Multiple sequence alignment - TraesCS1D01G393900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G393900 chr1D 100.000 3185 0 0 1 3185 463284245 463281061 0.000000e+00 5882.0
1 TraesCS1D01G393900 chr1D 86.198 1536 140 42 802 2283 463341066 463342583 0.000000e+00 1596.0
2 TraesCS1D01G393900 chr1D 87.796 1311 137 9 1098 2399 463326415 463325119 0.000000e+00 1513.0
3 TraesCS1D01G393900 chr1D 95.113 266 9 3 6 269 478509837 478509574 1.770000e-112 416.0
4 TraesCS1D01G393900 chr1D 91.133 203 14 3 2447 2645 463342747 463342949 4.050000e-69 272.0
5 TraesCS1D01G393900 chr1D 100.000 32 0 0 2643 2674 463342969 463343000 3.430000e-05 60.2
6 TraesCS1D01G393900 chr1A 94.330 2187 82 16 1028 3185 555485075 555482902 0.000000e+00 3314.0
7 TraesCS1D01G393900 chr1A 87.615 1308 133 14 1098 2399 555523120 555521836 0.000000e+00 1491.0
8 TraesCS1D01G393900 chr1A 85.422 1468 135 44 802 2216 555533220 555534661 0.000000e+00 1452.0
9 TraesCS1D01G393900 chr1A 92.952 454 12 7 594 1044 555485525 555485089 0.000000e+00 643.0
10 TraesCS1D01G393900 chr1A 93.000 200 13 1 2447 2645 555534867 555535066 1.120000e-74 291.0
11 TraesCS1D01G393900 chr1A 92.683 82 4 2 263 344 555485699 555485620 2.010000e-22 117.0
12 TraesCS1D01G393900 chr1A 100.000 30 0 0 2645 2674 555535088 555535117 4.440000e-04 56.5
13 TraesCS1D01G393900 chr1B 92.709 2030 81 29 747 2741 638784166 638782169 0.000000e+00 2867.0
14 TraesCS1D01G393900 chr1B 85.314 1927 167 59 802 2642 638881752 638883648 0.000000e+00 1884.0
15 TraesCS1D01G393900 chr1B 88.727 1304 119 13 1106 2399 638821892 638820607 0.000000e+00 1568.0
16 TraesCS1D01G393900 chr1B 95.624 457 13 2 2732 3185 638782020 638781568 0.000000e+00 726.0
17 TraesCS1D01G393900 chr1B 95.122 82 2 2 263 344 638784976 638784897 9.270000e-26 128.0
18 TraesCS1D01G393900 chr1B 100.000 35 0 0 696 730 638784200 638784166 7.370000e-07 65.8
19 TraesCS1D01G393900 chr1B 100.000 32 0 0 2643 2674 638883671 638883702 3.430000e-05 60.2
20 TraesCS1D01G393900 chr3D 86.022 465 59 2 1357 1816 5809088 5808625 7.940000e-136 494.0
21 TraesCS1D01G393900 chr3D 95.113 266 10 2 1 265 89891453 89891190 1.770000e-112 416.0
22 TraesCS1D01G393900 chr3D 91.176 68 6 0 1221 1288 5809156 5809089 3.380000e-15 93.5
23 TraesCS1D01G393900 chr5D 95.985 274 7 3 1 273 105612824 105613094 2.920000e-120 442.0
24 TraesCS1D01G393900 chr5D 96.604 265 7 2 1 264 84195508 84195771 3.770000e-119 438.0
25 TraesCS1D01G393900 chr5D 86.010 193 11 7 393 575 521487994 521487808 3.240000e-45 193.0
26 TraesCS1D01G393900 chr4D 96.226 265 8 2 1 264 97761408 97761145 1.750000e-117 433.0
27 TraesCS1D01G393900 chr4D 95.385 260 9 2 6 264 484454479 484454736 8.220000e-111 411.0
28 TraesCS1D01G393900 chr4D 94.717 265 11 2 1 264 43447277 43447015 2.960000e-110 409.0
29 TraesCS1D01G393900 chr4D 88.172 186 7 7 402 577 418740450 418740270 1.160000e-49 207.0
30 TraesCS1D01G393900 chr4D 86.911 191 10 8 401 581 29656651 29656466 1.940000e-47 200.0
31 TraesCS1D01G393900 chr4D 86.911 191 9 9 394 575 35722298 35722481 1.940000e-47 200.0
32 TraesCS1D01G393900 chr2D 96.538 260 6 2 6 264 589138817 589138560 8.160000e-116 427.0
33 TraesCS1D01G393900 chr2D 95.489 266 9 2 1 265 413271552 413271815 3.800000e-114 422.0
34 TraesCS1D01G393900 chr2D 86.458 192 9 9 394 575 537187725 537187909 9.010000e-46 195.0
35 TraesCS1D01G393900 chr2D 86.096 187 11 7 398 575 58984857 58985037 1.510000e-43 187.0
36 TraesCS1D01G393900 chr5A 89.011 182 7 4 401 575 74676253 74676078 2.490000e-51 213.0
37 TraesCS1D01G393900 chr6D 88.462 182 8 7 401 575 395525583 395525758 1.160000e-49 207.0
38 TraesCS1D01G393900 chr3A 86.869 198 11 8 391 579 714292387 714292578 1.160000e-49 207.0
39 TraesCS1D01G393900 chr7D 87.701 187 9 6 398 575 629623528 629623709 4.160000e-49 206.0
40 TraesCS1D01G393900 chr5B 87.568 185 9 6 398 575 616689944 616690121 5.390000e-48 202.0
41 TraesCS1D01G393900 chr7B 87.166 187 10 8 398 575 160645077 160645258 1.940000e-47 200.0
42 TraesCS1D01G393900 chr3B 85.149 202 15 7 392 585 700361959 700362153 3.240000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G393900 chr1D 463281061 463284245 3184 True 5882.000000 5882 100.000000 1 3185 1 chr1D.!!$R1 3184
1 TraesCS1D01G393900 chr1D 463325119 463326415 1296 True 1513.000000 1513 87.796000 1098 2399 1 chr1D.!!$R2 1301
2 TraesCS1D01G393900 chr1D 463341066 463343000 1934 False 642.733333 1596 92.443667 802 2674 3 chr1D.!!$F1 1872
3 TraesCS1D01G393900 chr1A 555521836 555523120 1284 True 1491.000000 1491 87.615000 1098 2399 1 chr1A.!!$R1 1301
4 TraesCS1D01G393900 chr1A 555482902 555485699 2797 True 1358.000000 3314 93.321667 263 3185 3 chr1A.!!$R2 2922
5 TraesCS1D01G393900 chr1A 555533220 555535117 1897 False 599.833333 1452 92.807333 802 2674 3 chr1A.!!$F1 1872
6 TraesCS1D01G393900 chr1B 638820607 638821892 1285 True 1568.000000 1568 88.727000 1106 2399 1 chr1B.!!$R1 1293
7 TraesCS1D01G393900 chr1B 638881752 638883702 1950 False 972.100000 1884 92.657000 802 2674 2 chr1B.!!$F1 1872
8 TraesCS1D01G393900 chr1B 638781568 638784976 3408 True 946.700000 2867 95.863750 263 3185 4 chr1B.!!$R2 2922
9 TraesCS1D01G393900 chr3D 5808625 5809156 531 True 293.750000 494 88.599000 1221 1816 2 chr3D.!!$R2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.034089 GTGGGGCTGTAGCTGGATTT 60.034 55.0 0.00 0.0 41.70 2.17 F
186 187 0.178935 TTTCCTTTTCTGGGGCCAGG 60.179 55.0 4.39 1.7 43.75 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2776 0.668706 GCTCTTGTGCAAGCTCTCGA 60.669 55.0 7.03 0.0 38.28 4.04 R
2458 3187 2.593346 TTTTCACACACCCATGCAAC 57.407 45.0 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.682155 GTGGAGAAGAAGCTAGGTGG 57.318 55.000 0.00 0.00 0.00 4.61
20 21 1.208293 GTGGAGAAGAAGCTAGGTGGG 59.792 57.143 0.00 0.00 0.00 4.61
21 22 0.833949 GGAGAAGAAGCTAGGTGGGG 59.166 60.000 0.00 0.00 0.00 4.96
22 23 0.179234 GAGAAGAAGCTAGGTGGGGC 59.821 60.000 0.00 0.00 0.00 5.80
23 24 0.547712 AGAAGAAGCTAGGTGGGGCA 60.548 55.000 0.00 0.00 0.00 5.36
24 25 0.107459 GAAGAAGCTAGGTGGGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
25 26 1.566298 AAGAAGCTAGGTGGGGCAGG 61.566 60.000 0.00 0.00 0.00 4.85
26 27 2.204151 AAGCTAGGTGGGGCAGGT 60.204 61.111 0.00 0.00 0.00 4.00
27 28 0.981277 GAAGCTAGGTGGGGCAGGTA 60.981 60.000 0.00 0.00 0.00 3.08
28 29 0.983378 AAGCTAGGTGGGGCAGGTAG 60.983 60.000 0.00 0.00 0.00 3.18
29 30 2.444256 GCTAGGTGGGGCAGGTAGG 61.444 68.421 0.00 0.00 0.00 3.18
30 31 1.766461 CTAGGTGGGGCAGGTAGGG 60.766 68.421 0.00 0.00 0.00 3.53
31 32 3.341469 TAGGTGGGGCAGGTAGGGG 62.341 68.421 0.00 0.00 0.00 4.79
34 35 4.777546 TGGGGCAGGTAGGGGCAT 62.778 66.667 0.00 0.00 0.00 4.40
35 36 2.449714 GGGGCAGGTAGGGGCATA 60.450 66.667 0.00 0.00 0.00 3.14
36 37 1.852626 GGGGCAGGTAGGGGCATAT 60.853 63.158 0.00 0.00 0.00 1.78
37 38 1.380302 GGGCAGGTAGGGGCATATG 59.620 63.158 0.00 0.00 0.00 1.78
38 39 1.380302 GGCAGGTAGGGGCATATGG 59.620 63.158 4.56 0.00 0.00 2.74
39 40 1.380302 GCAGGTAGGGGCATATGGG 59.620 63.158 4.56 0.00 0.00 4.00
40 41 2.078452 CAGGTAGGGGCATATGGGG 58.922 63.158 4.56 0.00 0.00 4.96
41 42 0.475632 CAGGTAGGGGCATATGGGGA 60.476 60.000 4.56 0.00 0.00 4.81
42 43 0.178861 AGGTAGGGGCATATGGGGAG 60.179 60.000 4.56 0.00 0.00 4.30
43 44 0.178873 GGTAGGGGCATATGGGGAGA 60.179 60.000 4.56 0.00 0.00 3.71
44 45 1.742308 GTAGGGGCATATGGGGAGAA 58.258 55.000 4.56 0.00 0.00 2.87
45 46 1.630878 GTAGGGGCATATGGGGAGAAG 59.369 57.143 4.56 0.00 0.00 2.85
46 47 0.773700 AGGGGCATATGGGGAGAAGG 60.774 60.000 4.56 0.00 0.00 3.46
47 48 1.068352 GGGGCATATGGGGAGAAGGT 61.068 60.000 4.56 0.00 0.00 3.50
48 49 0.853530 GGGCATATGGGGAGAAGGTT 59.146 55.000 4.56 0.00 0.00 3.50
49 50 1.479389 GGGCATATGGGGAGAAGGTTG 60.479 57.143 4.56 0.00 0.00 3.77
50 51 1.479389 GGCATATGGGGAGAAGGTTGG 60.479 57.143 4.56 0.00 0.00 3.77
51 52 1.215423 GCATATGGGGAGAAGGTTGGT 59.785 52.381 4.56 0.00 0.00 3.67
52 53 2.936202 CATATGGGGAGAAGGTTGGTG 58.064 52.381 0.00 0.00 0.00 4.17
53 54 1.295020 TATGGGGAGAAGGTTGGTGG 58.705 55.000 0.00 0.00 0.00 4.61
54 55 2.035783 GGGGAGAAGGTTGGTGGC 59.964 66.667 0.00 0.00 0.00 5.01
55 56 2.035783 GGGAGAAGGTTGGTGGCC 59.964 66.667 0.00 0.00 0.00 5.36
56 57 2.840753 GGGAGAAGGTTGGTGGCCA 61.841 63.158 0.00 0.00 0.00 5.36
57 58 1.152830 GGAGAAGGTTGGTGGCCAA 59.847 57.895 7.24 0.00 41.69 4.52
58 59 0.895559 GGAGAAGGTTGGTGGCCAAG 60.896 60.000 7.24 0.00 44.82 3.61
59 60 0.110486 GAGAAGGTTGGTGGCCAAGA 59.890 55.000 7.24 0.00 44.82 3.02
60 61 0.111253 AGAAGGTTGGTGGCCAAGAG 59.889 55.000 7.24 0.00 44.82 2.85
61 62 0.895559 GAAGGTTGGTGGCCAAGAGG 60.896 60.000 7.24 0.00 44.82 3.69
62 63 2.283173 GGTTGGTGGCCAAGAGGG 60.283 66.667 7.24 0.00 44.82 4.30
71 72 2.125350 CCAAGAGGGCGTGAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
72 73 2.654079 CCAAGAGGGCGTGAGAGCT 61.654 63.158 0.00 0.00 37.29 4.09
73 74 1.294780 CAAGAGGGCGTGAGAGCTT 59.705 57.895 0.00 0.00 37.29 3.74
74 75 0.739112 CAAGAGGGCGTGAGAGCTTC 60.739 60.000 0.00 0.00 37.29 3.86
75 76 2.202676 GAGGGCGTGAGAGCTTCG 60.203 66.667 0.00 0.00 37.29 3.79
76 77 2.676822 AGGGCGTGAGAGCTTCGA 60.677 61.111 0.00 0.00 37.29 3.71
77 78 2.202676 GGGCGTGAGAGCTTCGAG 60.203 66.667 0.00 0.00 37.29 4.04
78 79 2.569134 GGCGTGAGAGCTTCGAGT 59.431 61.111 0.00 0.00 37.29 4.18
79 80 1.803519 GGCGTGAGAGCTTCGAGTG 60.804 63.158 0.00 0.00 37.29 3.51
80 81 2.440569 GCGTGAGAGCTTCGAGTGC 61.441 63.158 4.59 4.59 0.00 4.40
81 82 1.211449 CGTGAGAGCTTCGAGTGCT 59.789 57.895 13.60 13.60 44.24 4.40
82 83 0.387878 CGTGAGAGCTTCGAGTGCTT 60.388 55.000 14.63 6.66 41.30 3.91
83 84 1.345410 GTGAGAGCTTCGAGTGCTTC 58.655 55.000 14.63 13.50 41.30 3.86
84 85 0.961753 TGAGAGCTTCGAGTGCTTCA 59.038 50.000 14.63 15.25 41.30 3.02
85 86 1.067985 TGAGAGCTTCGAGTGCTTCAG 60.068 52.381 14.63 0.00 41.30 3.02
86 87 0.246086 AGAGCTTCGAGTGCTTCAGG 59.754 55.000 14.63 0.00 41.30 3.86
87 88 0.244994 GAGCTTCGAGTGCTTCAGGA 59.755 55.000 14.63 0.00 41.30 3.86
88 89 0.246086 AGCTTCGAGTGCTTCAGGAG 59.754 55.000 8.86 0.00 37.52 3.69
89 90 0.739112 GCTTCGAGTGCTTCAGGAGG 60.739 60.000 5.41 0.00 0.00 4.30
90 91 0.108424 CTTCGAGTGCTTCAGGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
91 92 1.544825 TTCGAGTGCTTCAGGAGGGG 61.545 60.000 0.00 0.00 0.00 4.79
92 93 1.984570 CGAGTGCTTCAGGAGGGGA 60.985 63.158 0.00 0.00 0.00 4.81
93 94 1.904032 GAGTGCTTCAGGAGGGGAG 59.096 63.158 0.00 0.00 0.00 4.30
94 95 1.614824 AGTGCTTCAGGAGGGGAGG 60.615 63.158 0.00 0.00 0.00 4.30
95 96 2.285668 TGCTTCAGGAGGGGAGGG 60.286 66.667 0.00 0.00 0.00 4.30
96 97 2.041265 GCTTCAGGAGGGGAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
97 98 1.616628 GCTTCAGGAGGGGAGGGAA 60.617 63.158 0.00 0.00 0.00 3.97
98 99 1.631071 GCTTCAGGAGGGGAGGGAAG 61.631 65.000 0.00 0.00 38.34 3.46
99 100 0.985490 CTTCAGGAGGGGAGGGAAGG 60.985 65.000 0.00 0.00 33.17 3.46
100 101 2.367512 CAGGAGGGGAGGGAAGGG 60.368 72.222 0.00 0.00 0.00 3.95
101 102 4.439901 AGGAGGGGAGGGAAGGGC 62.440 72.222 0.00 0.00 0.00 5.19
102 103 4.760220 GGAGGGGAGGGAAGGGCA 62.760 72.222 0.00 0.00 0.00 5.36
103 104 2.368878 GAGGGGAGGGAAGGGCAT 60.369 66.667 0.00 0.00 0.00 4.40
104 105 2.697644 AGGGGAGGGAAGGGCATG 60.698 66.667 0.00 0.00 0.00 4.06
105 106 3.023735 GGGGAGGGAAGGGCATGT 61.024 66.667 0.00 0.00 0.00 3.21
106 107 2.276740 GGGAGGGAAGGGCATGTG 59.723 66.667 0.00 0.00 0.00 3.21
107 108 2.308722 GGGAGGGAAGGGCATGTGA 61.309 63.158 0.00 0.00 0.00 3.58
108 109 1.649271 GGGAGGGAAGGGCATGTGAT 61.649 60.000 0.00 0.00 0.00 3.06
109 110 0.466922 GGAGGGAAGGGCATGTGATG 60.467 60.000 0.00 0.00 0.00 3.07
110 111 0.466922 GAGGGAAGGGCATGTGATGG 60.467 60.000 0.00 0.00 0.00 3.51
117 118 2.836360 GCATGTGATGGCCTGGGG 60.836 66.667 3.32 0.00 0.00 4.96
118 119 3.009275 CATGTGATGGCCTGGGGA 58.991 61.111 3.32 0.00 0.00 4.81
119 120 1.454479 CATGTGATGGCCTGGGGAC 60.454 63.158 3.32 0.00 0.00 4.46
134 135 3.036084 GACCGCGTCCTGTGTGTG 61.036 66.667 4.92 0.00 0.00 3.82
135 136 4.602259 ACCGCGTCCTGTGTGTGG 62.602 66.667 4.92 0.00 39.18 4.17
136 137 4.602259 CCGCGTCCTGTGTGTGGT 62.602 66.667 4.92 0.00 0.00 4.16
137 138 2.587753 CGCGTCCTGTGTGTGGTT 60.588 61.111 0.00 0.00 0.00 3.67
138 139 2.177580 CGCGTCCTGTGTGTGGTTT 61.178 57.895 0.00 0.00 0.00 3.27
139 140 1.355210 GCGTCCTGTGTGTGGTTTG 59.645 57.895 0.00 0.00 0.00 2.93
140 141 1.373590 GCGTCCTGTGTGTGGTTTGT 61.374 55.000 0.00 0.00 0.00 2.83
141 142 1.091537 CGTCCTGTGTGTGGTTTGTT 58.908 50.000 0.00 0.00 0.00 2.83
142 143 1.202132 CGTCCTGTGTGTGGTTTGTTG 60.202 52.381 0.00 0.00 0.00 3.33
143 144 1.134175 GTCCTGTGTGTGGTTTGTTGG 59.866 52.381 0.00 0.00 0.00 3.77
144 145 0.459489 CCTGTGTGTGGTTTGTTGGG 59.541 55.000 0.00 0.00 0.00 4.12
145 146 1.181786 CTGTGTGTGGTTTGTTGGGT 58.818 50.000 0.00 0.00 0.00 4.51
146 147 1.548269 CTGTGTGTGGTTTGTTGGGTT 59.452 47.619 0.00 0.00 0.00 4.11
147 148 1.273606 TGTGTGTGGTTTGTTGGGTTG 59.726 47.619 0.00 0.00 0.00 3.77
148 149 0.898320 TGTGTGGTTTGTTGGGTTGG 59.102 50.000 0.00 0.00 0.00 3.77
149 150 1.187087 GTGTGGTTTGTTGGGTTGGA 58.813 50.000 0.00 0.00 0.00 3.53
150 151 1.136110 GTGTGGTTTGTTGGGTTGGAG 59.864 52.381 0.00 0.00 0.00 3.86
151 152 1.272760 TGTGGTTTGTTGGGTTGGAGT 60.273 47.619 0.00 0.00 0.00 3.85
152 153 1.136110 GTGGTTTGTTGGGTTGGAGTG 59.864 52.381 0.00 0.00 0.00 3.51
153 154 0.750249 GGTTTGTTGGGTTGGAGTGG 59.250 55.000 0.00 0.00 0.00 4.00
154 155 0.750249 GTTTGTTGGGTTGGAGTGGG 59.250 55.000 0.00 0.00 0.00 4.61
155 156 0.397816 TTTGTTGGGTTGGAGTGGGG 60.398 55.000 0.00 0.00 0.00 4.96
156 157 2.600470 GTTGGGTTGGAGTGGGGC 60.600 66.667 0.00 0.00 0.00 5.80
157 158 2.780924 TTGGGTTGGAGTGGGGCT 60.781 61.111 0.00 0.00 0.00 5.19
158 159 3.145473 TTGGGTTGGAGTGGGGCTG 62.145 63.158 0.00 0.00 0.00 4.85
159 160 3.580319 GGGTTGGAGTGGGGCTGT 61.580 66.667 0.00 0.00 0.00 4.40
160 161 2.228480 GGGTTGGAGTGGGGCTGTA 61.228 63.158 0.00 0.00 0.00 2.74
161 162 1.299976 GGTTGGAGTGGGGCTGTAG 59.700 63.158 0.00 0.00 0.00 2.74
162 163 1.377333 GTTGGAGTGGGGCTGTAGC 60.377 63.158 0.00 0.00 41.14 3.58
163 164 1.538876 TTGGAGTGGGGCTGTAGCT 60.539 57.895 3.63 0.00 41.70 3.32
164 165 1.841302 TTGGAGTGGGGCTGTAGCTG 61.841 60.000 0.00 0.00 41.70 4.24
165 166 2.586792 GAGTGGGGCTGTAGCTGG 59.413 66.667 0.00 0.00 41.70 4.85
166 167 1.990060 GAGTGGGGCTGTAGCTGGA 60.990 63.158 0.00 0.00 41.70 3.86
167 168 1.307343 AGTGGGGCTGTAGCTGGAT 60.307 57.895 0.00 0.00 41.70 3.41
168 169 0.916358 AGTGGGGCTGTAGCTGGATT 60.916 55.000 0.00 0.00 41.70 3.01
169 170 0.034089 GTGGGGCTGTAGCTGGATTT 60.034 55.000 0.00 0.00 41.70 2.17
170 171 0.255890 TGGGGCTGTAGCTGGATTTC 59.744 55.000 0.00 0.00 41.70 2.17
171 172 0.466372 GGGGCTGTAGCTGGATTTCC 60.466 60.000 0.00 0.00 41.70 3.13
172 173 0.548510 GGGCTGTAGCTGGATTTCCT 59.451 55.000 0.00 0.00 41.70 3.36
173 174 1.064389 GGGCTGTAGCTGGATTTCCTT 60.064 52.381 0.00 0.00 41.70 3.36
174 175 2.621668 GGGCTGTAGCTGGATTTCCTTT 60.622 50.000 0.00 0.00 41.70 3.11
175 176 3.092301 GGCTGTAGCTGGATTTCCTTTT 58.908 45.455 0.00 0.00 41.70 2.27
176 177 3.129462 GGCTGTAGCTGGATTTCCTTTTC 59.871 47.826 0.00 0.00 41.70 2.29
177 178 4.013050 GCTGTAGCTGGATTTCCTTTTCT 58.987 43.478 0.00 0.00 38.21 2.52
178 179 4.142513 GCTGTAGCTGGATTTCCTTTTCTG 60.143 45.833 0.00 0.00 38.21 3.02
179 180 4.335416 TGTAGCTGGATTTCCTTTTCTGG 58.665 43.478 0.00 0.00 36.82 3.86
180 181 2.812658 AGCTGGATTTCCTTTTCTGGG 58.187 47.619 0.00 0.00 36.82 4.45
181 182 1.827344 GCTGGATTTCCTTTTCTGGGG 59.173 52.381 0.00 0.00 36.82 4.96
182 183 1.827344 CTGGATTTCCTTTTCTGGGGC 59.173 52.381 0.00 0.00 36.82 5.80
183 184 1.195115 GGATTTCCTTTTCTGGGGCC 58.805 55.000 0.00 0.00 0.00 5.80
184 185 1.552254 GGATTTCCTTTTCTGGGGCCA 60.552 52.381 4.39 0.00 0.00 5.36
185 186 1.827344 GATTTCCTTTTCTGGGGCCAG 59.173 52.381 4.39 0.63 44.86 4.85
186 187 0.178935 TTTCCTTTTCTGGGGCCAGG 60.179 55.000 4.39 1.70 43.75 4.45
187 188 2.037847 CCTTTTCTGGGGCCAGGG 59.962 66.667 4.39 0.00 43.75 4.45
188 189 2.037847 CTTTTCTGGGGCCAGGGG 59.962 66.667 4.39 0.00 43.75 4.79
189 190 3.599933 TTTTCTGGGGCCAGGGGG 61.600 66.667 4.39 0.00 43.75 5.40
190 191 4.626745 TTTCTGGGGCCAGGGGGA 62.627 66.667 4.39 0.00 43.75 4.81
205 206 2.509166 GGGGACCGAATCTTTCCTTT 57.491 50.000 0.00 0.00 40.86 3.11
206 207 2.803956 GGGGACCGAATCTTTCCTTTT 58.196 47.619 0.00 0.00 40.86 2.27
207 208 2.753452 GGGGACCGAATCTTTCCTTTTC 59.247 50.000 0.00 0.00 40.86 2.29
208 209 3.561528 GGGGACCGAATCTTTCCTTTTCT 60.562 47.826 0.00 0.00 40.86 2.52
209 210 4.324022 GGGGACCGAATCTTTCCTTTTCTA 60.324 45.833 0.00 0.00 40.86 2.10
210 211 4.876679 GGGACCGAATCTTTCCTTTTCTAG 59.123 45.833 0.00 0.00 0.00 2.43
211 212 5.489249 GGACCGAATCTTTCCTTTTCTAGT 58.511 41.667 0.00 0.00 0.00 2.57
212 213 5.351740 GGACCGAATCTTTCCTTTTCTAGTG 59.648 44.000 0.00 0.00 0.00 2.74
213 214 5.246307 ACCGAATCTTTCCTTTTCTAGTGG 58.754 41.667 0.00 0.00 0.00 4.00
214 215 5.221864 ACCGAATCTTTCCTTTTCTAGTGGT 60.222 40.000 0.00 0.00 0.00 4.16
215 216 5.122396 CCGAATCTTTCCTTTTCTAGTGGTG 59.878 44.000 0.00 0.00 0.00 4.17
216 217 5.122396 CGAATCTTTCCTTTTCTAGTGGTGG 59.878 44.000 0.00 0.00 0.00 4.61
217 218 3.751518 TCTTTCCTTTTCTAGTGGTGGC 58.248 45.455 0.00 0.00 0.00 5.01
218 219 2.579410 TTCCTTTTCTAGTGGTGGCC 57.421 50.000 0.00 0.00 0.00 5.36
219 220 0.323629 TCCTTTTCTAGTGGTGGCCG 59.676 55.000 0.00 0.00 0.00 6.13
220 221 1.305930 CCTTTTCTAGTGGTGGCCGC 61.306 60.000 8.12 8.12 0.00 6.53
221 222 0.321653 CTTTTCTAGTGGTGGCCGCT 60.322 55.000 17.49 6.48 46.90 5.52
222 223 0.321298 TTTTCTAGTGGTGGCCGCTC 60.321 55.000 17.49 9.96 40.81 5.03
223 224 2.501223 TTTCTAGTGGTGGCCGCTCG 62.501 60.000 17.49 0.00 40.81 5.03
224 225 4.514577 CTAGTGGTGGCCGCTCGG 62.515 72.222 17.49 3.56 40.81 4.63
247 248 4.232878 CTAGGGAGCAGCTGGCCG 62.233 72.222 17.12 0.00 46.50 6.13
257 258 4.228567 GCTGGCCGCTCCCTAGAC 62.229 72.222 11.61 0.00 35.14 2.59
258 259 3.905678 CTGGCCGCTCCCTAGACG 61.906 72.222 0.00 0.00 0.00 4.18
348 383 3.253188 TCGATTTGGTTCCAAGCTTTGAG 59.747 43.478 0.00 0.00 0.00 3.02
352 387 0.315251 GGTTCCAAGCTTTGAGCACC 59.685 55.000 14.85 10.33 45.56 5.01
365 400 1.402613 TGAGCACCGAATGAATGCATG 59.597 47.619 0.00 0.00 41.97 4.06
367 402 2.093890 AGCACCGAATGAATGCATGAA 58.906 42.857 0.00 0.00 41.97 2.57
368 403 2.691526 AGCACCGAATGAATGCATGAAT 59.308 40.909 0.00 0.00 41.97 2.57
387 429 1.047002 TCAATGCACAAGGGTTTGGG 58.953 50.000 0.00 0.00 40.80 4.12
391 433 4.929807 CACAAGGGTTTGGGCTCT 57.070 55.556 0.00 0.00 38.66 4.09
392 434 3.131850 CACAAGGGTTTGGGCTCTT 57.868 52.632 0.00 0.00 38.66 2.85
393 435 2.286365 CACAAGGGTTTGGGCTCTTA 57.714 50.000 0.00 0.00 38.66 2.10
396 438 3.005791 CACAAGGGTTTGGGCTCTTAAAG 59.994 47.826 0.00 0.00 38.66 1.85
398 440 3.895041 CAAGGGTTTGGGCTCTTAAAGAA 59.105 43.478 0.00 0.00 0.00 2.52
401 443 3.195610 GGGTTTGGGCTCTTAAAGAATGG 59.804 47.826 0.00 0.00 0.00 3.16
402 444 3.832490 GGTTTGGGCTCTTAAAGAATGGT 59.168 43.478 0.00 0.00 0.00 3.55
403 445 4.082190 GGTTTGGGCTCTTAAAGAATGGTC 60.082 45.833 0.00 0.00 0.00 4.02
404 446 4.657814 TTGGGCTCTTAAAGAATGGTCT 57.342 40.909 0.00 0.00 34.72 3.85
405 447 3.955471 TGGGCTCTTAAAGAATGGTCTG 58.045 45.455 0.00 0.00 33.05 3.51
406 448 3.330701 TGGGCTCTTAAAGAATGGTCTGT 59.669 43.478 0.00 0.00 33.05 3.41
407 449 3.942115 GGGCTCTTAAAGAATGGTCTGTC 59.058 47.826 0.00 0.00 33.05 3.51
408 450 4.323868 GGGCTCTTAAAGAATGGTCTGTCT 60.324 45.833 0.00 0.00 33.05 3.41
409 451 5.104900 GGGCTCTTAAAGAATGGTCTGTCTA 60.105 44.000 0.00 0.00 33.05 2.59
410 452 6.045955 GGCTCTTAAAGAATGGTCTGTCTAG 58.954 44.000 0.00 0.00 33.05 2.43
411 453 6.045955 GCTCTTAAAGAATGGTCTGTCTAGG 58.954 44.000 0.00 0.00 33.05 3.02
412 454 6.127310 GCTCTTAAAGAATGGTCTGTCTAGGA 60.127 42.308 0.00 0.00 33.05 2.94
413 455 7.171630 TCTTAAAGAATGGTCTGTCTAGGAC 57.828 40.000 0.00 0.00 33.05 3.85
414 456 6.724441 TCTTAAAGAATGGTCTGTCTAGGACA 59.276 38.462 0.43 0.43 40.50 4.02
415 457 4.810191 AAGAATGGTCTGTCTAGGACAC 57.190 45.455 0.00 0.00 37.67 3.67
416 458 3.779444 AGAATGGTCTGTCTAGGACACA 58.221 45.455 0.00 0.00 37.67 3.72
417 459 4.357325 AGAATGGTCTGTCTAGGACACAT 58.643 43.478 0.00 0.00 37.67 3.21
418 460 4.404073 AGAATGGTCTGTCTAGGACACATC 59.596 45.833 0.00 0.00 37.67 3.06
419 461 3.458044 TGGTCTGTCTAGGACACATCT 57.542 47.619 0.00 0.00 37.67 2.90
420 462 4.586306 TGGTCTGTCTAGGACACATCTA 57.414 45.455 0.00 0.00 37.67 1.98
421 463 4.527944 TGGTCTGTCTAGGACACATCTAG 58.472 47.826 0.00 0.00 37.67 2.43
422 464 4.227527 TGGTCTGTCTAGGACACATCTAGA 59.772 45.833 0.00 0.00 37.67 2.43
423 465 5.103898 TGGTCTGTCTAGGACACATCTAGAT 60.104 44.000 0.00 0.00 43.25 1.98
424 466 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
456 498 8.654230 AACATAACTATGTCACATCTAAGCTG 57.346 34.615 0.00 0.00 45.55 4.24
457 499 8.011844 ACATAACTATGTCACATCTAAGCTGA 57.988 34.615 0.00 0.00 42.96 4.26
458 500 8.646004 ACATAACTATGTCACATCTAAGCTGAT 58.354 33.333 0.00 0.00 42.96 2.90
459 501 9.486497 CATAACTATGTCACATCTAAGCTGATT 57.514 33.333 0.00 0.00 0.00 2.57
461 503 8.798859 AACTATGTCACATCTAAGCTGATTTT 57.201 30.769 0.00 0.00 0.00 1.82
462 504 8.206325 ACTATGTCACATCTAAGCTGATTTTG 57.794 34.615 0.00 0.00 0.00 2.44
463 505 7.826252 ACTATGTCACATCTAAGCTGATTTTGT 59.174 33.333 0.00 0.00 0.00 2.83
464 506 6.882610 TGTCACATCTAAGCTGATTTTGTT 57.117 33.333 0.00 0.00 0.00 2.83
465 507 7.275888 TGTCACATCTAAGCTGATTTTGTTT 57.724 32.000 0.00 0.00 0.00 2.83
466 508 7.140705 TGTCACATCTAAGCTGATTTTGTTTG 58.859 34.615 0.00 0.00 0.00 2.93
467 509 7.141363 GTCACATCTAAGCTGATTTTGTTTGT 58.859 34.615 0.00 0.00 0.00 2.83
468 510 7.113965 GTCACATCTAAGCTGATTTTGTTTGTG 59.886 37.037 0.00 0.00 0.00 3.33
469 511 6.364165 CACATCTAAGCTGATTTTGTTTGTGG 59.636 38.462 0.00 0.00 0.00 4.17
470 512 6.040842 ACATCTAAGCTGATTTTGTTTGTGGT 59.959 34.615 0.00 0.00 0.00 4.16
471 513 6.072112 TCTAAGCTGATTTTGTTTGTGGTC 57.928 37.500 0.00 0.00 0.00 4.02
472 514 5.827797 TCTAAGCTGATTTTGTTTGTGGTCT 59.172 36.000 0.00 0.00 0.00 3.85
473 515 6.995686 TCTAAGCTGATTTTGTTTGTGGTCTA 59.004 34.615 0.00 0.00 0.00 2.59
474 516 6.655078 AAGCTGATTTTGTTTGTGGTCTAT 57.345 33.333 0.00 0.00 0.00 1.98
475 517 6.655078 AGCTGATTTTGTTTGTGGTCTATT 57.345 33.333 0.00 0.00 0.00 1.73
476 518 7.054491 AGCTGATTTTGTTTGTGGTCTATTT 57.946 32.000 0.00 0.00 0.00 1.40
477 519 7.500141 AGCTGATTTTGTTTGTGGTCTATTTT 58.500 30.769 0.00 0.00 0.00 1.82
478 520 7.986889 AGCTGATTTTGTTTGTGGTCTATTTTT 59.013 29.630 0.00 0.00 0.00 1.94
527 569 9.932207 TGTTACCGTATTATATATTTGTGGGAG 57.068 33.333 0.00 0.00 0.00 4.30
528 570 8.876790 GTTACCGTATTATATATTTGTGGGAGC 58.123 37.037 0.00 0.00 0.00 4.70
529 571 7.253905 ACCGTATTATATATTTGTGGGAGCT 57.746 36.000 0.00 0.00 0.00 4.09
530 572 7.686434 ACCGTATTATATATTTGTGGGAGCTT 58.314 34.615 0.00 0.00 0.00 3.74
531 573 8.818860 ACCGTATTATATATTTGTGGGAGCTTA 58.181 33.333 0.00 0.00 0.00 3.09
532 574 9.314321 CCGTATTATATATTTGTGGGAGCTTAG 57.686 37.037 0.00 0.00 0.00 2.18
537 579 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
538 580 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
539 581 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
540 582 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
541 583 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
542 584 4.030216 TGTGGGAGCTTAGATGTGACATA 58.970 43.478 0.00 0.00 0.00 2.29
543 585 4.141937 TGTGGGAGCTTAGATGTGACATAC 60.142 45.833 0.00 0.00 0.00 2.39
544 586 4.100189 GTGGGAGCTTAGATGTGACATACT 59.900 45.833 0.00 0.48 0.00 2.12
545 587 4.716784 TGGGAGCTTAGATGTGACATACTT 59.283 41.667 0.00 0.00 0.00 2.24
546 588 5.897250 TGGGAGCTTAGATGTGACATACTTA 59.103 40.000 0.00 0.00 0.00 2.24
547 589 6.382859 TGGGAGCTTAGATGTGACATACTTAA 59.617 38.462 0.00 0.00 0.00 1.85
548 590 7.093068 TGGGAGCTTAGATGTGACATACTTAAA 60.093 37.037 0.00 0.00 0.00 1.52
549 591 7.769044 GGGAGCTTAGATGTGACATACTTAAAA 59.231 37.037 0.00 0.00 0.00 1.52
550 592 9.162764 GGAGCTTAGATGTGACATACTTAAAAA 57.837 33.333 0.00 0.00 0.00 1.94
576 618 8.425577 AATCTAGATGTGAATTAGACAAACCG 57.574 34.615 5.86 0.00 0.00 4.44
577 619 4.946784 AGATGTGAATTAGACAAACCGC 57.053 40.909 0.00 0.00 0.00 5.68
578 620 4.579869 AGATGTGAATTAGACAAACCGCT 58.420 39.130 0.00 0.00 0.00 5.52
579 621 5.730550 AGATGTGAATTAGACAAACCGCTA 58.269 37.500 0.00 0.00 0.00 4.26
580 622 6.170506 AGATGTGAATTAGACAAACCGCTAA 58.829 36.000 0.00 0.00 0.00 3.09
581 623 6.653320 AGATGTGAATTAGACAAACCGCTAAA 59.347 34.615 0.00 0.00 31.10 1.85
582 624 6.621316 TGTGAATTAGACAAACCGCTAAAA 57.379 33.333 0.00 0.00 31.10 1.52
583 625 7.028926 TGTGAATTAGACAAACCGCTAAAAA 57.971 32.000 0.00 0.00 31.10 1.94
765 1316 7.985634 AAATGTTGTAATCTTGTGTTGACAC 57.014 32.000 7.31 7.31 46.59 3.67
766 1317 5.493133 TGTTGTAATCTTGTGTTGACACC 57.507 39.130 11.42 0.00 45.88 4.16
792 1343 2.791383 TTCCAAGTTTTGCCGTGATG 57.209 45.000 0.00 0.00 0.00 3.07
901 1453 4.092652 CCGCGCCGTGTAAAACCC 62.093 66.667 0.00 0.00 0.00 4.11
1839 2489 0.602562 CCGTTTACTGGGTCGTGGTA 59.397 55.000 0.00 0.00 0.00 3.25
1845 2495 1.119574 ACTGGGTCGTGGTAGCAACT 61.120 55.000 0.00 0.00 0.00 3.16
2490 3221 5.231991 GGTGTGTGAAAAACTTGCACATTAG 59.768 40.000 3.57 0.00 43.51 1.73
2584 3323 2.728690 TGTTCCTGCAATGCATCAAC 57.271 45.000 8.91 14.56 38.13 3.18
2674 3436 7.268199 TCCTTATCCTTATACTGTGTGTACG 57.732 40.000 0.00 0.00 33.45 3.67
2695 3457 3.365472 GTTCCTGCATTACATTTCCCCT 58.635 45.455 0.00 0.00 0.00 4.79
2846 3770 5.336531 CGAAGAACTATGCGGGTTCCTATAT 60.337 44.000 11.00 0.00 42.63 0.86
2847 3771 6.127814 CGAAGAACTATGCGGGTTCCTATATA 60.128 42.308 11.00 0.00 42.63 0.86
2848 3772 7.416438 CGAAGAACTATGCGGGTTCCTATATAT 60.416 40.741 11.00 0.00 42.63 0.86
2849 3773 8.834004 AAGAACTATGCGGGTTCCTATATATA 57.166 34.615 11.00 0.00 42.63 0.86
2875 3799 1.871408 CGTCTTCAGAGCAGCAACAGT 60.871 52.381 0.00 0.00 0.00 3.55
2951 3875 4.092771 TCGTCGTTAGATGACCAAAGAG 57.907 45.455 0.00 0.00 37.48 2.85
3099 4023 3.277416 AATATGAGGGTCCCTAGGTCC 57.723 52.381 11.58 9.72 31.76 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.208293 CCCACCTAGCTTCTTCTCCAC 59.792 57.143 0.00 0.00 0.00 4.02
1 2 1.573108 CCCACCTAGCTTCTTCTCCA 58.427 55.000 0.00 0.00 0.00 3.86
2 3 0.833949 CCCCACCTAGCTTCTTCTCC 59.166 60.000 0.00 0.00 0.00 3.71
3 4 0.179234 GCCCCACCTAGCTTCTTCTC 59.821 60.000 0.00 0.00 0.00 2.87
5 6 0.107459 CTGCCCCACCTAGCTTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
8 9 0.981277 TACCTGCCCCACCTAGCTTC 60.981 60.000 0.00 0.00 0.00 3.86
9 10 0.983378 CTACCTGCCCCACCTAGCTT 60.983 60.000 0.00 0.00 0.00 3.74
10 11 1.383248 CTACCTGCCCCACCTAGCT 60.383 63.158 0.00 0.00 0.00 3.32
11 12 2.444256 CCTACCTGCCCCACCTAGC 61.444 68.421 0.00 0.00 0.00 3.42
12 13 1.766461 CCCTACCTGCCCCACCTAG 60.766 68.421 0.00 0.00 0.00 3.02
13 14 2.371043 CCCTACCTGCCCCACCTA 59.629 66.667 0.00 0.00 0.00 3.08
14 15 4.760220 CCCCTACCTGCCCCACCT 62.760 72.222 0.00 0.00 0.00 4.00
17 18 2.652932 ATATGCCCCTACCTGCCCCA 62.653 60.000 0.00 0.00 0.00 4.96
18 19 1.852626 ATATGCCCCTACCTGCCCC 60.853 63.158 0.00 0.00 0.00 5.80
19 20 1.380302 CATATGCCCCTACCTGCCC 59.620 63.158 0.00 0.00 0.00 5.36
20 21 1.380302 CCATATGCCCCTACCTGCC 59.620 63.158 0.00 0.00 0.00 4.85
21 22 1.380302 CCCATATGCCCCTACCTGC 59.620 63.158 0.00 0.00 0.00 4.85
22 23 0.475632 TCCCCATATGCCCCTACCTG 60.476 60.000 0.00 0.00 0.00 4.00
23 24 0.178861 CTCCCCATATGCCCCTACCT 60.179 60.000 0.00 0.00 0.00 3.08
24 25 0.178873 TCTCCCCATATGCCCCTACC 60.179 60.000 0.00 0.00 0.00 3.18
25 26 1.630878 CTTCTCCCCATATGCCCCTAC 59.369 57.143 0.00 0.00 0.00 3.18
26 27 1.486943 CCTTCTCCCCATATGCCCCTA 60.487 57.143 0.00 0.00 0.00 3.53
27 28 0.773700 CCTTCTCCCCATATGCCCCT 60.774 60.000 0.00 0.00 0.00 4.79
28 29 1.068352 ACCTTCTCCCCATATGCCCC 61.068 60.000 0.00 0.00 0.00 5.80
29 30 0.853530 AACCTTCTCCCCATATGCCC 59.146 55.000 0.00 0.00 0.00 5.36
30 31 1.479389 CCAACCTTCTCCCCATATGCC 60.479 57.143 0.00 0.00 0.00 4.40
31 32 1.215423 ACCAACCTTCTCCCCATATGC 59.785 52.381 0.00 0.00 0.00 3.14
32 33 2.423373 CCACCAACCTTCTCCCCATATG 60.423 54.545 0.00 0.00 0.00 1.78
33 34 1.852965 CCACCAACCTTCTCCCCATAT 59.147 52.381 0.00 0.00 0.00 1.78
34 35 1.295020 CCACCAACCTTCTCCCCATA 58.705 55.000 0.00 0.00 0.00 2.74
35 36 2.087248 CCACCAACCTTCTCCCCAT 58.913 57.895 0.00 0.00 0.00 4.00
36 37 2.840753 GCCACCAACCTTCTCCCCA 61.841 63.158 0.00 0.00 0.00 4.96
37 38 2.035783 GCCACCAACCTTCTCCCC 59.964 66.667 0.00 0.00 0.00 4.81
38 39 2.035783 GGCCACCAACCTTCTCCC 59.964 66.667 0.00 0.00 0.00 4.30
39 40 0.895559 CTTGGCCACCAACCTTCTCC 60.896 60.000 3.88 0.00 38.75 3.71
40 41 0.110486 TCTTGGCCACCAACCTTCTC 59.890 55.000 3.88 0.00 38.75 2.87
41 42 0.111253 CTCTTGGCCACCAACCTTCT 59.889 55.000 3.88 0.00 38.75 2.85
42 43 0.895559 CCTCTTGGCCACCAACCTTC 60.896 60.000 3.88 0.00 38.75 3.46
43 44 1.153756 CCTCTTGGCCACCAACCTT 59.846 57.895 3.88 0.00 38.75 3.50
44 45 2.845345 CCCTCTTGGCCACCAACCT 61.845 63.158 3.88 0.00 38.75 3.50
45 46 2.283173 CCCTCTTGGCCACCAACC 60.283 66.667 3.88 0.00 38.75 3.77
54 55 2.125350 GCTCTCACGCCCTCTTGG 60.125 66.667 0.00 0.00 37.09 3.61
55 56 0.739112 GAAGCTCTCACGCCCTCTTG 60.739 60.000 0.00 0.00 0.00 3.02
56 57 1.594310 GAAGCTCTCACGCCCTCTT 59.406 57.895 0.00 0.00 0.00 2.85
57 58 2.705821 CGAAGCTCTCACGCCCTCT 61.706 63.158 0.00 0.00 0.00 3.69
58 59 2.202676 CGAAGCTCTCACGCCCTC 60.203 66.667 0.00 0.00 0.00 4.30
59 60 2.676822 TCGAAGCTCTCACGCCCT 60.677 61.111 0.00 0.00 0.00 5.19
60 61 2.202676 CTCGAAGCTCTCACGCCC 60.203 66.667 0.00 0.00 0.00 6.13
61 62 1.803519 CACTCGAAGCTCTCACGCC 60.804 63.158 0.00 0.00 0.00 5.68
62 63 2.440569 GCACTCGAAGCTCTCACGC 61.441 63.158 2.49 0.00 0.00 5.34
63 64 0.387878 AAGCACTCGAAGCTCTCACG 60.388 55.000 11.90 0.00 42.53 4.35
64 65 1.336332 TGAAGCACTCGAAGCTCTCAC 60.336 52.381 11.90 5.99 42.53 3.51
65 66 0.961753 TGAAGCACTCGAAGCTCTCA 59.038 50.000 11.90 13.46 42.53 3.27
66 67 1.627879 CTGAAGCACTCGAAGCTCTC 58.372 55.000 11.90 11.56 42.53 3.20
67 68 0.246086 CCTGAAGCACTCGAAGCTCT 59.754 55.000 11.90 3.87 42.53 4.09
68 69 0.244994 TCCTGAAGCACTCGAAGCTC 59.755 55.000 11.90 7.10 42.53 4.09
69 70 0.246086 CTCCTGAAGCACTCGAAGCT 59.754 55.000 6.23 6.23 45.97 3.74
70 71 0.739112 CCTCCTGAAGCACTCGAAGC 60.739 60.000 1.47 1.47 0.00 3.86
71 72 0.108424 CCCTCCTGAAGCACTCGAAG 60.108 60.000 0.00 0.00 0.00 3.79
72 73 1.544825 CCCCTCCTGAAGCACTCGAA 61.545 60.000 0.00 0.00 0.00 3.71
73 74 1.984570 CCCCTCCTGAAGCACTCGA 60.985 63.158 0.00 0.00 0.00 4.04
74 75 1.954362 CTCCCCTCCTGAAGCACTCG 61.954 65.000 0.00 0.00 0.00 4.18
75 76 1.621672 CCTCCCCTCCTGAAGCACTC 61.622 65.000 0.00 0.00 0.00 3.51
76 77 1.614824 CCTCCCCTCCTGAAGCACT 60.615 63.158 0.00 0.00 0.00 4.40
77 78 2.674220 CCCTCCCCTCCTGAAGCAC 61.674 68.421 0.00 0.00 0.00 4.40
78 79 2.285668 CCCTCCCCTCCTGAAGCA 60.286 66.667 0.00 0.00 0.00 3.91
79 80 1.616628 TTCCCTCCCCTCCTGAAGC 60.617 63.158 0.00 0.00 0.00 3.86
80 81 0.985490 CCTTCCCTCCCCTCCTGAAG 60.985 65.000 0.00 0.00 33.80 3.02
81 82 1.082954 CCTTCCCTCCCCTCCTGAA 59.917 63.158 0.00 0.00 0.00 3.02
82 83 2.787866 CCTTCCCTCCCCTCCTGA 59.212 66.667 0.00 0.00 0.00 3.86
83 84 2.367512 CCCTTCCCTCCCCTCCTG 60.368 72.222 0.00 0.00 0.00 3.86
84 85 4.439901 GCCCTTCCCTCCCCTCCT 62.440 72.222 0.00 0.00 0.00 3.69
85 86 4.760220 TGCCCTTCCCTCCCCTCC 62.760 72.222 0.00 0.00 0.00 4.30
86 87 2.368878 ATGCCCTTCCCTCCCCTC 60.369 66.667 0.00 0.00 0.00 4.30
87 88 2.697644 CATGCCCTTCCCTCCCCT 60.698 66.667 0.00 0.00 0.00 4.79
88 89 3.023735 ACATGCCCTTCCCTCCCC 61.024 66.667 0.00 0.00 0.00 4.81
89 90 1.649271 ATCACATGCCCTTCCCTCCC 61.649 60.000 0.00 0.00 0.00 4.30
90 91 0.466922 CATCACATGCCCTTCCCTCC 60.467 60.000 0.00 0.00 0.00 4.30
91 92 0.466922 CCATCACATGCCCTTCCCTC 60.467 60.000 0.00 0.00 0.00 4.30
92 93 1.616921 CCATCACATGCCCTTCCCT 59.383 57.895 0.00 0.00 0.00 4.20
93 94 2.129785 GCCATCACATGCCCTTCCC 61.130 63.158 0.00 0.00 0.00 3.97
94 95 2.129785 GGCCATCACATGCCCTTCC 61.130 63.158 0.00 0.00 41.97 3.46
95 96 3.530067 GGCCATCACATGCCCTTC 58.470 61.111 0.00 0.00 41.97 3.46
100 101 2.836360 CCCCAGGCCATCACATGC 60.836 66.667 5.01 0.00 0.00 4.06
101 102 1.454479 GTCCCCAGGCCATCACATG 60.454 63.158 5.01 0.00 0.00 3.21
102 103 2.693871 GGTCCCCAGGCCATCACAT 61.694 63.158 5.01 0.00 0.00 3.21
103 104 3.338250 GGTCCCCAGGCCATCACA 61.338 66.667 5.01 0.00 0.00 3.58
104 105 4.489771 CGGTCCCCAGGCCATCAC 62.490 72.222 5.01 0.00 0.00 3.06
117 118 3.036084 CACACACAGGACGCGGTC 61.036 66.667 12.47 5.53 0.00 4.79
118 119 4.602259 CCACACACAGGACGCGGT 62.602 66.667 12.47 0.00 0.00 5.68
119 120 4.602259 ACCACACACAGGACGCGG 62.602 66.667 12.47 0.00 0.00 6.46
120 121 2.177580 AAACCACACACAGGACGCG 61.178 57.895 3.53 3.53 0.00 6.01
121 122 1.355210 CAAACCACACACAGGACGC 59.645 57.895 0.00 0.00 0.00 5.19
122 123 1.091537 AACAAACCACACACAGGACG 58.908 50.000 0.00 0.00 0.00 4.79
123 124 1.134175 CCAACAAACCACACACAGGAC 59.866 52.381 0.00 0.00 0.00 3.85
124 125 1.468985 CCAACAAACCACACACAGGA 58.531 50.000 0.00 0.00 0.00 3.86
125 126 0.459489 CCCAACAAACCACACACAGG 59.541 55.000 0.00 0.00 0.00 4.00
126 127 1.181786 ACCCAACAAACCACACACAG 58.818 50.000 0.00 0.00 0.00 3.66
127 128 1.273606 CAACCCAACAAACCACACACA 59.726 47.619 0.00 0.00 0.00 3.72
128 129 1.404851 CCAACCCAACAAACCACACAC 60.405 52.381 0.00 0.00 0.00 3.82
129 130 0.898320 CCAACCCAACAAACCACACA 59.102 50.000 0.00 0.00 0.00 3.72
130 131 1.136110 CTCCAACCCAACAAACCACAC 59.864 52.381 0.00 0.00 0.00 3.82
131 132 1.272760 ACTCCAACCCAACAAACCACA 60.273 47.619 0.00 0.00 0.00 4.17
132 133 1.136110 CACTCCAACCCAACAAACCAC 59.864 52.381 0.00 0.00 0.00 4.16
133 134 1.479709 CACTCCAACCCAACAAACCA 58.520 50.000 0.00 0.00 0.00 3.67
134 135 0.750249 CCACTCCAACCCAACAAACC 59.250 55.000 0.00 0.00 0.00 3.27
135 136 0.750249 CCCACTCCAACCCAACAAAC 59.250 55.000 0.00 0.00 0.00 2.93
136 137 0.397816 CCCCACTCCAACCCAACAAA 60.398 55.000 0.00 0.00 0.00 2.83
137 138 1.231641 CCCCACTCCAACCCAACAA 59.768 57.895 0.00 0.00 0.00 2.83
138 139 2.931107 CCCCACTCCAACCCAACA 59.069 61.111 0.00 0.00 0.00 3.33
139 140 2.600470 GCCCCACTCCAACCCAAC 60.600 66.667 0.00 0.00 0.00 3.77
140 141 2.780924 AGCCCCACTCCAACCCAA 60.781 61.111 0.00 0.00 0.00 4.12
141 142 2.993038 TACAGCCCCACTCCAACCCA 62.993 60.000 0.00 0.00 0.00 4.51
142 143 2.198304 CTACAGCCCCACTCCAACCC 62.198 65.000 0.00 0.00 0.00 4.11
143 144 1.299976 CTACAGCCCCACTCCAACC 59.700 63.158 0.00 0.00 0.00 3.77
144 145 1.377333 GCTACAGCCCCACTCCAAC 60.377 63.158 0.00 0.00 34.31 3.77
145 146 1.538876 AGCTACAGCCCCACTCCAA 60.539 57.895 0.00 0.00 43.38 3.53
146 147 2.122729 AGCTACAGCCCCACTCCA 59.877 61.111 0.00 0.00 43.38 3.86
147 148 2.586792 CAGCTACAGCCCCACTCC 59.413 66.667 0.00 0.00 43.38 3.85
148 149 1.341156 ATCCAGCTACAGCCCCACTC 61.341 60.000 0.00 0.00 43.38 3.51
149 150 0.916358 AATCCAGCTACAGCCCCACT 60.916 55.000 0.00 0.00 43.38 4.00
150 151 0.034089 AAATCCAGCTACAGCCCCAC 60.034 55.000 0.00 0.00 43.38 4.61
151 152 0.255890 GAAATCCAGCTACAGCCCCA 59.744 55.000 0.00 0.00 43.38 4.96
152 153 0.466372 GGAAATCCAGCTACAGCCCC 60.466 60.000 0.00 0.00 43.38 5.80
153 154 0.548510 AGGAAATCCAGCTACAGCCC 59.451 55.000 1.67 0.00 43.38 5.19
154 155 2.426842 AAGGAAATCCAGCTACAGCC 57.573 50.000 1.67 0.00 43.38 4.85
155 156 4.013050 AGAAAAGGAAATCCAGCTACAGC 58.987 43.478 1.67 0.00 42.49 4.40
156 157 4.397417 CCAGAAAAGGAAATCCAGCTACAG 59.603 45.833 1.67 0.00 38.89 2.74
157 158 4.335416 CCAGAAAAGGAAATCCAGCTACA 58.665 43.478 1.67 0.00 38.89 2.74
158 159 3.696548 CCCAGAAAAGGAAATCCAGCTAC 59.303 47.826 1.67 0.00 38.89 3.58
159 160 3.309121 CCCCAGAAAAGGAAATCCAGCTA 60.309 47.826 1.67 0.00 38.89 3.32
160 161 2.558350 CCCCAGAAAAGGAAATCCAGCT 60.558 50.000 1.67 0.00 38.89 4.24
161 162 1.827344 CCCCAGAAAAGGAAATCCAGC 59.173 52.381 1.67 0.00 38.89 4.85
162 163 1.827344 GCCCCAGAAAAGGAAATCCAG 59.173 52.381 1.67 0.00 38.89 3.86
163 164 1.552254 GGCCCCAGAAAAGGAAATCCA 60.552 52.381 1.67 0.00 38.89 3.41
164 165 1.195115 GGCCCCAGAAAAGGAAATCC 58.805 55.000 0.00 0.00 0.00 3.01
165 166 1.827344 CTGGCCCCAGAAAAGGAAATC 59.173 52.381 8.67 0.00 46.30 2.17
166 167 1.553184 CCTGGCCCCAGAAAAGGAAAT 60.553 52.381 15.76 0.00 46.30 2.17
167 168 0.178935 CCTGGCCCCAGAAAAGGAAA 60.179 55.000 15.76 0.00 46.30 3.13
168 169 1.464722 CCTGGCCCCAGAAAAGGAA 59.535 57.895 15.76 0.00 46.30 3.36
169 170 2.547595 CCCTGGCCCCAGAAAAGGA 61.548 63.158 15.76 0.00 46.30 3.36
170 171 2.037847 CCCTGGCCCCAGAAAAGG 59.962 66.667 15.76 4.58 46.30 3.11
171 172 2.037847 CCCCTGGCCCCAGAAAAG 59.962 66.667 15.76 0.00 46.30 2.27
172 173 3.599933 CCCCCTGGCCCCAGAAAA 61.600 66.667 15.76 0.00 46.30 2.29
173 174 4.626745 TCCCCCTGGCCCCAGAAA 62.627 66.667 15.76 0.00 46.30 2.52
180 181 4.191015 GATTCGGTCCCCCTGGCC 62.191 72.222 0.00 0.00 0.00 5.36
181 182 2.211468 AAAGATTCGGTCCCCCTGGC 62.211 60.000 0.00 0.00 0.00 4.85
182 183 0.107165 GAAAGATTCGGTCCCCCTGG 60.107 60.000 0.00 0.00 0.00 4.45
183 184 0.107165 GGAAAGATTCGGTCCCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
184 185 0.253207 AGGAAAGATTCGGTCCCCCT 60.253 55.000 5.37 0.00 31.25 4.79
185 186 0.624254 AAGGAAAGATTCGGTCCCCC 59.376 55.000 5.37 0.00 31.25 5.40
186 187 2.509166 AAAGGAAAGATTCGGTCCCC 57.491 50.000 5.37 0.00 31.25 4.81
187 188 3.687125 AGAAAAGGAAAGATTCGGTCCC 58.313 45.455 5.37 0.00 31.25 4.46
188 189 5.351740 CACTAGAAAAGGAAAGATTCGGTCC 59.648 44.000 0.00 1.53 0.00 4.46
189 190 5.351740 CCACTAGAAAAGGAAAGATTCGGTC 59.648 44.000 0.00 0.00 0.00 4.79
190 191 5.221864 ACCACTAGAAAAGGAAAGATTCGGT 60.222 40.000 0.00 0.00 0.00 4.69
191 192 5.122396 CACCACTAGAAAAGGAAAGATTCGG 59.878 44.000 0.00 0.00 0.00 4.30
192 193 5.122396 CCACCACTAGAAAAGGAAAGATTCG 59.878 44.000 0.00 0.00 0.00 3.34
193 194 5.106118 GCCACCACTAGAAAAGGAAAGATTC 60.106 44.000 0.00 0.00 0.00 2.52
194 195 4.767409 GCCACCACTAGAAAAGGAAAGATT 59.233 41.667 0.00 0.00 0.00 2.40
195 196 4.336280 GCCACCACTAGAAAAGGAAAGAT 58.664 43.478 0.00 0.00 0.00 2.40
196 197 3.497942 GGCCACCACTAGAAAAGGAAAGA 60.498 47.826 0.00 0.00 0.00 2.52
197 198 2.820197 GGCCACCACTAGAAAAGGAAAG 59.180 50.000 0.00 0.00 0.00 2.62
198 199 2.812613 CGGCCACCACTAGAAAAGGAAA 60.813 50.000 2.24 0.00 0.00 3.13
199 200 1.271163 CGGCCACCACTAGAAAAGGAA 60.271 52.381 2.24 0.00 0.00 3.36
200 201 0.323629 CGGCCACCACTAGAAAAGGA 59.676 55.000 2.24 0.00 0.00 3.36
201 202 1.305930 GCGGCCACCACTAGAAAAGG 61.306 60.000 2.24 0.00 0.00 3.11
202 203 0.321653 AGCGGCCACCACTAGAAAAG 60.322 55.000 2.24 0.00 0.00 2.27
203 204 0.321298 GAGCGGCCACCACTAGAAAA 60.321 55.000 2.24 0.00 0.00 2.29
204 205 1.295423 GAGCGGCCACCACTAGAAA 59.705 57.895 2.24 0.00 0.00 2.52
205 206 2.978824 GAGCGGCCACCACTAGAA 59.021 61.111 2.24 0.00 0.00 2.10
206 207 3.449227 CGAGCGGCCACCACTAGA 61.449 66.667 2.24 0.00 0.00 2.43
207 208 4.514577 CCGAGCGGCCACCACTAG 62.515 72.222 2.24 0.00 0.00 2.57
217 218 4.570663 CCTAGCGTTCCCGAGCGG 62.571 72.222 1.06 1.06 38.61 5.52
218 219 4.570663 CCCTAGCGTTCCCGAGCG 62.571 72.222 0.00 0.00 38.61 5.03
219 220 3.140225 CTCCCTAGCGTTCCCGAGC 62.140 68.421 0.00 0.00 35.63 5.03
220 221 3.121019 CTCCCTAGCGTTCCCGAG 58.879 66.667 0.00 0.00 35.63 4.63
221 222 3.145551 GCTCCCTAGCGTTCCCGA 61.146 66.667 0.00 0.00 39.39 5.14
230 231 4.232878 CGGCCAGCTGCTCCCTAG 62.233 72.222 8.66 0.00 40.92 3.02
241 242 3.905678 CGTCTAGGGAGCGGCCAG 61.906 72.222 2.24 0.00 38.95 4.85
247 248 2.707849 TTGGACGCGTCTAGGGAGC 61.708 63.158 35.50 19.20 36.53 4.70
248 249 1.139095 GTTGGACGCGTCTAGGGAG 59.861 63.158 35.50 0.00 36.53 4.30
249 250 1.180456 TTGTTGGACGCGTCTAGGGA 61.180 55.000 35.50 15.12 36.53 4.20
250 251 0.108329 ATTGTTGGACGCGTCTAGGG 60.108 55.000 35.50 0.00 38.93 3.53
251 252 1.278238 GATTGTTGGACGCGTCTAGG 58.722 55.000 35.50 0.00 0.00 3.02
252 253 1.990799 TGATTGTTGGACGCGTCTAG 58.009 50.000 35.50 0.00 0.00 2.43
253 254 2.442212 TTGATTGTTGGACGCGTCTA 57.558 45.000 35.50 29.45 0.00 2.59
254 255 1.732259 GATTGATTGTTGGACGCGTCT 59.268 47.619 35.50 17.48 0.00 4.18
255 256 1.202031 GGATTGATTGTTGGACGCGTC 60.202 52.381 30.67 30.67 0.00 5.19
256 257 0.802494 GGATTGATTGTTGGACGCGT 59.198 50.000 13.85 13.85 0.00 6.01
257 258 0.801872 TGGATTGATTGTTGGACGCG 59.198 50.000 3.53 3.53 0.00 6.01
258 259 2.423185 TGATGGATTGATTGTTGGACGC 59.577 45.455 0.00 0.00 0.00 5.19
259 260 4.700268 TTGATGGATTGATTGTTGGACG 57.300 40.909 0.00 0.00 0.00 4.79
260 261 6.211587 TGATTGATGGATTGATTGTTGGAC 57.788 37.500 0.00 0.00 0.00 4.02
261 262 6.854091 TTGATTGATGGATTGATTGTTGGA 57.146 33.333 0.00 0.00 0.00 3.53
293 294 3.797039 CAGTGCATAGCTTAGCCTGTTA 58.203 45.455 0.00 0.00 0.00 2.41
295 296 1.745141 GCAGTGCATAGCTTAGCCTGT 60.745 52.381 11.09 0.00 34.04 4.00
296 297 0.942962 GCAGTGCATAGCTTAGCCTG 59.057 55.000 11.09 16.76 34.39 4.85
309 310 2.666026 TCGATCGATATCTTGCAGTGC 58.334 47.619 15.15 8.58 0.00 4.40
348 383 2.565210 TTCATGCATTCATTCGGTGC 57.435 45.000 0.00 0.00 39.26 5.01
352 387 5.250667 GCATTGATTCATGCATTCATTCG 57.749 39.130 0.00 0.00 42.90 3.34
365 400 3.328505 CCAAACCCTTGTGCATTGATTC 58.671 45.455 0.00 0.00 0.00 2.52
367 402 1.624813 CCCAAACCCTTGTGCATTGAT 59.375 47.619 0.00 0.00 0.00 2.57
368 403 1.047002 CCCAAACCCTTGTGCATTGA 58.953 50.000 0.00 0.00 0.00 2.57
387 429 6.045955 CCTAGACAGACCATTCTTTAAGAGC 58.954 44.000 0.00 0.00 0.00 4.09
388 430 7.093727 TGTCCTAGACAGACCATTCTTTAAGAG 60.094 40.741 0.00 0.00 37.67 2.85
389 431 6.724441 TGTCCTAGACAGACCATTCTTTAAGA 59.276 38.462 0.00 0.00 37.67 2.10
390 432 6.814146 GTGTCCTAGACAGACCATTCTTTAAG 59.186 42.308 0.00 0.00 43.57 1.85
391 433 6.269077 TGTGTCCTAGACAGACCATTCTTTAA 59.731 38.462 0.00 0.00 43.57 1.52
392 434 5.778241 TGTGTCCTAGACAGACCATTCTTTA 59.222 40.000 0.00 0.00 43.57 1.85
393 435 4.593206 TGTGTCCTAGACAGACCATTCTTT 59.407 41.667 0.00 0.00 43.57 2.52
396 438 4.404073 AGATGTGTCCTAGACAGACCATTC 59.596 45.833 0.00 0.00 43.57 2.67
398 440 3.987745 AGATGTGTCCTAGACAGACCAT 58.012 45.455 0.00 0.00 43.57 3.55
401 443 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
430 472 9.750125 CAGCTTAGATGTGACATAGTTATGTTA 57.250 33.333 0.00 0.00 46.20 2.41
431 473 8.478066 TCAGCTTAGATGTGACATAGTTATGTT 58.522 33.333 0.00 0.00 46.20 2.71
433 475 9.486497 AATCAGCTTAGATGTGACATAGTTATG 57.514 33.333 0.00 0.00 39.55 1.90
435 477 9.890629 AAAATCAGCTTAGATGTGACATAGTTA 57.109 29.630 0.00 0.00 0.00 2.24
436 478 8.671921 CAAAATCAGCTTAGATGTGACATAGTT 58.328 33.333 0.00 0.00 0.00 2.24
437 479 7.826252 ACAAAATCAGCTTAGATGTGACATAGT 59.174 33.333 0.00 0.00 0.00 2.12
438 480 8.206325 ACAAAATCAGCTTAGATGTGACATAG 57.794 34.615 0.00 0.00 0.00 2.23
439 481 8.565896 AACAAAATCAGCTTAGATGTGACATA 57.434 30.769 0.00 0.00 0.00 2.29
440 482 7.458409 AACAAAATCAGCTTAGATGTGACAT 57.542 32.000 0.00 0.00 0.00 3.06
441 483 6.882610 AACAAAATCAGCTTAGATGTGACA 57.117 33.333 0.00 0.00 0.00 3.58
442 484 7.113965 CACAAACAAAATCAGCTTAGATGTGAC 59.886 37.037 0.00 0.00 0.00 3.67
443 485 7.140705 CACAAACAAAATCAGCTTAGATGTGA 58.859 34.615 0.00 0.00 0.00 3.58
444 486 6.364165 CCACAAACAAAATCAGCTTAGATGTG 59.636 38.462 0.00 0.00 0.00 3.21
445 487 6.040842 ACCACAAACAAAATCAGCTTAGATGT 59.959 34.615 0.00 0.00 0.00 3.06
446 488 6.449698 ACCACAAACAAAATCAGCTTAGATG 58.550 36.000 0.00 0.00 0.00 2.90
447 489 6.491403 AGACCACAAACAAAATCAGCTTAGAT 59.509 34.615 0.00 0.00 0.00 1.98
448 490 5.827797 AGACCACAAACAAAATCAGCTTAGA 59.172 36.000 0.00 0.00 0.00 2.10
449 491 6.076981 AGACCACAAACAAAATCAGCTTAG 57.923 37.500 0.00 0.00 0.00 2.18
450 492 7.759489 ATAGACCACAAACAAAATCAGCTTA 57.241 32.000 0.00 0.00 0.00 3.09
451 493 6.655078 ATAGACCACAAACAAAATCAGCTT 57.345 33.333 0.00 0.00 0.00 3.74
452 494 6.655078 AATAGACCACAAACAAAATCAGCT 57.345 33.333 0.00 0.00 0.00 4.24
453 495 7.713764 AAAATAGACCACAAACAAAATCAGC 57.286 32.000 0.00 0.00 0.00 4.26
501 543 9.932207 CTCCCACAAATATATAATACGGTAACA 57.068 33.333 0.00 0.00 0.00 2.41
502 544 8.876790 GCTCCCACAAATATATAATACGGTAAC 58.123 37.037 0.00 0.00 0.00 2.50
503 545 8.818860 AGCTCCCACAAATATATAATACGGTAA 58.181 33.333 0.00 0.00 0.00 2.85
504 546 8.370266 AGCTCCCACAAATATATAATACGGTA 57.630 34.615 0.00 0.00 0.00 4.02
505 547 7.253905 AGCTCCCACAAATATATAATACGGT 57.746 36.000 0.00 0.00 0.00 4.83
506 548 9.314321 CTAAGCTCCCACAAATATATAATACGG 57.686 37.037 0.00 0.00 0.00 4.02
511 553 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
512 554 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
513 555 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
514 556 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
515 557 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
516 558 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
517 559 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
518 560 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
519 561 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
520 562 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
521 563 3.550437 ATGTCACATCTAAGCTCCCAC 57.450 47.619 0.00 0.00 0.00 4.61
522 564 4.290093 AGTATGTCACATCTAAGCTCCCA 58.710 43.478 0.00 0.00 0.00 4.37
523 565 4.946478 AGTATGTCACATCTAAGCTCCC 57.054 45.455 0.00 0.00 0.00 4.30
524 566 8.718102 TTTTAAGTATGTCACATCTAAGCTCC 57.282 34.615 0.00 0.00 0.00 4.70
550 592 8.883731 CGGTTTGTCTAATTCACATCTAGATTT 58.116 33.333 1.33 0.00 0.00 2.17
551 593 7.011482 GCGGTTTGTCTAATTCACATCTAGATT 59.989 37.037 1.33 0.00 0.00 2.40
552 594 6.480320 GCGGTTTGTCTAATTCACATCTAGAT 59.520 38.462 0.00 0.00 0.00 1.98
553 595 5.810587 GCGGTTTGTCTAATTCACATCTAGA 59.189 40.000 0.00 0.00 0.00 2.43
554 596 5.812642 AGCGGTTTGTCTAATTCACATCTAG 59.187 40.000 0.00 0.00 0.00 2.43
555 597 5.730550 AGCGGTTTGTCTAATTCACATCTA 58.269 37.500 0.00 0.00 0.00 1.98
556 598 4.579869 AGCGGTTTGTCTAATTCACATCT 58.420 39.130 0.00 0.00 0.00 2.90
557 599 4.946784 AGCGGTTTGTCTAATTCACATC 57.053 40.909 0.00 0.00 0.00 3.06
558 600 6.811253 TTTAGCGGTTTGTCTAATTCACAT 57.189 33.333 0.00 0.00 0.00 3.21
559 601 6.621316 TTTTAGCGGTTTGTCTAATTCACA 57.379 33.333 0.00 0.00 0.00 3.58
583 625 9.751542 GTGCTCTTCTACATGTAATATACTGTT 57.248 33.333 7.06 0.00 0.00 3.16
584 626 8.914011 TGTGCTCTTCTACATGTAATATACTGT 58.086 33.333 7.06 0.00 0.00 3.55
585 627 9.920133 ATGTGCTCTTCTACATGTAATATACTG 57.080 33.333 7.06 0.00 36.26 2.74
731 1282 9.502091 ACAAGATTACAACATTTACTTGCTAGA 57.498 29.630 1.04 0.00 37.38 2.43
733 1284 9.062524 ACACAAGATTACAACATTTACTTGCTA 57.937 29.630 0.00 0.00 37.38 3.49
735 1286 8.479280 CAACACAAGATTACAACATTTACTTGC 58.521 33.333 0.00 0.00 37.38 4.01
736 1287 9.729023 TCAACACAAGATTACAACATTTACTTG 57.271 29.630 0.00 0.00 39.02 3.16
739 1290 8.953990 GTGTCAACACAAGATTACAACATTTAC 58.046 33.333 8.37 0.00 45.75 2.01
741 1292 7.985634 GTGTCAACACAAGATTACAACATTT 57.014 32.000 8.37 0.00 45.75 2.32
756 1307 5.067283 ACTTGGAAATTACTGGTGTCAACAC 59.933 40.000 4.67 4.67 45.72 3.32
765 1316 3.987220 CGGCAAAACTTGGAAATTACTGG 59.013 43.478 0.00 0.00 0.00 4.00
766 1317 4.444056 CACGGCAAAACTTGGAAATTACTG 59.556 41.667 0.00 0.00 0.00 2.74
901 1453 4.484537 AGAGTGTGGAGAATTCATGGAG 57.515 45.455 8.44 0.00 0.00 3.86
1126 1765 2.202797 CATCAGGAGCACCGTCGG 60.203 66.667 10.48 10.48 41.83 4.79
1839 2489 1.682854 CATGTCACCACCAAAGTTGCT 59.317 47.619 0.00 0.00 0.00 3.91
1845 2495 0.827089 CCTGCCATGTCACCACCAAA 60.827 55.000 0.00 0.00 0.00 3.28
2126 2776 0.668706 GCTCTTGTGCAAGCTCTCGA 60.669 55.000 7.03 0.00 38.28 4.04
2458 3187 2.593346 TTTTCACACACCCATGCAAC 57.407 45.000 0.00 0.00 0.00 4.17
2490 3221 3.259876 TGTCCCTGTTGATGGTACTACAC 59.740 47.826 0.00 0.00 0.00 2.90
2584 3323 4.392138 GCTAACTAGGTAAACTGTTGCCAG 59.608 45.833 14.21 11.71 41.73 4.85
2674 3436 3.365472 AGGGGAAATGTAATGCAGGAAC 58.635 45.455 0.00 0.00 0.00 3.62
2695 3457 9.448438 GGTGCATACCAATAATAGATACATCAA 57.552 33.333 0.00 0.00 46.71 2.57
2846 3770 1.681793 GCTCTGAAGACGCCACCTATA 59.318 52.381 0.00 0.00 0.00 1.31
2847 3771 0.461961 GCTCTGAAGACGCCACCTAT 59.538 55.000 0.00 0.00 0.00 2.57
2848 3772 0.898326 TGCTCTGAAGACGCCACCTA 60.898 55.000 0.00 0.00 0.00 3.08
2849 3773 2.164865 CTGCTCTGAAGACGCCACCT 62.165 60.000 0.00 0.00 0.00 4.00
2856 3780 1.876322 ACTGTTGCTGCTCTGAAGAC 58.124 50.000 0.00 0.00 0.00 3.01
2951 3875 0.593128 ACAGAGCGACAAATGTTGGC 59.407 50.000 3.10 3.19 34.51 4.52
3032 3956 5.645067 TCAAGAAAGAAGATATGCAGGTGTG 59.355 40.000 0.00 0.00 0.00 3.82
3099 4023 9.035607 GTTTGACACTTATATCACTGATGGTAG 57.964 37.037 1.42 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.