Multiple sequence alignment - TraesCS1D01G396600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G396600 chr1D 100.000 2453 0 0 1 2453 464803532 464801080 0.000000e+00 4530.0
1 TraesCS1D01G396600 chr1D 86.462 783 59 23 849 1603 451524484 451525247 0.000000e+00 815.0
2 TraesCS1D01G396600 chr1D 87.854 247 18 7 2100 2343 464781635 464781398 1.860000e-71 279.0
3 TraesCS1D01G396600 chr1D 87.124 233 19 11 650 875 464781858 464781630 1.130000e-63 254.0
4 TraesCS1D01G396600 chr1D 87.000 100 9 4 118 213 426179341 426179440 2.580000e-20 110.0
5 TraesCS1D01G396600 chr1D 81.119 143 12 5 87 216 490511365 490511225 1.550000e-17 100.0
6 TraesCS1D01G396600 chr1B 88.711 1063 68 20 742 1775 641523870 641522831 0.000000e+00 1251.0
7 TraesCS1D01G396600 chr1B 89.286 644 41 17 849 1467 620129993 620129353 0.000000e+00 782.0
8 TraesCS1D01G396600 chr1B 85.443 790 66 30 849 1603 620551513 620552288 0.000000e+00 776.0
9 TraesCS1D01G396600 chr1B 85.250 739 67 26 990 1714 610558416 610559126 0.000000e+00 723.0
10 TraesCS1D01G396600 chr1B 92.887 478 25 2 990 1458 621059334 621059811 0.000000e+00 686.0
11 TraesCS1D01G396600 chr1B 94.581 406 19 1 1051 1456 587501263 587500861 2.070000e-175 625.0
12 TraesCS1D01G396600 chr1B 83.777 376 47 8 224 586 38211752 38212126 6.490000e-91 344.0
13 TraesCS1D01G396600 chr1B 80.071 281 25 9 1765 2027 641521467 641521200 1.940000e-41 180.0
14 TraesCS1D01G396600 chr1B 93.939 66 4 0 1643 1708 641520600 641520535 1.550000e-17 100.0
15 TraesCS1D01G396600 chr1A 89.174 896 60 15 707 1575 557099943 557099058 0.000000e+00 1083.0
16 TraesCS1D01G396600 chr1A 85.478 785 64 29 849 1603 546212257 546213021 0.000000e+00 773.0
17 TraesCS1D01G396600 chr1A 93.532 201 7 2 1746 1940 557099031 557098831 6.630000e-76 294.0
18 TraesCS1D01G396600 chr1A 82.680 306 25 11 2077 2382 557097799 557097522 1.880000e-61 246.0
19 TraesCS1D01G396600 chr1A 74.824 568 72 36 1423 1965 557098441 557097920 8.950000e-45 191.0
20 TraesCS1D01G396600 chr1A 85.714 161 18 3 2224 2381 557098725 557098567 5.430000e-37 165.0
21 TraesCS1D01G396600 chr6B 85.503 945 83 33 792 1707 651990638 651991557 0.000000e+00 937.0
22 TraesCS1D01G396600 chr6B 85.535 636 61 21 847 1454 61800038 61799406 9.570000e-179 636.0
23 TraesCS1D01G396600 chr6B 93.797 403 22 1 1051 1453 28513361 28512962 9.700000e-169 603.0
24 TraesCS1D01G396600 chr6B 92.272 427 30 1 1027 1453 29044775 29045198 9.700000e-169 603.0
25 TraesCS1D01G396600 chrUn 85.310 953 83 26 792 1707 74601963 74602895 0.000000e+00 931.0
26 TraesCS1D01G396600 chrUn 81.572 369 56 6 227 586 304894259 304893894 6.630000e-76 294.0
27 TraesCS1D01G396600 chrUn 85.915 71 2 3 154 216 341759273 341759203 4.380000e-08 69.4
28 TraesCS1D01G396600 chr6D 86.716 813 56 23 792 1573 431856172 431856963 0.000000e+00 856.0
29 TraesCS1D01G396600 chr6D 93.300 403 24 1 1051 1453 16386477 16386078 2.100000e-165 592.0
30 TraesCS1D01G396600 chr6D 80.263 380 58 8 220 586 18380049 18380424 1.120000e-68 270.0
31 TraesCS1D01G396600 chr3A 94.293 403 20 1 1053 1455 66254126 66254525 4.480000e-172 614.0
32 TraesCS1D01G396600 chr6A 94.074 405 21 1 1053 1457 16655680 16655279 1.610000e-171 612.0
33 TraesCS1D01G396600 chr5B 84.270 356 46 3 232 580 332699555 332699203 3.020000e-89 339.0
34 TraesCS1D01G396600 chr5B 81.644 365 55 6 232 587 417997906 417997545 2.390000e-75 292.0
35 TraesCS1D01G396600 chr5B 88.679 106 6 5 114 213 386391365 386391260 9.210000e-25 124.0
36 TraesCS1D01G396600 chr7A 83.976 337 41 6 250 586 664500641 664500318 6.590000e-81 311.0
37 TraesCS1D01G396600 chr3B 81.383 376 56 7 222 586 19755839 19756211 6.630000e-76 294.0
38 TraesCS1D01G396600 chr3B 81.383 376 56 7 222 586 19783991 19784363 6.630000e-76 294.0
39 TraesCS1D01G396600 chr5A 80.759 369 55 10 228 586 556534793 556535155 8.640000e-70 274.0
40 TraesCS1D01G396600 chr2D 97.101 69 2 0 2245 2313 606093440 606093508 1.540000e-22 117.0
41 TraesCS1D01G396600 chr2D 82.963 135 15 5 86 213 470201860 470201727 5.540000e-22 115.0
42 TraesCS1D01G396600 chr2D 87.640 89 4 3 130 211 458487035 458487123 2.010000e-16 97.1
43 TraesCS1D01G396600 chr2D 97.619 42 1 0 2077 2118 606093211 606093252 3.380000e-09 73.1
44 TraesCS1D01G396600 chr2A 87.379 103 6 3 116 211 57144009 57143907 7.170000e-21 111.0
45 TraesCS1D01G396600 chr2A 86.408 103 4 6 121 213 703996707 703996809 1.200000e-18 104.0
46 TraesCS1D01G396600 chr2B 94.915 59 0 1 158 213 636474027 636473969 3.360000e-14 89.8
47 TraesCS1D01G396600 chr5D 89.286 56 1 3 163 213 330393299 330393244 5.660000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G396600 chr1D 464801080 464803532 2452 True 4530.000000 4530 100.000000 1 2453 1 chr1D.!!$R1 2452
1 TraesCS1D01G396600 chr1D 451524484 451525247 763 False 815.000000 815 86.462000 849 1603 1 chr1D.!!$F2 754
2 TraesCS1D01G396600 chr1B 620129353 620129993 640 True 782.000000 782 89.286000 849 1467 1 chr1B.!!$R2 618
3 TraesCS1D01G396600 chr1B 620551513 620552288 775 False 776.000000 776 85.443000 849 1603 1 chr1B.!!$F3 754
4 TraesCS1D01G396600 chr1B 610558416 610559126 710 False 723.000000 723 85.250000 990 1714 1 chr1B.!!$F2 724
5 TraesCS1D01G396600 chr1B 641520535 641523870 3335 True 510.333333 1251 87.573667 742 2027 3 chr1B.!!$R3 1285
6 TraesCS1D01G396600 chr1A 546212257 546213021 764 False 773.000000 773 85.478000 849 1603 1 chr1A.!!$F1 754
7 TraesCS1D01G396600 chr1A 557097522 557099943 2421 True 395.800000 1083 85.184800 707 2382 5 chr1A.!!$R1 1675
8 TraesCS1D01G396600 chr6B 651990638 651991557 919 False 937.000000 937 85.503000 792 1707 1 chr6B.!!$F2 915
9 TraesCS1D01G396600 chr6B 61799406 61800038 632 True 636.000000 636 85.535000 847 1454 1 chr6B.!!$R2 607
10 TraesCS1D01G396600 chrUn 74601963 74602895 932 False 931.000000 931 85.310000 792 1707 1 chrUn.!!$F1 915
11 TraesCS1D01G396600 chr6D 431856172 431856963 791 False 856.000000 856 86.716000 792 1573 1 chr6D.!!$F2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 588 0.108186 TGCAGCAGATACGTTCCCAG 60.108 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2186 4586 0.031857 CAAGCACAATTCCGGCACAA 59.968 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.238497 TGCTACCAGTGCACCGGT 61.238 61.111 27.17 27.17 39.41 5.28
33 34 2.434359 GCTACCAGTGCACCGGTC 60.434 66.667 27.79 11.45 36.69 4.79
34 35 2.943978 GCTACCAGTGCACCGGTCT 61.944 63.158 27.79 7.75 36.69 3.85
35 36 1.215647 CTACCAGTGCACCGGTCTC 59.784 63.158 27.79 0.00 36.69 3.36
36 37 2.227089 CTACCAGTGCACCGGTCTCC 62.227 65.000 27.79 0.00 36.69 3.71
37 38 4.394712 CCAGTGCACCGGTCTCCC 62.395 72.222 14.63 0.00 0.00 4.30
48 49 1.592223 GGTCTCCCGTCTTCAGTGG 59.408 63.158 0.00 0.00 0.00 4.00
49 50 1.079750 GTCTCCCGTCTTCAGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
50 51 2.125912 CTCCCGTCTTCAGTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
51 52 3.649277 CTCCCGTCTTCAGTGGCGG 62.649 68.421 0.14 0.14 43.40 6.13
52 53 3.691342 CCCGTCTTCAGTGGCGGA 61.691 66.667 9.20 0.00 46.33 5.54
53 54 2.125912 CCGTCTTCAGTGGCGGAG 60.126 66.667 0.90 0.00 46.33 4.63
66 67 2.203209 CGGAGCTATGTTGGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
67 68 3.006677 GGAGCTATGTTGGGGGCA 58.993 61.111 0.00 0.00 0.00 5.36
68 69 1.152881 GGAGCTATGTTGGGGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
69 70 1.152881 GAGCTATGTTGGGGGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
70 71 2.123726 GCTATGTTGGGGGCAGGG 60.124 66.667 0.00 0.00 0.00 4.45
71 72 2.603008 CTATGTTGGGGGCAGGGG 59.397 66.667 0.00 0.00 0.00 4.79
72 73 3.026847 TATGTTGGGGGCAGGGGG 61.027 66.667 0.00 0.00 0.00 5.40
111 112 3.824133 CAGCCATGGATGAATTACTGGA 58.176 45.455 26.03 0.00 32.62 3.86
112 113 3.819337 CAGCCATGGATGAATTACTGGAG 59.181 47.826 26.03 0.00 32.62 3.86
113 114 3.718434 AGCCATGGATGAATTACTGGAGA 59.282 43.478 18.40 0.00 0.00 3.71
114 115 4.353191 AGCCATGGATGAATTACTGGAGAT 59.647 41.667 18.40 0.00 0.00 2.75
115 116 5.075493 GCCATGGATGAATTACTGGAGATT 58.925 41.667 18.40 0.00 0.00 2.40
116 117 5.537674 GCCATGGATGAATTACTGGAGATTT 59.462 40.000 18.40 0.00 0.00 2.17
117 118 6.041296 GCCATGGATGAATTACTGGAGATTTT 59.959 38.462 18.40 0.00 0.00 1.82
118 119 7.418254 GCCATGGATGAATTACTGGAGATTTTT 60.418 37.037 18.40 0.00 0.00 1.94
142 143 8.568617 TTTTTAGGGAGGCTTAGATTAGATCT 57.431 34.615 0.00 0.00 43.33 2.75
143 144 8.568617 TTTTAGGGAGGCTTAGATTAGATCTT 57.431 34.615 0.00 0.00 40.76 2.40
144 145 8.568617 TTTAGGGAGGCTTAGATTAGATCTTT 57.431 34.615 0.00 0.00 40.76 2.52
145 146 8.568617 TTAGGGAGGCTTAGATTAGATCTTTT 57.431 34.615 0.00 0.00 40.76 2.27
146 147 9.670442 TTAGGGAGGCTTAGATTAGATCTTTTA 57.330 33.333 0.00 0.00 40.76 1.52
147 148 8.201242 AGGGAGGCTTAGATTAGATCTTTTAG 57.799 38.462 0.00 0.00 40.76 1.85
148 149 6.876789 GGGAGGCTTAGATTAGATCTTTTAGC 59.123 42.308 0.00 2.22 40.76 3.09
149 150 7.445945 GGAGGCTTAGATTAGATCTTTTAGCA 58.554 38.462 0.00 0.00 40.76 3.49
150 151 8.100164 GGAGGCTTAGATTAGATCTTTTAGCAT 58.900 37.037 0.00 0.00 40.76 3.79
151 152 9.500785 GAGGCTTAGATTAGATCTTTTAGCATT 57.499 33.333 0.00 0.00 40.76 3.56
152 153 9.859152 AGGCTTAGATTAGATCTTTTAGCATTT 57.141 29.630 0.00 0.00 40.76 2.32
153 154 9.890352 GGCTTAGATTAGATCTTTTAGCATTTG 57.110 33.333 0.00 0.00 40.76 2.32
154 155 9.890352 GCTTAGATTAGATCTTTTAGCATTTGG 57.110 33.333 0.00 0.00 40.76 3.28
155 156 9.890352 CTTAGATTAGATCTTTTAGCATTTGGC 57.110 33.333 0.00 0.00 40.76 4.52
156 157 7.282332 AGATTAGATCTTTTAGCATTTGGCC 57.718 36.000 0.00 0.00 39.10 5.36
157 158 5.852282 TTAGATCTTTTAGCATTTGGCCC 57.148 39.130 0.00 0.00 46.50 5.80
158 159 3.033909 AGATCTTTTAGCATTTGGCCCC 58.966 45.455 0.00 0.00 46.50 5.80
159 160 1.567357 TCTTTTAGCATTTGGCCCCC 58.433 50.000 0.00 0.00 46.50 5.40
176 177 3.598019 CCCCCAAACACTGATGATTTG 57.402 47.619 0.00 0.00 33.90 2.32
177 178 2.899256 CCCCCAAACACTGATGATTTGT 59.101 45.455 0.00 0.00 32.53 2.83
178 179 3.306225 CCCCCAAACACTGATGATTTGTG 60.306 47.826 0.00 0.00 37.67 3.33
179 180 3.321682 CCCCAAACACTGATGATTTGTGT 59.678 43.478 0.00 0.00 45.42 3.72
184 185 3.157087 ACACTGATGATTTGTGTTCCCC 58.843 45.455 0.00 0.00 41.45 4.81
185 186 2.493278 CACTGATGATTTGTGTTCCCCC 59.507 50.000 0.00 0.00 0.00 5.40
199 200 3.603365 CCCCCAGTGATTTTCGGC 58.397 61.111 0.00 0.00 0.00 5.54
200 201 1.000896 CCCCCAGTGATTTTCGGCT 60.001 57.895 0.00 0.00 0.00 5.52
201 202 0.254747 CCCCCAGTGATTTTCGGCTA 59.745 55.000 0.00 0.00 0.00 3.93
202 203 1.668419 CCCCAGTGATTTTCGGCTAG 58.332 55.000 0.00 0.00 0.00 3.42
203 204 1.017387 CCCAGTGATTTTCGGCTAGC 58.983 55.000 6.04 6.04 0.00 3.42
204 205 1.407437 CCCAGTGATTTTCGGCTAGCT 60.407 52.381 15.72 0.00 0.00 3.32
205 206 1.936547 CCAGTGATTTTCGGCTAGCTC 59.063 52.381 15.72 3.42 0.00 4.09
206 207 1.936547 CAGTGATTTTCGGCTAGCTCC 59.063 52.381 15.72 0.00 0.00 4.70
214 215 2.417936 GGCTAGCTCCGCCACTAC 59.582 66.667 19.11 0.00 46.77 2.73
215 216 2.417936 GCTAGCTCCGCCACTACC 59.582 66.667 7.70 0.00 0.00 3.18
216 217 2.423898 GCTAGCTCCGCCACTACCA 61.424 63.158 7.70 0.00 0.00 3.25
217 218 1.736586 CTAGCTCCGCCACTACCAG 59.263 63.158 0.00 0.00 0.00 4.00
218 219 1.000019 TAGCTCCGCCACTACCAGT 60.000 57.895 0.00 0.00 0.00 4.00
219 220 1.035932 TAGCTCCGCCACTACCAGTC 61.036 60.000 0.00 0.00 0.00 3.51
220 221 2.490217 CTCCGCCACTACCAGTCG 59.510 66.667 0.00 0.00 0.00 4.18
221 222 2.282674 TCCGCCACTACCAGTCGT 60.283 61.111 0.00 0.00 0.00 4.34
222 223 2.126071 CCGCCACTACCAGTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
223 224 2.809601 CGCCACTACCAGTCGTGC 60.810 66.667 0.00 0.00 0.00 5.34
224 225 2.342279 GCCACTACCAGTCGTGCA 59.658 61.111 0.00 0.00 0.00 4.57
225 226 2.027625 GCCACTACCAGTCGTGCAC 61.028 63.158 6.82 6.82 0.00 4.57
226 227 1.666011 CCACTACCAGTCGTGCACT 59.334 57.895 16.19 0.00 34.67 4.40
227 228 0.885879 CCACTACCAGTCGTGCACTA 59.114 55.000 16.19 0.00 32.21 2.74
228 229 1.271379 CCACTACCAGTCGTGCACTAA 59.729 52.381 16.19 0.00 32.21 2.24
229 230 2.288579 CCACTACCAGTCGTGCACTAAA 60.289 50.000 16.19 0.00 32.21 1.85
230 231 3.386486 CACTACCAGTCGTGCACTAAAA 58.614 45.455 16.19 0.00 32.21 1.52
231 232 3.805422 CACTACCAGTCGTGCACTAAAAA 59.195 43.478 16.19 0.00 32.21 1.94
279 280 3.762293 GCACTGGCACCACATCAA 58.238 55.556 0.00 0.00 40.72 2.57
280 281 2.269978 GCACTGGCACCACATCAAT 58.730 52.632 0.00 0.00 40.72 2.57
281 282 1.462616 GCACTGGCACCACATCAATA 58.537 50.000 0.00 0.00 40.72 1.90
282 283 2.026641 GCACTGGCACCACATCAATAT 58.973 47.619 0.00 0.00 40.72 1.28
283 284 3.213506 GCACTGGCACCACATCAATATA 58.786 45.455 0.00 0.00 40.72 0.86
284 285 3.251729 GCACTGGCACCACATCAATATAG 59.748 47.826 0.00 0.00 40.72 1.31
285 286 3.817084 CACTGGCACCACATCAATATAGG 59.183 47.826 0.00 0.00 0.00 2.57
286 287 3.459598 ACTGGCACCACATCAATATAGGT 59.540 43.478 0.00 0.00 0.00 3.08
287 288 4.079787 ACTGGCACCACATCAATATAGGTT 60.080 41.667 0.00 0.00 0.00 3.50
288 289 4.206375 TGGCACCACATCAATATAGGTTG 58.794 43.478 0.00 0.00 0.00 3.77
289 290 4.207165 GGCACCACATCAATATAGGTTGT 58.793 43.478 0.00 0.00 0.00 3.32
290 291 4.275936 GGCACCACATCAATATAGGTTGTC 59.724 45.833 0.00 0.00 0.00 3.18
291 292 4.881273 GCACCACATCAATATAGGTTGTCA 59.119 41.667 0.00 0.00 0.00 3.58
292 293 5.220854 GCACCACATCAATATAGGTTGTCAC 60.221 44.000 0.00 0.00 0.00 3.67
293 294 5.879777 CACCACATCAATATAGGTTGTCACA 59.120 40.000 0.00 0.00 0.00 3.58
294 295 6.374053 CACCACATCAATATAGGTTGTCACAA 59.626 38.462 0.00 0.00 0.00 3.33
295 296 6.945435 ACCACATCAATATAGGTTGTCACAAA 59.055 34.615 0.00 0.00 0.00 2.83
296 297 7.450014 ACCACATCAATATAGGTTGTCACAAAA 59.550 33.333 0.00 0.00 0.00 2.44
297 298 8.303156 CCACATCAATATAGGTTGTCACAAAAA 58.697 33.333 0.00 0.00 0.00 1.94
298 299 9.859427 CACATCAATATAGGTTGTCACAAAAAT 57.141 29.630 0.00 0.00 0.00 1.82
307 308 9.829507 ATAGGTTGTCACAAAAATTCAAATCAA 57.170 25.926 0.00 0.00 0.00 2.57
308 309 8.558973 AGGTTGTCACAAAAATTCAAATCAAA 57.441 26.923 0.00 0.00 0.00 2.69
309 310 9.007901 AGGTTGTCACAAAAATTCAAATCAAAA 57.992 25.926 0.00 0.00 0.00 2.44
310 311 9.786105 GGTTGTCACAAAAATTCAAATCAAAAT 57.214 25.926 0.00 0.00 0.00 1.82
313 314 9.699985 TGTCACAAAAATTCAAATCAAAATTCG 57.300 25.926 0.00 0.00 0.00 3.34
314 315 9.913451 GTCACAAAAATTCAAATCAAAATTCGA 57.087 25.926 0.00 0.00 0.00 3.71
325 326 8.637704 TCAAATCAAAATTCGAAACATTGATCG 58.362 29.630 24.39 20.27 39.19 3.69
326 327 8.637704 CAAATCAAAATTCGAAACATTGATCGA 58.362 29.630 24.39 12.79 45.48 3.59
330 331 2.378445 TCGAAACATTGATCGAGGCA 57.622 45.000 12.79 0.00 42.61 4.75
331 332 1.999735 TCGAAACATTGATCGAGGCAC 59.000 47.619 12.79 0.00 42.61 5.01
332 333 1.731709 CGAAACATTGATCGAGGCACA 59.268 47.619 9.84 0.00 41.43 4.57
333 334 2.159430 CGAAACATTGATCGAGGCACAA 59.841 45.455 9.84 0.00 41.43 3.33
334 335 3.364864 CGAAACATTGATCGAGGCACAAA 60.365 43.478 9.84 0.00 41.43 2.83
335 336 4.545610 GAAACATTGATCGAGGCACAAAA 58.454 39.130 0.00 0.00 0.00 2.44
336 337 4.582701 AACATTGATCGAGGCACAAAAA 57.417 36.364 0.00 0.00 0.00 1.94
337 338 4.789012 ACATTGATCGAGGCACAAAAAT 57.211 36.364 0.00 0.00 0.00 1.82
338 339 4.737054 ACATTGATCGAGGCACAAAAATC 58.263 39.130 0.00 0.00 0.00 2.17
339 340 4.218200 ACATTGATCGAGGCACAAAAATCA 59.782 37.500 0.00 0.00 0.00 2.57
340 341 3.829886 TGATCGAGGCACAAAAATCAC 57.170 42.857 0.00 0.00 0.00 3.06
341 342 3.145286 TGATCGAGGCACAAAAATCACA 58.855 40.909 0.00 0.00 0.00 3.58
342 343 3.567585 TGATCGAGGCACAAAAATCACAA 59.432 39.130 0.00 0.00 0.00 3.33
343 344 4.037327 TGATCGAGGCACAAAAATCACAAA 59.963 37.500 0.00 0.00 0.00 2.83
344 345 4.582701 TCGAGGCACAAAAATCACAAAT 57.417 36.364 0.00 0.00 0.00 2.32
345 346 4.942852 TCGAGGCACAAAAATCACAAATT 58.057 34.783 0.00 0.00 0.00 1.82
346 347 5.355596 TCGAGGCACAAAAATCACAAATTT 58.644 33.333 0.00 0.00 0.00 1.82
347 348 5.233902 TCGAGGCACAAAAATCACAAATTTG 59.766 36.000 16.67 16.67 39.38 2.32
348 349 5.233902 CGAGGCACAAAAATCACAAATTTGA 59.766 36.000 24.64 3.52 37.46 2.69
349 350 6.362210 AGGCACAAAAATCACAAATTTGAC 57.638 33.333 24.64 0.00 37.46 3.18
350 351 5.879223 AGGCACAAAAATCACAAATTTGACA 59.121 32.000 24.64 10.37 37.46 3.58
351 352 5.964751 GGCACAAAAATCACAAATTTGACAC 59.035 36.000 24.64 1.09 37.46 3.67
352 353 6.402983 GGCACAAAAATCACAAATTTGACACA 60.403 34.615 24.64 5.51 37.46 3.72
353 354 7.020010 GCACAAAAATCACAAATTTGACACAA 58.980 30.769 24.64 5.37 37.46 3.33
354 355 7.536622 GCACAAAAATCACAAATTTGACACAAA 59.463 29.630 24.64 0.00 37.46 2.83
355 356 9.390795 CACAAAAATCACAAATTTGACACAAAA 57.609 25.926 24.64 2.42 37.46 2.44
372 373 9.332502 TGACACAAAATAGTACATAACACAAGT 57.667 29.630 0.00 0.00 0.00 3.16
374 375 9.944663 ACACAAAATAGTACATAACACAAGTTG 57.055 29.630 0.00 0.00 38.69 3.16
375 376 9.393249 CACAAAATAGTACATAACACAAGTTGG 57.607 33.333 7.96 0.00 38.69 3.77
376 377 8.573035 ACAAAATAGTACATAACACAAGTTGGG 58.427 33.333 2.79 2.79 38.69 4.12
377 378 6.753107 AATAGTACATAACACAAGTTGGGC 57.247 37.500 4.63 0.00 38.69 5.36
378 379 4.367039 AGTACATAACACAAGTTGGGCT 57.633 40.909 4.63 0.00 38.69 5.19
379 380 4.725490 AGTACATAACACAAGTTGGGCTT 58.275 39.130 4.63 1.74 38.69 4.35
380 381 4.760204 AGTACATAACACAAGTTGGGCTTC 59.240 41.667 4.63 0.00 38.69 3.86
381 382 3.561143 ACATAACACAAGTTGGGCTTCA 58.439 40.909 4.63 0.00 38.69 3.02
382 383 3.569701 ACATAACACAAGTTGGGCTTCAG 59.430 43.478 4.63 0.00 38.69 3.02
383 384 0.746659 AACACAAGTTGGGCTTCAGC 59.253 50.000 4.63 0.00 36.39 4.26
393 394 4.333417 GCTTCAGCCTTGGCTCAT 57.667 55.556 11.72 0.00 34.31 2.90
394 395 2.576298 GCTTCAGCCTTGGCTCATT 58.424 52.632 11.72 0.00 34.31 2.57
395 396 1.755179 GCTTCAGCCTTGGCTCATTA 58.245 50.000 11.72 0.00 34.31 1.90
396 397 1.674962 GCTTCAGCCTTGGCTCATTAG 59.325 52.381 11.72 7.64 34.31 1.73
397 398 4.150610 GCTTCAGCCTTGGCTCATTAGC 62.151 54.545 11.72 13.12 40.79 3.09
416 417 9.926158 TCATTAGCACATTGATGTTAAATTTGT 57.074 25.926 0.00 0.00 39.39 2.83
418 419 6.932901 AGCACATTGATGTTAAATTTGTCG 57.067 33.333 0.00 0.00 39.39 4.35
419 420 6.676950 AGCACATTGATGTTAAATTTGTCGA 58.323 32.000 0.00 0.00 39.39 4.20
420 421 7.315142 AGCACATTGATGTTAAATTTGTCGAT 58.685 30.769 0.00 0.00 39.39 3.59
421 422 7.814107 AGCACATTGATGTTAAATTTGTCGATT 59.186 29.630 0.00 0.00 39.39 3.34
422 423 8.434661 GCACATTGATGTTAAATTTGTCGATTT 58.565 29.630 0.00 0.00 39.39 2.17
435 436 8.902040 AATTTGTCGATTTTCTTATCTCAAGC 57.098 30.769 0.00 0.00 0.00 4.01
436 437 7.433708 TTTGTCGATTTTCTTATCTCAAGCA 57.566 32.000 0.00 0.00 0.00 3.91
437 438 7.433708 TTGTCGATTTTCTTATCTCAAGCAA 57.566 32.000 0.00 0.00 0.00 3.91
438 439 7.615582 TGTCGATTTTCTTATCTCAAGCAAT 57.384 32.000 0.00 0.00 0.00 3.56
439 440 7.466805 TGTCGATTTTCTTATCTCAAGCAATG 58.533 34.615 0.00 0.00 0.00 2.82
440 441 7.119699 TGTCGATTTTCTTATCTCAAGCAATGT 59.880 33.333 0.00 0.00 0.00 2.71
441 442 7.965107 GTCGATTTTCTTATCTCAAGCAATGTT 59.035 33.333 0.00 0.00 0.00 2.71
442 443 8.514594 TCGATTTTCTTATCTCAAGCAATGTTT 58.485 29.630 0.00 0.00 0.00 2.83
443 444 9.132521 CGATTTTCTTATCTCAAGCAATGTTTT 57.867 29.630 0.00 0.00 0.00 2.43
445 446 9.985730 ATTTTCTTATCTCAAGCAATGTTTTGA 57.014 25.926 0.00 3.21 34.60 2.69
446 447 9.814899 TTTTCTTATCTCAAGCAATGTTTTGAA 57.185 25.926 4.47 0.00 34.60 2.69
447 448 9.985730 TTTCTTATCTCAAGCAATGTTTTGAAT 57.014 25.926 4.47 4.43 34.60 2.57
448 449 9.985730 TTCTTATCTCAAGCAATGTTTTGAATT 57.014 25.926 4.47 0.00 34.60 2.17
449 450 9.985730 TCTTATCTCAAGCAATGTTTTGAATTT 57.014 25.926 4.47 0.00 34.60 1.82
452 453 8.665643 ATCTCAAGCAATGTTTTGAATTTTGA 57.334 26.923 4.47 0.00 34.60 2.69
453 454 8.665643 TCTCAAGCAATGTTTTGAATTTTGAT 57.334 26.923 4.47 0.00 34.60 2.57
454 455 9.111613 TCTCAAGCAATGTTTTGAATTTTGATT 57.888 25.926 4.47 0.00 34.60 2.57
455 456 9.724839 CTCAAGCAATGTTTTGAATTTTGATTT 57.275 25.926 4.47 0.00 34.60 2.17
458 459 9.857957 AAGCAATGTTTTGAATTTTGATTTTGT 57.142 22.222 0.00 0.00 34.60 2.83
459 460 9.291664 AGCAATGTTTTGAATTTTGATTTTGTG 57.708 25.926 0.00 0.00 34.60 3.33
460 461 9.286946 GCAATGTTTTGAATTTTGATTTTGTGA 57.713 25.926 0.00 0.00 34.60 3.58
464 465 9.604626 TGTTTTGAATTTTGATTTTGTGACAAC 57.395 25.926 0.00 0.00 0.00 3.32
465 466 9.824534 GTTTTGAATTTTGATTTTGTGACAACT 57.175 25.926 0.00 0.00 0.00 3.16
469 470 9.645059 TGAATTTTGATTTTGTGACAACTTACA 57.355 25.926 0.00 0.00 0.00 2.41
473 474 9.645059 TTTTGATTTTGTGACAACTTACATTGA 57.355 25.926 0.00 0.00 33.57 2.57
474 475 9.814899 TTTGATTTTGTGACAACTTACATTGAT 57.185 25.926 0.00 0.00 33.57 2.57
480 481 9.676195 TTTGTGACAACTTACATTGATATTGTG 57.324 29.630 0.00 0.00 33.57 3.33
481 482 8.389779 TGTGACAACTTACATTGATATTGTGT 57.610 30.769 0.00 0.00 33.57 3.72
482 483 8.503196 TGTGACAACTTACATTGATATTGTGTC 58.497 33.333 0.00 0.00 33.57 3.67
483 484 8.503196 GTGACAACTTACATTGATATTGTGTCA 58.497 33.333 0.00 0.00 33.57 3.58
484 485 9.061435 TGACAACTTACATTGATATTGTGTCAA 57.939 29.630 0.00 0.00 39.65 3.18
495 496 9.926158 ATTGATATTGTGTCAATGCACTAAAAA 57.074 25.926 0.00 0.00 42.87 1.94
532 533 9.713740 TTTTTCATACATTTTTGAATGTGCAAC 57.286 25.926 13.42 0.00 42.79 4.17
533 534 6.687653 TCATACATTTTTGAATGTGCAACG 57.312 33.333 13.42 0.00 42.79 4.10
534 535 5.632764 TCATACATTTTTGAATGTGCAACGG 59.367 36.000 13.42 0.14 42.79 4.44
535 536 3.129871 ACATTTTTGAATGTGCAACGGG 58.870 40.909 4.14 0.00 41.46 5.28
536 537 2.231215 TTTTTGAATGTGCAACGGGG 57.769 45.000 0.00 0.00 42.39 5.73
537 538 1.115467 TTTTGAATGTGCAACGGGGT 58.885 45.000 0.00 0.00 42.39 4.95
538 539 0.671251 TTTGAATGTGCAACGGGGTC 59.329 50.000 0.00 0.00 42.39 4.46
539 540 1.175983 TTGAATGTGCAACGGGGTCC 61.176 55.000 0.00 0.00 42.39 4.46
573 574 3.512516 GGATTGCTCCGGTGCAGC 61.513 66.667 28.12 23.14 44.27 5.25
574 575 2.747460 GATTGCTCCGGTGCAGCA 60.747 61.111 28.12 20.48 45.32 4.41
577 578 3.709633 TGCTCCGGTGCAGCAGAT 61.710 61.111 26.46 0.00 42.09 2.90
578 579 2.358372 TGCTCCGGTGCAGCAGATA 61.358 57.895 26.46 2.55 42.09 1.98
579 580 1.884926 GCTCCGGTGCAGCAGATAC 60.885 63.158 23.09 1.70 36.82 2.24
580 581 1.589993 CTCCGGTGCAGCAGATACG 60.590 63.158 17.33 0.00 0.00 3.06
581 582 2.184322 CCGGTGCAGCAGATACGT 59.816 61.111 17.33 0.00 0.00 3.57
582 583 1.447838 CCGGTGCAGCAGATACGTT 60.448 57.895 17.33 0.00 0.00 3.99
583 584 1.421410 CCGGTGCAGCAGATACGTTC 61.421 60.000 17.33 0.00 0.00 3.95
584 585 1.421410 CGGTGCAGCAGATACGTTCC 61.421 60.000 17.33 0.00 0.00 3.62
585 586 1.090052 GGTGCAGCAGATACGTTCCC 61.090 60.000 11.86 0.00 0.00 3.97
586 587 0.391130 GTGCAGCAGATACGTTCCCA 60.391 55.000 0.00 0.00 0.00 4.37
587 588 0.108186 TGCAGCAGATACGTTCCCAG 60.108 55.000 0.00 0.00 0.00 4.45
588 589 0.175760 GCAGCAGATACGTTCCCAGA 59.824 55.000 0.00 0.00 0.00 3.86
589 590 1.927895 CAGCAGATACGTTCCCAGAC 58.072 55.000 0.00 0.00 0.00 3.51
590 591 0.824759 AGCAGATACGTTCCCAGACC 59.175 55.000 0.00 0.00 0.00 3.85
591 592 0.824759 GCAGATACGTTCCCAGACCT 59.175 55.000 0.00 0.00 0.00 3.85
592 593 1.202428 GCAGATACGTTCCCAGACCTC 60.202 57.143 0.00 0.00 0.00 3.85
593 594 1.409427 CAGATACGTTCCCAGACCTCC 59.591 57.143 0.00 0.00 0.00 4.30
594 595 1.006758 AGATACGTTCCCAGACCTCCA 59.993 52.381 0.00 0.00 0.00 3.86
595 596 2.040178 GATACGTTCCCAGACCTCCAT 58.960 52.381 0.00 0.00 0.00 3.41
596 597 2.832643 TACGTTCCCAGACCTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
597 598 1.486211 ACGTTCCCAGACCTCCATAG 58.514 55.000 0.00 0.00 0.00 2.23
607 608 1.449353 CCTCCATAGGCTGAGCACC 59.551 63.158 6.82 0.00 35.64 5.01
608 609 1.053264 CCTCCATAGGCTGAGCACCT 61.053 60.000 6.82 0.00 41.57 4.00
609 610 0.835941 CTCCATAGGCTGAGCACCTT 59.164 55.000 6.82 0.00 38.81 3.50
610 611 1.211457 CTCCATAGGCTGAGCACCTTT 59.789 52.381 6.82 0.00 38.81 3.11
611 612 1.635487 TCCATAGGCTGAGCACCTTTT 59.365 47.619 6.82 0.00 38.81 2.27
612 613 2.041620 TCCATAGGCTGAGCACCTTTTT 59.958 45.455 6.82 0.00 38.81 1.94
613 614 2.424956 CCATAGGCTGAGCACCTTTTTC 59.575 50.000 6.82 0.00 38.81 2.29
614 615 2.200373 TAGGCTGAGCACCTTTTTCC 57.800 50.000 6.82 0.00 38.81 3.13
615 616 0.540597 AGGCTGAGCACCTTTTTCCC 60.541 55.000 6.82 0.00 31.87 3.97
616 617 1.536073 GGCTGAGCACCTTTTTCCCC 61.536 60.000 6.82 0.00 0.00 4.81
617 618 1.536073 GCTGAGCACCTTTTTCCCCC 61.536 60.000 0.00 0.00 0.00 5.40
633 634 2.971901 CCCCCTTTACTTGGAGTGTT 57.028 50.000 0.00 0.00 0.00 3.32
634 635 3.238788 CCCCCTTTACTTGGAGTGTTT 57.761 47.619 0.00 0.00 0.00 2.83
635 636 3.572642 CCCCCTTTACTTGGAGTGTTTT 58.427 45.455 0.00 0.00 0.00 2.43
636 637 3.572682 CCCCCTTTACTTGGAGTGTTTTC 59.427 47.826 0.00 0.00 0.00 2.29
637 638 4.470602 CCCCTTTACTTGGAGTGTTTTCT 58.529 43.478 0.00 0.00 0.00 2.52
638 639 4.278419 CCCCTTTACTTGGAGTGTTTTCTG 59.722 45.833 0.00 0.00 0.00 3.02
639 640 4.887655 CCCTTTACTTGGAGTGTTTTCTGT 59.112 41.667 0.00 0.00 0.00 3.41
640 641 6.059484 CCCTTTACTTGGAGTGTTTTCTGTA 58.941 40.000 0.00 0.00 0.00 2.74
641 642 6.544564 CCCTTTACTTGGAGTGTTTTCTGTAA 59.455 38.462 0.00 0.00 0.00 2.41
642 643 7.067737 CCCTTTACTTGGAGTGTTTTCTGTAAA 59.932 37.037 0.00 0.00 0.00 2.01
643 644 8.463607 CCTTTACTTGGAGTGTTTTCTGTAAAA 58.536 33.333 0.00 0.00 31.30 1.52
650 651 8.865590 TGGAGTGTTTTCTGTAAAATTTTAGC 57.134 30.769 10.92 7.12 36.96 3.09
651 652 8.470805 TGGAGTGTTTTCTGTAAAATTTTAGCA 58.529 29.630 10.92 10.76 36.96 3.49
652 653 8.752254 GGAGTGTTTTCTGTAAAATTTTAGCAC 58.248 33.333 10.92 8.96 36.96 4.40
653 654 9.296400 GAGTGTTTTCTGTAAAATTTTAGCACA 57.704 29.630 10.92 7.72 36.96 4.57
654 655 9.301153 AGTGTTTTCTGTAAAATTTTAGCACAG 57.699 29.630 19.61 19.61 36.96 3.66
655 656 9.083080 GTGTTTTCTGTAAAATTTTAGCACAGT 57.917 29.630 22.60 0.00 36.96 3.55
656 657 9.646427 TGTTTTCTGTAAAATTTTAGCACAGTT 57.354 25.926 22.60 0.00 36.96 3.16
657 658 9.900264 GTTTTCTGTAAAATTTTAGCACAGTTG 57.100 29.630 22.60 7.53 36.96 3.16
658 659 9.646427 TTTTCTGTAAAATTTTAGCACAGTTGT 57.354 25.926 22.60 0.00 29.59 3.32
669 670 8.492673 TTTTAGCACAGTTGTATTATCTCAGG 57.507 34.615 0.00 0.00 0.00 3.86
670 671 4.446371 AGCACAGTTGTATTATCTCAGGC 58.554 43.478 0.00 0.00 0.00 4.85
671 672 4.163078 AGCACAGTTGTATTATCTCAGGCT 59.837 41.667 0.00 0.00 0.00 4.58
672 673 4.509600 GCACAGTTGTATTATCTCAGGCTC 59.490 45.833 0.00 0.00 0.00 4.70
673 674 5.683509 GCACAGTTGTATTATCTCAGGCTCT 60.684 44.000 0.00 0.00 0.00 4.09
674 675 5.982516 CACAGTTGTATTATCTCAGGCTCTC 59.017 44.000 0.00 0.00 0.00 3.20
675 676 5.896678 ACAGTTGTATTATCTCAGGCTCTCT 59.103 40.000 0.00 0.00 0.00 3.10
676 677 6.382570 ACAGTTGTATTATCTCAGGCTCTCTT 59.617 38.462 0.00 0.00 0.00 2.85
677 678 7.561722 ACAGTTGTATTATCTCAGGCTCTCTTA 59.438 37.037 0.00 0.00 0.00 2.10
678 679 8.584157 CAGTTGTATTATCTCAGGCTCTCTTAT 58.416 37.037 0.00 0.00 0.00 1.73
679 680 9.153479 AGTTGTATTATCTCAGGCTCTCTTATT 57.847 33.333 0.00 0.00 0.00 1.40
680 681 9.202273 GTTGTATTATCTCAGGCTCTCTTATTG 57.798 37.037 0.00 0.00 0.00 1.90
681 682 8.484214 TGTATTATCTCAGGCTCTCTTATTGT 57.516 34.615 0.00 0.00 0.00 2.71
682 683 9.588096 TGTATTATCTCAGGCTCTCTTATTGTA 57.412 33.333 0.00 0.00 0.00 2.41
685 686 8.712228 TTATCTCAGGCTCTCTTATTGTATCA 57.288 34.615 0.00 0.00 0.00 2.15
686 687 7.609097 ATCTCAGGCTCTCTTATTGTATCAA 57.391 36.000 0.00 0.00 0.00 2.57
687 688 6.810911 TCTCAGGCTCTCTTATTGTATCAAC 58.189 40.000 0.00 0.00 0.00 3.18
688 689 5.592054 TCAGGCTCTCTTATTGTATCAACG 58.408 41.667 0.00 0.00 0.00 4.10
689 690 5.127194 TCAGGCTCTCTTATTGTATCAACGT 59.873 40.000 0.00 0.00 0.00 3.99
690 691 5.233050 CAGGCTCTCTTATTGTATCAACGTG 59.767 44.000 0.00 0.00 0.00 4.49
691 692 4.508124 GGCTCTCTTATTGTATCAACGTGG 59.492 45.833 0.00 0.00 0.00 4.94
692 693 5.348986 GCTCTCTTATTGTATCAACGTGGA 58.651 41.667 0.00 0.00 0.00 4.02
693 694 5.232414 GCTCTCTTATTGTATCAACGTGGAC 59.768 44.000 0.00 0.00 0.00 4.02
694 695 6.275494 TCTCTTATTGTATCAACGTGGACA 57.725 37.500 0.00 0.00 0.00 4.02
695 696 6.097356 TCTCTTATTGTATCAACGTGGACAC 58.903 40.000 0.00 0.00 0.00 3.67
738 739 3.622166 ACCCCACTAATAACAACTCGG 57.378 47.619 0.00 0.00 0.00 4.63
815 819 1.670590 CAAAATTCCCGCCAGCCAA 59.329 52.632 0.00 0.00 0.00 4.52
919 925 1.068055 CCGCCTATATACTTTCGCCGT 60.068 52.381 0.00 0.00 0.00 5.68
923 929 2.824341 CCTATATACTTTCGCCGTCCCT 59.176 50.000 0.00 0.00 0.00 4.20
927 934 4.436998 CTTTCGCCGTCCCTCGCT 62.437 66.667 0.00 0.00 38.35 4.93
965 1003 3.011517 CCCACCTCCCACTCCCAG 61.012 72.222 0.00 0.00 0.00 4.45
966 1004 3.721706 CCACCTCCCACTCCCAGC 61.722 72.222 0.00 0.00 0.00 4.85
967 1005 4.087892 CACCTCCCACTCCCAGCG 62.088 72.222 0.00 0.00 0.00 5.18
968 1006 4.316823 ACCTCCCACTCCCAGCGA 62.317 66.667 0.00 0.00 0.00 4.93
969 1007 3.003173 CCTCCCACTCCCAGCGAA 61.003 66.667 0.00 0.00 0.00 4.70
970 1008 2.592993 CCTCCCACTCCCAGCGAAA 61.593 63.158 0.00 0.00 0.00 3.46
971 1009 1.376037 CTCCCACTCCCAGCGAAAC 60.376 63.158 0.00 0.00 0.00 2.78
972 1010 2.111999 CTCCCACTCCCAGCGAAACA 62.112 60.000 0.00 0.00 0.00 2.83
989 1053 3.673597 ACCCCGCTCCCTCTCTCA 61.674 66.667 0.00 0.00 0.00 3.27
996 1061 1.521616 CTCCCTCTCTCAAGCAGCC 59.478 63.158 0.00 0.00 0.00 4.85
1449 1538 1.416401 GTCACCAAGTTCACCTCCTCA 59.584 52.381 0.00 0.00 0.00 3.86
1497 1631 3.601443 AGTTGGTCTCTGTATCTGCAC 57.399 47.619 0.00 0.00 0.00 4.57
1500 1634 1.827344 TGGTCTCTGTATCTGCACCTG 59.173 52.381 0.00 0.00 0.00 4.00
1501 1635 1.827969 GGTCTCTGTATCTGCACCTGT 59.172 52.381 0.00 0.00 0.00 4.00
1502 1636 3.024547 GGTCTCTGTATCTGCACCTGTA 58.975 50.000 0.00 0.00 0.00 2.74
1606 2554 5.708230 TGGTTGTAAGAACTGAAGTTGTTGT 59.292 36.000 14.04 0.00 40.93 3.32
1607 2555 6.027749 GGTTGTAAGAACTGAAGTTGTTGTG 58.972 40.000 14.04 0.00 40.93 3.33
1624 2572 5.555966 TGTTGTGTTTGGCAGACTGATATA 58.444 37.500 6.65 0.00 0.00 0.86
1625 2573 6.179756 TGTTGTGTTTGGCAGACTGATATAT 58.820 36.000 6.65 0.00 0.00 0.86
1722 2688 9.971922 ACTCTTCTGAAATTGAATTTTAGTTGG 57.028 29.630 18.15 11.43 37.22 3.77
1754 2720 7.281549 TCGTGTTATTATCTGTGAGTAGTGCTA 59.718 37.037 0.00 0.00 0.00 3.49
1781 4121 5.417580 TCACTGTTAATTTATGGGAGTTGCC 59.582 40.000 0.00 0.00 0.00 4.52
1785 4125 5.654650 TGTTAATTTATGGGAGTTGCCGAAT 59.345 36.000 0.00 0.00 37.63 3.34
1796 4136 3.053291 GCCGAATGCCCGTTGACA 61.053 61.111 0.00 0.00 0.00 3.58
1846 4203 6.406370 TCTGTGATGATTTAGAAATGACGGT 58.594 36.000 0.00 0.00 0.00 4.83
1859 4216 1.674359 TGACGGTGCATTTCTGTGTT 58.326 45.000 0.00 0.00 0.00 3.32
1869 4226 3.742369 GCATTTCTGTGTTGGTGATTTGG 59.258 43.478 0.00 0.00 0.00 3.28
1877 4234 6.037786 TGTGTTGGTGATTTGGTTTTTACA 57.962 33.333 0.00 0.00 0.00 2.41
1879 4236 6.103330 GTGTTGGTGATTTGGTTTTTACAGT 58.897 36.000 0.00 0.00 0.00 3.55
1880 4237 7.093902 TGTGTTGGTGATTTGGTTTTTACAGTA 60.094 33.333 0.00 0.00 0.00 2.74
1881 4238 7.221259 GTGTTGGTGATTTGGTTTTTACAGTAC 59.779 37.037 0.00 0.00 0.00 2.73
1885 4242 7.446013 TGGTGATTTGGTTTTTACAGTACTAGG 59.554 37.037 0.00 0.00 0.00 3.02
1886 4243 7.446319 GGTGATTTGGTTTTTACAGTACTAGGT 59.554 37.037 0.00 0.00 0.00 3.08
1888 4245 9.715121 TGATTTGGTTTTTACAGTACTAGGTAG 57.285 33.333 0.00 0.00 0.00 3.18
1925 4282 3.107407 GGCAAATGCAAGTTGTTTTTGC 58.893 40.909 29.72 29.72 45.01 3.68
1931 4288 3.302906 GCAAGTTGTTTTTGCGGAAAG 57.697 42.857 1.41 0.00 41.16 2.62
1945 4302 4.130857 TGCGGAAAGTGAAATGTGAGTTA 58.869 39.130 0.00 0.00 0.00 2.24
1948 4305 5.407387 GCGGAAAGTGAAATGTGAGTTACTA 59.593 40.000 0.00 0.00 0.00 1.82
1961 4318 5.989168 TGTGAGTTACTACTGTCCAATTGTG 59.011 40.000 4.43 0.00 33.84 3.33
1962 4319 4.994852 TGAGTTACTACTGTCCAATTGTGC 59.005 41.667 4.43 0.00 33.84 4.57
1963 4320 5.221641 TGAGTTACTACTGTCCAATTGTGCT 60.222 40.000 4.43 0.00 33.84 4.40
1964 4321 4.997395 AGTTACTACTGTCCAATTGTGCTG 59.003 41.667 4.43 3.65 31.99 4.41
1965 4322 2.154462 ACTACTGTCCAATTGTGCTGC 58.846 47.619 4.43 0.00 0.00 5.25
1994 4359 7.913674 AAACAAGATAGAGCGATTCTTCTTT 57.086 32.000 0.00 0.00 37.36 2.52
2002 4367 8.723942 ATAGAGCGATTCTTCTTTGTGTTATT 57.276 30.769 0.00 0.00 37.36 1.40
2005 4370 4.558860 GCGATTCTTCTTTGTGTTATTGCC 59.441 41.667 0.00 0.00 0.00 4.52
2010 4375 3.658757 TCTTTGTGTTATTGCCTTGCC 57.341 42.857 0.00 0.00 0.00 4.52
2027 4392 0.944386 GCCGCTGTCAACTGAAGAAA 59.056 50.000 0.00 0.00 0.00 2.52
2028 4393 1.333619 GCCGCTGTCAACTGAAGAAAA 59.666 47.619 0.00 0.00 0.00 2.29
2029 4394 2.854805 GCCGCTGTCAACTGAAGAAAAC 60.855 50.000 0.00 0.00 0.00 2.43
2030 4395 2.614057 CCGCTGTCAACTGAAGAAAACT 59.386 45.455 0.00 0.00 0.00 2.66
2031 4396 3.065371 CCGCTGTCAACTGAAGAAAACTT 59.935 43.478 0.00 0.00 0.00 2.66
2032 4397 4.031028 CGCTGTCAACTGAAGAAAACTTG 58.969 43.478 0.00 0.00 0.00 3.16
2035 4400 3.761218 TGTCAACTGAAGAAAACTTGGCA 59.239 39.130 0.00 0.00 0.00 4.92
2037 4402 3.118542 CAACTGAAGAAAACTTGGCAGC 58.881 45.455 0.00 0.00 0.00 5.25
2038 4403 2.659428 ACTGAAGAAAACTTGGCAGCT 58.341 42.857 0.00 0.00 0.00 4.24
2039 4404 2.360165 ACTGAAGAAAACTTGGCAGCTG 59.640 45.455 10.11 10.11 0.00 4.24
2040 4405 1.067516 TGAAGAAAACTTGGCAGCTGC 59.932 47.619 30.88 30.88 41.14 5.25
2041 4406 1.339291 GAAGAAAACTTGGCAGCTGCT 59.661 47.619 35.82 16.47 41.70 4.24
2042 4407 0.672342 AGAAAACTTGGCAGCTGCTG 59.328 50.000 35.82 26.59 41.70 4.41
2053 4418 4.689484 GCTGCTGCTTCAGACTCA 57.311 55.556 8.53 0.00 36.19 3.41
2054 4419 2.458162 GCTGCTGCTTCAGACTCAG 58.542 57.895 8.53 0.00 36.19 3.35
2055 4420 0.037512 GCTGCTGCTTCAGACTCAGA 60.038 55.000 8.53 0.00 36.19 3.27
2059 4424 1.712401 CTGCTTCAGACTCAGACTGC 58.288 55.000 0.00 0.00 35.61 4.40
2065 4430 0.179150 CAGACTCAGACTGCGGTAGC 60.179 60.000 0.00 0.00 45.41 3.58
2075 4440 4.100981 GCGGTAGCAGCTTCAGAG 57.899 61.111 0.00 0.00 44.35 3.35
2116 4516 0.451792 CTGCTTCTTGCGCTCGTTTC 60.452 55.000 9.73 0.00 46.63 2.78
2117 4517 1.157257 TGCTTCTTGCGCTCGTTTCA 61.157 50.000 9.73 0.00 46.63 2.69
2118 4518 0.041312 GCTTCTTGCGCTCGTTTCAA 60.041 50.000 9.73 0.00 0.00 2.69
2119 4519 1.663494 CTTCTTGCGCTCGTTTCAAC 58.337 50.000 9.73 0.00 0.00 3.18
2120 4520 1.261619 CTTCTTGCGCTCGTTTCAACT 59.738 47.619 9.73 0.00 0.00 3.16
2121 4521 1.295792 TCTTGCGCTCGTTTCAACTT 58.704 45.000 9.73 0.00 0.00 2.66
2122 4522 1.668751 TCTTGCGCTCGTTTCAACTTT 59.331 42.857 9.73 0.00 0.00 2.66
2129 4529 2.349912 GCTCGTTTCAACTTTCAGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
2130 4530 3.134458 CTCGTTTCAACTTTCAGGCTCT 58.866 45.455 0.00 0.00 0.00 4.09
2145 4545 6.173427 TCAGGCTCTGTATAATTACATGCA 57.827 37.500 0.00 0.00 38.42 3.96
2146 4546 6.772605 TCAGGCTCTGTATAATTACATGCAT 58.227 36.000 0.00 0.00 38.42 3.96
2147 4547 6.652062 TCAGGCTCTGTATAATTACATGCATG 59.348 38.462 25.09 25.09 43.18 4.06
2149 4549 5.413833 GGCTCTGTATAATTACATGCATGCT 59.586 40.000 26.53 15.56 38.42 3.79
2150 4550 6.312487 GCTCTGTATAATTACATGCATGCTG 58.688 40.000 26.53 16.29 37.68 4.41
2151 4551 6.622245 GCTCTGTATAATTACATGCATGCTGG 60.622 42.308 26.53 13.20 37.68 4.85
2152 4552 5.181811 TCTGTATAATTACATGCATGCTGGC 59.818 40.000 26.53 9.21 37.68 4.85
2153 4553 3.564235 ATAATTACATGCATGCTGGCG 57.436 42.857 26.53 6.95 36.28 5.69
2171 4571 1.334059 GCGTGTGTTCTGACCATGTTG 60.334 52.381 0.00 0.00 0.00 3.33
2186 4586 4.202567 ACCATGTTGTCCCACTGTAAGAAT 60.203 41.667 0.00 0.00 37.43 2.40
2192 4592 2.488153 GTCCCACTGTAAGAATTGTGCC 59.512 50.000 0.00 0.00 37.43 5.01
2200 4600 3.823873 TGTAAGAATTGTGCCGGAATTGT 59.176 39.130 5.05 0.00 0.00 2.71
2201 4601 3.302365 AAGAATTGTGCCGGAATTGTG 57.698 42.857 5.05 0.00 0.00 3.33
2202 4602 1.067635 AGAATTGTGCCGGAATTGTGC 60.068 47.619 5.05 0.00 0.00 4.57
2203 4603 0.968405 AATTGTGCCGGAATTGTGCT 59.032 45.000 5.05 0.00 0.00 4.40
2204 4604 0.968405 ATTGTGCCGGAATTGTGCTT 59.032 45.000 5.05 0.00 0.00 3.91
2205 4605 0.031857 TTGTGCCGGAATTGTGCTTG 59.968 50.000 5.05 0.00 0.00 4.01
2206 4606 1.734117 GTGCCGGAATTGTGCTTGC 60.734 57.895 5.05 0.00 0.00 4.01
2207 4607 2.198969 TGCCGGAATTGTGCTTGCA 61.199 52.632 5.05 0.00 0.00 4.08
2208 4608 1.216178 GCCGGAATTGTGCTTGCAT 59.784 52.632 5.05 0.00 0.00 3.96
2209 4609 0.390209 GCCGGAATTGTGCTTGCATT 60.390 50.000 5.05 0.00 0.00 3.56
2210 4610 1.352114 CCGGAATTGTGCTTGCATTG 58.648 50.000 0.00 0.00 0.00 2.82
2211 4611 1.352114 CGGAATTGTGCTTGCATTGG 58.648 50.000 0.00 0.00 0.00 3.16
2212 4612 1.067706 CGGAATTGTGCTTGCATTGGA 60.068 47.619 0.00 0.00 0.00 3.53
2213 4613 2.417651 CGGAATTGTGCTTGCATTGGAT 60.418 45.455 0.00 0.00 0.00 3.41
2217 4617 2.203470 TGTGCTTGCATTGGATGAGA 57.797 45.000 0.00 0.00 0.00 3.27
2221 4621 3.691118 GTGCTTGCATTGGATGAGAGTTA 59.309 43.478 0.00 0.00 0.00 2.24
2235 4635 5.697473 TGAGAGTTACTGTCAGAGAGTTG 57.303 43.478 8.17 0.00 30.30 3.16
2240 4640 2.918712 ACTGTCAGAGAGTTGTTGGG 57.081 50.000 6.91 0.00 0.00 4.12
2269 4676 8.348507 CAGATTCCTTAGATACCAAAATCTTGC 58.651 37.037 0.00 0.00 37.41 4.01
2306 4713 6.752168 AGTTTGTTCTTGGATTCAAATCTGG 58.248 36.000 2.96 0.00 35.73 3.86
2316 4723 9.618890 CTTGGATTCAAATCTGGTTCTAATCTA 57.381 33.333 2.96 1.10 35.73 1.98
2323 4730 7.336931 TCAAATCTGGTTCTAATCTAAACCTGC 59.663 37.037 5.91 0.00 44.33 4.85
2324 4731 5.099042 TCTGGTTCTAATCTAAACCTGCC 57.901 43.478 5.91 0.00 44.33 4.85
2348 4755 0.729140 CACGAATCAAGCAAACGCCC 60.729 55.000 0.00 0.00 0.00 6.13
2382 4789 3.119388 TCCCTCGTACATCAAACTTACCG 60.119 47.826 0.00 0.00 0.00 4.02
2384 4791 3.855950 CCTCGTACATCAAACTTACCGAC 59.144 47.826 0.00 0.00 0.00 4.79
2385 4792 3.836949 TCGTACATCAAACTTACCGACC 58.163 45.455 0.00 0.00 0.00 4.79
2386 4793 3.255395 TCGTACATCAAACTTACCGACCA 59.745 43.478 0.00 0.00 0.00 4.02
2387 4794 3.611113 CGTACATCAAACTTACCGACCAG 59.389 47.826 0.00 0.00 0.00 4.00
2388 4795 3.764237 ACATCAAACTTACCGACCAGT 57.236 42.857 0.00 0.00 0.00 4.00
2389 4796 3.660865 ACATCAAACTTACCGACCAGTC 58.339 45.455 0.00 0.00 0.00 3.51
2390 4797 3.070446 ACATCAAACTTACCGACCAGTCA 59.930 43.478 0.00 0.00 0.00 3.41
2391 4798 4.253685 CATCAAACTTACCGACCAGTCAT 58.746 43.478 0.00 0.00 0.00 3.06
2392 4799 3.921677 TCAAACTTACCGACCAGTCATC 58.078 45.455 0.00 0.00 0.00 2.92
2393 4800 2.649331 AACTTACCGACCAGTCATCG 57.351 50.000 0.00 0.00 39.33 3.84
2394 4801 1.542492 ACTTACCGACCAGTCATCGT 58.458 50.000 0.00 0.00 37.90 3.73
2395 4802 1.471684 ACTTACCGACCAGTCATCGTC 59.528 52.381 0.00 0.00 37.90 4.20
2397 4804 1.758936 TACCGACCAGTCATCGTCAT 58.241 50.000 0.00 0.00 37.90 3.06
2398 4805 0.895530 ACCGACCAGTCATCGTCATT 59.104 50.000 0.00 0.00 37.90 2.57
2401 4808 1.656652 GACCAGTCATCGTCATTGGG 58.343 55.000 0.00 0.00 33.20 4.12
2402 4809 1.207089 GACCAGTCATCGTCATTGGGA 59.793 52.381 0.00 0.00 33.20 4.37
2404 4811 2.283298 CCAGTCATCGTCATTGGGAAG 58.717 52.381 0.00 0.00 0.00 3.46
2405 4812 2.093500 CCAGTCATCGTCATTGGGAAGA 60.093 50.000 0.00 0.00 38.39 2.87
2407 4814 3.620374 CAGTCATCGTCATTGGGAAGAAG 59.380 47.826 0.00 0.00 37.55 2.85
2408 4815 2.939103 GTCATCGTCATTGGGAAGAAGG 59.061 50.000 0.00 0.00 37.55 3.46
2410 4817 0.035439 TCGTCATTGGGAAGAAGGGC 60.035 55.000 0.00 0.00 30.77 5.19
2411 4818 1.369091 CGTCATTGGGAAGAAGGGCG 61.369 60.000 0.00 0.00 0.00 6.13
2412 4819 0.035439 GTCATTGGGAAGAAGGGCGA 60.035 55.000 0.00 0.00 0.00 5.54
2413 4820 0.035439 TCATTGGGAAGAAGGGCGAC 60.035 55.000 0.00 0.00 0.00 5.19
2425 5237 4.379174 GGCGACCTTCTGAAAGCA 57.621 55.556 0.00 0.00 0.00 3.91
2426 5238 2.859992 GGCGACCTTCTGAAAGCAT 58.140 52.632 0.00 0.00 0.00 3.79
2427 5239 0.729690 GGCGACCTTCTGAAAGCATC 59.270 55.000 0.00 0.00 0.00 3.91
2428 5240 0.729690 GCGACCTTCTGAAAGCATCC 59.270 55.000 0.00 0.00 0.00 3.51
2429 5241 1.373570 CGACCTTCTGAAAGCATCCC 58.626 55.000 0.00 0.00 0.00 3.85
2430 5242 1.373570 GACCTTCTGAAAGCATCCCG 58.626 55.000 0.00 0.00 0.00 5.14
2431 5243 0.678048 ACCTTCTGAAAGCATCCCGC 60.678 55.000 0.00 0.00 42.91 6.13
2449 5261 4.021925 GCCACCTCGGACAGCCTT 62.022 66.667 0.00 0.00 36.56 4.35
2450 5262 2.750350 CCACCTCGGACAGCCTTT 59.250 61.111 0.00 0.00 36.56 3.11
2451 5263 1.073199 CCACCTCGGACAGCCTTTT 59.927 57.895 0.00 0.00 36.56 2.27
2452 5264 0.323629 CCACCTCGGACAGCCTTTTA 59.676 55.000 0.00 0.00 36.56 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.079750 GCCACTGAAGACGGGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
32 33 2.636412 CGCCACTGAAGACGGGAGA 61.636 63.158 0.00 0.00 0.00 3.71
33 34 2.125912 CGCCACTGAAGACGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
34 35 3.691342 CCGCCACTGAAGACGGGA 61.691 66.667 0.00 0.00 41.95 5.14
35 36 3.649277 CTCCGCCACTGAAGACGGG 62.649 68.421 0.00 0.00 45.65 5.28
36 37 2.125912 CTCCGCCACTGAAGACGG 60.126 66.667 0.00 0.00 46.97 4.79
37 38 1.934220 TAGCTCCGCCACTGAAGACG 61.934 60.000 0.00 0.00 0.00 4.18
38 39 0.461961 ATAGCTCCGCCACTGAAGAC 59.538 55.000 0.00 0.00 0.00 3.01
39 40 0.461548 CATAGCTCCGCCACTGAAGA 59.538 55.000 0.00 0.00 0.00 2.87
40 41 0.176680 ACATAGCTCCGCCACTGAAG 59.823 55.000 0.00 0.00 0.00 3.02
41 42 0.613260 AACATAGCTCCGCCACTGAA 59.387 50.000 0.00 0.00 0.00 3.02
42 43 0.108186 CAACATAGCTCCGCCACTGA 60.108 55.000 0.00 0.00 0.00 3.41
43 44 1.091771 CCAACATAGCTCCGCCACTG 61.092 60.000 0.00 0.00 0.00 3.66
44 45 1.221840 CCAACATAGCTCCGCCACT 59.778 57.895 0.00 0.00 0.00 4.00
45 46 1.819632 CCCAACATAGCTCCGCCAC 60.820 63.158 0.00 0.00 0.00 5.01
46 47 2.589540 CCCAACATAGCTCCGCCA 59.410 61.111 0.00 0.00 0.00 5.69
47 48 2.203209 CCCCAACATAGCTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
48 49 2.203209 CCCCCAACATAGCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
49 50 2.203209 GCCCCCAACATAGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
50 51 1.152881 CTGCCCCCAACATAGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
51 52 1.152881 CCTGCCCCCAACATAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
52 53 2.693871 CCCTGCCCCCAACATAGCT 61.694 63.158 0.00 0.00 0.00 3.32
53 54 2.123726 CCCTGCCCCCAACATAGC 60.124 66.667 0.00 0.00 0.00 2.97
54 55 2.603008 CCCCTGCCCCCAACATAG 59.397 66.667 0.00 0.00 0.00 2.23
55 56 3.026847 CCCCCTGCCCCCAACATA 61.027 66.667 0.00 0.00 0.00 2.29
86 87 0.105349 AATTCATCCATGGCTGGGGG 60.105 55.000 15.42 0.00 43.34 5.40
87 88 2.158415 AGTAATTCATCCATGGCTGGGG 60.158 50.000 15.42 0.00 43.34 4.96
88 89 2.889045 CAGTAATTCATCCATGGCTGGG 59.111 50.000 15.42 0.89 43.34 4.45
89 90 2.889045 CCAGTAATTCATCCATGGCTGG 59.111 50.000 15.42 14.68 44.64 4.85
90 91 3.819337 CTCCAGTAATTCATCCATGGCTG 59.181 47.826 9.41 9.41 0.00 4.85
91 92 3.718434 TCTCCAGTAATTCATCCATGGCT 59.282 43.478 6.96 0.00 0.00 4.75
92 93 4.090761 TCTCCAGTAATTCATCCATGGC 57.909 45.455 6.96 0.00 0.00 4.40
93 94 7.592885 AAAATCTCCAGTAATTCATCCATGG 57.407 36.000 4.97 4.97 0.00 3.66
117 118 8.568617 AGATCTAATCTAAGCCTCCCTAAAAA 57.431 34.615 0.00 0.00 38.00 1.94
118 119 8.568617 AAGATCTAATCTAAGCCTCCCTAAAA 57.431 34.615 0.00 0.00 39.08 1.52
119 120 8.568617 AAAGATCTAATCTAAGCCTCCCTAAA 57.431 34.615 0.00 0.00 39.08 1.85
120 121 8.568617 AAAAGATCTAATCTAAGCCTCCCTAA 57.431 34.615 0.00 0.00 39.08 2.69
121 122 9.315363 CTAAAAGATCTAATCTAAGCCTCCCTA 57.685 37.037 0.00 0.00 39.08 3.53
122 123 7.256511 GCTAAAAGATCTAATCTAAGCCTCCCT 60.257 40.741 0.00 0.00 39.08 4.20
123 124 6.876789 GCTAAAAGATCTAATCTAAGCCTCCC 59.123 42.308 0.00 0.00 39.08 4.30
124 125 7.445945 TGCTAAAAGATCTAATCTAAGCCTCC 58.554 38.462 0.00 0.00 39.08 4.30
125 126 9.500785 AATGCTAAAAGATCTAATCTAAGCCTC 57.499 33.333 0.00 0.00 39.08 4.70
126 127 9.859152 AAATGCTAAAAGATCTAATCTAAGCCT 57.141 29.630 0.00 0.00 39.08 4.58
127 128 9.890352 CAAATGCTAAAAGATCTAATCTAAGCC 57.110 33.333 0.00 0.00 39.08 4.35
128 129 9.890352 CCAAATGCTAAAAGATCTAATCTAAGC 57.110 33.333 0.00 0.76 39.08 3.09
129 130 9.890352 GCCAAATGCTAAAAGATCTAATCTAAG 57.110 33.333 0.00 0.00 36.24 2.18
130 131 8.850156 GGCCAAATGCTAAAAGATCTAATCTAA 58.150 33.333 0.00 0.00 38.32 2.10
131 132 7.448469 GGGCCAAATGCTAAAAGATCTAATCTA 59.552 37.037 4.39 0.00 38.32 1.98
132 133 6.266330 GGGCCAAATGCTAAAAGATCTAATCT 59.734 38.462 4.39 0.00 40.02 2.40
133 134 6.450545 GGGCCAAATGCTAAAAGATCTAATC 58.549 40.000 4.39 0.00 40.92 1.75
134 135 5.305386 GGGGCCAAATGCTAAAAGATCTAAT 59.695 40.000 4.39 0.00 40.92 1.73
135 136 4.649218 GGGGCCAAATGCTAAAAGATCTAA 59.351 41.667 4.39 0.00 40.92 2.10
136 137 4.215109 GGGGCCAAATGCTAAAAGATCTA 58.785 43.478 4.39 0.00 40.92 1.98
137 138 3.033909 GGGGCCAAATGCTAAAAGATCT 58.966 45.455 4.39 0.00 40.92 2.75
138 139 2.103094 GGGGGCCAAATGCTAAAAGATC 59.897 50.000 4.39 0.00 40.92 2.75
139 140 2.118679 GGGGGCCAAATGCTAAAAGAT 58.881 47.619 4.39 0.00 40.92 2.40
140 141 1.567357 GGGGGCCAAATGCTAAAAGA 58.433 50.000 4.39 0.00 40.92 2.52
156 157 2.899256 ACAAATCATCAGTGTTTGGGGG 59.101 45.455 8.34 0.00 37.20 5.40
157 158 3.321682 ACACAAATCATCAGTGTTTGGGG 59.678 43.478 10.05 4.57 43.40 4.96
158 159 4.589216 ACACAAATCATCAGTGTTTGGG 57.411 40.909 5.00 5.00 43.40 4.12
164 165 2.493278 GGGGGAACACAAATCATCAGTG 59.507 50.000 0.00 0.00 39.12 3.66
165 166 2.807676 GGGGGAACACAAATCATCAGT 58.192 47.619 0.00 0.00 0.00 3.41
182 183 0.254747 TAGCCGAAAATCACTGGGGG 59.745 55.000 0.00 0.00 0.00 5.40
183 184 1.668419 CTAGCCGAAAATCACTGGGG 58.332 55.000 0.00 0.00 0.00 4.96
184 185 1.017387 GCTAGCCGAAAATCACTGGG 58.983 55.000 2.29 0.00 0.00 4.45
185 186 1.936547 GAGCTAGCCGAAAATCACTGG 59.063 52.381 12.13 0.00 0.00 4.00
186 187 1.936547 GGAGCTAGCCGAAAATCACTG 59.063 52.381 12.13 0.00 0.00 3.66
187 188 2.317530 GGAGCTAGCCGAAAATCACT 57.682 50.000 12.13 0.00 0.00 3.41
203 204 2.341101 ACGACTGGTAGTGGCGGAG 61.341 63.158 0.00 0.00 0.00 4.63
204 205 2.282674 ACGACTGGTAGTGGCGGA 60.283 61.111 0.00 0.00 0.00 5.54
205 206 2.126071 CACGACTGGTAGTGGCGG 60.126 66.667 6.17 0.00 33.44 6.13
206 207 2.809601 GCACGACTGGTAGTGGCG 60.810 66.667 13.91 0.00 36.82 5.69
207 208 2.027625 GTGCACGACTGGTAGTGGC 61.028 63.158 0.00 8.15 36.82 5.01
208 209 0.885879 TAGTGCACGACTGGTAGTGG 59.114 55.000 12.01 0.24 36.82 4.00
209 210 2.717580 TTAGTGCACGACTGGTAGTG 57.282 50.000 12.01 9.10 38.88 2.74
210 211 3.738830 TTTTAGTGCACGACTGGTAGT 57.261 42.857 12.01 0.00 35.96 2.73
250 251 2.383855 TGCCAGTGCACTAACCTTTTT 58.616 42.857 21.20 0.00 44.23 1.94
251 252 2.065899 TGCCAGTGCACTAACCTTTT 57.934 45.000 21.20 0.00 44.23 2.27
252 253 3.819245 TGCCAGTGCACTAACCTTT 57.181 47.368 21.20 0.00 44.23 3.11
262 263 1.462616 TATTGATGTGGTGCCAGTGC 58.537 50.000 0.00 0.00 38.26 4.40
263 264 3.817084 CCTATATTGATGTGGTGCCAGTG 59.183 47.826 0.00 0.00 0.00 3.66
264 265 3.459598 ACCTATATTGATGTGGTGCCAGT 59.540 43.478 0.00 0.00 0.00 4.00
265 266 4.090761 ACCTATATTGATGTGGTGCCAG 57.909 45.455 0.00 0.00 0.00 4.85
266 267 4.206375 CAACCTATATTGATGTGGTGCCA 58.794 43.478 0.00 0.00 0.00 4.92
267 268 4.207165 ACAACCTATATTGATGTGGTGCC 58.793 43.478 0.00 0.00 33.57 5.01
268 269 4.881273 TGACAACCTATATTGATGTGGTGC 59.119 41.667 0.00 0.00 33.57 5.01
269 270 5.879777 TGTGACAACCTATATTGATGTGGTG 59.120 40.000 0.00 0.00 33.57 4.17
270 271 6.061022 TGTGACAACCTATATTGATGTGGT 57.939 37.500 0.00 0.00 33.57 4.16
271 272 7.389803 TTTGTGACAACCTATATTGATGTGG 57.610 36.000 0.00 0.00 33.57 4.17
272 273 9.859427 ATTTTTGTGACAACCTATATTGATGTG 57.141 29.630 0.00 0.00 33.57 3.21
281 282 9.829507 TTGATTTGAATTTTTGTGACAACCTAT 57.170 25.926 0.00 0.00 0.00 2.57
282 283 9.658799 TTTGATTTGAATTTTTGTGACAACCTA 57.341 25.926 0.00 0.00 0.00 3.08
283 284 8.558973 TTTGATTTGAATTTTTGTGACAACCT 57.441 26.923 0.00 0.00 0.00 3.50
284 285 9.786105 ATTTTGATTTGAATTTTTGTGACAACC 57.214 25.926 0.00 0.00 0.00 3.77
287 288 9.699985 CGAATTTTGATTTGAATTTTTGTGACA 57.300 25.926 0.00 0.00 0.00 3.58
288 289 9.913451 TCGAATTTTGATTTGAATTTTTGTGAC 57.087 25.926 0.00 0.00 0.00 3.67
299 300 8.637704 CGATCAATGTTTCGAATTTTGATTTGA 58.362 29.630 21.61 14.46 37.20 2.69
300 301 8.637704 TCGATCAATGTTTCGAATTTTGATTTG 58.362 29.630 21.61 18.39 41.06 2.32
301 302 8.741101 TCGATCAATGTTTCGAATTTTGATTT 57.259 26.923 21.61 9.81 41.06 2.17
302 303 7.485913 CCTCGATCAATGTTTCGAATTTTGATT 59.514 33.333 21.61 12.07 43.14 2.57
303 304 6.968904 CCTCGATCAATGTTTCGAATTTTGAT 59.031 34.615 21.18 21.18 43.14 2.57
304 305 6.314018 CCTCGATCAATGTTTCGAATTTTGA 58.686 36.000 15.75 15.75 43.14 2.69
305 306 5.003778 GCCTCGATCAATGTTTCGAATTTTG 59.996 40.000 0.00 3.90 43.14 2.44
306 307 5.095490 GCCTCGATCAATGTTTCGAATTTT 58.905 37.500 0.00 0.00 43.14 1.82
307 308 4.155826 TGCCTCGATCAATGTTTCGAATTT 59.844 37.500 0.00 0.00 43.14 1.82
308 309 3.689161 TGCCTCGATCAATGTTTCGAATT 59.311 39.130 0.00 0.00 43.14 2.17
309 310 3.063997 GTGCCTCGATCAATGTTTCGAAT 59.936 43.478 0.00 0.00 43.14 3.34
310 311 2.415168 GTGCCTCGATCAATGTTTCGAA 59.585 45.455 10.87 0.00 43.14 3.71
311 312 1.999735 GTGCCTCGATCAATGTTTCGA 59.000 47.619 9.71 9.71 41.70 3.71
312 313 1.731709 TGTGCCTCGATCAATGTTTCG 59.268 47.619 0.00 2.85 36.72 3.46
313 314 3.829886 TTGTGCCTCGATCAATGTTTC 57.170 42.857 0.00 0.00 0.00 2.78
314 315 4.582701 TTTTGTGCCTCGATCAATGTTT 57.417 36.364 0.00 0.00 0.00 2.83
315 316 4.582701 TTTTTGTGCCTCGATCAATGTT 57.417 36.364 0.00 0.00 0.00 2.71
316 317 4.218200 TGATTTTTGTGCCTCGATCAATGT 59.782 37.500 0.00 0.00 0.00 2.71
317 318 4.560035 GTGATTTTTGTGCCTCGATCAATG 59.440 41.667 0.00 0.00 0.00 2.82
318 319 4.218200 TGTGATTTTTGTGCCTCGATCAAT 59.782 37.500 0.00 0.00 0.00 2.57
319 320 3.567585 TGTGATTTTTGTGCCTCGATCAA 59.432 39.130 0.00 0.00 0.00 2.57
320 321 3.145286 TGTGATTTTTGTGCCTCGATCA 58.855 40.909 0.00 0.00 0.00 2.92
321 322 3.829886 TGTGATTTTTGTGCCTCGATC 57.170 42.857 0.00 0.00 0.00 3.69
322 323 4.582701 TTTGTGATTTTTGTGCCTCGAT 57.417 36.364 0.00 0.00 0.00 3.59
323 324 4.582701 ATTTGTGATTTTTGTGCCTCGA 57.417 36.364 0.00 0.00 0.00 4.04
324 325 5.233902 TCAAATTTGTGATTTTTGTGCCTCG 59.766 36.000 17.47 0.00 33.24 4.63
325 326 6.036953 TGTCAAATTTGTGATTTTTGTGCCTC 59.963 34.615 17.47 0.00 33.24 4.70
326 327 5.879223 TGTCAAATTTGTGATTTTTGTGCCT 59.121 32.000 17.47 0.00 33.24 4.75
327 328 5.964751 GTGTCAAATTTGTGATTTTTGTGCC 59.035 36.000 17.47 0.00 33.24 5.01
328 329 6.541086 TGTGTCAAATTTGTGATTTTTGTGC 58.459 32.000 17.47 0.00 33.24 4.57
329 330 8.945758 TTTGTGTCAAATTTGTGATTTTTGTG 57.054 26.923 17.47 0.00 33.24 3.33
346 347 9.332502 ACTTGTGTTATGTACTATTTTGTGTCA 57.667 29.630 0.00 0.00 0.00 3.58
348 349 9.944663 CAACTTGTGTTATGTACTATTTTGTGT 57.055 29.630 0.00 0.00 34.60 3.72
349 350 9.393249 CCAACTTGTGTTATGTACTATTTTGTG 57.607 33.333 0.00 0.00 34.60 3.33
350 351 8.573035 CCCAACTTGTGTTATGTACTATTTTGT 58.427 33.333 0.00 0.00 34.60 2.83
351 352 7.540745 GCCCAACTTGTGTTATGTACTATTTTG 59.459 37.037 0.00 0.00 34.60 2.44
352 353 7.450323 AGCCCAACTTGTGTTATGTACTATTTT 59.550 33.333 0.00 0.00 34.60 1.82
353 354 6.946009 AGCCCAACTTGTGTTATGTACTATTT 59.054 34.615 0.00 0.00 34.60 1.40
354 355 6.481643 AGCCCAACTTGTGTTATGTACTATT 58.518 36.000 0.00 0.00 34.60 1.73
355 356 6.062258 AGCCCAACTTGTGTTATGTACTAT 57.938 37.500 0.00 0.00 34.60 2.12
356 357 5.492855 AGCCCAACTTGTGTTATGTACTA 57.507 39.130 0.00 0.00 34.60 1.82
357 358 4.367039 AGCCCAACTTGTGTTATGTACT 57.633 40.909 0.00 0.00 34.60 2.73
358 359 4.517453 TGAAGCCCAACTTGTGTTATGTAC 59.483 41.667 0.00 0.00 39.29 2.90
359 360 4.720046 TGAAGCCCAACTTGTGTTATGTA 58.280 39.130 0.00 0.00 39.29 2.29
360 361 3.561143 TGAAGCCCAACTTGTGTTATGT 58.439 40.909 0.00 0.00 39.29 2.29
361 362 3.612479 GCTGAAGCCCAACTTGTGTTATG 60.612 47.826 0.00 0.00 39.29 1.90
362 363 2.558359 GCTGAAGCCCAACTTGTGTTAT 59.442 45.455 0.00 0.00 39.29 1.89
363 364 1.953686 GCTGAAGCCCAACTTGTGTTA 59.046 47.619 0.00 0.00 39.29 2.41
364 365 0.746659 GCTGAAGCCCAACTTGTGTT 59.253 50.000 0.00 0.00 39.29 3.32
365 366 2.419057 GCTGAAGCCCAACTTGTGT 58.581 52.632 0.00 0.00 39.29 3.72
390 391 9.926158 ACAAATTTAACATCAATGTGCTAATGA 57.074 25.926 0.00 0.00 41.61 2.57
392 393 9.075519 CGACAAATTTAACATCAATGTGCTAAT 57.924 29.630 0.00 0.00 41.61 1.73
393 394 8.293157 TCGACAAATTTAACATCAATGTGCTAA 58.707 29.630 0.00 0.00 41.61 3.09
394 395 7.811653 TCGACAAATTTAACATCAATGTGCTA 58.188 30.769 0.00 0.00 41.61 3.49
395 396 6.676950 TCGACAAATTTAACATCAATGTGCT 58.323 32.000 0.00 0.00 41.61 4.40
396 397 6.926280 TCGACAAATTTAACATCAATGTGC 57.074 33.333 0.00 0.00 41.61 4.57
409 410 9.346725 GCTTGAGATAAGAAAATCGACAAATTT 57.653 29.630 0.00 0.00 31.85 1.82
410 411 8.514594 TGCTTGAGATAAGAAAATCGACAAATT 58.485 29.630 0.00 0.00 31.85 1.82
411 412 8.044060 TGCTTGAGATAAGAAAATCGACAAAT 57.956 30.769 0.00 0.00 31.85 2.32
412 413 7.433708 TGCTTGAGATAAGAAAATCGACAAA 57.566 32.000 0.00 0.00 31.85 2.83
413 414 7.433708 TTGCTTGAGATAAGAAAATCGACAA 57.566 32.000 0.00 0.00 0.00 3.18
414 415 7.119699 ACATTGCTTGAGATAAGAAAATCGACA 59.880 33.333 0.00 0.00 0.00 4.35
415 416 7.467623 ACATTGCTTGAGATAAGAAAATCGAC 58.532 34.615 0.00 0.00 0.00 4.20
416 417 7.615582 ACATTGCTTGAGATAAGAAAATCGA 57.384 32.000 0.00 0.00 0.00 3.59
417 418 8.679288 AAACATTGCTTGAGATAAGAAAATCG 57.321 30.769 0.00 0.00 0.00 3.34
419 420 9.985730 TCAAAACATTGCTTGAGATAAGAAAAT 57.014 25.926 0.00 0.00 0.00 1.82
420 421 9.814899 TTCAAAACATTGCTTGAGATAAGAAAA 57.185 25.926 0.00 0.00 33.30 2.29
421 422 9.985730 ATTCAAAACATTGCTTGAGATAAGAAA 57.014 25.926 0.00 0.00 33.30 2.52
422 423 9.985730 AATTCAAAACATTGCTTGAGATAAGAA 57.014 25.926 0.00 0.00 33.30 2.52
423 424 9.985730 AAATTCAAAACATTGCTTGAGATAAGA 57.014 25.926 0.00 0.00 33.30 2.10
426 427 9.761504 TCAAAATTCAAAACATTGCTTGAGATA 57.238 25.926 2.99 0.00 33.30 1.98
427 428 8.665643 TCAAAATTCAAAACATTGCTTGAGAT 57.334 26.923 2.99 0.00 33.30 2.75
428 429 8.665643 ATCAAAATTCAAAACATTGCTTGAGA 57.334 26.923 2.99 0.00 33.30 3.27
429 430 9.724839 AAATCAAAATTCAAAACATTGCTTGAG 57.275 25.926 2.99 0.00 33.30 3.02
432 433 9.857957 ACAAAATCAAAATTCAAAACATTGCTT 57.142 22.222 0.00 0.00 0.00 3.91
433 434 9.291664 CACAAAATCAAAATTCAAAACATTGCT 57.708 25.926 0.00 0.00 0.00 3.91
434 435 9.286946 TCACAAAATCAAAATTCAAAACATTGC 57.713 25.926 0.00 0.00 0.00 3.56
438 439 9.604626 GTTGTCACAAAATCAAAATTCAAAACA 57.395 25.926 0.00 0.00 0.00 2.83
439 440 9.824534 AGTTGTCACAAAATCAAAATTCAAAAC 57.175 25.926 0.00 0.00 0.00 2.43
443 444 9.645059 TGTAAGTTGTCACAAAATCAAAATTCA 57.355 25.926 0.00 0.00 0.00 2.57
447 448 9.645059 TCAATGTAAGTTGTCACAAAATCAAAA 57.355 25.926 0.00 0.00 0.00 2.44
448 449 9.814899 ATCAATGTAAGTTGTCACAAAATCAAA 57.185 25.926 0.00 0.00 0.00 2.69
454 455 9.676195 CACAATATCAATGTAAGTTGTCACAAA 57.324 29.630 0.00 0.00 0.00 2.83
455 456 8.845227 ACACAATATCAATGTAAGTTGTCACAA 58.155 29.630 0.00 0.00 0.00 3.33
456 457 8.389779 ACACAATATCAATGTAAGTTGTCACA 57.610 30.769 0.00 0.00 0.00 3.58
457 458 8.503196 TGACACAATATCAATGTAAGTTGTCAC 58.497 33.333 0.00 0.00 29.29 3.67
458 459 8.614469 TGACACAATATCAATGTAAGTTGTCA 57.386 30.769 0.00 0.00 30.79 3.58
469 470 9.926158 TTTTTAGTGCATTGACACAATATCAAT 57.074 25.926 11.85 0.00 45.57 2.57
515 516 2.479656 CCCCGTTGCACATTCAAAAATG 59.520 45.455 0.00 0.00 46.42 2.32
516 517 2.103941 ACCCCGTTGCACATTCAAAAAT 59.896 40.909 0.00 0.00 0.00 1.82
517 518 1.482593 ACCCCGTTGCACATTCAAAAA 59.517 42.857 0.00 0.00 0.00 1.94
518 519 1.067821 GACCCCGTTGCACATTCAAAA 59.932 47.619 0.00 0.00 0.00 2.44
519 520 0.671251 GACCCCGTTGCACATTCAAA 59.329 50.000 0.00 0.00 0.00 2.69
520 521 1.175983 GGACCCCGTTGCACATTCAA 61.176 55.000 0.00 0.00 0.00 2.69
521 522 1.602323 GGACCCCGTTGCACATTCA 60.602 57.895 0.00 0.00 0.00 2.57
522 523 2.686816 CGGACCCCGTTGCACATTC 61.687 63.158 0.00 0.00 42.73 2.67
523 524 2.671619 CGGACCCCGTTGCACATT 60.672 61.111 0.00 0.00 42.73 2.71
524 525 4.715523 CCGGACCCCGTTGCACAT 62.716 66.667 0.00 0.00 46.80 3.21
556 557 3.512516 GCTGCACCGGAGCAATCC 61.513 66.667 26.71 14.34 45.13 3.01
557 558 2.747460 TGCTGCACCGGAGCAATC 60.747 61.111 26.71 20.42 43.47 2.67
558 559 2.547640 ATCTGCTGCACCGGAGCAAT 62.548 55.000 26.71 14.81 45.65 3.56
559 560 1.898330 TATCTGCTGCACCGGAGCAA 61.898 55.000 26.71 13.06 45.65 3.91
560 561 2.358372 TATCTGCTGCACCGGAGCA 61.358 57.895 25.34 25.34 44.22 4.26
561 562 1.884926 GTATCTGCTGCACCGGAGC 60.885 63.158 17.78 17.78 36.95 4.70
562 563 1.589993 CGTATCTGCTGCACCGGAG 60.590 63.158 9.46 0.00 0.00 4.63
563 564 1.884075 AACGTATCTGCTGCACCGGA 61.884 55.000 9.46 0.00 0.00 5.14
564 565 1.421410 GAACGTATCTGCTGCACCGG 61.421 60.000 0.00 0.00 0.00 5.28
565 566 1.421410 GGAACGTATCTGCTGCACCG 61.421 60.000 0.00 1.43 0.00 4.94
566 567 1.090052 GGGAACGTATCTGCTGCACC 61.090 60.000 0.00 0.00 0.00 5.01
567 568 0.391130 TGGGAACGTATCTGCTGCAC 60.391 55.000 0.00 0.00 0.00 4.57
568 569 0.108186 CTGGGAACGTATCTGCTGCA 60.108 55.000 0.88 0.88 0.00 4.41
569 570 0.175760 TCTGGGAACGTATCTGCTGC 59.824 55.000 0.00 0.00 0.00 5.25
570 571 1.471676 GGTCTGGGAACGTATCTGCTG 60.472 57.143 0.00 0.00 0.00 4.41
571 572 0.824759 GGTCTGGGAACGTATCTGCT 59.175 55.000 0.00 0.00 0.00 4.24
572 573 0.824759 AGGTCTGGGAACGTATCTGC 59.175 55.000 0.00 0.00 0.00 4.26
573 574 1.409427 GGAGGTCTGGGAACGTATCTG 59.591 57.143 0.00 0.00 0.00 2.90
574 575 1.006758 TGGAGGTCTGGGAACGTATCT 59.993 52.381 0.00 0.00 0.00 1.98
575 576 1.481871 TGGAGGTCTGGGAACGTATC 58.518 55.000 0.00 0.00 0.00 2.24
576 577 2.176247 ATGGAGGTCTGGGAACGTAT 57.824 50.000 0.00 0.00 0.00 3.06
577 578 2.662866 CTATGGAGGTCTGGGAACGTA 58.337 52.381 0.00 0.00 0.00 3.57
578 579 1.486211 CTATGGAGGTCTGGGAACGT 58.514 55.000 0.00 0.00 0.00 3.99
579 580 0.753262 CCTATGGAGGTCTGGGAACG 59.247 60.000 0.00 0.00 38.16 3.95
580 581 0.470341 GCCTATGGAGGTCTGGGAAC 59.530 60.000 0.00 0.00 45.78 3.62
581 582 0.343372 AGCCTATGGAGGTCTGGGAA 59.657 55.000 0.00 0.00 45.78 3.97
582 583 0.399091 CAGCCTATGGAGGTCTGGGA 60.399 60.000 7.24 0.00 45.78 4.37
583 584 0.399091 TCAGCCTATGGAGGTCTGGG 60.399 60.000 12.46 0.00 45.78 4.45
584 585 1.047002 CTCAGCCTATGGAGGTCTGG 58.953 60.000 12.46 0.00 45.78 3.86
585 586 0.392336 GCTCAGCCTATGGAGGTCTG 59.608 60.000 8.33 8.33 45.78 3.51
586 587 0.031716 TGCTCAGCCTATGGAGGTCT 60.032 55.000 0.00 0.00 45.78 3.85
587 588 0.105778 GTGCTCAGCCTATGGAGGTC 59.894 60.000 0.00 0.00 45.78 3.85
588 589 1.341156 GGTGCTCAGCCTATGGAGGT 61.341 60.000 0.00 0.00 45.78 3.85
589 590 1.053264 AGGTGCTCAGCCTATGGAGG 61.053 60.000 0.00 0.00 46.93 4.30
590 591 0.835941 AAGGTGCTCAGCCTATGGAG 59.164 55.000 0.00 0.00 34.81 3.86
591 592 1.289160 AAAGGTGCTCAGCCTATGGA 58.711 50.000 0.00 0.00 34.81 3.41
592 593 2.134789 AAAAGGTGCTCAGCCTATGG 57.865 50.000 0.00 0.00 34.81 2.74
593 594 2.424956 GGAAAAAGGTGCTCAGCCTATG 59.575 50.000 0.00 0.00 34.81 2.23
594 595 2.621668 GGGAAAAAGGTGCTCAGCCTAT 60.622 50.000 0.00 0.00 34.81 2.57
595 596 1.271926 GGGAAAAAGGTGCTCAGCCTA 60.272 52.381 0.00 0.00 34.81 3.93
596 597 0.540597 GGGAAAAAGGTGCTCAGCCT 60.541 55.000 0.00 0.00 38.11 4.58
597 598 1.536073 GGGGAAAAAGGTGCTCAGCC 61.536 60.000 0.00 0.00 0.00 4.85
598 599 1.536073 GGGGGAAAAAGGTGCTCAGC 61.536 60.000 0.00 0.00 0.00 4.26
599 600 2.658548 GGGGGAAAAAGGTGCTCAG 58.341 57.895 0.00 0.00 0.00 3.35
600 601 4.943373 GGGGGAAAAAGGTGCTCA 57.057 55.556 0.00 0.00 0.00 4.26
614 615 2.971901 AACACTCCAAGTAAAGGGGG 57.028 50.000 0.00 0.00 0.00 5.40
615 616 4.278419 CAGAAAACACTCCAAGTAAAGGGG 59.722 45.833 0.00 0.00 0.00 4.79
616 617 4.887655 ACAGAAAACACTCCAAGTAAAGGG 59.112 41.667 0.00 0.00 0.00 3.95
617 618 7.562454 TTACAGAAAACACTCCAAGTAAAGG 57.438 36.000 0.00 0.00 0.00 3.11
624 625 9.308318 GCTAAAATTTTACAGAAAACACTCCAA 57.692 29.630 6.54 0.00 37.37 3.53
625 626 8.470805 TGCTAAAATTTTACAGAAAACACTCCA 58.529 29.630 6.54 0.00 37.37 3.86
626 627 8.752254 GTGCTAAAATTTTACAGAAAACACTCC 58.248 33.333 6.54 0.00 37.37 3.85
627 628 9.296400 TGTGCTAAAATTTTACAGAAAACACTC 57.704 29.630 6.54 0.00 37.37 3.51
628 629 9.301153 CTGTGCTAAAATTTTACAGAAAACACT 57.699 29.630 20.49 0.00 40.80 3.55
629 630 9.083080 ACTGTGCTAAAATTTTACAGAAAACAC 57.917 29.630 27.37 15.52 40.80 3.32
630 631 9.646427 AACTGTGCTAAAATTTTACAGAAAACA 57.354 25.926 27.37 15.82 40.80 2.83
631 632 9.900264 CAACTGTGCTAAAATTTTACAGAAAAC 57.100 29.630 27.37 13.20 40.80 2.43
632 633 9.646427 ACAACTGTGCTAAAATTTTACAGAAAA 57.354 25.926 27.37 5.62 40.80 2.29
643 644 9.113838 CCTGAGATAATACAACTGTGCTAAAAT 57.886 33.333 0.00 0.00 0.00 1.82
644 645 7.065803 GCCTGAGATAATACAACTGTGCTAAAA 59.934 37.037 0.00 0.00 0.00 1.52
645 646 6.538742 GCCTGAGATAATACAACTGTGCTAAA 59.461 38.462 0.00 0.00 0.00 1.85
646 647 6.049149 GCCTGAGATAATACAACTGTGCTAA 58.951 40.000 0.00 0.00 0.00 3.09
647 648 5.363868 AGCCTGAGATAATACAACTGTGCTA 59.636 40.000 0.00 0.00 0.00 3.49
648 649 4.163078 AGCCTGAGATAATACAACTGTGCT 59.837 41.667 0.00 0.00 0.00 4.40
649 650 4.446371 AGCCTGAGATAATACAACTGTGC 58.554 43.478 0.00 0.00 0.00 4.57
650 651 5.911752 AGAGCCTGAGATAATACAACTGTG 58.088 41.667 0.00 0.00 0.00 3.66
651 652 5.896678 AGAGAGCCTGAGATAATACAACTGT 59.103 40.000 0.00 0.00 0.00 3.55
652 653 6.403866 AGAGAGCCTGAGATAATACAACTG 57.596 41.667 0.00 0.00 0.00 3.16
653 654 8.719645 ATAAGAGAGCCTGAGATAATACAACT 57.280 34.615 0.00 0.00 0.00 3.16
654 655 9.202273 CAATAAGAGAGCCTGAGATAATACAAC 57.798 37.037 0.00 0.00 0.00 3.32
655 656 8.928448 ACAATAAGAGAGCCTGAGATAATACAA 58.072 33.333 0.00 0.00 0.00 2.41
656 657 8.484214 ACAATAAGAGAGCCTGAGATAATACA 57.516 34.615 0.00 0.00 0.00 2.29
659 660 9.319060 TGATACAATAAGAGAGCCTGAGATAAT 57.681 33.333 0.00 0.00 0.00 1.28
660 661 8.712228 TGATACAATAAGAGAGCCTGAGATAA 57.288 34.615 0.00 0.00 0.00 1.75
661 662 8.580720 GTTGATACAATAAGAGAGCCTGAGATA 58.419 37.037 0.00 0.00 0.00 1.98
662 663 7.441017 GTTGATACAATAAGAGAGCCTGAGAT 58.559 38.462 0.00 0.00 0.00 2.75
663 664 6.460261 CGTTGATACAATAAGAGAGCCTGAGA 60.460 42.308 0.00 0.00 0.00 3.27
664 665 5.689514 CGTTGATACAATAAGAGAGCCTGAG 59.310 44.000 0.00 0.00 0.00 3.35
665 666 5.127194 ACGTTGATACAATAAGAGAGCCTGA 59.873 40.000 0.00 0.00 0.00 3.86
666 667 5.233050 CACGTTGATACAATAAGAGAGCCTG 59.767 44.000 0.00 0.00 0.00 4.85
667 668 5.352284 CACGTTGATACAATAAGAGAGCCT 58.648 41.667 0.00 0.00 0.00 4.58
668 669 4.508124 CCACGTTGATACAATAAGAGAGCC 59.492 45.833 0.00 0.00 0.00 4.70
669 670 5.232414 GTCCACGTTGATACAATAAGAGAGC 59.768 44.000 0.00 0.00 0.00 4.09
670 671 6.253727 GTGTCCACGTTGATACAATAAGAGAG 59.746 42.308 11.00 0.00 0.00 3.20
671 672 6.097356 GTGTCCACGTTGATACAATAAGAGA 58.903 40.000 11.00 0.00 0.00 3.10
672 673 6.332504 GTGTCCACGTTGATACAATAAGAG 57.667 41.667 11.00 0.00 0.00 2.85
718 719 2.908351 ACCGAGTTGTTATTAGTGGGGT 59.092 45.455 0.00 0.00 0.00 4.95
722 723 6.367695 TGATTCACACCGAGTTGTTATTAGTG 59.632 38.462 0.00 0.00 0.00 2.74
723 724 6.460781 TGATTCACACCGAGTTGTTATTAGT 58.539 36.000 0.00 0.00 0.00 2.24
724 725 6.961359 TGATTCACACCGAGTTGTTATTAG 57.039 37.500 0.00 0.00 0.00 1.73
725 726 7.915293 ATTGATTCACACCGAGTTGTTATTA 57.085 32.000 0.00 0.00 0.00 0.98
726 727 6.817765 ATTGATTCACACCGAGTTGTTATT 57.182 33.333 0.00 0.00 0.00 1.40
727 728 6.817765 AATTGATTCACACCGAGTTGTTAT 57.182 33.333 0.00 0.00 0.00 1.89
738 739 4.088648 CGGCGACTAAAATTGATTCACAC 58.911 43.478 0.00 0.00 0.00 3.82
815 819 1.531602 GGCAACAGGAAACCAGCCT 60.532 57.895 0.00 0.00 39.02 4.58
901 907 2.603953 GGACGGCGAAAGTATATAGGC 58.396 52.381 16.62 0.00 0.00 3.93
902 908 2.824341 AGGGACGGCGAAAGTATATAGG 59.176 50.000 16.62 0.00 0.00 2.57
919 925 2.237143 AGATGTGAAATGAAGCGAGGGA 59.763 45.455 0.00 0.00 0.00 4.20
923 929 2.425539 TGCAGATGTGAAATGAAGCGA 58.574 42.857 0.00 0.00 0.00 4.93
927 934 4.081531 GGGGAATTGCAGATGTGAAATGAA 60.082 41.667 0.00 0.00 31.55 2.57
966 1004 3.952628 GAGGGAGCGGGGTGTTTCG 62.953 68.421 0.00 0.00 0.00 3.46
967 1005 2.046217 GAGGGAGCGGGGTGTTTC 60.046 66.667 0.00 0.00 0.00 2.78
968 1006 2.529389 AGAGGGAGCGGGGTGTTT 60.529 61.111 0.00 0.00 0.00 2.83
969 1007 3.003763 GAGAGGGAGCGGGGTGTT 61.004 66.667 0.00 0.00 0.00 3.32
970 1008 3.966930 GAGAGAGGGAGCGGGGTGT 62.967 68.421 0.00 0.00 0.00 4.16
971 1009 3.151022 GAGAGAGGGAGCGGGGTG 61.151 72.222 0.00 0.00 0.00 4.61
972 1010 3.239627 TTGAGAGAGGGAGCGGGGT 62.240 63.158 0.00 0.00 0.00 4.95
1449 1538 2.025155 ACGGACGCATCTTCAGTCTAT 58.975 47.619 0.00 0.00 35.42 1.98
1497 1631 1.169577 AGCAGAGTCGACAGTACAGG 58.830 55.000 19.50 0.83 0.00 4.00
1500 1634 2.226912 AGACAAGCAGAGTCGACAGTAC 59.773 50.000 19.50 4.40 40.84 2.73
1501 1635 2.484651 GAGACAAGCAGAGTCGACAGTA 59.515 50.000 19.50 0.00 40.84 2.74
1502 1636 1.268352 GAGACAAGCAGAGTCGACAGT 59.732 52.381 19.50 0.30 40.84 3.55
1577 2525 8.962679 ACAACTTCAGTTCTTACAACCAATTAA 58.037 29.630 0.00 0.00 35.83 1.40
1578 2526 8.514330 ACAACTTCAGTTCTTACAACCAATTA 57.486 30.769 0.00 0.00 35.83 1.40
1579 2527 7.404671 ACAACTTCAGTTCTTACAACCAATT 57.595 32.000 0.00 0.00 35.83 2.32
1580 2528 7.093945 ACAACAACTTCAGTTCTTACAACCAAT 60.094 33.333 0.00 0.00 35.83 3.16
1606 2554 8.427902 AGATAGATATATCAGTCTGCCAAACA 57.572 34.615 15.08 0.00 0.00 2.83
1624 2572 7.364232 CCACCACAAGTTCAGTTCTAGATAGAT 60.364 40.741 0.00 0.00 31.40 1.98
1625 2573 6.071334 CCACCACAAGTTCAGTTCTAGATAGA 60.071 42.308 0.00 0.00 0.00 1.98
1726 2692 8.074370 GCACTACTCACAGATAATAACACGATA 58.926 37.037 0.00 0.00 0.00 2.92
1736 2702 6.603599 AGTGATGTAGCACTACTCACAGATAA 59.396 38.462 25.28 3.52 46.67 1.75
1751 2717 7.499232 ACTCCCATAAATTAACAGTGATGTAGC 59.501 37.037 0.00 0.00 0.00 3.58
1754 2720 7.362920 GCAACTCCCATAAATTAACAGTGATGT 60.363 37.037 0.00 0.00 0.00 3.06
1781 4121 0.110238 CAAGTGTCAACGGGCATTCG 60.110 55.000 0.00 0.00 0.00 3.34
1785 4125 1.077357 AACCAAGTGTCAACGGGCA 60.077 52.632 0.00 0.00 0.00 5.36
1796 4136 0.472471 TTCTTCCGAGCCAACCAAGT 59.528 50.000 0.00 0.00 0.00 3.16
1843 4200 0.667993 ACCAACACAGAAATGCACCG 59.332 50.000 0.00 0.00 0.00 4.94
1846 4203 4.370049 CAAATCACCAACACAGAAATGCA 58.630 39.130 0.00 0.00 0.00 3.96
1859 4216 7.446013 CCTAGTACTGTAAAAACCAAATCACCA 59.554 37.037 5.39 0.00 0.00 4.17
1879 4236 7.341256 CCATTCAGTTCCAAGTACTACCTAGTA 59.659 40.741 0.00 0.00 37.73 1.82
1880 4237 6.154706 CCATTCAGTTCCAAGTACTACCTAGT 59.845 42.308 0.00 0.00 40.24 2.57
1881 4238 6.574350 CCATTCAGTTCCAAGTACTACCTAG 58.426 44.000 0.00 0.00 0.00 3.02
1885 4242 4.575885 TGCCATTCAGTTCCAAGTACTAC 58.424 43.478 0.00 0.00 0.00 2.73
1886 4243 4.901197 TGCCATTCAGTTCCAAGTACTA 57.099 40.909 0.00 0.00 0.00 1.82
1888 4245 4.846779 TTTGCCATTCAGTTCCAAGTAC 57.153 40.909 0.00 0.00 0.00 2.73
1890 4247 3.555586 GCATTTGCCATTCAGTTCCAAGT 60.556 43.478 0.00 0.00 34.31 3.16
1891 4248 2.997986 GCATTTGCCATTCAGTTCCAAG 59.002 45.455 0.00 0.00 34.31 3.61
1892 4249 2.367894 TGCATTTGCCATTCAGTTCCAA 59.632 40.909 0.00 0.00 41.18 3.53
1893 4250 1.969208 TGCATTTGCCATTCAGTTCCA 59.031 42.857 0.00 0.00 41.18 3.53
1894 4251 2.747396 TGCATTTGCCATTCAGTTCC 57.253 45.000 0.00 0.00 41.18 3.62
1900 4257 4.816786 AAACAACTTGCATTTGCCATTC 57.183 36.364 8.18 0.00 41.18 2.67
1903 4260 3.427233 GCAAAAACAACTTGCATTTGCCA 60.427 39.130 22.48 0.00 46.78 4.92
1925 4282 5.924475 AGTAACTCACATTTCACTTTCCG 57.076 39.130 0.00 0.00 0.00 4.30
1931 4288 6.220930 TGGACAGTAGTAACTCACATTTCAC 58.779 40.000 0.00 0.00 31.97 3.18
1945 4302 2.154462 GCAGCACAATTGGACAGTAGT 58.846 47.619 10.83 0.00 0.00 2.73
1948 4305 2.154462 GTAGCAGCACAATTGGACAGT 58.846 47.619 10.83 0.00 0.00 3.55
1961 4318 4.442733 CGCTCTATCTTGTTTAGTAGCAGC 59.557 45.833 0.00 0.00 0.00 5.25
1962 4319 5.822278 TCGCTCTATCTTGTTTAGTAGCAG 58.178 41.667 0.00 0.00 0.00 4.24
1963 4320 5.830000 TCGCTCTATCTTGTTTAGTAGCA 57.170 39.130 0.00 0.00 0.00 3.49
1964 4321 7.142680 AGAATCGCTCTATCTTGTTTAGTAGC 58.857 38.462 0.00 0.00 30.22 3.58
1965 4322 9.176181 GAAGAATCGCTCTATCTTGTTTAGTAG 57.824 37.037 0.00 0.00 33.73 2.57
1994 4359 0.893270 AGCGGCAAGGCAATAACACA 60.893 50.000 1.45 0.00 34.64 3.72
2002 4367 3.286751 GTTGACAGCGGCAAGGCA 61.287 61.111 1.45 0.00 34.64 4.75
2005 4370 0.236711 CTTCAGTTGACAGCGGCAAG 59.763 55.000 1.45 0.00 0.00 4.01
2010 4375 3.951979 AGTTTTCTTCAGTTGACAGCG 57.048 42.857 0.00 0.00 0.00 5.18
2037 4402 1.273048 AGTCTGAGTCTGAAGCAGCAG 59.727 52.381 0.70 0.00 37.24 4.24
2038 4403 1.000618 CAGTCTGAGTCTGAAGCAGCA 59.999 52.381 0.20 0.00 35.20 4.41
2039 4404 1.712401 CAGTCTGAGTCTGAAGCAGC 58.288 55.000 0.20 0.00 35.20 5.25
2040 4405 1.712401 GCAGTCTGAGTCTGAAGCAG 58.288 55.000 10.83 2.57 35.20 4.24
2041 4406 0.038801 CGCAGTCTGAGTCTGAAGCA 60.039 55.000 10.83 0.00 35.20 3.91
2042 4407 0.735632 CCGCAGTCTGAGTCTGAAGC 60.736 60.000 10.83 12.78 35.20 3.86
2043 4408 0.600557 ACCGCAGTCTGAGTCTGAAG 59.399 55.000 10.83 3.32 35.20 3.02
2044 4409 1.813178 CTACCGCAGTCTGAGTCTGAA 59.187 52.381 10.83 0.00 35.20 3.02
2046 4411 0.179150 GCTACCGCAGTCTGAGTCTG 60.179 60.000 3.32 2.26 35.78 3.51
2047 4412 0.609406 TGCTACCGCAGTCTGAGTCT 60.609 55.000 3.32 0.00 42.25 3.24
2048 4413 1.883732 TGCTACCGCAGTCTGAGTC 59.116 57.895 3.32 0.00 42.25 3.36
2049 4414 4.097218 TGCTACCGCAGTCTGAGT 57.903 55.556 3.32 2.55 42.25 3.41
2059 4424 0.524392 CGACTCTGAAGCTGCTACCG 60.524 60.000 0.90 0.00 0.00 4.02
2065 4430 1.403679 CCTAGGACGACTCTGAAGCTG 59.596 57.143 1.05 0.00 0.00 4.24
2075 4440 1.153549 CAGCCAAGCCTAGGACGAC 60.154 63.158 14.75 0.00 0.00 4.34
2116 4516 8.492673 TGTAATTATACAGAGCCTGAAAGTTG 57.507 34.615 8.91 0.00 37.11 3.16
2117 4517 9.113838 CATGTAATTATACAGAGCCTGAAAGTT 57.886 33.333 8.91 1.34 44.85 2.66
2118 4518 7.227512 GCATGTAATTATACAGAGCCTGAAAGT 59.772 37.037 8.91 3.33 44.85 2.66
2119 4519 7.227314 TGCATGTAATTATACAGAGCCTGAAAG 59.773 37.037 8.91 0.00 44.85 2.62
2120 4520 7.053498 TGCATGTAATTATACAGAGCCTGAAA 58.947 34.615 8.91 2.00 44.85 2.69
2121 4521 6.591001 TGCATGTAATTATACAGAGCCTGAA 58.409 36.000 8.91 0.00 44.85 3.02
2122 4522 6.173427 TGCATGTAATTATACAGAGCCTGA 57.827 37.500 8.91 0.00 44.85 3.86
2129 4529 5.396484 GCCAGCATGCATGTAATTATACAG 58.604 41.667 26.79 5.46 39.23 2.74
2130 4530 4.083377 CGCCAGCATGCATGTAATTATACA 60.083 41.667 26.79 0.00 39.84 2.29
2145 4545 1.071299 TCAGAACACACGCCAGCAT 59.929 52.632 0.00 0.00 0.00 3.79
2146 4546 1.887242 GTCAGAACACACGCCAGCA 60.887 57.895 0.00 0.00 0.00 4.41
2147 4547 2.607892 GGTCAGAACACACGCCAGC 61.608 63.158 0.00 0.00 0.00 4.85
2149 4549 0.884259 CATGGTCAGAACACACGCCA 60.884 55.000 0.00 0.00 0.00 5.69
2150 4550 0.884704 ACATGGTCAGAACACACGCC 60.885 55.000 0.00 0.00 0.00 5.68
2151 4551 0.944386 AACATGGTCAGAACACACGC 59.056 50.000 0.00 0.00 0.00 5.34
2152 4552 1.939934 ACAACATGGTCAGAACACACG 59.060 47.619 0.00 0.00 0.00 4.49
2153 4553 2.290641 GGACAACATGGTCAGAACACAC 59.709 50.000 0.00 0.00 39.59 3.82
2171 4571 2.488153 GGCACAATTCTTACAGTGGGAC 59.512 50.000 0.00 0.00 32.80 4.46
2186 4586 0.031857 CAAGCACAATTCCGGCACAA 59.968 50.000 0.00 0.00 0.00 3.33
2192 4592 1.067706 TCCAATGCAAGCACAATTCCG 60.068 47.619 0.00 0.00 0.00 4.30
2200 4600 2.502142 ACTCTCATCCAATGCAAGCA 57.498 45.000 0.00 0.00 0.00 3.91
2201 4601 3.944015 AGTAACTCTCATCCAATGCAAGC 59.056 43.478 0.00 0.00 0.00 4.01
2202 4602 4.940046 ACAGTAACTCTCATCCAATGCAAG 59.060 41.667 0.00 0.00 0.00 4.01
2203 4603 4.910195 ACAGTAACTCTCATCCAATGCAA 58.090 39.130 0.00 0.00 0.00 4.08
2204 4604 4.020307 TGACAGTAACTCTCATCCAATGCA 60.020 41.667 0.00 0.00 0.00 3.96
2205 4605 4.507710 TGACAGTAACTCTCATCCAATGC 58.492 43.478 0.00 0.00 0.00 3.56
2206 4606 5.970592 TCTGACAGTAACTCTCATCCAATG 58.029 41.667 1.59 0.00 0.00 2.82
2207 4607 5.954752 TCTCTGACAGTAACTCTCATCCAAT 59.045 40.000 1.59 0.00 0.00 3.16
2208 4608 5.325239 TCTCTGACAGTAACTCTCATCCAA 58.675 41.667 1.59 0.00 0.00 3.53
2209 4609 4.923415 TCTCTGACAGTAACTCTCATCCA 58.077 43.478 1.59 0.00 0.00 3.41
2210 4610 4.947388 ACTCTCTGACAGTAACTCTCATCC 59.053 45.833 1.59 0.00 0.00 3.51
2211 4611 6.072175 ACAACTCTCTGACAGTAACTCTCATC 60.072 42.308 1.59 0.00 0.00 2.92
2212 4612 5.772672 ACAACTCTCTGACAGTAACTCTCAT 59.227 40.000 1.59 0.00 0.00 2.90
2213 4613 5.133941 ACAACTCTCTGACAGTAACTCTCA 58.866 41.667 1.59 0.00 0.00 3.27
2217 4617 4.202264 CCCAACAACTCTCTGACAGTAACT 60.202 45.833 1.59 0.00 0.00 2.24
2221 4621 2.119495 ACCCAACAACTCTCTGACAGT 58.881 47.619 1.59 0.00 0.00 3.55
2235 4635 6.056236 GGTATCTAAGGAATCTGAACCCAAC 58.944 44.000 2.30 0.00 0.00 3.77
2240 4640 9.620259 AGATTTTGGTATCTAAGGAATCTGAAC 57.380 33.333 0.00 0.00 33.17 3.18
2269 4676 4.290155 AGAACAAACTAATTGCAACTGCG 58.710 39.130 0.00 0.00 45.83 5.18
2285 4692 6.550854 AGAACCAGATTTGAATCCAAGAACAA 59.449 34.615 0.27 0.00 36.04 2.83
2306 4713 3.267483 TGCGGCAGGTTTAGATTAGAAC 58.733 45.455 0.00 0.00 0.00 3.01
2323 4730 2.099062 GCTTGATTCGTGCTGCGG 59.901 61.111 0.00 0.00 41.72 5.69
2324 4731 0.385849 TTTGCTTGATTCGTGCTGCG 60.386 50.000 0.00 0.00 43.01 5.18
2348 4755 3.207669 GAGGGAATGGCTGCAGCG 61.208 66.667 31.19 0.00 43.26 5.18
2355 4762 2.325583 TTGATGTACGAGGGAATGGC 57.674 50.000 0.00 0.00 0.00 4.40
2382 4789 1.207089 TCCCAATGACGATGACTGGTC 59.793 52.381 0.00 0.00 0.00 4.02
2384 4791 2.093500 TCTTCCCAATGACGATGACTGG 60.093 50.000 0.00 0.00 0.00 4.00
2385 4792 3.251479 TCTTCCCAATGACGATGACTG 57.749 47.619 0.00 0.00 0.00 3.51
2386 4793 3.369892 CCTTCTTCCCAATGACGATGACT 60.370 47.826 0.00 0.00 0.00 3.41
2387 4794 2.939103 CCTTCTTCCCAATGACGATGAC 59.061 50.000 0.00 0.00 0.00 3.06
2388 4795 2.092968 CCCTTCTTCCCAATGACGATGA 60.093 50.000 0.00 0.00 0.00 2.92
2389 4796 2.292267 CCCTTCTTCCCAATGACGATG 58.708 52.381 0.00 0.00 0.00 3.84
2390 4797 1.408822 GCCCTTCTTCCCAATGACGAT 60.409 52.381 0.00 0.00 0.00 3.73
2391 4798 0.035439 GCCCTTCTTCCCAATGACGA 60.035 55.000 0.00 0.00 0.00 4.20
2392 4799 1.369091 CGCCCTTCTTCCCAATGACG 61.369 60.000 0.00 0.00 0.00 4.35
2393 4800 0.035439 TCGCCCTTCTTCCCAATGAC 60.035 55.000 0.00 0.00 0.00 3.06
2394 4801 0.035439 GTCGCCCTTCTTCCCAATGA 60.035 55.000 0.00 0.00 0.00 2.57
2395 4802 1.032114 GGTCGCCCTTCTTCCCAATG 61.032 60.000 0.00 0.00 0.00 2.82
2397 4804 1.846124 AGGTCGCCCTTCTTCCCAA 60.846 57.895 0.00 0.00 38.13 4.12
2398 4805 2.203938 AGGTCGCCCTTCTTCCCA 60.204 61.111 0.00 0.00 38.13 4.37
2407 4814 0.678048 ATGCTTTCAGAAGGTCGCCC 60.678 55.000 0.00 0.00 33.34 6.13
2408 4815 0.729690 GATGCTTTCAGAAGGTCGCC 59.270 55.000 0.00 0.00 33.34 5.54
2410 4817 1.373570 GGGATGCTTTCAGAAGGTCG 58.626 55.000 0.00 0.00 33.34 4.79
2411 4818 1.373570 CGGGATGCTTTCAGAAGGTC 58.626 55.000 0.00 0.00 33.34 3.85
2412 4819 0.678048 GCGGGATGCTTTCAGAAGGT 60.678 55.000 0.00 0.00 41.73 3.50
2413 4820 1.709147 CGCGGGATGCTTTCAGAAGG 61.709 60.000 0.00 0.00 43.27 3.46
2432 5244 3.553095 AAAGGCTGTCCGAGGTGGC 62.553 63.158 0.00 0.00 37.80 5.01
2433 5245 0.323629 TAAAAGGCTGTCCGAGGTGG 59.676 55.000 0.00 0.00 37.47 4.61
2434 5246 3.927555 TAAAAGGCTGTCCGAGGTG 57.072 52.632 0.00 0.00 37.47 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.