00 2.82
182 183 5.308825 AGAGCGGTTAATTAGGATCAATGG 58.691 41.667 0.00 0.00 0.00 3.16
183 184 4.398319 AGCGGTTAATTAGGATCAATGGG 58.602 43.478 0.00 0.00 0.00 4.00
184 185 3.057526 GCGGTTAATTAGGATCAATGGGC 60.058 47.826 0.00 0.00 0.00 5.36
185 186 3.188460 CGGTTAATTAGGATCAATGGGCG 59.812 47.826 0.00 0.00 0.00 6.13
186 187 3.057526 GGTTAATTAGGATCAATGGGCGC 60.058 47.826 0.00 0.00 0.00 6.53
187 188 1.620822 AATTAGGATCAATGGGCGCC 58.379 50.000 21.18 21.18 0.00 6.53
188 189 0.606401 ATTAGGATCAATGGGCGCCG 60.606 55.000 22.54 6.52 0.00 6.46
189 190 3.825160 TAGGATCAATGGGCGCCGC 62.825 63.158 22.54 14.37 0.00 6.53
201 202 2.735478 CGCCGCCGCCGAATATTA 60.735 61.111 0.00 0.00 36.29 0.98
202 203 2.311701 CGCCGCCGCCGAATATTAA 61.312 57.895 0.00 0.00 36.29 1.40
203 204 1.495951 GCCGCCGCCGAATATTAAG 59.504 57.895 0.00 0.00 36.29 1.85
204 205 1.908066 GCCGCCGCCGAATATTAAGG 61.908 60.000 5.34 5.34 36.29 2.69
205 206 0.320073 CCGCCGCCGAATATTAAGGA 60.320 55.000 12.26 0.00 36.29 3.36
206 207 1.068474 CGCCGCCGAATATTAAGGAG 58.932 55.000 12.26 9.19 36.29 3.69
207 208 1.439679 GCCGCCGAATATTAAGGAGG 58.560 55.000 20.69 20.69 45.98 4.30
208 209 1.001633 GCCGCCGAATATTAAGGAGGA 59.998 52.381 25.94 0.00 46.10 3.71
209 210 2.354805 GCCGCCGAATATTAAGGAGGAT 60.355 50.000 25.94 0.00 46.10 3.24
210 211 3.868754 GCCGCCGAATATTAAGGAGGATT 60.869 47.826 25.94 0.00 46.10 3.01
211 212 4.324267 CCGCCGAATATTAAGGAGGATTT 58.676 43.478 20.50 0.00 46.10 2.17
212 213 4.760204 CCGCCGAATATTAAGGAGGATTTT 59.240 41.667 20.50 0.00 46.10 1.82
213 214 5.334879 CCGCCGAATATTAAGGAGGATTTTG 60.335 44.000 20.50 0.63 46.10 2.44
214 215 5.334879 CGCCGAATATTAAGGAGGATTTTGG 60.335 44.000 12.26 0.00 0.00 3.28
215 216 5.564848 GCCGAATATTAAGGAGGATTTTGGC 60.565 44.000 12.26 0.00 0.00 4.52
216 217 5.048013 CCGAATATTAAGGAGGATTTTGGCC 60.048 44.000 0.00 0.00 0.00 5.36
217 218 5.048013 CGAATATTAAGGAGGATTTTGGCCC 60.048 44.000 0.00 0.00 0.00 5.80
218 219 2.543037 TTAAGGAGGATTTTGGCCCC 57.457 50.000 0.00 0.00 0.00 5.80
219 220 1.388174 TAAGGAGGATTTTGGCCCCA 58.612 50.000 0.00 0.00 0.00 4.96
220 221 0.718408 AAGGAGGATTTTGGCCCCAT 59.282 50.000 0.00 0.00 0.00 4.00
221 222 1.619298 AGGAGGATTTTGGCCCCATA 58.381 50.000 0.00 0.00 0.00 2.74
222 223 2.155563 AGGAGGATTTTGGCCCCATAT 58.844 47.619 0.00 0.00 0.00 1.78
223 224 2.110721 AGGAGGATTTTGGCCCCATATC 59.889 50.000 0.00 0.00 0.00 1.63
224 225 2.110721 GGAGGATTTTGGCCCCATATCT 59.889 50.000 0.00 0.00 0.00 1.98
225 226 3.438520 GGAGGATTTTGGCCCCATATCTT 60.439 47.826 0.00 0.00 0.00 2.40
226 227 4.226384 GAGGATTTTGGCCCCATATCTTT 58.774 43.478 0.00 0.00 0.00 2.52
227 228 4.634411 AGGATTTTGGCCCCATATCTTTT 58.366 39.130 0.00 0.00 0.00 2.27
228 229 5.038962 AGGATTTTGGCCCCATATCTTTTT 58.961 37.500 0.00 0.00 0.00 1.94
229 230 5.104402 AGGATTTTGGCCCCATATCTTTTTG 60.104 40.000 0.00 0.00 0.00 2.44
230 231 5.104569 GGATTTTGGCCCCATATCTTTTTGA 60.105 40.000 0.00 0.00 0.00 2.69
248 249 4.561735 TTGAGTTTTGGATGGAAACGTC 57.438 40.909 0.00 0.00 46.03 4.34
261 262 1.464997 GAAACGTCTGACTGATTGGCC 59.535 52.381 6.21 0.00 0.00 5.36
286 287 1.344763 GTGGATGCGTAGGGATAGCTT 59.655 52.381 0.00 0.00 0.00 3.74
319 324 2.036089 CTCTACATAAGCCTCGTTCCCC 59.964 54.545 0.00 0.00 0.00 4.81
322 327 0.179045 CATAAGCCTCGTTCCCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
334 339 2.111043 CCCCAGCACACAACTCGT 59.889 61.111 0.00 0.00 0.00 4.18
341 346 0.937304 GCACACAACTCGTCACACAT 59.063 50.000 0.00 0.00 0.00 3.21
342 347 1.330521 GCACACAACTCGTCACACATT 59.669 47.619 0.00 0.00 0.00 2.71
343 348 2.223249 GCACACAACTCGTCACACATTT 60.223 45.455 0.00 0.00 0.00 2.32
344 349 3.730662 GCACACAACTCGTCACACATTTT 60.731 43.478 0.00 0.00 0.00 1.82
345 350 4.411327 CACACAACTCGTCACACATTTTT 58.589 39.130 0.00 0.00 0.00 1.94
346 351 5.564768 CACACAACTCGTCACACATTTTTA 58.435 37.500 0.00 0.00 0.00 1.52
347 352 6.198687 CACACAACTCGTCACACATTTTTAT 58.801 36.000 0.00 0.00 0.00 1.40
348 353 6.356977 CACACAACTCGTCACACATTTTTATC 59.643 38.462 0.00 0.00 0.00 1.75
349 354 5.851177 CACAACTCGTCACACATTTTTATCC 59.149 40.000 0.00 0.00 0.00 2.59
350 355 5.048991 ACAACTCGTCACACATTTTTATCCC 60.049 40.000 0.00 0.00 0.00 3.85
351 356 4.007659 ACTCGTCACACATTTTTATCCCC 58.992 43.478 0.00 0.00 0.00 4.81
352 357 3.004171 TCGTCACACATTTTTATCCCCG 58.996 45.455 0.00 0.00 0.00 5.73
353 358 3.004171 CGTCACACATTTTTATCCCCGA 58.996 45.455 0.00 0.00 0.00 5.14
354 359 3.063452 CGTCACACATTTTTATCCCCGAG 59.937 47.826 0.00 0.00 0.00 4.63
366 371 0.618458 TCCCCGAGTCCCAATCAAAG 59.382 55.000 0.00 0.00 0.00 2.77
368 373 0.035056 CCCGAGTCCCAATCAAAGCT 60.035 55.000 0.00 0.00 0.00 3.74
372 377 2.613977 CGAGTCCCAATCAAAGCTGAGT 60.614 50.000 0.00 0.00 34.23 3.41
373 378 3.368427 CGAGTCCCAATCAAAGCTGAGTA 60.368 47.826 0.00 0.00 34.23 2.59
374 379 4.187694 GAGTCCCAATCAAAGCTGAGTAG 58.812 47.826 0.00 0.00 34.23 2.57
375 380 3.584848 AGTCCCAATCAAAGCTGAGTAGT 59.415 43.478 0.00 0.00 34.23 2.73
376 381 4.777896 AGTCCCAATCAAAGCTGAGTAGTA 59.222 41.667 0.00 0.00 34.23 1.82
377 382 5.105146 AGTCCCAATCAAAGCTGAGTAGTAG 60.105 44.000 0.00 0.00 34.23 2.57
378 383 4.777896 TCCCAATCAAAGCTGAGTAGTAGT 59.222 41.667 0.00 0.00 34.23 2.73
379 384 5.955959 TCCCAATCAAAGCTGAGTAGTAGTA 59.044 40.000 0.00 0.00 34.23 1.82
380 385 6.096987 TCCCAATCAAAGCTGAGTAGTAGTAG 59.903 42.308 0.00 0.00 34.23 2.57
381 386 6.127310 CCCAATCAAAGCTGAGTAGTAGTAGT 60.127 42.308 0.00 0.00 34.23 2.73
389 394 8.721019 AAGCTGAGTAGTAGTAGTACTAGTTG 57.279 38.462 20.24 17.77 42.98 3.16
390 395 6.762661 AGCTGAGTAGTAGTAGTACTAGTTGC 59.237 42.308 25.20 25.20 42.98 4.17
443 452 3.569049 CTCCGGCGTGTCTCCGTTT 62.569 63.158 6.01 0.00 45.09 3.60
451 460 0.307760 GTGTCTCCGTTTGGCTGTTG 59.692 55.000 0.00 0.00 34.14 3.33
453 462 1.139256 TGTCTCCGTTTGGCTGTTGTA 59.861 47.619 0.00 0.00 34.14 2.41
559 568 4.838152 GCCGGCCGCAAGATGAGA 62.838 66.667 22.85 0.00 43.02 3.27
560 569 2.109799 CCGGCCGCAAGATGAGAT 59.890 61.111 22.85 0.00 43.02 2.75
561 570 1.958205 CCGGCCGCAAGATGAGATC 60.958 63.158 22.85 0.00 43.02 2.75
562 571 1.958205 CGGCCGCAAGATGAGATCC 60.958 63.158 14.67 0.00 43.02 3.36
563 572 1.146930 GGCCGCAAGATGAGATCCA 59.853 57.895 0.00 0.00 43.02 3.41
564 573 1.162800 GGCCGCAAGATGAGATCCAC 61.163 60.000 0.00 0.00 43.02 4.02
565 574 0.462581 GCCGCAAGATGAGATCCACA 60.463 55.000 0.00 0.00 43.02 4.17
566 575 1.293924 CCGCAAGATGAGATCCACAC 58.706 55.000 0.00 0.00 43.02 3.82
567 576 1.293924 CGCAAGATGAGATCCACACC 58.706 55.000 0.00 0.00 43.02 4.16
590 599 4.347453 GTGCCGCCAACCAAGCTG 62.347 66.667 0.00 0.00 0.00 4.24
593 602 3.604667 CCGCCAACCAAGCTGCAA 61.605 61.111 1.02 0.00 0.00 4.08
594 603 2.416678 CGCCAACCAAGCTGCAAA 59.583 55.556 1.02 0.00 0.00 3.68
595 604 1.227205 CGCCAACCAAGCTGCAAAA 60.227 52.632 1.02 0.00 0.00 2.44
596 605 0.600782 CGCCAACCAAGCTGCAAAAT 60.601 50.000 1.02 0.00 0.00 1.82
597 606 1.150827 GCCAACCAAGCTGCAAAATC 58.849 50.000 1.02 0.00 0.00 2.17
598 607 1.270465 GCCAACCAAGCTGCAAAATCT 60.270 47.619 1.02 0.00 0.00 2.40
599 608 2.409975 CCAACCAAGCTGCAAAATCTG 58.590 47.619 1.02 0.00 0.00 2.90
600 609 2.036217 CCAACCAAGCTGCAAAATCTGA 59.964 45.455 1.02 0.00 0.00 3.27
601 610 3.314553 CAACCAAGCTGCAAAATCTGAG 58.685 45.455 1.02 0.00 0.00 3.35
602 611 2.590821 ACCAAGCTGCAAAATCTGAGT 58.409 42.857 1.02 0.00 0.00 3.41
603 612 2.295349 ACCAAGCTGCAAAATCTGAGTG 59.705 45.455 1.02 0.00 0.00 3.51
604 613 2.295349 CCAAGCTGCAAAATCTGAGTGT 59.705 45.455 1.02 0.00 0.00 3.55
605 614 3.305964 CAAGCTGCAAAATCTGAGTGTG 58.694 45.455 1.02 0.00 0.00 3.82
606 615 1.268899 AGCTGCAAAATCTGAGTGTGC 59.731 47.619 13.05 13.05 35.75 4.57
607 616 1.668047 GCTGCAAAATCTGAGTGTGCC 60.668 52.381 16.74 0.00 34.25 5.01
608 617 0.592637 TGCAAAATCTGAGTGTGCCG 59.407 50.000 16.74 0.00 34.25 5.69
609 618 0.593128 GCAAAATCTGAGTGTGCCGT 59.407 50.000 9.03 0.00 0.00 5.68
610 619 1.001378 GCAAAATCTGAGTGTGCCGTT 60.001 47.619 9.03 0.00 0.00 4.44
611 620 2.918131 GCAAAATCTGAGTGTGCCGTTC 60.918 50.000 9.03 0.00 0.00 3.95
612 621 1.148310 AAATCTGAGTGTGCCGTTCG 58.852 50.000 0.00 0.00 0.00 3.95
613 622 0.317160 AATCTGAGTGTGCCGTTCGA 59.683 50.000 0.00 0.00 0.00 3.71
614 623 0.388649 ATCTGAGTGTGCCGTTCGAC 60.389 55.000 0.00 0.00 0.00 4.20
615 624 1.007271 CTGAGTGTGCCGTTCGACT 60.007 57.895 0.00 0.00 0.00 4.18
616 625 0.240145 CTGAGTGTGCCGTTCGACTA 59.760 55.000 0.00 0.00 0.00 2.59
617 626 0.240145 TGAGTGTGCCGTTCGACTAG 59.760 55.000 0.00 0.00 0.00 2.57
618 627 0.240411 GAGTGTGCCGTTCGACTAGT 59.760 55.000 0.00 0.00 0.00 2.57
619 628 0.240411 AGTGTGCCGTTCGACTAGTC 59.760 55.000 13.18 13.18 0.00 2.59
620 629 0.731855 GTGTGCCGTTCGACTAGTCC 60.732 60.000 17.23 2.51 0.00 3.85
621 630 1.174078 TGTGCCGTTCGACTAGTCCA 61.174 55.000 17.23 0.89 0.00 4.02
622 631 0.731855 GTGCCGTTCGACTAGTCCAC 60.732 60.000 17.23 13.44 0.00 4.02
623 632 1.513586 GCCGTTCGACTAGTCCACG 60.514 63.158 25.27 25.27 34.42 4.94
624 633 1.513586 CCGTTCGACTAGTCCACGC 60.514 63.158 26.21 11.91 33.73 5.34
625 634 1.208358 CGTTCGACTAGTCCACGCA 59.792 57.895 22.49 0.73 0.00 5.24
626 635 1.063951 CGTTCGACTAGTCCACGCAC 61.064 60.000 22.49 10.95 0.00 5.34
627 636 1.063951 GTTCGACTAGTCCACGCACG 61.064 60.000 17.23 4.46 0.00 5.34
628 637 2.191354 TTCGACTAGTCCACGCACGG 62.191 60.000 17.23 0.71 0.00 4.94
629 638 2.181021 GACTAGTCCACGCACGGG 59.819 66.667 12.13 0.00 0.00 5.28
630 639 2.282674 ACTAGTCCACGCACGGGA 60.283 61.111 0.00 0.00 0.00 5.14
635 644 4.595538 TCCACGCACGGGACACAC 62.596 66.667 0.00 0.00 0.00 3.82
640 649 4.307908 GCACGGGACACACGCAAC 62.308 66.667 0.00 0.00 34.00 4.17
641 650 3.645975 CACGGGACACACGCAACC 61.646 66.667 0.00 0.00 34.00 3.77
642 651 4.164087 ACGGGACACACGCAACCA 62.164 61.111 0.00 0.00 34.00 3.67
643 652 2.897846 CGGGACACACGCAACCAA 60.898 61.111 0.00 0.00 0.00 3.67
644 653 2.473760 CGGGACACACGCAACCAAA 61.474 57.895 0.00 0.00 0.00 3.28
645 654 1.358759 GGGACACACGCAACCAAAG 59.641 57.895 0.00 0.00 0.00 2.77
646 655 1.299089 GGACACACGCAACCAAAGC 60.299 57.895 0.00 0.00 0.00 3.51
647 656 1.431440 GACACACGCAACCAAAGCA 59.569 52.632 0.00 0.00 0.00 3.91
648 657 0.179150 GACACACGCAACCAAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
649 658 0.179140 ACACACGCAACCAAAGCAAG 60.179 50.000 0.00 0.00 0.00 4.01
650 659 1.226945 ACACGCAACCAAAGCAAGC 60.227 52.632 0.00 0.00 0.00 4.01
651 660 1.066257 CACGCAACCAAAGCAAGCT 59.934 52.632 0.00 0.00 0.00 3.74
652 661 0.528249 CACGCAACCAAAGCAAGCTT 60.528 50.000 0.59 0.59 37.98 3.74
653 662 0.528249 ACGCAACCAAAGCAAGCTTG 60.528 50.000 22.44 22.44 36.26 4.01
686 695 4.547367 CGAGGGTTCCATCCGGCC 62.547 72.222 0.00 0.00 0.00 6.13
687 696 3.407967 GAGGGTTCCATCCGGCCA 61.408 66.667 2.24 0.00 0.00 5.36
688 697 3.406595 GAGGGTTCCATCCGGCCAG 62.407 68.421 2.24 0.00 0.00 4.85
689 698 4.506255 GGGTTCCATCCGGCCAGG 62.506 72.222 2.24 5.27 42.97 4.45
690 699 4.506255 GGTTCCATCCGGCCAGGG 62.506 72.222 2.24 0.00 41.52 4.45
691 700 3.407967 GTTCCATCCGGCCAGGGA 61.408 66.667 2.24 1.76 41.52 4.20
692 701 3.407967 TTCCATCCGGCCAGGGAC 61.408 66.667 2.24 0.00 39.34 4.46
693 702 4.731853 TCCATCCGGCCAGGGACA 62.732 66.667 2.24 0.00 39.34 4.02
694 703 4.489771 CCATCCGGCCAGGGACAC 62.490 72.222 2.24 0.00 39.34 3.67
695 704 3.716195 CATCCGGCCAGGGACACA 61.716 66.667 2.24 0.00 39.34 3.72
696 705 3.717294 ATCCGGCCAGGGACACAC 61.717 66.667 2.24 0.00 39.34 3.82
739 748 4.640690 ACCCGTCTCCACCCTGCT 62.641 66.667 0.00 0.00 0.00 4.24
767 776 2.650778 CCGGCAGCCTTCAAAACC 59.349 61.111 10.54 0.00 0.00 3.27
855 907 0.539051 CCATCTCACCTCACCTCACC 59.461 60.000 0.00 0.00 0.00 4.02
856 908 1.566211 CATCTCACCTCACCTCACCT 58.434 55.000 0.00 0.00 0.00 4.00
857 909 1.480137 CATCTCACCTCACCTCACCTC 59.520 57.143 0.00 0.00 0.00 3.85
858 910 0.251832 TCTCACCTCACCTCACCTCC 60.252 60.000 0.00 0.00 0.00 4.30
859 911 0.252012 CTCACCTCACCTCACCTCCT 60.252 60.000 0.00 0.00 0.00 3.69
860 912 0.251832 TCACCTCACCTCACCTCCTC 60.252 60.000 0.00 0.00 0.00 3.71
864 916 0.894141 CTCACCTCACCTCCTCACAG 59.106 60.000 0.00 0.00 0.00 3.66
888 943 7.713073 CAGAAAGACAGACCTCCCTATAAAATC 59.287 40.741 0.00 0.00 0.00 2.17
935 990 0.758685 CTCCTCTCTCCATTCCGCCT 60.759 60.000 0.00 0.00 0.00 5.52
955 1010 3.680786 GCCGCCACCCTCCAAAAC 61.681 66.667 0.00 0.00 0.00 2.43
958 1013 2.603473 GCCACCCTCCAAAACCCC 60.603 66.667 0.00 0.00 0.00 4.95
960 1015 1.533033 CCACCCTCCAAAACCCCAC 60.533 63.158 0.00 0.00 0.00 4.61
961 1016 1.533033 CACCCTCCAAAACCCCACC 60.533 63.158 0.00 0.00 0.00 4.61
962 1017 1.703597 ACCCTCCAAAACCCCACCT 60.704 57.895 0.00 0.00 0.00 4.00
964 1019 1.303317 CCTCCAAAACCCCACCTCG 60.303 63.158 0.00 0.00 0.00 4.63
1004 1074 4.299796 ACCACCACCCACCATGGC 62.300 66.667 13.04 0.00 41.31 4.40
1015 1085 0.960364 CACCATGGCTACACCCACAC 60.960 60.000 13.04 0.00 37.79 3.82
1020 1090 1.002502 GGCTACACCCACACCCTTC 60.003 63.158 0.00 0.00 0.00 3.46
1032 1102 0.512952 CACCCTTCAAGTTCTTCGCG 59.487 55.000 0.00 0.00 0.00 5.87
1143 1213 2.281761 ACCAACGAGGCCAAGCTG 60.282 61.111 5.01 0.00 43.14 4.24
1149 1219 2.044551 GAGGCCAAGCTGAAGGGG 60.045 66.667 5.01 0.00 0.00 4.79
1152 1222 1.680314 GGCCAAGCTGAAGGGGAAG 60.680 63.158 0.00 0.00 0.00 3.46
1160 1230 3.421386 GAAGGGGAAGGGGGAGGC 61.421 72.222 0.00 0.00 0.00 4.70
1310 1380 0.955428 GACGCATCTTCAGCCACCAA 60.955 55.000 0.00 0.00 0.00 3.67
1326 1396 1.640069 CAATGCGCTCGTGGATCTG 59.360 57.895 9.73 0.00 0.00 2.90
1392 1462 0.321653 CAACCGCAGCTAAGGTCCTT 60.322 55.000 9.62 9.62 40.37 3.36
1473 1543 2.985847 AACTTCGCCAAGGCTGCC 60.986 61.111 11.65 11.65 39.32 4.85
1503 1573 2.126031 GCGTCCCCGACAGACTTC 60.126 66.667 0.00 0.00 35.63 3.01
1512 1582 2.228343 CCCGACAGACTTCTACGTCTTT 59.772 50.000 0.00 0.00 42.10 2.52
1522 1592 2.885616 TCTACGTCTTTTCCTGGGAGT 58.114 47.619 0.00 0.00 0.00 3.85
1644 1719 9.575868 CTAGTTAGAGAGGATAGTATTGGTCAA 57.424 37.037 0.00 0.00 0.00 3.18
1668 1743 7.753309 ACAACAGTGTGGTTATGCTAAATTA 57.247 32.000 0.00 0.00 36.31 1.40
1670 1745 8.296713 ACAACAGTGTGGTTATGCTAAATTAAG 58.703 33.333 0.00 0.00 36.31 1.85
1671 1746 6.852664 ACAGTGTGGTTATGCTAAATTAAGC 58.147 36.000 0.00 0.00 43.08 3.09
1842 2141 7.484140 TGCAAGTCATGTTTTTACATGTACAA 58.516 30.769 4.68 2.23 45.53 2.41
1925 2224 0.109153 TTCAGCCACACAGTGCAGAT 59.891 50.000 0.00 0.00 31.34 2.90
1965 2264 3.574396 TGTAGCCTGCTATGGTACTCATC 59.426 47.826 1.65 0.00 37.30 2.92
1966 2265 1.615883 AGCCTGCTATGGTACTCATCG 59.384 52.381 0.00 0.00 37.30 3.84
2079 2378 8.134895 TGCAGTTTTCTTCAGTTATTTTAGGTG 58.865 33.333 0.00 0.00 0.00 4.00
2103 2402 3.070734 AGCCTGCTATGTTACTCATCAGG 59.929 47.826 9.66 9.66 44.56 3.86
2125 2424 6.418819 CAGGTTCTTACTTTCAATGTGCAAAG 59.581 38.462 0.00 0.00 35.97 2.77
2157 2456 1.127582 CGTTTCAGTCAAGCTAGCTGC 59.872 52.381 20.16 11.84 43.29 5.25
2219 2518 7.176865 GTGTAGCCTACTATGGTAATCATCAGA 59.823 40.741 3.13 0.00 37.30 3.27
2225 2524 7.757173 CCTACTATGGTAATCATCAGATTCGTG 59.243 40.741 0.00 0.00 43.26 4.35
2241 2540 5.984926 AGATTCGTGTTTTCAATGTGCAAAT 59.015 32.000 0.00 0.00 0.00 2.32
2341 2895 5.761234 CGCTTCTCCTACTAGTATCTGACTT 59.239 44.000 2.33 0.00 39.81 3.01
2348 2902 7.281098 TCCTACTAGTATCTGACTTTGTCGAT 58.719 38.462 2.33 0.00 39.81 3.59
2352 2906 7.030165 ACTAGTATCTGACTTTGTCGATTGTG 58.970 38.462 0.00 0.00 39.81 3.33
2361 2915 2.592796 TGTCGATTGTGTTTGATGCG 57.407 45.000 0.00 0.00 0.00 4.73
2392 2946 1.134551 CAAGAAGGTCCAGCTCCTAGC 60.135 57.143 0.00 0.00 42.84 3.42
2423 2977 3.718723 AGAGATGGGAGAAACAGCTACT 58.281 45.455 0.00 0.00 34.26 2.57
2426 2980 2.859165 TGGGAGAAACAGCTACTTGG 57.141 50.000 0.00 0.00 0.00 3.61
2432 2986 0.955919 AAACAGCTACTTGGAGGCGC 60.956 55.000 0.00 0.00 0.00 6.53
2437 2991 0.462759 GCTACTTGGAGGCGCTCATT 60.463 55.000 7.64 0.00 31.08 2.57
2480 3034 0.822532 GAGGGGGCAGATCATTGCAG 60.823 60.000 8.97 0.00 45.86 4.41
2481 3035 1.076485 GGGGGCAGATCATTGCAGT 60.076 57.895 8.97 0.00 45.86 4.40
2501 3055 2.049156 CAGCTCGCCTCGTCAACA 60.049 61.111 0.00 0.00 0.00 3.33
2506 3060 2.154798 CTCGCCTCGTCAACAGGGAA 62.155 60.000 0.00 0.00 0.00 3.97
2545 3099 7.417612 GCCAAGTTATGTCGATCAACAATATT 58.582 34.615 0.00 0.00 31.81 1.28
2560 3114 7.541162 TCAACAATATTGCAGAAATCTTGAGG 58.459 34.615 15.48 0.00 36.39 3.86
2563 3117 5.998454 ATATTGCAGAAATCTTGAGGTCG 57.002 39.130 0.00 0.00 0.00 4.79
2567 3121 0.895530 AGAAATCTTGAGGTCGCCGA 59.104 50.000 0.00 0.00 0.00 5.54
2569 3123 2.093447 AGAAATCTTGAGGTCGCCGATT 60.093 45.455 0.00 0.00 0.00 3.34
2590 3144 0.608640 ATGTCGGGTCACCTCAACTC 59.391 55.000 0.00 0.00 33.28 3.01
2599 3153 2.027192 GTCACCTCAACTCAAGGCCATA 60.027 50.000 5.01 0.00 37.42 2.74
2600 3154 2.846206 TCACCTCAACTCAAGGCCATAT 59.154 45.455 5.01 0.00 37.42 1.78
2611 3165 2.967270 GGCCATATTGCCCCATCTC 58.033 57.895 6.55 0.00 46.11 2.75
2617 3171 2.922740 TATTGCCCCATCTCGTTACC 57.077 50.000 0.00 0.00 0.00 2.85
2620 3174 0.916086 TGCCCCATCTCGTTACCATT 59.084 50.000 0.00 0.00 0.00 3.16
2626 3180 2.158900 CCATCTCGTTACCATTGCTCCT 60.159 50.000 0.00 0.00 0.00 3.69
2734 3288 2.125350 CAGGCAGCTTCCGAGGTC 60.125 66.667 0.00 0.00 0.00 3.85
2763 3317 3.411351 CCAGCCGACGGTGAAACG 61.411 66.667 16.73 0.00 40.02 3.60
2788 3342 1.156736 GGTGGAAGGACATCAACGTG 58.843 55.000 0.00 0.00 0.00 4.49
2789 3343 1.156736 GTGGAAGGACATCAACGTGG 58.843 55.000 0.00 0.00 0.00 4.94
2825 3379 0.809636 TACTGCAATCGGATGGTGCG 60.810 55.000 9.42 7.29 41.27 5.34
2826 3380 2.046411 TGCAATCGGATGGTGCGT 60.046 55.556 9.42 0.00 41.27 5.24
2881 3435 2.678336 CAAAGACTACCGCCCTGATTTC 59.322 50.000 0.00 0.00 0.00 2.17
2944 3498 4.020128 CCTCAGGCTAGTGGTAAGAACTTT 60.020 45.833 0.00 0.00 0.00 2.66
2955 3509 7.210873 AGTGGTAAGAACTTTGAGTAGACTTG 58.789 38.462 0.00 0.00 0.00 3.16
2985 3543 6.374333 TCAAGCATGTGGGAAGTAATAGAAAC 59.626 38.462 0.00 0.00 0.00 2.78
3017 3575 6.909357 CGTCTATGATCATTTTGCTTTCTTCC 59.091 38.462 14.65 0.00 0.00 3.46
3037 3595 3.839046 TACCTCCTGCGGGTGTGGT 62.839 63.158 22.88 22.88 37.65 4.16
3047 3605 1.226746 CGGGTGTGGTTCTTGAAGTC 58.773 55.000 0.00 0.00 0.00 3.01
3090 3648 5.220340 GCTTTTGTGATGTTGATGCTATTGC 60.220 40.000 0.00 0.00 40.20 3.56
3131 3689 7.386414 GCGTTTATGATCATTTTGCTTTCTTC 58.614 34.615 14.65 0.00 0.00 2.87
3136 3694 6.395426 TGATCATTTTGCTTTCTTCTGTGT 57.605 33.333 0.00 0.00 0.00 3.72
3165 3723 2.432444 CTGCGGGTGTGGATCTTAAAA 58.568 47.619 0.00 0.00 0.00 1.52
3174 3732 4.462483 GTGTGGATCTTAAAATGGGCAGAA 59.538 41.667 0.00 0.00 0.00 3.02
3176 3734 4.706962 GTGGATCTTAAAATGGGCAGAACT 59.293 41.667 0.00 0.00 0.00 3.01
3177 3735 4.706476 TGGATCTTAAAATGGGCAGAACTG 59.294 41.667 0.00 0.00 0.00 3.16
3193 3751 5.563842 CAGAACTGCTAATTAAAGCTTCCG 58.436 41.667 0.00 0.00 43.19 4.30
3216 3774 3.510753 TGCTGTTGATGTTGGCATATGTT 59.489 39.130 4.29 0.00 35.07 2.71
3223 3781 4.021280 TGATGTTGGCATATGTTTGCTTGT 60.021 37.500 4.29 0.00 42.38 3.16
3250 3808 3.175929 GTTTGTTTCGTTGGTCTGGTTG 58.824 45.455 0.00 0.00 0.00 3.77
3264 3822 3.123621 GTCTGGTTGATTTAGTCGCTGTG 59.876 47.826 0.00 0.00 0.00 3.66
3295 3853 0.108424 CTCTTTGTGGAGAGGGCTCG 60.108 60.000 0.00 0.00 42.25 5.03
3296 3854 1.743252 CTTTGTGGAGAGGGCTCGC 60.743 63.158 0.00 0.00 42.25 5.03
3297 3855 3.589654 TTTGTGGAGAGGGCTCGCG 62.590 63.158 0.00 0.00 42.25 5.87
3299 3857 4.200283 GTGGAGAGGGCTCGCGAG 62.200 72.222 31.37 31.37 42.25 5.03
3312 3870 2.185867 GCGAGGCGGTAATGTCCA 59.814 61.111 0.00 0.00 0.00 4.02
3313 3871 1.227556 GCGAGGCGGTAATGTCCAT 60.228 57.895 0.00 0.00 0.00 3.41
3314 3872 0.814010 GCGAGGCGGTAATGTCCATT 60.814 55.000 0.00 0.00 34.93 3.16
3315 3873 1.217882 CGAGGCGGTAATGTCCATTC 58.782 55.000 0.00 0.00 32.50 2.67
3335 3893 6.353951 CCATTCCCTGTTCCTAGTTTATTCCT 60.354 42.308 0.00 0.00 0.00 3.36
3336 3894 7.147373 CCATTCCCTGTTCCTAGTTTATTCCTA 60.147 40.741 0.00 0.00 0.00 2.94
3337 3895 8.440771 CATTCCCTGTTCCTAGTTTATTCCTAT 58.559 37.037 0.00 0.00 0.00 2.57
3338 3896 8.401955 TTCCCTGTTCCTAGTTTATTCCTATT 57.598 34.615 0.00 0.00 0.00 1.73
3367 3925 2.410322 GATGGGGTGTCAGGTGTGCA 62.410 60.000 0.00 0.00 0.00 4.57
3395 3953 2.543861 CGTAGTACACAGCAGGCCTATG 60.544 54.545 3.98 10.64 0.00 2.23
3417 3975 3.996150 CCAAGTTATTGCTATGGCCAG 57.004 47.619 13.05 0.00 37.74 4.85
3546 4109 4.462483 TCAAAATGGTGGCTTGGATTCTAC 59.538 41.667 0.00 0.00 0.00 2.59
3547 4110 4.322057 AAATGGTGGCTTGGATTCTACT 57.678 40.909 0.00 0.00 0.00 2.57
3548 4111 3.567478 ATGGTGGCTTGGATTCTACTC 57.433 47.619 0.00 0.00 0.00 2.59
3549 4112 1.559682 TGGTGGCTTGGATTCTACTCC 59.440 52.381 0.00 0.00 35.74 3.85
3550 4113 1.134068 GGTGGCTTGGATTCTACTCCC 60.134 57.143 0.00 0.00 34.12 4.30
3551 4114 1.840635 GTGGCTTGGATTCTACTCCCT 59.159 52.381 0.00 0.00 34.12 4.20
3552 4115 2.119495 TGGCTTGGATTCTACTCCCTC 58.881 52.381 0.00 0.00 34.12 4.30
3553 4116 1.418264 GGCTTGGATTCTACTCCCTCC 59.582 57.143 0.00 0.00 34.12 4.30
3554 4117 1.069358 GCTTGGATTCTACTCCCTCCG 59.931 57.143 0.00 0.00 34.12 4.63
3555 4118 2.389715 CTTGGATTCTACTCCCTCCGT 58.610 52.381 0.00 0.00 34.12 4.69
3556 4119 3.563223 CTTGGATTCTACTCCCTCCGTA 58.437 50.000 0.00 0.00 34.12 4.02
3557 4120 3.675348 TGGATTCTACTCCCTCCGTAA 57.325 47.619 0.00 0.00 34.12 3.18
3558 4121 3.985127 TGGATTCTACTCCCTCCGTAAA 58.015 45.455 0.00 0.00 34.12 2.01
3559 4122 3.703052 TGGATTCTACTCCCTCCGTAAAC 59.297 47.826 0.00 0.00 34.12 2.01
3560 4123 3.959449 GGATTCTACTCCCTCCGTAAACT 59.041 47.826 0.00 0.00 0.00 2.66
3561 4124 5.136105 GGATTCTACTCCCTCCGTAAACTA 58.864 45.833 0.00 0.00 0.00 2.24
3563 4126 6.267242 GGATTCTACTCCCTCCGTAAACTAAT 59.733 42.308 0.00 0.00 0.00 1.73
3567 4130 9.866655 TTCTACTCCCTCCGTAAACTAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
3568 4131 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
3569 4132 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
3570 4133 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3574 4137 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
3575 4138 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3623 4186 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3624 4187 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3625 4188 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3626 4189 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3627 4190 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3641 4204 9.661954 TTACAGAGGGAGTATAAATCATTCTCT 57.338 33.333 0.00 0.00 32.95 3.10
3643 4206 9.084533 ACAGAGGGAGTATAAATCATTCTCTAC 57.915 37.037 0.00 0.00 32.95 2.59
3644 4207 9.083422 CAGAGGGAGTATAAATCATTCTCTACA 57.917 37.037 0.00 0.00 32.95 2.74
3645 4208 9.836179 AGAGGGAGTATAAATCATTCTCTACAT 57.164 33.333 0.00 0.00 32.95 2.29
3674 4237 5.391312 AATGATACCTTCCAGCACAAAAC 57.609 39.130 0.00 0.00 0.00 2.43
3687 4250 2.229792 CACAAAACAAGCTAGGGCAGA 58.770 47.619 0.00 0.00 41.70 4.26
3693 4256 3.778954 ACAAGCTAGGGCAGATAATCC 57.221 47.619 0.00 0.00 41.70 3.01
3728 4291 9.604626 CTAACAAAAACTGAGCTCAGAATTAAG 57.395 33.333 42.76 29.87 46.59 1.85
3730 4293 8.000780 ACAAAAACTGAGCTCAGAATTAAGTT 57.999 30.769 42.76 25.71 46.59 2.66
3731 4294 7.917505 ACAAAAACTGAGCTCAGAATTAAGTTG 59.082 33.333 42.76 32.45 46.59 3.16
3732 4295 7.807977 AAAACTGAGCTCAGAATTAAGTTGA 57.192 32.000 42.76 6.05 46.59 3.18
3733 4296 7.432350 AAACTGAGCTCAGAATTAAGTTGAG 57.568 36.000 42.76 18.26 46.59 3.02
3742 4305 7.133891 TCAGAATTAAGTTGAGCTAGTTTGC 57.866 36.000 0.00 0.00 0.00 3.68
3743 4306 6.149474 TCAGAATTAAGTTGAGCTAGTTTGCC 59.851 38.462 0.00 0.00 0.00 4.52
3744 4307 5.416013 AGAATTAAGTTGAGCTAGTTTGCCC 59.584 40.000 0.00 0.00 0.00 5.36
3745 4308 2.959465 AAGTTGAGCTAGTTTGCCCT 57.041 45.000 0.00 0.00 0.00 5.19
3746 4309 2.959465 AGTTGAGCTAGTTTGCCCTT 57.041 45.000 0.00 0.00 0.00 3.95
3747 4310 2.784347 AGTTGAGCTAGTTTGCCCTTC 58.216 47.619 0.00 0.00 0.00 3.46
3748 4311 2.373502 AGTTGAGCTAGTTTGCCCTTCT 59.626 45.455 0.00 0.00 0.00 2.85
3749 4312 3.149981 GTTGAGCTAGTTTGCCCTTCTT 58.850 45.455 0.00 0.00 0.00 2.52
3750 4313 3.508845 TGAGCTAGTTTGCCCTTCTTT 57.491 42.857 0.00 0.00 0.00 2.52
3751 4314 3.149196 TGAGCTAGTTTGCCCTTCTTTG 58.851 45.455 0.00 0.00 0.00 2.77
3752 4315 2.489722 GAGCTAGTTTGCCCTTCTTTGG 59.510 50.000 0.00 0.00 0.00 3.28
3786 4349 1.174712 TTGCTGTTGCTTCTCTGCCC 61.175 55.000 0.00 0.00 40.48 5.36
3823 4386 5.048224 GCATCAATGATCAATCTAACCCTGG 60.048 44.000 0.00 0.00 0.00 4.45
3831 4394 2.695147 CAATCTAACCCTGGGGCATTTC 59.305 50.000 18.88 0.00 39.32 2.17
3875 4566 2.927580 CGTGTAGTCGCCTGGGTGT 61.928 63.158 0.00 0.00 0.00 4.16
3936 4627 3.763360 TGGTTCATTTTGCTAGGATGTGG 59.237 43.478 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.299089 CACCATGCATGCATCGCTG 60.299 57.895 30.07 20.04 33.90 5.18
1 2 2.486663 CCACCATGCATGCATCGCT 61.487 57.895 30.07 12.42 33.90 4.93
2 3 2.027024 CCACCATGCATGCATCGC 59.973 61.111 30.07 12.44 33.90 4.58
3 4 1.792118 CTCCCACCATGCATGCATCG 61.792 60.000 30.07 25.71 33.90 3.84
4 5 1.461091 CCTCCCACCATGCATGCATC 61.461 60.000 30.07 0.00 33.90 3.91
5 6 1.456892 CCTCCCACCATGCATGCAT 60.457 57.895 27.46 27.46 37.08 3.96
6 7 2.043752 CCTCCCACCATGCATGCA 60.044 61.111 25.04 25.04 0.00 3.96
7 8 2.836360 CCCTCCCACCATGCATGC 60.836 66.667 21.69 11.82 0.00 4.06
8 9 1.152819 CTCCCTCCCACCATGCATG 60.153 63.158 20.19 20.19 0.00 4.06
9 10 2.389449 CCTCCCTCCCACCATGCAT 61.389 63.158 0.00 0.00 0.00 3.96
10 11 3.016971 CCTCCCTCCCACCATGCA 61.017 66.667 0.00 0.00 0.00 3.96
11 12 4.512914 GCCTCCCTCCCACCATGC 62.513 72.222 0.00 0.00 0.00 4.06
12 13 3.813724 GGCCTCCCTCCCACCATG 61.814 72.222 0.00 0.00 0.00 3.66
24 25 2.261430 ATTTTACGGGGTCGGGCCTC 62.261 60.000 0.84 0.00 41.39 4.70
25 26 2.261430 GATTTTACGGGGTCGGGCCT 62.261 60.000 0.84 0.00 41.39 5.19
26 27 1.820906 GATTTTACGGGGTCGGGCC 60.821 63.158 0.00 0.00 41.39 5.80
27 28 1.078285 TGATTTTACGGGGTCGGGC 60.078 57.895 0.00 0.00 41.39 6.13
28 29 0.463116 CCTGATTTTACGGGGTCGGG 60.463 60.000 0.00 0.00 41.39 5.14
29 30 3.074594 CCTGATTTTACGGGGTCGG 57.925 57.895 0.00 0.00 41.39 4.79
34 35 1.384222 GGCTGCCCTGATTTTACGGG 61.384 60.000 7.66 0.00 41.06 5.28
35 36 0.679640 TGGCTGCCCTGATTTTACGG 60.680 55.000 17.53 0.00 0.00 4.02
36 37 1.135402 GTTGGCTGCCCTGATTTTACG 60.135 52.381 17.53 0.00 0.00 3.18
37 38 1.135402 CGTTGGCTGCCCTGATTTTAC 60.135 52.381 17.53 0.85 0.00 2.01
38 39 1.173043 CGTTGGCTGCCCTGATTTTA 58.827 50.000 17.53 0.00 0.00 1.52
39 40 0.539438 TCGTTGGCTGCCCTGATTTT 60.539 50.000 17.53 0.00 0.00 1.82
40 41 0.962356 CTCGTTGGCTGCCCTGATTT 60.962 55.000 17.53 0.00 0.00 2.17
41 42 1.377725 CTCGTTGGCTGCCCTGATT 60.378 57.895 17.53 0.00 0.00 2.57
42 43 2.270205 CTCGTTGGCTGCCCTGAT 59.730 61.111 17.53 0.00 0.00 2.90
43 44 4.704833 GCTCGTTGGCTGCCCTGA 62.705 66.667 17.53 10.16 0.00 3.86
52 53 0.532862 AAGATATGGCCGCTCGTTGG 60.533 55.000 0.00 0.00 0.00 3.77
53 54 1.299541 AAAGATATGGCCGCTCGTTG 58.700 50.000 0.00 0.00 0.00 4.10
54 55 2.902705 TAAAGATATGGCCGCTCGTT 57.097 45.000 0.00 1.86 0.00 3.85
55 56 3.402628 AATAAAGATATGGCCGCTCGT 57.597 42.857 0.00 0.00 0.00 4.18
56 57 4.749245 AAAATAAAGATATGGCCGCTCG 57.251 40.909 0.00 0.00 0.00 5.03
57 58 6.086871 GCTAAAAATAAAGATATGGCCGCTC 58.913 40.000 0.00 0.00 0.00 5.03
58 59 5.048013 GGCTAAAAATAAAGATATGGCCGCT 60.048 40.000 0.00 0.00 0.00 5.52
59 60 5.161358 GGCTAAAAATAAAGATATGGCCGC 58.839 41.667 0.00 0.00 0.00 6.53
60 61 5.709966 GGGCTAAAAATAAAGATATGGCCG 58.290 41.667 0.00 0.00 37.04 6.13
61 62 5.243060 ACGGGCTAAAAATAAAGATATGGCC 59.757 40.000 0.00 0.00 35.65 5.36
62 63 6.016610 TCACGGGCTAAAAATAAAGATATGGC 60.017 38.462 0.00 0.00 0.00 4.40
63 64 7.504924 TCACGGGCTAAAAATAAAGATATGG 57.495 36.000 0.00 0.00 0.00 2.74
67 68 9.965824 CATTAATCACGGGCTAAAAATAAAGAT 57.034 29.630 0.00 0.00 0.00 2.40
68 69 7.918562 GCATTAATCACGGGCTAAAAATAAAGA 59.081 33.333 0.00 0.00 0.00 2.52
69 70 7.169140 GGCATTAATCACGGGCTAAAAATAAAG 59.831 37.037 0.00 0.00 0.00 1.85
70 71 6.981559 GGCATTAATCACGGGCTAAAAATAAA 59.018 34.615 0.00 0.00 0.00 1.40
71 72 6.096987 TGGCATTAATCACGGGCTAAAAATAA 59.903 34.615 0.00 0.00 0.00 1.40
72 73 5.594725 TGGCATTAATCACGGGCTAAAAATA 59.405 36.000 0.00 0.00 0.00 1.40
73 74 4.404073 TGGCATTAATCACGGGCTAAAAAT 59.596 37.500 0.00 0.00 0.00 1.82
74 75 3.764434 TGGCATTAATCACGGGCTAAAAA 59.236 39.130 0.00 0.00 0.00 1.94
75 76 3.357203 TGGCATTAATCACGGGCTAAAA 58.643 40.909 0.00 0.00 0.00 1.52
76 77 3.006112 TGGCATTAATCACGGGCTAAA 57.994 42.857 0.00 0.00 0.00 1.85
77 78 2.719531 TGGCATTAATCACGGGCTAA 57.280 45.000 0.00 0.00 0.00 3.09
78 79 2.503331 CATGGCATTAATCACGGGCTA 58.497 47.619 0.00 0.00 0.00 3.93
79 80 1.321474 CATGGCATTAATCACGGGCT 58.679 50.000 0.00 0.00 0.00 5.19
80 81 0.318955 GCATGGCATTAATCACGGGC 60.319 55.000 0.00 0.00 0.00 6.13
81 82 0.314935 GGCATGGCATTAATCACGGG 59.685 55.000 15.47 0.00 0.00 5.28
82 83 1.001048 CTGGCATGGCATTAATCACGG 60.001 52.381 23.59 3.58 0.00 4.94
83 84 1.601162 GCTGGCATGGCATTAATCACG 60.601 52.381 23.59 9.41 0.00 4.35
84 85 1.269936 GGCTGGCATGGCATTAATCAC 60.270 52.381 23.59 6.34 0.00 3.06
85 86 1.042229 GGCTGGCATGGCATTAATCA 58.958 50.000 23.59 0.00 0.00 2.57
86 87 1.042229 TGGCTGGCATGGCATTAATC 58.958 50.000 23.59 10.78 37.59 1.75
87 88 1.498264 TTGGCTGGCATGGCATTAAT 58.502 45.000 23.59 0.00 42.07 1.40
88 89 1.139256 CATTGGCTGGCATGGCATTAA 59.861 47.619 23.59 17.17 42.07 1.40
89 90 0.753867 CATTGGCTGGCATGGCATTA 59.246 50.000 23.59 9.19 42.07 1.90
90 91 0.978667 TCATTGGCTGGCATGGCATT 60.979 50.000 23.59 2.84 42.07 3.56
91 92 1.382009 TCATTGGCTGGCATGGCAT 60.382 52.632 23.59 4.20 42.07 4.40
92 93 2.037527 TCATTGGCTGGCATGGCA 59.962 55.556 21.97 21.97 40.80 4.92
93 94 2.792947 CCTCATTGGCTGGCATGGC 61.793 63.158 13.29 13.29 0.00 4.40
94 95 2.131709 CCCTCATTGGCTGGCATGG 61.132 63.158 4.22 5.52 0.00 3.66
95 96 1.076559 TCCCTCATTGGCTGGCATG 60.077 57.895 4.22 6.06 0.00 4.06
96 97 1.229359 CTCCCTCATTGGCTGGCAT 59.771 57.895 4.22 0.00 0.00 4.40
97 98 2.679092 CTCCCTCATTGGCTGGCA 59.321 61.111 0.00 0.00 0.00 4.92
98 99 2.123982 CCTCCCTCATTGGCTGGC 60.124 66.667 0.00 0.00 0.00 4.85
99 100 1.530771 CTCCTCCCTCATTGGCTGG 59.469 63.158 0.00 0.00 0.00 4.85
100 101 0.984961 TCCTCCTCCCTCATTGGCTG 60.985 60.000 0.00 0.00 0.00 4.85
101 102 0.253347 TTCCTCCTCCCTCATTGGCT 60.253 55.000 0.00 0.00 0.00 4.75
102 103 0.849417 ATTCCTCCTCCCTCATTGGC 59.151 55.000 0.00 0.00 0.00 4.52
103 104 4.796110 TTAATTCCTCCTCCCTCATTGG 57.204 45.455 0.00 0.00 0.00 3.16
104 105 8.946797 AATAATTAATTCCTCCTCCCTCATTG 57.053 34.615 3.39 0.00 0.00 2.82
106 107 9.411848 AGTAATAATTAATTCCTCCTCCCTCAT 57.588 33.333 3.39 0.00 0.00 2.90
107 108 8.814448 AGTAATAATTAATTCCTCCTCCCTCA 57.186 34.615 3.39 0.00 0.00 3.86
128 129 8.731275 ACAGCAGCACAAATTACATATAGTAA 57.269 30.769 0.00 0.00 46.10 2.24
129 130 9.996554 ATACAGCAGCACAAATTACATATAGTA 57.003 29.630 0.00 0.00 0.00 1.82
130 131 8.908786 ATACAGCAGCACAAATTACATATAGT 57.091 30.769 0.00 0.00 0.00 2.12
131 132 8.992073 TGATACAGCAGCACAAATTACATATAG 58.008 33.333 0.00 0.00 0.00 1.31
132 133 8.900983 TGATACAGCAGCACAAATTACATATA 57.099 30.769 0.00 0.00 0.00 0.86
133 134 7.716560 TCTGATACAGCAGCACAAATTACATAT 59.283 33.333 0.00 0.00 35.86 1.78
134 135 7.047271 TCTGATACAGCAGCACAAATTACATA 58.953 34.615 0.00 0.00 35.86 2.29
135 136 5.882000 TCTGATACAGCAGCACAAATTACAT 59.118 36.000 0.00 0.00 35.86 2.29
136 137 5.244755 TCTGATACAGCAGCACAAATTACA 58.755 37.500 0.00 0.00 35.86 2.41
137 138 5.582269 TCTCTGATACAGCAGCACAAATTAC 59.418 40.000 0.00 0.00 35.86 1.89
138 139 5.733676 TCTCTGATACAGCAGCACAAATTA 58.266 37.500 0.00 0.00 35.86 1.40
139 140 4.582869 TCTCTGATACAGCAGCACAAATT 58.417 39.130 0.00 0.00 35.86 1.82
140 141 4.190001 CTCTCTGATACAGCAGCACAAAT 58.810 43.478 0.00 0.00 35.86 2.32
141 142 3.593096 CTCTCTGATACAGCAGCACAAA 58.407 45.455 0.00 0.00 35.86 2.83
142 143 2.676176 GCTCTCTGATACAGCAGCACAA 60.676 50.000 13.63 0.00 37.20 3.33
143 144 1.134877 GCTCTCTGATACAGCAGCACA 60.135 52.381 13.63 0.00 37.20 4.57
144 145 1.569708 GCTCTCTGATACAGCAGCAC 58.430 55.000 13.63 0.00 37.20 4.40
145 146 0.101939 CGCTCTCTGATACAGCAGCA 59.898 55.000 16.60 0.00 37.13 4.41
146 147 0.597118 CCGCTCTCTGATACAGCAGC 60.597 60.000 0.00 0.00 35.32 5.25
147 148 0.743688 ACCGCTCTCTGATACAGCAG 59.256 55.000 0.00 0.00 37.24 4.24
148 149 1.186200 AACCGCTCTCTGATACAGCA 58.814 50.000 0.00 0.00 32.27 4.41
149 150 3.438297 TTAACCGCTCTCTGATACAGC 57.562 47.619 0.00 0.00 0.00 4.40
150 151 6.016192 TCCTAATTAACCGCTCTCTGATACAG 60.016 42.308 0.00 0.00 0.00 2.74
151 152 5.831525 TCCTAATTAACCGCTCTCTGATACA 59.168 40.000 0.00 0.00 0.00 2.29
152 153 6.328641 TCCTAATTAACCGCTCTCTGATAC 57.671 41.667 0.00 0.00 0.00 2.24
153 154 6.719829 TGATCCTAATTAACCGCTCTCTGATA 59.280 38.462 0.00 0.00 0.00 2.15
154 155 5.540337 TGATCCTAATTAACCGCTCTCTGAT 59.460 40.000 0.00 0.00 0.00 2.90
155 156 4.893524 TGATCCTAATTAACCGCTCTCTGA 59.106 41.667 0.00 0.00 0.00 3.27
156 157 5.201713 TGATCCTAATTAACCGCTCTCTG 57.798 43.478 0.00 0.00 0.00 3.35
157 158 5.871396 TTGATCCTAATTAACCGCTCTCT 57.129 39.130 0.00 0.00 0.00 3.10
158 159 5.409826 CCATTGATCCTAATTAACCGCTCTC 59.590 44.000 0.00 0.00 0.00 3.20
159 160 5.308825 CCATTGATCCTAATTAACCGCTCT 58.691 41.667 0.00 0.00 0.00 4.09
160 161 4.455877 CCCATTGATCCTAATTAACCGCTC 59.544 45.833 0.00 0.00 0.00 5.03
161 162 4.398319 CCCATTGATCCTAATTAACCGCT 58.602 43.478 0.00 0.00 0.00 5.52
162 163 3.057526 GCCCATTGATCCTAATTAACCGC 60.058 47.826 0.00 0.00 0.00 5.68
163 164 3.188460 CGCCCATTGATCCTAATTAACCG 59.812 47.826 0.00 0.00 0.00 4.44
164 165 3.057526 GCGCCCATTGATCCTAATTAACC 60.058 47.826 0.00 0.00 0.00 2.85
165 166 3.057526 GGCGCCCATTGATCCTAATTAAC 60.058 47.826 18.11 0.00 0.00 2.01
166 167 3.153919 GGCGCCCATTGATCCTAATTAA 58.846 45.455 18.11 0.00 0.00 1.40
167 168 2.790433 GGCGCCCATTGATCCTAATTA 58.210 47.619 18.11 0.00 0.00 1.40
168 169 1.620822 GGCGCCCATTGATCCTAATT 58.379 50.000 18.11 0.00 0.00 1.40
169 170 0.606401 CGGCGCCCATTGATCCTAAT 60.606 55.000 23.46 0.00 0.00 1.73
170 171 1.227823 CGGCGCCCATTGATCCTAA 60.228 57.895 23.46 0.00 0.00 2.69
171 172 2.425592 CGGCGCCCATTGATCCTA 59.574 61.111 23.46 0.00 0.00 2.94
185 186 1.495951 CTTAATATTCGGCGGCGGC 59.504 57.895 31.73 24.75 38.90 6.53
186 187 0.320073 TCCTTAATATTCGGCGGCGG 60.320 55.000 31.73 13.01 0.00 6.13
187 188 1.068474 CTCCTTAATATTCGGCGGCG 58.932 55.000 27.15 27.15 0.00 6.46
188 189 1.001633 TCCTCCTTAATATTCGGCGGC 59.998 52.381 7.21 0.00 0.00 6.53
189 190 3.611766 ATCCTCCTTAATATTCGGCGG 57.388 47.619 7.21 6.45 0.00 6.13
190 191 5.334879 CCAAAATCCTCCTTAATATTCGGCG 60.335 44.000 0.00 0.00 0.00 6.46
191 192 5.564848 GCCAAAATCCTCCTTAATATTCGGC 60.565 44.000 0.00 0.00 0.00 5.54
192 193 5.048013 GGCCAAAATCCTCCTTAATATTCGG 60.048 44.000 0.00 0.00 0.00 4.30
193 194 5.048013 GGGCCAAAATCCTCCTTAATATTCG 60.048 44.000 4.39 0.00 0.00 3.34
194 195 5.246203 GGGGCCAAAATCCTCCTTAATATTC 59.754 44.000 4.39 0.00 0.00 1.75
195 196 5.155161 GGGGCCAAAATCCTCCTTAATATT 58.845 41.667 4.39 0.00 0.00 1.28
196 197 4.171841 TGGGGCCAAAATCCTCCTTAATAT 59.828 41.667 4.39 0.00 0.00 1.28
197 198 3.533907 TGGGGCCAAAATCCTCCTTAATA 59.466 43.478 4.39 0.00 0.00 0.98
198 199 2.317594 TGGGGCCAAAATCCTCCTTAAT 59.682 45.455 4.39 0.00 0.00 1.40
199 200 1.719378 TGGGGCCAAAATCCTCCTTAA 59.281 47.619 4.39 0.00 0.00 1.85
200 201 1.388174 TGGGGCCAAAATCCTCCTTA 58.612 50.000 4.39 0.00 0.00 2.69
201 202 0.718408 ATGGGGCCAAAATCCTCCTT 59.282 50.000 4.39 0.00 0.00 3.36
202 203 1.619298 TATGGGGCCAAAATCCTCCT 58.381 50.000 4.39 0.00 0.00 3.69
203 204 2.110721 AGATATGGGGCCAAAATCCTCC 59.889 50.000 4.39 0.00 0.00 4.30
204 205 3.532641 AGATATGGGGCCAAAATCCTC 57.467 47.619 4.39 0.00 0.00 3.71
205 206 3.999764 AAGATATGGGGCCAAAATCCT 57.000 42.857 4.39 0.00 0.00 3.24
206 207 5.104569 TCAAAAAGATATGGGGCCAAAATCC 60.105 40.000 4.39 0.00 0.00 3.01
207 208 5.988287 TCAAAAAGATATGGGGCCAAAATC 58.012 37.500 4.39 4.41 0.00 2.17
208 209 5.488561 ACTCAAAAAGATATGGGGCCAAAAT 59.511 36.000 4.39 0.00 0.00 1.82
209 210 4.843516 ACTCAAAAAGATATGGGGCCAAAA 59.156 37.500 4.39 0.00 0.00 2.44
210 211 4.424842 ACTCAAAAAGATATGGGGCCAAA 58.575 39.130 4.39 0.00 0.00 3.28
211 212 4.059773 ACTCAAAAAGATATGGGGCCAA 57.940 40.909 4.39 0.00 0.00 4.52
212 213 3.756082 ACTCAAAAAGATATGGGGCCA 57.244 42.857 4.39 0.00 0.00 5.36
213 214 5.178061 CAAAACTCAAAAAGATATGGGGCC 58.822 41.667 0.00 0.00 0.00 5.80
214 215 5.046663 TCCAAAACTCAAAAAGATATGGGGC 60.047 40.000 0.00 0.00 0.00 5.80
215 216 6.603940 TCCAAAACTCAAAAAGATATGGGG 57.396 37.500 0.00 0.00 0.00 4.96
216 217 7.043565 CCATCCAAAACTCAAAAAGATATGGG 58.956 38.462 0.00 0.00 0.00 4.00
217 218 7.839907 TCCATCCAAAACTCAAAAAGATATGG 58.160 34.615 0.00 0.00 0.00 2.74
218 219 9.709495 TTTCCATCCAAAACTCAAAAAGATATG 57.291 29.630 0.00 0.00 0.00 1.78
219 220 9.710900 GTTTCCATCCAAAACTCAAAAAGATAT 57.289 29.630 0.00 0.00 34.51 1.63
220 221 7.865385 CGTTTCCATCCAAAACTCAAAAAGATA 59.135 33.333 0.00 0.00 35.04 1.98
221 222 6.701400 CGTTTCCATCCAAAACTCAAAAAGAT 59.299 34.615 0.00 0.00 35.04 2.40
222 223 6.039616 CGTTTCCATCCAAAACTCAAAAAGA 58.960 36.000 0.00 0.00 35.04 2.52
223 224 5.810074 ACGTTTCCATCCAAAACTCAAAAAG 59.190 36.000 0.00 0.00 35.04 2.27
224 225 5.725362 ACGTTTCCATCCAAAACTCAAAAA 58.275 33.333 0.00 0.00 35.04 1.94
225 226 5.126384 AGACGTTTCCATCCAAAACTCAAAA 59.874 36.000 0.00 0.00 35.04 2.44
226 227 4.642885 AGACGTTTCCATCCAAAACTCAAA 59.357 37.500 0.00 0.00 35.04 2.69
227 228 4.036262 CAGACGTTTCCATCCAAAACTCAA 59.964 41.667 0.00 0.00 35.04 3.02
228 229 3.563808 CAGACGTTTCCATCCAAAACTCA 59.436 43.478 0.00 0.00 35.04 3.41
229 230 3.813166 TCAGACGTTTCCATCCAAAACTC 59.187 43.478 0.00 0.00 35.04 3.01
230 231 3.564225 GTCAGACGTTTCCATCCAAAACT 59.436 43.478 0.00 0.00 35.04 2.66
248 249 1.153289 CGAGGGGCCAATCAGTCAG 60.153 63.158 4.39 0.00 0.00 3.51
261 262 2.417516 CCTACGCATCCACGAGGG 59.582 66.667 0.00 0.00 36.70 4.30
286 287 2.130272 ATGTAGAGACGACAGAGGCA 57.870 50.000 0.00 0.00 0.00 4.75
319 324 0.809636 TGTGACGAGTTGTGTGCTGG 60.810 55.000 0.00 0.00 0.00 4.85
322 327 0.937304 ATGTGTGACGAGTTGTGTGC 59.063 50.000 0.00 0.00 0.00 4.57
334 339 4.258543 GACTCGGGGATAAAAATGTGTGA 58.741 43.478 0.00 0.00 0.00 3.58
341 346 3.267291 TGATTGGGACTCGGGGATAAAAA 59.733 43.478 0.00 0.00 0.00 1.94
342 347 2.847449 TGATTGGGACTCGGGGATAAAA 59.153 45.455 0.00 0.00 0.00 1.52
343 348 2.483547 TGATTGGGACTCGGGGATAAA 58.516 47.619 0.00 0.00 0.00 1.40
344 349 2.184088 TGATTGGGACTCGGGGATAA 57.816 50.000 0.00 0.00 0.00 1.75
345 350 2.184088 TTGATTGGGACTCGGGGATA 57.816 50.000 0.00 0.00 0.00 2.59
346 351 1.212935 CTTTGATTGGGACTCGGGGAT 59.787 52.381 0.00 0.00 0.00 3.85
347 352 0.618458 CTTTGATTGGGACTCGGGGA 59.382 55.000 0.00 0.00 0.00 4.81
348 353 1.032114 GCTTTGATTGGGACTCGGGG 61.032 60.000 0.00 0.00 0.00 5.73
349 354 0.035056 AGCTTTGATTGGGACTCGGG 60.035 55.000 0.00 0.00 0.00 5.14
350 355 1.089920 CAGCTTTGATTGGGACTCGG 58.910 55.000 0.00 0.00 0.00 4.63
351 356 2.005451 CTCAGCTTTGATTGGGACTCG 58.995 52.381 0.00 0.00 0.00 4.18
352 357 3.064900 ACTCAGCTTTGATTGGGACTC 57.935 47.619 0.00 0.00 0.00 3.36
353 358 3.584848 ACTACTCAGCTTTGATTGGGACT 59.415 43.478 0.00 0.00 0.00 3.85
354 359 3.944087 ACTACTCAGCTTTGATTGGGAC 58.056 45.455 0.00 0.00 0.00 4.46
366 371 6.538021 TGCAACTAGTACTACTACTACTCAGC 59.462 42.308 0.00 0.00 34.79 4.26
368 373 7.498239 CCATGCAACTAGTACTACTACTACTCA 59.502 40.741 0.00 0.00 34.79 3.41
372 377 5.237996 CGCCATGCAACTAGTACTACTACTA 59.762 44.000 0.00 0.00 34.79 1.82
373 378 4.036498 CGCCATGCAACTAGTACTACTACT 59.964 45.833 0.00 0.00 37.04 2.57
374 379 4.201990 ACGCCATGCAACTAGTACTACTAC 60.202 45.833 0.00 0.00 0.00 2.73
375 380 3.949754 ACGCCATGCAACTAGTACTACTA 59.050 43.478 0.00 0.00 0.00 1.82
376 381 2.758979 ACGCCATGCAACTAGTACTACT 59.241 45.455 0.00 0.00 0.00 2.57
377 382 2.858344 CACGCCATGCAACTAGTACTAC 59.142 50.000 0.00 0.00 0.00 2.73
378 383 3.159353 CACGCCATGCAACTAGTACTA 57.841 47.619 1.89 1.89 0.00 1.82
379 384 2.010145 CACGCCATGCAACTAGTACT 57.990 50.000 0.00 0.00 0.00 2.73
516 525 4.500116 GAGAGAGACGGCCGCCAC 62.500 72.222 28.58 14.21 0.00 5.01
522 531 4.539881 GTCCGCGAGAGAGACGGC 62.540 72.222 8.23 0.00 46.49 5.68
546 555 0.462581 TGTGGATCTCATCTTGCGGC 60.463 55.000 0.00 0.00 0.00 6.53
548 557 1.293924 GGTGTGGATCTCATCTTGCG 58.706 55.000 0.00 0.00 0.00 4.85
549 558 1.211457 AGGGTGTGGATCTCATCTTGC 59.789 52.381 0.00 0.00 0.00 4.01
551 560 1.211457 GCAGGGTGTGGATCTCATCTT 59.789 52.381 0.00 0.00 0.00 2.40
552 561 0.835941 GCAGGGTGTGGATCTCATCT 59.164 55.000 0.00 0.00 0.00 2.90
554 563 1.918253 GGCAGGGTGTGGATCTCAT 59.082 57.895 0.00 0.00 0.00 2.90
555 564 2.659063 CGGCAGGGTGTGGATCTCA 61.659 63.158 0.00 0.00 0.00 3.27
556 565 2.187946 CGGCAGGGTGTGGATCTC 59.812 66.667 0.00 0.00 0.00 2.75
557 566 2.607750 ACGGCAGGGTGTGGATCT 60.608 61.111 0.00 0.00 0.00 2.75
558 567 2.436646 CACGGCAGGGTGTGGATC 60.437 66.667 0.00 0.00 33.24 3.36
559 568 4.722700 GCACGGCAGGGTGTGGAT 62.723 66.667 4.12 0.00 40.08 3.41
586 595 1.268899 GCACACTCAGATTTTGCAGCT 59.731 47.619 0.00 0.00 33.24 4.24
587 596 1.668047 GGCACACTCAGATTTTGCAGC 60.668 52.381 1.75 0.00 34.76 5.25
588 597 1.400629 CGGCACACTCAGATTTTGCAG 60.401 52.381 1.75 0.00 34.76 4.41
589 598 0.592637 CGGCACACTCAGATTTTGCA 59.407 50.000 1.75 0.00 34.76 4.08
590 599 0.593128 ACGGCACACTCAGATTTTGC 59.407 50.000 0.00 0.00 0.00 3.68
591 600 2.662791 CGAACGGCACACTCAGATTTTG 60.663 50.000 0.00 0.00 0.00 2.44
592 601 1.531149 CGAACGGCACACTCAGATTTT 59.469 47.619 0.00 0.00 0.00 1.82
593 602 1.148310 CGAACGGCACACTCAGATTT 58.852 50.000 0.00 0.00 0.00 2.17
594 603 0.317160 TCGAACGGCACACTCAGATT 59.683 50.000 0.00 0.00 0.00 2.40
595 604 0.388649 GTCGAACGGCACACTCAGAT 60.389 55.000 0.00 0.00 0.00 2.90
596 605 1.007734 GTCGAACGGCACACTCAGA 60.008 57.895 0.00 0.00 0.00 3.27
597 606 0.240145 TAGTCGAACGGCACACTCAG 59.760 55.000 1.04 0.00 0.00 3.35
598 607 0.240145 CTAGTCGAACGGCACACTCA 59.760 55.000 1.04 0.00 0.00 3.41
599 608 0.240411 ACTAGTCGAACGGCACACTC 59.760 55.000 1.04 0.00 0.00 3.51
600 609 0.240411 GACTAGTCGAACGGCACACT 59.760 55.000 7.22 0.00 0.00 3.55
601 610 0.731855 GGACTAGTCGAACGGCACAC 60.732 60.000 16.56 0.00 0.00 3.82
602 611 1.174078 TGGACTAGTCGAACGGCACA 61.174 55.000 16.56 3.62 0.00 4.57
603 612 0.731855 GTGGACTAGTCGAACGGCAC 60.732 60.000 16.56 13.18 0.00 5.01
604 613 1.582968 GTGGACTAGTCGAACGGCA 59.417 57.895 16.56 5.06 0.00 5.69
605 614 1.513586 CGTGGACTAGTCGAACGGC 60.514 63.158 28.62 12.71 36.98 5.68
606 615 1.513586 GCGTGGACTAGTCGAACGG 60.514 63.158 32.93 22.09 39.31 4.44
607 616 1.063951 GTGCGTGGACTAGTCGAACG 61.064 60.000 30.47 30.47 40.77 3.95
608 617 1.063951 CGTGCGTGGACTAGTCGAAC 61.064 60.000 16.56 15.31 0.00 3.95
609 618 1.208358 CGTGCGTGGACTAGTCGAA 59.792 57.895 16.56 4.83 0.00 3.71
610 619 2.683859 CCGTGCGTGGACTAGTCGA 61.684 63.158 16.56 10.30 0.00 4.20
611 620 2.202440 CCGTGCGTGGACTAGTCG 60.202 66.667 16.56 7.42 0.00 4.18
612 621 2.181021 CCCGTGCGTGGACTAGTC 59.819 66.667 14.87 14.87 0.00 2.59
613 622 2.282674 TCCCGTGCGTGGACTAGT 60.283 61.111 0.00 0.00 0.00 2.57
618 627 4.595538 GTGTGTCCCGTGCGTGGA 62.596 66.667 0.00 0.00 0.00 4.02
623 632 4.307908 GTTGCGTGTGTCCCGTGC 62.308 66.667 0.00 0.00 0.00 5.34
624 633 3.645975 GGTTGCGTGTGTCCCGTG 61.646 66.667 0.00 0.00 0.00 4.94
625 634 3.683966 TTGGTTGCGTGTGTCCCGT 62.684 57.895 0.00 0.00 0.00 5.28
626 635 2.387125 CTTTGGTTGCGTGTGTCCCG 62.387 60.000 0.00 0.00 0.00 5.14
627 636 1.358759 CTTTGGTTGCGTGTGTCCC 59.641 57.895 0.00 0.00 0.00 4.46
628 637 1.299089 GCTTTGGTTGCGTGTGTCC 60.299 57.895 0.00 0.00 0.00 4.02
629 638 0.179150 TTGCTTTGGTTGCGTGTGTC 60.179 50.000 0.00 0.00 0.00 3.67
630 639 0.179140 CTTGCTTTGGTTGCGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
631 640 1.481819 GCTTGCTTTGGTTGCGTGTG 61.482 55.000 0.00 0.00 0.00 3.82
632 641 1.226945 GCTTGCTTTGGTTGCGTGT 60.227 52.632 0.00 0.00 0.00 4.49
633 642 0.528249 AAGCTTGCTTTGGTTGCGTG 60.528 50.000 0.00 0.00 0.00 5.34
634 643 0.528249 CAAGCTTGCTTTGGTTGCGT 60.528 50.000 14.65 0.00 36.38 5.24
635 644 2.218934 CAAGCTTGCTTTGGTTGCG 58.781 52.632 14.65 0.00 36.38 4.85
646 655 3.793144 GTCGCCGGAGCAAGCTTG 61.793 66.667 22.44 22.44 39.83 4.01
706 715 4.050934 GTTTTGAAGGCGGGCGGG 62.051 66.667 0.00 0.00 0.00 6.13
707 716 4.050934 GGTTTTGAAGGCGGGCGG 62.051 66.667 0.00 0.00 0.00 6.13
708 717 4.050934 GGGTTTTGAAGGCGGGCG 62.051 66.667 0.00 0.00 0.00 6.13
709 718 4.050934 CGGGTTTTGAAGGCGGGC 62.051 66.667 0.00 0.00 0.00 6.13
710 719 2.596338 ACGGGTTTTGAAGGCGGG 60.596 61.111 0.00 0.00 0.00 6.13
747 756 1.076549 TTTTGAAGGCTGCCGGGAT 59.923 52.632 13.96 0.63 0.00 3.85
855 907 2.896685 AGGTCTGTCTTTCTGTGAGGAG 59.103 50.000 0.00 0.00 0.00 3.69
856 908 2.894126 GAGGTCTGTCTTTCTGTGAGGA 59.106 50.000 0.00 0.00 0.00 3.71
857 909 2.028567 GGAGGTCTGTCTTTCTGTGAGG 60.029 54.545 0.00 0.00 0.00 3.86
858 910 2.028567 GGGAGGTCTGTCTTTCTGTGAG 60.029 54.545 0.00 0.00 0.00 3.51
859 911 1.971357 GGGAGGTCTGTCTTTCTGTGA 59.029 52.381 0.00 0.00 0.00 3.58
860 912 1.974236 AGGGAGGTCTGTCTTTCTGTG 59.026 52.381 0.00 0.00 0.00 3.66
864 916 7.565680 TGATTTTATAGGGAGGTCTGTCTTTC 58.434 38.462 0.00 0.00 0.00 2.62
888 943 0.318784 GCGCTAGGGTTCTACCGATG 60.319 60.000 8.77 0.00 39.83 3.84
912 967 1.127343 GGAATGGAGAGAGGAGGGTG 58.873 60.000 0.00 0.00 0.00 4.61
913 968 0.397816 CGGAATGGAGAGAGGAGGGT 60.398 60.000 0.00 0.00 0.00 4.34
914 969 1.753368 GCGGAATGGAGAGAGGAGGG 61.753 65.000 0.00 0.00 0.00 4.30
961 1016 4.899239 GATCTGGTGGCGGGCGAG 62.899 72.222 0.00 0.00 0.00 5.03
987 1054 4.299796 GCCATGGTGGGTGGTGGT 62.300 66.667 14.67 0.00 38.19 4.16
996 1063 0.960364 GTGTGGGTGTAGCCATGGTG 60.960 60.000 14.67 0.00 39.65 4.17
997 1064 1.378762 GTGTGGGTGTAGCCATGGT 59.621 57.895 14.67 2.69 39.65 3.55
1004 1074 1.420138 ACTTGAAGGGTGTGGGTGTAG 59.580 52.381 0.00 0.00 0.00 2.74
1015 1085 0.790814 GACGCGAAGAACTTGAAGGG 59.209 55.000 15.93 0.00 0.00 3.95
1020 1090 1.773496 GTCGGACGCGAAGAACTTG 59.227 57.895 15.93 0.00 0.00 3.16
1131 1201 2.437359 CCCTTCAGCTTGGCCTCG 60.437 66.667 3.32 0.00 0.00 4.63
1136 1206 1.000396 CCCTTCCCCTTCAGCTTGG 60.000 63.158 0.00 0.00 0.00 3.61
1137 1207 1.000396 CCCCTTCCCCTTCAGCTTG 60.000 63.158 0.00 0.00 0.00 4.01
1143 1213 3.421386 GCCTCCCCCTTCCCCTTC 61.421 72.222 0.00 0.00 0.00 3.46
1230 1300 3.479269 GTCTTCTTGGCGACGGCG 61.479 66.667 17.16 6.12 41.24 6.46
1310 1380 2.587194 GCAGATCCACGAGCGCAT 60.587 61.111 11.47 0.00 0.00 4.73
1326 1396 3.760035 TGGCCGTCCTTCTCGAGC 61.760 66.667 7.81 0.00 0.00 5.03
1373 1443 0.321653 AAGGACCTTAGCTGCGGTTG 60.322 55.000 4.44 0.00 32.62 3.77
1380 1450 0.614979 TGGCGAGAAGGACCTTAGCT 60.615 55.000 21.02 10.86 0.00 3.32
1452 1522 3.294493 GCCTTGGCGAAGTTGGCA 61.294 61.111 12.18 4.98 42.79 4.92
1455 1525 2.256461 GCAGCCTTGGCGAAGTTG 59.744 61.111 7.74 6.76 0.00 3.16
1456 1526 2.985847 GGCAGCCTTGGCGAAGTT 60.986 61.111 3.29 0.00 40.30 2.66
1498 1568 3.257624 TCCCAGGAAAAGACGTAGAAGTC 59.742 47.826 0.00 0.00 41.23 3.01
1503 1573 2.931320 GCACTCCCAGGAAAAGACGTAG 60.931 54.545 0.00 0.00 0.00 3.51
1512 1582 1.371183 CTCAACGCACTCCCAGGAA 59.629 57.895 0.00 0.00 0.00 3.36
1522 1592 0.608856 ATGTTGGATGGCTCAACGCA 60.609 50.000 11.82 0.00 45.22 5.24
1569 1643 3.440173 AGACGGACAGGCAATTTGTAATG 59.560 43.478 0.00 0.00 0.00 1.90
1604 1679 4.286707 TCTAACTAGCACTCCTATGGCAA 58.713 43.478 0.00 0.00 0.00 4.52
1644 1719 6.648879 AATTTAGCATAACCACACTGTTGT 57.351 33.333 0.00 0.00 35.84 3.32
1668 1743 2.698274 CCAAACTACCTTGGGTTTGCTT 59.302 45.455 11.54 0.00 46.09 3.91
1670 1745 1.270094 GCCAAACTACCTTGGGTTTGC 60.270 52.381 11.54 5.56 46.09 3.68
1671 1746 2.035632 TGCCAAACTACCTTGGGTTTG 58.964 47.619 10.42 10.42 45.21 2.93
1673 1748 2.110011 AGATGCCAAACTACCTTGGGTT 59.890 45.455 4.63 0.00 45.21 4.11
1741 2040 3.119459 GGAGAGCTACAGTTTCATCGACA 60.119 47.826 0.00 0.00 0.00 4.35
1842 2141 3.442625 CAGACCATGATGCTGTGTCAAAT 59.557 43.478 0.00 0.00 0.00 2.32
1925 2224 8.417106 CAGGCTACATCTAGAATAACTGAGAAA 58.583 37.037 0.00 0.00 0.00 2.52
1965 2264 4.069304 TCCACATTGAAAGTAAGAACCCG 58.931 43.478 0.00 0.00 0.00 5.28
1966 2265 5.278808 GGTTCCACATTGAAAGTAAGAACCC 60.279 44.000 17.19 6.16 41.30 4.11
2079 2378 5.201713 TGATGAGTAACATAGCAGGCTAC 57.798 43.478 2.62 0.00 39.56 3.58
2103 2402 7.275560 ACAACTTTGCACATTGAAAGTAAGAAC 59.724 33.333 10.02 0.00 40.68 3.01
2125 2424 5.961395 TGACTGAAACGTCTAAAGACAAC 57.039 39.130 10.55 0.00 44.99 3.32
2170 2469 5.048013 ACCTAAAATAACTGAAGCTGCAACC 60.048 40.000 1.02 0.00 0.00 3.77
2202 2501 7.055667 ACACGAATCTGATGATTACCATAGT 57.944 36.000 0.00 0.00 42.43 2.12
2211 2510 7.025365 CACATTGAAAACACGAATCTGATGAT 58.975 34.615 0.00 0.00 33.70 2.45
2219 2518 5.523188 ACATTTGCACATTGAAAACACGAAT 59.477 32.000 0.00 0.00 0.00 3.34
2225 2524 5.971895 AGACACATTTGCACATTGAAAAC 57.028 34.783 0.00 0.00 0.00 2.43
2241 2540 6.017934 GCTTGACTGAAACATCTAAAGACACA 60.018 38.462 0.00 0.00 0.00 3.72
2341 2895 2.914861 CGCATCAAACACAATCGACAA 58.085 42.857 0.00 0.00 0.00 3.18
2348 2902 0.101939 TTGCTGCGCATCAAACACAA 59.898 45.000 23.19 10.44 38.76 3.33
2352 2906 1.005294 CTGGTTGCTGCGCATCAAAC 61.005 55.000 29.84 29.84 38.76 2.93
2361 2915 1.288127 CCTTCTTGCTGGTTGCTGC 59.712 57.895 0.00 0.00 43.37 5.25
2392 2946 3.641046 TCTCCCATCTCTTCTCTCCTTG 58.359 50.000 0.00 0.00 0.00 3.61
2400 2954 3.625649 AGCTGTTTCTCCCATCTCTTC 57.374 47.619 0.00 0.00 0.00 2.87
2401 2955 4.100373 AGTAGCTGTTTCTCCCATCTCTT 58.900 43.478 0.00 0.00 0.00 2.85
2402 2956 3.718723 AGTAGCTGTTTCTCCCATCTCT 58.281 45.455 0.00 0.00 0.00 3.10
2423 2977 2.045045 CCCAATGAGCGCCTCCAA 60.045 61.111 2.29 0.00 0.00 3.53
2432 2986 4.431131 ACCGCTGCCCCCAATGAG 62.431 66.667 0.00 0.00 0.00 2.90
2492 3046 0.804989 GCCATTTCCCTGTTGACGAG 59.195 55.000 0.00 0.00 0.00 4.18
2494 3048 0.893270 TGGCCATTTCCCTGTTGACG 60.893 55.000 0.00 0.00 0.00 4.35
2495 3049 1.337118 TTGGCCATTTCCCTGTTGAC 58.663 50.000 6.09 0.00 0.00 3.18
2501 3055 1.278537 CCATGTTTGGCCATTTCCCT 58.721 50.000 6.09 0.00 35.85 4.20
2524 3078 7.495606 TCTGCAATATTGTTGATCGACATAACT 59.504 33.333 16.62 5.18 0.00 2.24
2527 3081 7.784633 TTCTGCAATATTGTTGATCGACATA 57.215 32.000 16.62 11.08 0.00 2.29
2545 3099 1.442769 GCGACCTCAAGATTTCTGCA 58.557 50.000 0.00 0.00 0.00 4.41
2567 3121 1.275666 TGAGGTGACCCGACATCAAT 58.724 50.000 0.00 0.00 33.89 2.57
2569 3123 0.320374 GTTGAGGTGACCCGACATCA 59.680 55.000 0.00 0.00 34.96 3.07
2599 3153 0.916086 TGGTAACGAGATGGGGCAAT 59.084 50.000 0.00 0.00 42.51 3.56
2600 3154 0.916086 ATGGTAACGAGATGGGGCAA 59.084 50.000 0.00 0.00 42.51 4.52
2611 3165 1.009829 GCTGAGGAGCAATGGTAACG 58.990 55.000 0.00 0.00 45.46 3.18
2626 3180 4.088351 TCGGGGATGGGGAGCTGA 62.088 66.667 0.00 0.00 0.00 4.26
2679 3233 0.253044 GACTTGAGGTATGGCTGGCA 59.747 55.000 6.31 6.31 0.00 4.92
2722 3276 3.302347 CTTGGCGACCTCGGAAGCT 62.302 63.158 0.00 0.00 40.23 3.74
2734 3288 4.785453 GGCTGGACCTCCTTGGCG 62.785 72.222 0.00 0.00 40.22 5.69
2763 3317 2.211468 GATGTCCTTCCACCCACCCC 62.211 65.000 0.00 0.00 0.00 4.95
2795 3349 2.285256 CGATTGCAGTAGTCACGATTGC 60.285 50.000 0.00 0.00 35.42 3.56
2796 3350 2.282555 CCGATTGCAGTAGTCACGATTG 59.717 50.000 0.00 0.00 0.00 2.67
2810 3364 2.709475 GACGCACCATCCGATTGC 59.291 61.111 0.00 0.00 0.00 3.56
2825 3379 4.195334 ATCCAGCCCCATGCCGAC 62.195 66.667 0.00 0.00 42.71 4.79
2826 3380 4.193893 CATCCAGCCCCATGCCGA 62.194 66.667 0.00 0.00 42.71 5.54
2852 3406 1.135053 GCGGTAGTCTTTGACCTCCTC 60.135 57.143 0.00 0.00 33.21 3.71
2881 3435 0.689623 AGAACTGTCCCAGCTTGGAG 59.310 55.000 6.82 0.00 40.96 3.86
2897 3451 0.898789 GGGGTCTCGTCCAGTGAGAA 60.899 60.000 0.00 0.00 43.65 2.87
2955 3509 0.955428 TTCCCACATGCTTGAGACGC 60.955 55.000 6.60 0.00 0.00 5.19
2968 3526 6.750963 CGTCTACTGTTTCTATTACTTCCCAC 59.249 42.308 0.00 0.00 0.00 4.61
2985 3543 6.699204 AGCAAAATGATCATAGACGTCTACTG 59.301 38.462 26.87 22.73 0.00 2.74
3037 3595 2.483876 CAGTTCTGCCGACTTCAAGAA 58.516 47.619 0.00 0.00 0.00 2.52
3047 3605 1.293924 CTCCATTAGCAGTTCTGCCG 58.706 55.000 19.28 7.45 34.90 5.69
3060 3618 5.475719 CATCAACATCACAAAAGCTCCATT 58.524 37.500 0.00 0.00 0.00 3.16
3063 3621 3.057033 AGCATCAACATCACAAAAGCTCC 60.057 43.478 0.00 0.00 0.00 4.70
3064 3622 4.170292 AGCATCAACATCACAAAAGCTC 57.830 40.909 0.00 0.00 0.00 4.09
3090 3648 0.176680 ACGCCTAGTGCTTCATCAGG 59.823 55.000 2.39 0.00 38.05 3.86
3131 3689 1.080230 CGCAGGTCAGGAGACACAG 60.080 63.158 0.00 0.00 46.80 3.66
3165 3723 4.098501 GCTTTAATTAGCAGTTCTGCCCAT 59.901 41.667 19.28 10.08 40.89 4.00
3174 3732 3.127030 GCACGGAAGCTTTAATTAGCAGT 59.873 43.478 0.00 0.00 43.68 4.40
3176 3734 3.126858 CAGCACGGAAGCTTTAATTAGCA 59.873 43.478 0.00 0.00 43.70 3.49
3177 3735 3.127030 ACAGCACGGAAGCTTTAATTAGC 59.873 43.478 0.00 0.85 43.70 3.09
3178 3736 4.946784 ACAGCACGGAAGCTTTAATTAG 57.053 40.909 0.00 0.00 43.70 1.73
3179 3737 4.757657 TCAACAGCACGGAAGCTTTAATTA 59.242 37.500 0.00 0.00 43.70 1.40
3180 3738 3.568007 TCAACAGCACGGAAGCTTTAATT 59.432 39.130 0.00 0.00 43.70 1.40
3181 3739 3.146066 TCAACAGCACGGAAGCTTTAAT 58.854 40.909 0.00 0.00 43.70 1.40
3182 3740 2.566913 TCAACAGCACGGAAGCTTTAA 58.433 42.857 0.00 0.00 43.70 1.52
3183 3741 2.248280 TCAACAGCACGGAAGCTTTA 57.752 45.000 0.00 0.00 43.70 1.85
3184 3742 1.267806 CATCAACAGCACGGAAGCTTT 59.732 47.619 0.00 0.00 43.70 3.51
3185 3743 0.877071 CATCAACAGCACGGAAGCTT 59.123 50.000 0.00 0.00 43.70 3.74
3187 3745 0.593128 AACATCAACAGCACGGAAGC 59.407 50.000 0.00 0.00 0.00 3.86
3188 3746 1.069022 CCAACATCAACAGCACGGAAG 60.069 52.381 0.00 0.00 0.00 3.46
3189 3747 0.950836 CCAACATCAACAGCACGGAA 59.049 50.000 0.00 0.00 0.00 4.30
3190 3748 1.514678 GCCAACATCAACAGCACGGA 61.515 55.000 0.00 0.00 0.00 4.69
3191 3749 1.081242 GCCAACATCAACAGCACGG 60.081 57.895 0.00 0.00 0.00 4.94
3192 3750 0.241749 ATGCCAACATCAACAGCACG 59.758 50.000 0.00 0.00 36.06 5.34
3193 3751 3.119388 ACATATGCCAACATCAACAGCAC 60.119 43.478 1.58 0.00 37.74 4.40
3216 3774 3.671971 CGAAACAAACACAGGACAAGCAA 60.672 43.478 0.00 0.00 0.00 3.91
3223 3781 2.420722 GACCAACGAAACAAACACAGGA 59.579 45.455 0.00 0.00 0.00 3.86
3264 3822 1.003116 CACAAAGAGCACAGTGAGCAC 60.003 52.381 15.15 8.57 33.99 4.40
3295 3853 0.814010 AATGGACATTACCGCCTCGC 60.814 55.000 0.00 0.00 0.00 5.03
3296 3854 1.217882 GAATGGACATTACCGCCTCG 58.782 55.000 0.00 0.00 0.00 4.63
3297 3855 1.594331 GGAATGGACATTACCGCCTC 58.406 55.000 0.00 0.00 0.00 4.70
3298 3856 0.182775 GGGAATGGACATTACCGCCT 59.817 55.000 10.38 0.00 41.60 5.52
3299 3857 2.715536 GGGAATGGACATTACCGCC 58.284 57.895 10.38 1.82 41.60 6.13
3303 3861 4.236527 AGGAACAGGGAATGGACATTAC 57.763 45.455 0.00 0.00 0.00 1.89
3304 3862 5.036916 ACTAGGAACAGGGAATGGACATTA 58.963 41.667 0.00 0.00 0.00 1.90
3305 3863 3.852578 ACTAGGAACAGGGAATGGACATT 59.147 43.478 0.00 0.00 0.00 2.71
3306 3864 3.464828 ACTAGGAACAGGGAATGGACAT 58.535 45.455 0.00 0.00 0.00 3.06
3307 3865 2.915869 ACTAGGAACAGGGAATGGACA 58.084 47.619 0.00 0.00 0.00 4.02
3308 3866 4.302559 AAACTAGGAACAGGGAATGGAC 57.697 45.455 0.00 0.00 0.00 4.02
3309 3867 6.353602 GGAATAAACTAGGAACAGGGAATGGA 60.354 42.308 0.00 0.00 0.00 3.41
3310 3868 5.828328 GGAATAAACTAGGAACAGGGAATGG 59.172 44.000 0.00 0.00 0.00 3.16
3311 3869 6.663734 AGGAATAAACTAGGAACAGGGAATG 58.336 40.000 0.00 0.00 0.00 2.67
3312 3870 6.910259 AGGAATAAACTAGGAACAGGGAAT 57.090 37.500 0.00 0.00 0.00 3.01
3313 3871 8.272173 CAATAGGAATAAACTAGGAACAGGGAA 58.728 37.037 0.00 0.00 0.00 3.97
3314 3872 7.637301 GCAATAGGAATAAACTAGGAACAGGGA 60.637 40.741 0.00 0.00 0.00 4.20
3315 3873 6.486993 GCAATAGGAATAAACTAGGAACAGGG 59.513 42.308 0.00 0.00 0.00 4.45
3335 3893 3.202818 ACACCCCATCTCTCAATGCAATA 59.797 43.478 0.00 0.00 0.00 1.90
3336 3894 2.024655 ACACCCCATCTCTCAATGCAAT 60.025 45.455 0.00 0.00 0.00 3.56
3337 3895 1.355381 ACACCCCATCTCTCAATGCAA 59.645 47.619 0.00 0.00 0.00 4.08
3338 3896 0.994247 ACACCCCATCTCTCAATGCA 59.006 50.000 0.00 0.00 0.00 3.96
3367 3925 4.261656 GCCTGCTGTGTACTACGATAAGAT 60.262 45.833 0.00 0.00 0.00 2.40
3395 3953 2.800881 GCCATAGCAATAACTTGGCC 57.199 50.000 0.00 0.00 45.63 5.36
3407 3965 1.776034 GCGCACTAACTGGCCATAGC 61.776 60.000 5.51 3.41 38.76 2.97
3417 3975 1.398390 CCCAATTCTCAGCGCACTAAC 59.602 52.381 11.47 0.00 0.00 2.34
3524 4086 3.967332 AGAATCCAAGCCACCATTTTG 57.033 42.857 0.00 0.00 0.00 2.44
3533 4096 1.418264 GGAGGGAGTAGAATCCAAGCC 59.582 57.143 0.00 0.00 41.52 4.35
3546 4109 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3547 4110 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3548 4111 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3549 4112 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3597 4160 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3615 4178 9.661954 AGAGAATGATTTATACTCCCTCTGTAA 57.338 33.333 0.00 0.00 0.00 2.41
3617 4180 9.084533 GTAGAGAATGATTTATACTCCCTCTGT 57.915 37.037 0.00 0.00 31.76 3.41
3618 4181 9.083422 TGTAGAGAATGATTTATACTCCCTCTG 57.917 37.037 0.00 0.00 31.76 3.35
3619 4182 9.836179 ATGTAGAGAATGATTTATACTCCCTCT 57.164 33.333 0.00 0.00 33.62 3.69
3639 4202 9.967451 TGGAAGGTATCATTTTTACAATGTAGA 57.033 29.630 0.00 0.00 0.00 2.59
3641 4204 8.682710 GCTGGAAGGTATCATTTTTACAATGTA 58.317 33.333 0.00 0.00 0.00 2.29
3642 4205 7.178274 TGCTGGAAGGTATCATTTTTACAATGT 59.822 33.333 0.00 0.00 0.00 2.71
3643 4206 7.489113 GTGCTGGAAGGTATCATTTTTACAATG 59.511 37.037 0.00 0.00 0.00 2.82
3644 4207 7.178274 TGTGCTGGAAGGTATCATTTTTACAAT 59.822 33.333 0.00 0.00 0.00 2.71
3645 4208 6.491745 TGTGCTGGAAGGTATCATTTTTACAA 59.508 34.615 0.00 0.00 0.00 2.41
3646 4209 6.007076 TGTGCTGGAAGGTATCATTTTTACA 58.993 36.000 0.00 0.00 0.00 2.41
3674 4237 3.777106 TGGATTATCTGCCCTAGCTTG 57.223 47.619 0.00 0.00 40.80 4.01
3687 4250 9.830975 AGTTTTTGTTAGCTTTGTTTGGATTAT 57.169 25.926 0.00 0.00 0.00 1.28
3693 4256 6.311200 AGCTCAGTTTTTGTTAGCTTTGTTTG 59.689 34.615 0.00 0.00 40.52 2.93
3728 4291 2.784347 AGAAGGGCAAACTAGCTCAAC 58.216 47.619 0.00 0.00 37.50 3.18
3730 4293 3.149196 CAAAGAAGGGCAAACTAGCTCA 58.851 45.455 0.00 0.00 37.50 4.26
3731 4294 2.489722 CCAAAGAAGGGCAAACTAGCTC 59.510 50.000 0.00 0.00 34.37 4.09
3732 4295 2.519013 CCAAAGAAGGGCAAACTAGCT 58.481 47.619 0.00 0.00 34.17 3.32
3742 4305 1.680314 GCAGGGAGCCAAAGAAGGG 60.680 63.158 0.00 0.00 37.23 3.95
3743 4306 4.009015 GCAGGGAGCCAAAGAAGG 57.991 61.111 0.00 0.00 37.23 3.46
3752 4315 0.394080 AGCAAGATCAAGCAGGGAGC 60.394 55.000 11.31 0.00 46.19 4.70
3753 4316 1.339824 ACAGCAAGATCAAGCAGGGAG 60.340 52.381 11.31 0.22 0.00 4.30
3754 4317 0.694771 ACAGCAAGATCAAGCAGGGA 59.305 50.000 11.31 0.00 0.00 4.20
3755 4318 1.201647 CAACAGCAAGATCAAGCAGGG 59.798 52.381 11.31 3.95 0.00 4.45
3756 4319 1.402456 GCAACAGCAAGATCAAGCAGG 60.402 52.381 11.31 6.02 0.00 4.85
3757 4320 1.540267 AGCAACAGCAAGATCAAGCAG 59.460 47.619 11.31 6.27 0.00 4.24
3786 4349 2.299993 TTGATGCCTCAGAAGTAGCG 57.700 50.000 0.00 0.00 31.68 4.26
3875 4566 4.641645 CCAACCGGCCAGAGCACA 62.642 66.667 0.00 0.00 42.56 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.