Multiple sequence alignment - TraesCS1D01G393400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G393400 chr1D 100.000 2431 0 0 1 2431 462976906 462979336 0.000000e+00 4490.0
1 TraesCS1D01G393400 chr1D 99.734 376 0 1 1 376 363512383 363512009 0.000000e+00 688.0
2 TraesCS1D01G393400 chr7D 98.207 2064 27 6 374 2431 195367464 195365405 0.000000e+00 3598.0
3 TraesCS1D01G393400 chr7D 98.324 1730 25 3 705 2431 446941251 446939523 0.000000e+00 3031.0
4 TraesCS1D01G393400 chr7D 99.468 376 1 1 1 376 571887386 571887012 0.000000e+00 682.0
5 TraesCS1D01G393400 chr7D 99.202 376 3 0 1 376 13378747 13379122 0.000000e+00 678.0
6 TraesCS1D01G393400 chr7D 97.802 364 5 2 385 748 446941608 446941248 2.050000e-175 625.0
7 TraesCS1D01G393400 chr5D 97.878 2074 22 9 373 2431 552051828 552053894 0.000000e+00 3567.0
8 TraesCS1D01G393400 chr5D 86.994 346 30 7 373 713 417489386 417489721 2.280000e-100 375.0
9 TraesCS1D01G393400 chrUn 97.813 2058 39 4 374 2431 90492985 90490934 0.000000e+00 3546.0
10 TraesCS1D01G393400 chrUn 95.616 1095 41 3 1168 2261 248893299 248892211 0.000000e+00 1749.0
11 TraesCS1D01G393400 chrUn 95.616 1095 41 3 1168 2261 269803070 269801982 0.000000e+00 1749.0
12 TraesCS1D01G393400 chrUn 94.406 715 31 5 374 1086 248895295 248894588 0.000000e+00 1090.0
13 TraesCS1D01G393400 chrUn 97.586 580 11 3 1684 2262 248894217 248893640 0.000000e+00 990.0
14 TraesCS1D01G393400 chr5A 97.523 2059 47 3 374 2431 540849784 540851839 0.000000e+00 3517.0
15 TraesCS1D01G393400 chr6B 95.807 1097 39 4 1168 2261 92402266 92403358 0.000000e+00 1764.0
16 TraesCS1D01G393400 chr6B 86.869 198 20 4 919 1115 31784794 31784986 1.460000e-52 217.0
17 TraesCS1D01G393400 chr6B 100.000 42 0 0 2390 2431 648274641 648274682 7.210000e-11 78.7
18 TraesCS1D01G393400 chr6A 95.616 1095 43 4 1170 2261 612594870 612593778 0.000000e+00 1751.0
19 TraesCS1D01G393400 chr1A 95.973 894 32 3 608 1501 7109442 7108553 0.000000e+00 1448.0
20 TraesCS1D01G393400 chr1A 96.913 583 13 3 1684 2262 7108554 7107973 0.000000e+00 972.0
21 TraesCS1D01G393400 chr1A 93.082 318 16 4 374 689 7109756 7109443 6.120000e-126 460.0
22 TraesCS1D01G393400 chr4D 99.468 376 2 0 1 376 461831980 461832355 0.000000e+00 684.0
23 TraesCS1D01G393400 chr4D 99.468 376 1 1 1 376 453139589 453139215 0.000000e+00 682.0
24 TraesCS1D01G393400 chr3D 99.468 376 1 1 1 376 20567875 20567501 0.000000e+00 682.0
25 TraesCS1D01G393400 chr3D 99.468 376 1 1 1 376 236679542 236679916 0.000000e+00 682.0
26 TraesCS1D01G393400 chr3D 99.202 376 3 0 1 376 129457331 129456956 0.000000e+00 678.0
27 TraesCS1D01G393400 chr2D 99.468 376 0 2 1 376 606580419 606580046 0.000000e+00 682.0
28 TraesCS1D01G393400 chr7B 93.355 301 18 2 713 1013 72035320 72035022 6.170000e-121 444.0
29 TraesCS1D01G393400 chr7B 86.869 198 20 4 919 1115 286040666 286040858 1.460000e-52 217.0
30 TraesCS1D01G393400 chr2B 84.797 467 44 14 373 836 729172916 729173358 6.170000e-121 444.0
31 TraesCS1D01G393400 chr3B 93.023 301 18 3 713 1013 500511450 500511747 1.030000e-118 436.0
32 TraesCS1D01G393400 chr3B 100.000 42 0 0 2390 2431 513680336 513680295 7.210000e-11 78.7
33 TraesCS1D01G393400 chr5B 100.000 42 0 0 2390 2431 347978712 347978753 7.210000e-11 78.7
34 TraesCS1D01G393400 chr4B 100.000 42 0 0 2390 2431 128953657 128953616 7.210000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G393400 chr1D 462976906 462979336 2430 False 4490.000000 4490 100.000000 1 2431 1 chr1D.!!$F1 2430
1 TraesCS1D01G393400 chr7D 195365405 195367464 2059 True 3598.000000 3598 98.207000 374 2431 1 chr7D.!!$R1 2057
2 TraesCS1D01G393400 chr7D 446939523 446941608 2085 True 1828.000000 3031 98.063000 385 2431 2 chr7D.!!$R3 2046
3 TraesCS1D01G393400 chr5D 552051828 552053894 2066 False 3567.000000 3567 97.878000 373 2431 1 chr5D.!!$F2 2058
4 TraesCS1D01G393400 chrUn 90490934 90492985 2051 True 3546.000000 3546 97.813000 374 2431 1 chrUn.!!$R1 2057
5 TraesCS1D01G393400 chrUn 269801982 269803070 1088 True 1749.000000 1749 95.616000 1168 2261 1 chrUn.!!$R2 1093
6 TraesCS1D01G393400 chrUn 248892211 248895295 3084 True 1276.333333 1749 95.869333 374 2262 3 chrUn.!!$R3 1888
7 TraesCS1D01G393400 chr5A 540849784 540851839 2055 False 3517.000000 3517 97.523000 374 2431 1 chr5A.!!$F1 2057
8 TraesCS1D01G393400 chr6B 92402266 92403358 1092 False 1764.000000 1764 95.807000 1168 2261 1 chr6B.!!$F2 1093
9 TraesCS1D01G393400 chr6A 612593778 612594870 1092 True 1751.000000 1751 95.616000 1170 2261 1 chr6A.!!$R1 1091
10 TraesCS1D01G393400 chr1A 7107973 7109756 1783 True 960.000000 1448 95.322667 374 2262 3 chr1A.!!$R1 1888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.040958 GCTGCAACAGTTGAACGAGG 60.041 55.0 17.99 0.0 33.43 4.63 F
301 302 0.112412 GCAAGGTTCAGGGGGAGAAA 59.888 55.0 0.00 0.0 0.00 2.52 F
319 320 0.582005 AAACTTCACAAGCTCGTCGC 59.418 50.0 0.00 0.0 39.57 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1235 1371 2.319841 GCATCTGCCATCGCGCATA 61.320 57.895 8.75 0.0 38.30 3.14 R
1323 1461 2.409870 CGGGAAGGTGATGCTTGCC 61.410 63.158 0.00 0.0 37.65 4.52 R
1534 2916 2.542595 GTGCCACGTGTACTATATTGCC 59.457 50.000 15.65 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.487211 TCAGCAGACATGTGGGCT 58.513 55.556 13.58 13.58 36.99 5.19
18 19 3.587095 CAGCAGACATGTGGGCTG 58.413 61.111 25.30 25.30 46.47 4.85
19 20 3.487211 AGCAGACATGTGGGCTGA 58.513 55.556 17.48 0.00 34.83 4.26
20 21 1.763120 AGCAGACATGTGGGCTGAA 59.237 52.632 17.48 0.00 34.83 3.02
21 22 0.607489 AGCAGACATGTGGGCTGAAC 60.607 55.000 17.48 2.32 34.83 3.18
22 23 0.890542 GCAGACATGTGGGCTGAACA 60.891 55.000 15.27 0.00 0.00 3.18
23 24 0.877071 CAGACATGTGGGCTGAACAC 59.123 55.000 1.15 0.00 39.26 3.32
24 25 0.250901 AGACATGTGGGCTGAACACC 60.251 55.000 1.15 0.00 38.05 4.16
25 26 1.577328 GACATGTGGGCTGAACACCG 61.577 60.000 1.15 0.00 38.05 4.94
26 27 1.600636 CATGTGGGCTGAACACCGT 60.601 57.895 0.00 0.00 38.05 4.83
27 28 0.321210 CATGTGGGCTGAACACCGTA 60.321 55.000 0.00 0.00 38.05 4.02
28 29 0.321298 ATGTGGGCTGAACACCGTAC 60.321 55.000 0.00 0.00 38.05 3.67
29 30 1.070105 GTGGGCTGAACACCGTACA 59.930 57.895 0.00 0.00 32.80 2.90
30 31 0.533308 GTGGGCTGAACACCGTACAA 60.533 55.000 0.00 0.00 32.80 2.41
31 32 0.180642 TGGGCTGAACACCGTACAAA 59.819 50.000 0.00 0.00 0.00 2.83
32 33 0.589708 GGGCTGAACACCGTACAAAC 59.410 55.000 0.00 0.00 0.00 2.93
33 34 0.589708 GGCTGAACACCGTACAAACC 59.410 55.000 0.00 0.00 0.00 3.27
34 35 0.589708 GCTGAACACCGTACAAACCC 59.410 55.000 0.00 0.00 0.00 4.11
35 36 1.232119 CTGAACACCGTACAAACCCC 58.768 55.000 0.00 0.00 0.00 4.95
36 37 0.838608 TGAACACCGTACAAACCCCT 59.161 50.000 0.00 0.00 0.00 4.79
37 38 2.037511 CTGAACACCGTACAAACCCCTA 59.962 50.000 0.00 0.00 0.00 3.53
38 39 2.224257 TGAACACCGTACAAACCCCTAC 60.224 50.000 0.00 0.00 0.00 3.18
39 40 0.686789 ACACCGTACAAACCCCTACC 59.313 55.000 0.00 0.00 0.00 3.18
40 41 0.686224 CACCGTACAAACCCCTACCA 59.314 55.000 0.00 0.00 0.00 3.25
41 42 1.279846 CACCGTACAAACCCCTACCAT 59.720 52.381 0.00 0.00 0.00 3.55
42 43 1.987368 ACCGTACAAACCCCTACCATT 59.013 47.619 0.00 0.00 0.00 3.16
43 44 3.055240 CACCGTACAAACCCCTACCATTA 60.055 47.826 0.00 0.00 0.00 1.90
44 45 3.781965 ACCGTACAAACCCCTACCATTAT 59.218 43.478 0.00 0.00 0.00 1.28
45 46 4.141642 ACCGTACAAACCCCTACCATTATC 60.142 45.833 0.00 0.00 0.00 1.75
46 47 4.102054 CCGTACAAACCCCTACCATTATCT 59.898 45.833 0.00 0.00 0.00 1.98
47 48 5.305128 CCGTACAAACCCCTACCATTATCTA 59.695 44.000 0.00 0.00 0.00 1.98
48 49 6.013984 CCGTACAAACCCCTACCATTATCTAT 60.014 42.308 0.00 0.00 0.00 1.98
49 50 6.872020 CGTACAAACCCCTACCATTATCTATG 59.128 42.308 0.00 0.00 0.00 2.23
50 51 7.256048 CGTACAAACCCCTACCATTATCTATGA 60.256 40.741 0.00 0.00 36.26 2.15
51 52 7.460214 ACAAACCCCTACCATTATCTATGAA 57.540 36.000 0.00 0.00 36.26 2.57
52 53 7.518188 ACAAACCCCTACCATTATCTATGAAG 58.482 38.462 0.00 0.00 36.26 3.02
53 54 7.349859 ACAAACCCCTACCATTATCTATGAAGA 59.650 37.037 0.00 0.00 36.26 2.87
54 55 8.386264 CAAACCCCTACCATTATCTATGAAGAT 58.614 37.037 0.00 0.00 44.80 2.40
55 56 9.629649 AAACCCCTACCATTATCTATGAAGATA 57.370 33.333 0.00 0.00 42.61 1.98
67 68 6.856135 TCTATGAAGATAATGCTGCTTGTG 57.144 37.500 0.00 0.00 0.00 3.33
68 69 6.351711 TCTATGAAGATAATGCTGCTTGTGT 58.648 36.000 0.00 0.00 0.00 3.72
69 70 5.909621 ATGAAGATAATGCTGCTTGTGTT 57.090 34.783 0.00 0.00 0.00 3.32
70 71 5.050644 TGAAGATAATGCTGCTTGTGTTG 57.949 39.130 0.00 0.00 0.00 3.33
71 72 3.498927 AGATAATGCTGCTTGTGTTGC 57.501 42.857 0.00 0.00 0.00 4.17
72 73 2.821378 AGATAATGCTGCTTGTGTTGCA 59.179 40.909 0.00 0.00 39.83 4.08
73 74 2.420628 TAATGCTGCTTGTGTTGCAC 57.579 45.000 0.00 0.00 38.29 4.57
74 75 0.460722 AATGCTGCTTGTGTTGCACA 59.539 45.000 0.00 0.00 43.02 4.57
82 83 3.871701 TGTGTTGCACAAGTCCAGA 57.128 47.368 0.00 0.00 41.69 3.86
83 84 2.346766 TGTGTTGCACAAGTCCAGAT 57.653 45.000 0.00 0.00 41.69 2.90
84 85 1.948834 TGTGTTGCACAAGTCCAGATG 59.051 47.619 0.00 0.00 41.69 2.90
85 86 1.267806 GTGTTGCACAAGTCCAGATGG 59.732 52.381 0.00 0.00 34.08 3.51
86 87 0.883833 GTTGCACAAGTCCAGATGGG 59.116 55.000 0.00 0.00 35.41 4.00
87 88 0.478072 TTGCACAAGTCCAGATGGGT 59.522 50.000 0.00 0.00 38.11 4.51
88 89 0.478072 TGCACAAGTCCAGATGGGTT 59.522 50.000 0.00 0.00 38.11 4.11
89 90 1.702401 TGCACAAGTCCAGATGGGTTA 59.298 47.619 0.00 0.00 38.11 2.85
90 91 2.308570 TGCACAAGTCCAGATGGGTTAT 59.691 45.455 0.00 0.00 38.11 1.89
91 92 2.684881 GCACAAGTCCAGATGGGTTATG 59.315 50.000 0.00 0.00 38.11 1.90
92 93 3.873801 GCACAAGTCCAGATGGGTTATGT 60.874 47.826 0.00 0.00 38.11 2.29
93 94 3.691118 CACAAGTCCAGATGGGTTATGTG 59.309 47.826 0.00 6.37 37.68 3.21
94 95 3.587061 ACAAGTCCAGATGGGTTATGTGA 59.413 43.478 0.00 0.00 38.11 3.58
95 96 4.042809 ACAAGTCCAGATGGGTTATGTGAA 59.957 41.667 0.00 0.00 38.11 3.18
96 97 4.494091 AGTCCAGATGGGTTATGTGAAG 57.506 45.455 0.00 0.00 38.11 3.02
97 98 4.104086 AGTCCAGATGGGTTATGTGAAGA 58.896 43.478 0.00 0.00 38.11 2.87
98 99 4.163078 AGTCCAGATGGGTTATGTGAAGAG 59.837 45.833 0.00 0.00 38.11 2.85
99 100 4.080863 GTCCAGATGGGTTATGTGAAGAGT 60.081 45.833 0.00 0.00 38.11 3.24
100 101 5.128827 GTCCAGATGGGTTATGTGAAGAGTA 59.871 44.000 0.00 0.00 38.11 2.59
101 102 5.724370 TCCAGATGGGTTATGTGAAGAGTAA 59.276 40.000 0.00 0.00 38.11 2.24
102 103 5.817816 CCAGATGGGTTATGTGAAGAGTAAC 59.182 44.000 0.00 0.00 31.96 2.50
103 104 5.817816 CAGATGGGTTATGTGAAGAGTAACC 59.182 44.000 5.23 5.23 44.15 2.85
104 105 5.726793 AGATGGGTTATGTGAAGAGTAACCT 59.273 40.000 11.87 0.00 44.26 3.50
105 106 5.416271 TGGGTTATGTGAAGAGTAACCTC 57.584 43.478 11.87 4.94 44.26 3.85
106 107 4.841813 TGGGTTATGTGAAGAGTAACCTCA 59.158 41.667 11.87 6.92 44.26 3.86
107 108 5.176592 GGGTTATGTGAAGAGTAACCTCAC 58.823 45.833 11.87 0.00 44.26 3.51
108 109 5.279809 GGGTTATGTGAAGAGTAACCTCACA 60.280 44.000 11.87 6.59 44.26 3.58
109 110 6.228258 GGTTATGTGAAGAGTAACCTCACAA 58.772 40.000 8.08 0.00 43.25 3.33
110 111 6.708949 GGTTATGTGAAGAGTAACCTCACAAA 59.291 38.462 8.08 2.76 43.25 2.83
111 112 7.095187 GGTTATGTGAAGAGTAACCTCACAAAG 60.095 40.741 8.08 0.00 43.25 2.77
112 113 4.127171 TGTGAAGAGTAACCTCACAAAGC 58.873 43.478 1.80 0.00 40.40 3.51
113 114 4.127171 GTGAAGAGTAACCTCACAAAGCA 58.873 43.478 0.00 0.00 40.40 3.91
114 115 4.757149 GTGAAGAGTAACCTCACAAAGCAT 59.243 41.667 0.00 0.00 40.40 3.79
115 116 5.932303 GTGAAGAGTAACCTCACAAAGCATA 59.068 40.000 0.00 0.00 40.40 3.14
116 117 6.595716 GTGAAGAGTAACCTCACAAAGCATAT 59.404 38.462 0.00 0.00 40.40 1.78
117 118 7.119846 GTGAAGAGTAACCTCACAAAGCATATT 59.880 37.037 0.00 0.00 40.40 1.28
118 119 8.318412 TGAAGAGTAACCTCACAAAGCATATTA 58.682 33.333 0.00 0.00 40.40 0.98
119 120 8.723942 AAGAGTAACCTCACAAAGCATATTAG 57.276 34.615 0.00 0.00 40.40 1.73
120 121 7.852263 AGAGTAACCTCACAAAGCATATTAGT 58.148 34.615 0.00 0.00 40.40 2.24
121 122 7.982354 AGAGTAACCTCACAAAGCATATTAGTC 59.018 37.037 0.00 0.00 40.40 2.59
122 123 7.048512 AGTAACCTCACAAAGCATATTAGTCC 58.951 38.462 0.00 0.00 0.00 3.85
123 124 4.781934 ACCTCACAAAGCATATTAGTCCC 58.218 43.478 0.00 0.00 0.00 4.46
124 125 4.227300 ACCTCACAAAGCATATTAGTCCCA 59.773 41.667 0.00 0.00 0.00 4.37
125 126 5.192927 CCTCACAAAGCATATTAGTCCCAA 58.807 41.667 0.00 0.00 0.00 4.12
126 127 5.297776 CCTCACAAAGCATATTAGTCCCAAG 59.702 44.000 0.00 0.00 0.00 3.61
127 128 5.815581 TCACAAAGCATATTAGTCCCAAGT 58.184 37.500 0.00 0.00 0.00 3.16
128 129 6.245408 TCACAAAGCATATTAGTCCCAAGTT 58.755 36.000 0.00 0.00 0.00 2.66
129 130 6.374333 TCACAAAGCATATTAGTCCCAAGTTC 59.626 38.462 0.00 0.00 0.00 3.01
130 131 6.375455 CACAAAGCATATTAGTCCCAAGTTCT 59.625 38.462 0.00 0.00 0.00 3.01
131 132 6.948309 ACAAAGCATATTAGTCCCAAGTTCTT 59.052 34.615 0.00 0.00 0.00 2.52
132 133 7.121315 ACAAAGCATATTAGTCCCAAGTTCTTC 59.879 37.037 0.00 0.00 0.00 2.87
133 134 6.567602 AGCATATTAGTCCCAAGTTCTTCT 57.432 37.500 0.00 0.00 0.00 2.85
134 135 7.676683 AGCATATTAGTCCCAAGTTCTTCTA 57.323 36.000 0.00 0.00 0.00 2.10
135 136 8.268878 AGCATATTAGTCCCAAGTTCTTCTAT 57.731 34.615 0.00 0.00 0.00 1.98
136 137 8.153550 AGCATATTAGTCCCAAGTTCTTCTATG 58.846 37.037 0.00 0.00 0.00 2.23
137 138 7.095017 GCATATTAGTCCCAAGTTCTTCTATGC 60.095 40.741 0.00 0.00 32.59 3.14
138 139 5.755409 TTAGTCCCAAGTTCTTCTATGCA 57.245 39.130 0.00 0.00 0.00 3.96
139 140 3.944087 AGTCCCAAGTTCTTCTATGCAC 58.056 45.455 0.00 0.00 0.00 4.57
140 141 3.327757 AGTCCCAAGTTCTTCTATGCACA 59.672 43.478 0.00 0.00 0.00 4.57
141 142 4.018960 AGTCCCAAGTTCTTCTATGCACAT 60.019 41.667 0.00 0.00 0.00 3.21
142 143 4.095483 GTCCCAAGTTCTTCTATGCACATG 59.905 45.833 0.00 0.00 0.00 3.21
143 144 4.019411 TCCCAAGTTCTTCTATGCACATGA 60.019 41.667 0.00 0.00 0.00 3.07
144 145 4.334759 CCCAAGTTCTTCTATGCACATGAG 59.665 45.833 0.00 0.00 0.00 2.90
145 146 4.201891 CCAAGTTCTTCTATGCACATGAGC 60.202 45.833 8.32 8.32 0.00 4.26
146 147 4.484537 AGTTCTTCTATGCACATGAGCT 57.515 40.909 16.24 4.74 34.99 4.09
147 148 4.190001 AGTTCTTCTATGCACATGAGCTG 58.810 43.478 16.24 6.81 34.99 4.24
148 149 2.558378 TCTTCTATGCACATGAGCTGC 58.442 47.619 16.24 8.20 34.99 5.25
152 153 4.160928 TGCACATGAGCTGCAACA 57.839 50.000 16.24 1.89 41.70 3.33
153 154 1.953772 TGCACATGAGCTGCAACAG 59.046 52.632 16.24 0.00 41.70 3.16
154 155 0.820482 TGCACATGAGCTGCAACAGT 60.820 50.000 16.24 0.19 41.70 3.55
155 156 0.313043 GCACATGAGCTGCAACAGTT 59.687 50.000 7.97 0.00 34.56 3.16
156 157 1.929038 GCACATGAGCTGCAACAGTTG 60.929 52.381 9.12 9.12 34.56 3.16
157 158 1.605232 CACATGAGCTGCAACAGTTGA 59.395 47.619 17.99 1.64 33.43 3.18
158 159 2.033675 CACATGAGCTGCAACAGTTGAA 59.966 45.455 17.99 5.50 33.43 2.69
159 160 2.033801 ACATGAGCTGCAACAGTTGAAC 59.966 45.455 17.99 5.09 33.43 3.18
160 161 0.657312 TGAGCTGCAACAGTTGAACG 59.343 50.000 17.99 5.14 33.43 3.95
161 162 0.937304 GAGCTGCAACAGTTGAACGA 59.063 50.000 17.99 0.00 33.43 3.85
162 163 0.940126 AGCTGCAACAGTTGAACGAG 59.060 50.000 17.99 7.45 33.43 4.18
163 164 0.040958 GCTGCAACAGTTGAACGAGG 60.041 55.000 17.99 0.00 33.43 4.63
164 165 1.299541 CTGCAACAGTTGAACGAGGT 58.700 50.000 17.99 0.00 0.00 3.85
165 166 1.003545 CTGCAACAGTTGAACGAGGTG 60.004 52.381 17.99 4.81 0.00 4.00
166 167 1.295792 GCAACAGTTGAACGAGGTGA 58.704 50.000 17.99 0.00 0.00 4.02
167 168 1.261619 GCAACAGTTGAACGAGGTGAG 59.738 52.381 17.99 1.29 0.00 3.51
168 169 2.821546 CAACAGTTGAACGAGGTGAGA 58.178 47.619 7.61 0.00 0.00 3.27
169 170 2.797156 CAACAGTTGAACGAGGTGAGAG 59.203 50.000 7.61 0.00 0.00 3.20
170 171 2.032620 ACAGTTGAACGAGGTGAGAGT 58.967 47.619 0.00 0.00 0.00 3.24
171 172 2.431057 ACAGTTGAACGAGGTGAGAGTT 59.569 45.455 0.00 0.00 0.00 3.01
172 173 3.118738 ACAGTTGAACGAGGTGAGAGTTT 60.119 43.478 0.00 0.00 0.00 2.66
173 174 3.871594 CAGTTGAACGAGGTGAGAGTTTT 59.128 43.478 0.00 0.00 0.00 2.43
174 175 3.871594 AGTTGAACGAGGTGAGAGTTTTG 59.128 43.478 0.00 0.00 0.00 2.44
175 176 2.210116 TGAACGAGGTGAGAGTTTTGC 58.790 47.619 0.00 0.00 0.00 3.68
176 177 2.210116 GAACGAGGTGAGAGTTTTGCA 58.790 47.619 0.00 0.00 0.00 4.08
177 178 2.550830 ACGAGGTGAGAGTTTTGCAT 57.449 45.000 0.00 0.00 0.00 3.96
178 179 3.678056 ACGAGGTGAGAGTTTTGCATA 57.322 42.857 0.00 0.00 0.00 3.14
179 180 3.326747 ACGAGGTGAGAGTTTTGCATAC 58.673 45.455 0.00 0.00 0.00 2.39
180 181 3.006967 ACGAGGTGAGAGTTTTGCATACT 59.993 43.478 1.92 1.92 0.00 2.12
181 182 4.219944 ACGAGGTGAGAGTTTTGCATACTA 59.780 41.667 2.30 0.00 0.00 1.82
182 183 5.168569 CGAGGTGAGAGTTTTGCATACTAA 58.831 41.667 2.30 0.00 0.00 2.24
183 184 5.289675 CGAGGTGAGAGTTTTGCATACTAAG 59.710 44.000 2.30 0.00 0.00 2.18
184 185 6.115448 AGGTGAGAGTTTTGCATACTAAGT 57.885 37.500 2.30 0.00 0.00 2.24
185 186 6.166982 AGGTGAGAGTTTTGCATACTAAGTC 58.833 40.000 2.30 1.28 0.00 3.01
186 187 5.351740 GGTGAGAGTTTTGCATACTAAGTCC 59.648 44.000 2.30 1.51 0.00 3.85
187 188 6.166982 GTGAGAGTTTTGCATACTAAGTCCT 58.833 40.000 2.30 0.00 0.00 3.85
188 189 6.091441 GTGAGAGTTTTGCATACTAAGTCCTG 59.909 42.308 2.30 0.00 0.00 3.86
189 190 6.115448 AGAGTTTTGCATACTAAGTCCTGT 57.885 37.500 2.30 0.00 0.00 4.00
190 191 5.934625 AGAGTTTTGCATACTAAGTCCTGTG 59.065 40.000 2.30 0.00 0.00 3.66
191 192 5.865085 AGTTTTGCATACTAAGTCCTGTGA 58.135 37.500 0.46 0.00 0.00 3.58
192 193 5.701290 AGTTTTGCATACTAAGTCCTGTGAC 59.299 40.000 0.46 0.00 42.09 3.67
193 194 4.882842 TTGCATACTAAGTCCTGTGACA 57.117 40.909 0.00 0.00 44.33 3.58
194 195 4.882842 TGCATACTAAGTCCTGTGACAA 57.117 40.909 0.00 0.00 44.33 3.18
195 196 5.420725 TGCATACTAAGTCCTGTGACAAT 57.579 39.130 0.00 0.00 44.33 2.71
196 197 5.419542 TGCATACTAAGTCCTGTGACAATC 58.580 41.667 0.00 0.00 44.33 2.67
197 198 5.187772 TGCATACTAAGTCCTGTGACAATCT 59.812 40.000 0.00 0.00 44.33 2.40
198 199 6.109359 GCATACTAAGTCCTGTGACAATCTT 58.891 40.000 0.00 0.00 44.33 2.40
199 200 6.036517 GCATACTAAGTCCTGTGACAATCTTG 59.963 42.308 6.77 0.00 44.33 3.02
200 201 4.319177 ACTAAGTCCTGTGACAATCTTGC 58.681 43.478 6.77 0.00 44.33 4.01
201 202 3.498774 AAGTCCTGTGACAATCTTGCT 57.501 42.857 0.00 0.00 44.33 3.91
202 203 2.775890 AGTCCTGTGACAATCTTGCTG 58.224 47.619 0.00 0.00 44.33 4.41
203 204 2.369860 AGTCCTGTGACAATCTTGCTGA 59.630 45.455 0.00 0.00 44.33 4.26
204 205 3.008813 AGTCCTGTGACAATCTTGCTGAT 59.991 43.478 0.00 0.00 44.33 2.90
205 206 4.223700 AGTCCTGTGACAATCTTGCTGATA 59.776 41.667 0.00 0.00 44.33 2.15
206 207 5.104610 AGTCCTGTGACAATCTTGCTGATAT 60.105 40.000 0.00 0.00 44.33 1.63
207 208 5.007430 GTCCTGTGACAATCTTGCTGATATG 59.993 44.000 0.00 0.00 41.37 1.78
208 209 4.880120 CCTGTGACAATCTTGCTGATATGT 59.120 41.667 0.00 0.00 34.45 2.29
209 210 5.356190 CCTGTGACAATCTTGCTGATATGTT 59.644 40.000 0.00 0.00 34.45 2.71
210 211 6.426980 TGTGACAATCTTGCTGATATGTTC 57.573 37.500 0.00 0.00 34.45 3.18
211 212 5.939296 TGTGACAATCTTGCTGATATGTTCA 59.061 36.000 0.00 0.00 34.45 3.18
212 213 6.128200 TGTGACAATCTTGCTGATATGTTCAC 60.128 38.462 0.00 0.00 34.45 3.18
213 214 6.093219 GTGACAATCTTGCTGATATGTTCACT 59.907 38.462 0.00 0.00 34.45 3.41
214 215 7.278646 GTGACAATCTTGCTGATATGTTCACTA 59.721 37.037 0.00 0.00 34.45 2.74
215 216 7.823799 TGACAATCTTGCTGATATGTTCACTAA 59.176 33.333 0.00 0.00 34.45 2.24
216 217 8.565896 ACAATCTTGCTGATATGTTCACTAAA 57.434 30.769 0.00 0.00 34.45 1.85
217 218 9.182214 ACAATCTTGCTGATATGTTCACTAAAT 57.818 29.630 0.00 0.00 34.45 1.40
218 219 9.661187 CAATCTTGCTGATATGTTCACTAAATC 57.339 33.333 0.00 0.00 34.45 2.17
219 220 8.969260 ATCTTGCTGATATGTTCACTAAATCA 57.031 30.769 0.00 0.00 32.79 2.57
220 221 8.969260 TCTTGCTGATATGTTCACTAAATCAT 57.031 30.769 0.00 0.00 0.00 2.45
221 222 9.399797 TCTTGCTGATATGTTCACTAAATCATT 57.600 29.630 0.00 0.00 0.00 2.57
224 225 9.056005 TGCTGATATGTTCACTAAATCATTACC 57.944 33.333 0.00 0.00 0.00 2.85
225 226 8.223769 GCTGATATGTTCACTAAATCATTACCG 58.776 37.037 0.00 0.00 0.00 4.02
226 227 8.601845 TGATATGTTCACTAAATCATTACCGG 57.398 34.615 0.00 0.00 0.00 5.28
227 228 5.751243 ATGTTCACTAAATCATTACCGGC 57.249 39.130 0.00 0.00 0.00 6.13
228 229 4.580868 TGTTCACTAAATCATTACCGGCA 58.419 39.130 0.00 0.00 0.00 5.69
229 230 5.189928 TGTTCACTAAATCATTACCGGCAT 58.810 37.500 0.00 0.00 0.00 4.40
230 231 5.295787 TGTTCACTAAATCATTACCGGCATC 59.704 40.000 0.00 0.00 0.00 3.91
231 232 5.029807 TCACTAAATCATTACCGGCATCA 57.970 39.130 0.00 0.00 0.00 3.07
232 233 5.432645 TCACTAAATCATTACCGGCATCAA 58.567 37.500 0.00 0.00 0.00 2.57
233 234 5.295787 TCACTAAATCATTACCGGCATCAAC 59.704 40.000 0.00 0.00 0.00 3.18
234 235 4.578928 ACTAAATCATTACCGGCATCAACC 59.421 41.667 0.00 0.00 0.00 3.77
235 236 3.297134 AATCATTACCGGCATCAACCT 57.703 42.857 0.00 0.00 0.00 3.50
236 237 2.799126 TCATTACCGGCATCAACCTT 57.201 45.000 0.00 0.00 0.00 3.50
237 238 3.916359 TCATTACCGGCATCAACCTTA 57.084 42.857 0.00 0.00 0.00 2.69
238 239 3.804036 TCATTACCGGCATCAACCTTAG 58.196 45.455 0.00 0.00 0.00 2.18
239 240 3.452990 TCATTACCGGCATCAACCTTAGA 59.547 43.478 0.00 0.00 0.00 2.10
240 241 3.536956 TTACCGGCATCAACCTTAGAG 57.463 47.619 0.00 0.00 0.00 2.43
241 242 1.568504 ACCGGCATCAACCTTAGAGA 58.431 50.000 0.00 0.00 0.00 3.10
242 243 1.482593 ACCGGCATCAACCTTAGAGAG 59.517 52.381 0.00 0.00 0.00 3.20
251 252 3.425578 CCTTAGAGAGGTGTGTGCG 57.574 57.895 0.00 0.00 40.95 5.34
252 253 0.603569 CCTTAGAGAGGTGTGTGCGT 59.396 55.000 0.00 0.00 40.95 5.24
253 254 1.670087 CCTTAGAGAGGTGTGTGCGTG 60.670 57.143 0.00 0.00 40.95 5.34
254 255 0.317160 TTAGAGAGGTGTGTGCGTGG 59.683 55.000 0.00 0.00 0.00 4.94
255 256 0.538746 TAGAGAGGTGTGTGCGTGGA 60.539 55.000 0.00 0.00 0.00 4.02
256 257 1.069090 GAGAGGTGTGTGCGTGGAA 59.931 57.895 0.00 0.00 0.00 3.53
257 258 0.320771 GAGAGGTGTGTGCGTGGAAT 60.321 55.000 0.00 0.00 0.00 3.01
258 259 0.320771 AGAGGTGTGTGCGTGGAATC 60.321 55.000 0.00 0.00 0.00 2.52
259 260 1.626654 GAGGTGTGTGCGTGGAATCG 61.627 60.000 0.00 0.00 0.00 3.34
260 261 2.677003 GGTGTGTGCGTGGAATCGG 61.677 63.158 0.00 0.00 0.00 4.18
261 262 1.959226 GTGTGTGCGTGGAATCGGT 60.959 57.895 0.00 0.00 0.00 4.69
262 263 0.668096 GTGTGTGCGTGGAATCGGTA 60.668 55.000 0.00 0.00 0.00 4.02
263 264 0.248012 TGTGTGCGTGGAATCGGTAT 59.752 50.000 0.00 0.00 0.00 2.73
264 265 0.650512 GTGTGCGTGGAATCGGTATG 59.349 55.000 0.00 0.00 0.00 2.39
265 266 0.533032 TGTGCGTGGAATCGGTATGA 59.467 50.000 0.00 0.00 0.00 2.15
266 267 1.138069 TGTGCGTGGAATCGGTATGAT 59.862 47.619 0.00 0.00 39.67 2.45
267 268 1.526887 GTGCGTGGAATCGGTATGATG 59.473 52.381 0.00 0.00 37.39 3.07
268 269 1.410882 TGCGTGGAATCGGTATGATGA 59.589 47.619 0.00 0.00 37.39 2.92
269 270 2.061773 GCGTGGAATCGGTATGATGAG 58.938 52.381 0.00 0.00 37.39 2.90
270 271 2.288213 GCGTGGAATCGGTATGATGAGA 60.288 50.000 0.00 0.00 37.39 3.27
271 272 3.309388 CGTGGAATCGGTATGATGAGAC 58.691 50.000 0.00 0.00 37.39 3.36
272 273 3.004839 CGTGGAATCGGTATGATGAGACT 59.995 47.826 0.00 0.00 37.39 3.24
273 274 4.499865 CGTGGAATCGGTATGATGAGACTT 60.500 45.833 0.00 0.00 37.39 3.01
274 275 5.278315 CGTGGAATCGGTATGATGAGACTTA 60.278 44.000 0.00 0.00 37.39 2.24
275 276 6.153067 GTGGAATCGGTATGATGAGACTTAG 58.847 44.000 0.00 0.00 37.39 2.18
276 277 6.016192 GTGGAATCGGTATGATGAGACTTAGA 60.016 42.308 0.00 0.00 37.39 2.10
277 278 6.207614 TGGAATCGGTATGATGAGACTTAGAG 59.792 42.308 0.00 0.00 37.39 2.43
278 279 6.431543 GGAATCGGTATGATGAGACTTAGAGA 59.568 42.308 0.00 0.00 37.39 3.10
279 280 7.361713 GGAATCGGTATGATGAGACTTAGAGAG 60.362 44.444 0.00 0.00 37.39 3.20
280 281 6.176014 TCGGTATGATGAGACTTAGAGAGA 57.824 41.667 0.00 0.00 0.00 3.10
281 282 6.774673 TCGGTATGATGAGACTTAGAGAGAT 58.225 40.000 0.00 0.00 0.00 2.75
282 283 6.652900 TCGGTATGATGAGACTTAGAGAGATG 59.347 42.308 0.00 0.00 0.00 2.90
283 284 6.620678 GGTATGATGAGACTTAGAGAGATGC 58.379 44.000 0.00 0.00 0.00 3.91
284 285 6.208402 GGTATGATGAGACTTAGAGAGATGCA 59.792 42.308 0.00 0.00 0.00 3.96
285 286 6.728089 ATGATGAGACTTAGAGAGATGCAA 57.272 37.500 0.00 0.00 0.00 4.08
286 287 6.146601 TGATGAGACTTAGAGAGATGCAAG 57.853 41.667 0.00 0.00 0.00 4.01
287 288 4.998671 TGAGACTTAGAGAGATGCAAGG 57.001 45.455 0.00 0.00 0.00 3.61
288 289 4.348486 TGAGACTTAGAGAGATGCAAGGT 58.652 43.478 0.00 0.00 0.00 3.50
289 290 4.774726 TGAGACTTAGAGAGATGCAAGGTT 59.225 41.667 0.00 0.00 0.00 3.50
290 291 5.105554 TGAGACTTAGAGAGATGCAAGGTTC 60.106 44.000 0.00 0.00 0.00 3.62
291 292 4.774726 AGACTTAGAGAGATGCAAGGTTCA 59.225 41.667 0.00 0.00 0.00 3.18
292 293 5.083533 ACTTAGAGAGATGCAAGGTTCAG 57.916 43.478 0.00 0.00 0.00 3.02
293 294 4.081198 ACTTAGAGAGATGCAAGGTTCAGG 60.081 45.833 0.00 0.00 0.00 3.86
294 295 1.558756 AGAGAGATGCAAGGTTCAGGG 59.441 52.381 0.00 0.00 0.00 4.45
295 296 0.622665 AGAGATGCAAGGTTCAGGGG 59.377 55.000 0.00 0.00 0.00 4.79
296 297 0.394899 GAGATGCAAGGTTCAGGGGG 60.395 60.000 0.00 0.00 0.00 5.40
297 298 0.846427 AGATGCAAGGTTCAGGGGGA 60.846 55.000 0.00 0.00 0.00 4.81
298 299 0.394899 GATGCAAGGTTCAGGGGGAG 60.395 60.000 0.00 0.00 0.00 4.30
299 300 0.846427 ATGCAAGGTTCAGGGGGAGA 60.846 55.000 0.00 0.00 0.00 3.71
300 301 1.065410 TGCAAGGTTCAGGGGGAGAA 61.065 55.000 0.00 0.00 0.00 2.87
301 302 0.112412 GCAAGGTTCAGGGGGAGAAA 59.888 55.000 0.00 0.00 0.00 2.52
302 303 1.480498 GCAAGGTTCAGGGGGAGAAAA 60.480 52.381 0.00 0.00 0.00 2.29
303 304 2.239400 CAAGGTTCAGGGGGAGAAAAC 58.761 52.381 0.00 0.00 0.00 2.43
304 305 1.834540 AGGTTCAGGGGGAGAAAACT 58.165 50.000 0.00 0.00 0.00 2.66
305 306 2.144450 AGGTTCAGGGGGAGAAAACTT 58.856 47.619 0.00 0.00 0.00 2.66
306 307 2.108425 AGGTTCAGGGGGAGAAAACTTC 59.892 50.000 0.00 0.00 0.00 3.01
307 308 2.158519 GGTTCAGGGGGAGAAAACTTCA 60.159 50.000 0.00 0.00 0.00 3.02
308 309 2.885266 GTTCAGGGGGAGAAAACTTCAC 59.115 50.000 0.00 0.00 0.00 3.18
309 310 2.131854 TCAGGGGGAGAAAACTTCACA 58.868 47.619 0.00 0.00 0.00 3.58
310 311 2.512056 TCAGGGGGAGAAAACTTCACAA 59.488 45.455 0.00 0.00 0.00 3.33
311 312 2.887152 CAGGGGGAGAAAACTTCACAAG 59.113 50.000 0.00 0.00 0.00 3.16
312 313 1.613925 GGGGGAGAAAACTTCACAAGC 59.386 52.381 0.00 0.00 0.00 4.01
313 314 2.587522 GGGGAGAAAACTTCACAAGCT 58.412 47.619 0.00 0.00 0.00 3.74
314 315 2.554462 GGGGAGAAAACTTCACAAGCTC 59.446 50.000 0.00 0.00 0.00 4.09
315 316 2.224314 GGGAGAAAACTTCACAAGCTCG 59.776 50.000 0.00 0.00 0.00 5.03
316 317 2.872858 GGAGAAAACTTCACAAGCTCGT 59.127 45.455 0.00 0.00 0.00 4.18
317 318 3.059529 GGAGAAAACTTCACAAGCTCGTC 60.060 47.826 0.00 0.00 0.00 4.20
318 319 2.540101 AGAAAACTTCACAAGCTCGTCG 59.460 45.455 0.00 0.00 0.00 5.12
319 320 0.582005 AAACTTCACAAGCTCGTCGC 59.418 50.000 0.00 0.00 39.57 5.19
332 333 4.108886 GCTCGTCGCTAAAATCTCAATC 57.891 45.455 0.00 0.00 35.14 2.67
333 334 3.060205 GCTCGTCGCTAAAATCTCAATCC 60.060 47.826 0.00 0.00 35.14 3.01
334 335 4.363999 CTCGTCGCTAAAATCTCAATCCT 58.636 43.478 0.00 0.00 0.00 3.24
335 336 4.112634 TCGTCGCTAAAATCTCAATCCTG 58.887 43.478 0.00 0.00 0.00 3.86
336 337 4.112634 CGTCGCTAAAATCTCAATCCTGA 58.887 43.478 0.00 0.00 0.00 3.86
337 338 4.747108 CGTCGCTAAAATCTCAATCCTGAT 59.253 41.667 0.00 0.00 0.00 2.90
338 339 5.332883 CGTCGCTAAAATCTCAATCCTGATG 60.333 44.000 0.00 0.00 0.00 3.07
339 340 5.755375 GTCGCTAAAATCTCAATCCTGATGA 59.245 40.000 0.00 0.00 0.00 2.92
340 341 6.426328 GTCGCTAAAATCTCAATCCTGATGAT 59.574 38.462 0.00 0.00 34.22 2.45
341 342 6.648310 TCGCTAAAATCTCAATCCTGATGATC 59.352 38.462 0.00 0.00 31.61 2.92
342 343 6.400834 CGCTAAAATCTCAATCCTGATGATCG 60.401 42.308 0.00 0.00 31.61 3.69
343 344 6.648310 GCTAAAATCTCAATCCTGATGATCGA 59.352 38.462 0.00 0.00 31.61 3.59
344 345 7.148606 GCTAAAATCTCAATCCTGATGATCGAG 60.149 40.741 0.00 0.00 36.09 4.04
345 346 5.804944 AATCTCAATCCTGATGATCGAGT 57.195 39.130 0.00 0.00 36.17 4.18
346 347 6.907853 AATCTCAATCCTGATGATCGAGTA 57.092 37.500 0.00 0.00 36.17 2.59
347 348 5.697473 TCTCAATCCTGATGATCGAGTAC 57.303 43.478 0.00 0.00 36.17 2.73
348 349 5.380900 TCTCAATCCTGATGATCGAGTACT 58.619 41.667 0.00 0.00 36.17 2.73
349 350 5.471797 TCTCAATCCTGATGATCGAGTACTC 59.528 44.000 13.18 13.18 36.17 2.59
350 351 5.133221 TCAATCCTGATGATCGAGTACTCA 58.867 41.667 22.37 10.16 31.61 3.41
351 352 5.594317 TCAATCCTGATGATCGAGTACTCAA 59.406 40.000 22.37 4.56 31.61 3.02
352 353 4.902443 TCCTGATGATCGAGTACTCAAC 57.098 45.455 22.37 12.62 0.00 3.18
353 354 4.527944 TCCTGATGATCGAGTACTCAACT 58.472 43.478 22.37 6.14 42.80 3.16
354 355 4.950475 TCCTGATGATCGAGTACTCAACTT 59.050 41.667 22.37 10.45 39.07 2.66
355 356 5.039984 CCTGATGATCGAGTACTCAACTTG 58.960 45.833 22.37 6.07 39.07 3.16
361 362 4.866508 TCGAGTACTCAACTTGATGGTT 57.133 40.909 22.37 0.00 42.69 3.67
362 363 4.556233 TCGAGTACTCAACTTGATGGTTG 58.444 43.478 22.37 1.81 42.69 3.77
368 369 3.855255 TCAACTTGATGGTTGAGTGGA 57.145 42.857 6.03 0.00 46.91 4.02
369 370 4.371624 TCAACTTGATGGTTGAGTGGAT 57.628 40.909 6.03 0.00 46.91 3.41
370 371 4.728772 TCAACTTGATGGTTGAGTGGATT 58.271 39.130 6.03 0.00 46.91 3.01
371 372 4.520111 TCAACTTGATGGTTGAGTGGATTG 59.480 41.667 6.03 0.00 46.91 2.67
628 635 8.210946 CCACCCAAGAACTCATAACTGAATATA 58.789 37.037 0.00 0.00 0.00 0.86
629 636 9.784531 CACCCAAGAACTCATAACTGAATATAT 57.215 33.333 0.00 0.00 0.00 0.86
749 875 3.855689 TTTCTTTACGGAGGGAGTACG 57.144 47.619 0.00 0.00 0.00 3.67
1148 1284 1.007734 GTTGAGAGACGGTGCGACA 60.008 57.895 0.00 0.00 0.00 4.35
1149 1285 1.004277 GTTGAGAGACGGTGCGACAG 61.004 60.000 0.00 0.00 0.00 3.51
1870 3256 8.329502 AGTTCTTTTATAGAATTAGCCCACTGT 58.670 33.333 0.00 0.00 44.39 3.55
2177 3569 2.634815 AAGGAAGCAGCATCGATGAT 57.365 45.000 29.20 20.98 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.487211 AGCCCACATGTCTGCTGA 58.513 55.556 15.88 0.00 31.70 4.26
1 2 3.587095 CAGCCCACATGTCTGCTG 58.413 61.111 24.09 24.09 44.43 4.41
2 3 0.607489 GTTCAGCCCACATGTCTGCT 60.607 55.000 11.86 11.86 33.52 4.24
4 5 0.877071 GTGTTCAGCCCACATGTCTG 59.123 55.000 0.00 0.34 33.00 3.51
6 7 1.577328 CGGTGTTCAGCCCACATGTC 61.577 60.000 0.00 0.00 34.46 3.06
7 8 1.600636 CGGTGTTCAGCCCACATGT 60.601 57.895 0.00 0.00 34.46 3.21
8 9 0.321210 TACGGTGTTCAGCCCACATG 60.321 55.000 0.00 0.00 34.46 3.21
9 10 0.321298 GTACGGTGTTCAGCCCACAT 60.321 55.000 0.00 0.00 34.46 3.21
10 11 1.070105 GTACGGTGTTCAGCCCACA 59.930 57.895 0.00 0.00 34.46 4.17
11 12 0.533308 TTGTACGGTGTTCAGCCCAC 60.533 55.000 0.00 0.00 0.00 4.61
12 13 0.180642 TTTGTACGGTGTTCAGCCCA 59.819 50.000 0.00 0.00 0.00 5.36
13 14 0.589708 GTTTGTACGGTGTTCAGCCC 59.410 55.000 0.00 0.00 0.00 5.19
14 15 0.589708 GGTTTGTACGGTGTTCAGCC 59.410 55.000 0.00 0.00 0.00 4.85
15 16 0.589708 GGGTTTGTACGGTGTTCAGC 59.410 55.000 0.00 0.00 0.00 4.26
16 17 1.202722 AGGGGTTTGTACGGTGTTCAG 60.203 52.381 0.00 0.00 0.00 3.02
17 18 0.838608 AGGGGTTTGTACGGTGTTCA 59.161 50.000 0.00 0.00 0.00 3.18
18 19 2.416747 GTAGGGGTTTGTACGGTGTTC 58.583 52.381 0.00 0.00 0.00 3.18
19 20 1.072173 GGTAGGGGTTTGTACGGTGTT 59.928 52.381 0.00 0.00 0.00 3.32
20 21 0.686789 GGTAGGGGTTTGTACGGTGT 59.313 55.000 0.00 0.00 0.00 4.16
21 22 0.686224 TGGTAGGGGTTTGTACGGTG 59.314 55.000 0.00 0.00 0.00 4.94
22 23 1.660242 ATGGTAGGGGTTTGTACGGT 58.340 50.000 0.00 0.00 0.00 4.83
23 24 2.793288 AATGGTAGGGGTTTGTACGG 57.207 50.000 0.00 0.00 0.00 4.02
24 25 5.286267 AGATAATGGTAGGGGTTTGTACG 57.714 43.478 0.00 0.00 0.00 3.67
25 26 7.970102 TCATAGATAATGGTAGGGGTTTGTAC 58.030 38.462 0.00 0.00 36.15 2.90
26 27 8.570038 TTCATAGATAATGGTAGGGGTTTGTA 57.430 34.615 0.00 0.00 36.15 2.41
27 28 7.349859 TCTTCATAGATAATGGTAGGGGTTTGT 59.650 37.037 0.00 0.00 36.15 2.83
28 29 7.745717 TCTTCATAGATAATGGTAGGGGTTTG 58.254 38.462 0.00 0.00 36.15 2.93
29 30 7.947782 TCTTCATAGATAATGGTAGGGGTTT 57.052 36.000 0.00 0.00 36.15 3.27
30 31 9.629649 TTATCTTCATAGATAATGGTAGGGGTT 57.370 33.333 4.02 0.00 44.53 4.11
42 43 8.152898 ACACAAGCAGCATTATCTTCATAGATA 58.847 33.333 0.00 0.00 41.38 1.98
43 44 6.996879 ACACAAGCAGCATTATCTTCATAGAT 59.003 34.615 0.00 0.00 43.51 1.98
44 45 6.351711 ACACAAGCAGCATTATCTTCATAGA 58.648 36.000 0.00 0.00 34.21 1.98
45 46 6.615264 ACACAAGCAGCATTATCTTCATAG 57.385 37.500 0.00 0.00 0.00 2.23
46 47 6.678655 GCAACACAAGCAGCATTATCTTCATA 60.679 38.462 0.00 0.00 0.00 2.15
47 48 5.647589 CAACACAAGCAGCATTATCTTCAT 58.352 37.500 0.00 0.00 0.00 2.57
48 49 4.616604 GCAACACAAGCAGCATTATCTTCA 60.617 41.667 0.00 0.00 0.00 3.02
49 50 3.855950 GCAACACAAGCAGCATTATCTTC 59.144 43.478 0.00 0.00 0.00 2.87
50 51 3.256383 TGCAACACAAGCAGCATTATCTT 59.744 39.130 0.00 0.00 37.02 2.40
51 52 2.821378 TGCAACACAAGCAGCATTATCT 59.179 40.909 0.00 0.00 37.02 1.98
52 53 2.919229 GTGCAACACAAGCAGCATTATC 59.081 45.455 0.00 0.00 43.63 1.75
53 54 2.296752 TGTGCAACACAAGCAGCATTAT 59.703 40.909 0.00 0.00 45.67 1.28
54 55 1.680207 TGTGCAACACAAGCAGCATTA 59.320 42.857 0.00 0.00 45.67 1.90
55 56 0.460722 TGTGCAACACAAGCAGCATT 59.539 45.000 0.00 0.00 45.67 3.56
56 57 2.117257 TGTGCAACACAAGCAGCAT 58.883 47.368 0.00 0.00 45.67 3.79
57 58 3.600843 TGTGCAACACAAGCAGCA 58.399 50.000 0.00 0.00 45.67 4.41
63 64 4.799594 CCATCTGGACTTGTGCAACACAA 61.800 47.826 12.21 12.21 42.78 3.33
64 65 3.329261 CCATCTGGACTTGTGCAACACA 61.329 50.000 0.00 0.00 42.78 3.72
65 66 1.267806 CCATCTGGACTTGTGCAACAC 59.732 52.381 0.00 0.00 42.78 3.32
66 67 1.608055 CCATCTGGACTTGTGCAACA 58.392 50.000 0.00 0.00 41.63 3.33
67 68 0.883833 CCCATCTGGACTTGTGCAAC 59.116 55.000 0.00 0.00 37.39 4.17
68 69 0.478072 ACCCATCTGGACTTGTGCAA 59.522 50.000 0.00 0.00 37.39 4.08
69 70 0.478072 AACCCATCTGGACTTGTGCA 59.522 50.000 0.00 0.00 37.39 4.57
70 71 2.489938 TAACCCATCTGGACTTGTGC 57.510 50.000 0.00 0.00 37.39 4.57
71 72 3.691118 CACATAACCCATCTGGACTTGTG 59.309 47.826 0.00 3.10 37.39 3.33
72 73 3.587061 TCACATAACCCATCTGGACTTGT 59.413 43.478 0.00 0.00 37.39 3.16
73 74 4.220693 TCACATAACCCATCTGGACTTG 57.779 45.455 0.00 0.00 37.39 3.16
74 75 4.536090 TCTTCACATAACCCATCTGGACTT 59.464 41.667 0.00 0.00 37.39 3.01
75 76 4.104086 TCTTCACATAACCCATCTGGACT 58.896 43.478 0.00 0.00 37.39 3.85
76 77 4.080863 ACTCTTCACATAACCCATCTGGAC 60.081 45.833 0.00 0.00 37.39 4.02
77 78 4.104086 ACTCTTCACATAACCCATCTGGA 58.896 43.478 0.00 0.00 37.39 3.86
78 79 4.494091 ACTCTTCACATAACCCATCTGG 57.506 45.455 0.00 0.00 41.37 3.86
79 80 5.817816 GGTTACTCTTCACATAACCCATCTG 59.182 44.000 1.65 0.00 41.31 2.90
80 81 5.726793 AGGTTACTCTTCACATAACCCATCT 59.273 40.000 8.44 0.00 46.10 2.90
81 82 5.990668 AGGTTACTCTTCACATAACCCATC 58.009 41.667 8.44 0.00 46.10 3.51
82 83 5.487488 TGAGGTTACTCTTCACATAACCCAT 59.513 40.000 8.44 0.00 46.10 4.00
83 84 4.841813 TGAGGTTACTCTTCACATAACCCA 59.158 41.667 8.44 4.74 46.10 4.51
84 85 5.416271 TGAGGTTACTCTTCACATAACCC 57.584 43.478 8.44 2.62 46.10 4.11
92 93 4.415881 TGCTTTGTGAGGTTACTCTTCA 57.584 40.909 0.00 0.00 44.29 3.02
93 94 7.617041 AATATGCTTTGTGAGGTTACTCTTC 57.383 36.000 0.00 0.00 44.29 2.87
94 95 8.322091 ACTAATATGCTTTGTGAGGTTACTCTT 58.678 33.333 0.00 0.00 44.29 2.85
95 96 7.852263 ACTAATATGCTTTGTGAGGTTACTCT 58.148 34.615 0.00 0.00 44.29 3.24
96 97 7.224949 GGACTAATATGCTTTGTGAGGTTACTC 59.775 40.741 0.00 0.00 44.23 2.59
97 98 7.048512 GGACTAATATGCTTTGTGAGGTTACT 58.951 38.462 0.00 0.00 0.00 2.24
98 99 6.260271 GGGACTAATATGCTTTGTGAGGTTAC 59.740 42.308 0.00 0.00 0.00 2.50
99 100 6.069905 TGGGACTAATATGCTTTGTGAGGTTA 60.070 38.462 0.00 0.00 0.00 2.85
100 101 5.193679 GGGACTAATATGCTTTGTGAGGTT 58.806 41.667 0.00 0.00 0.00 3.50
101 102 4.227300 TGGGACTAATATGCTTTGTGAGGT 59.773 41.667 0.00 0.00 0.00 3.85
102 103 4.780815 TGGGACTAATATGCTTTGTGAGG 58.219 43.478 0.00 0.00 0.00 3.86
103 104 5.882557 ACTTGGGACTAATATGCTTTGTGAG 59.117 40.000 0.00 0.00 0.00 3.51
104 105 5.815581 ACTTGGGACTAATATGCTTTGTGA 58.184 37.500 0.00 0.00 0.00 3.58
105 106 6.375455 AGAACTTGGGACTAATATGCTTTGTG 59.625 38.462 0.00 0.00 0.00 3.33
106 107 6.485171 AGAACTTGGGACTAATATGCTTTGT 58.515 36.000 0.00 0.00 0.00 2.83
107 108 7.337942 AGAAGAACTTGGGACTAATATGCTTTG 59.662 37.037 0.00 0.00 0.00 2.77
108 109 7.406104 AGAAGAACTTGGGACTAATATGCTTT 58.594 34.615 0.00 0.00 0.00 3.51
109 110 6.963322 AGAAGAACTTGGGACTAATATGCTT 58.037 36.000 0.00 0.00 0.00 3.91
110 111 6.567602 AGAAGAACTTGGGACTAATATGCT 57.432 37.500 0.00 0.00 0.00 3.79
111 112 7.095017 GCATAGAAGAACTTGGGACTAATATGC 60.095 40.741 0.00 0.00 34.45 3.14
112 113 7.933577 TGCATAGAAGAACTTGGGACTAATATG 59.066 37.037 0.00 0.00 0.00 1.78
113 114 7.934120 GTGCATAGAAGAACTTGGGACTAATAT 59.066 37.037 0.00 0.00 0.00 1.28
114 115 7.093068 TGTGCATAGAAGAACTTGGGACTAATA 60.093 37.037 0.00 0.00 0.00 0.98
115 116 6.116126 GTGCATAGAAGAACTTGGGACTAAT 58.884 40.000 0.00 0.00 0.00 1.73
116 117 5.012664 TGTGCATAGAAGAACTTGGGACTAA 59.987 40.000 0.00 0.00 0.00 2.24
117 118 4.530553 TGTGCATAGAAGAACTTGGGACTA 59.469 41.667 0.00 0.00 0.00 2.59
118 119 3.327757 TGTGCATAGAAGAACTTGGGACT 59.672 43.478 0.00 0.00 0.00 3.85
119 120 3.674997 TGTGCATAGAAGAACTTGGGAC 58.325 45.455 0.00 0.00 0.00 4.46
120 121 4.019411 TCATGTGCATAGAAGAACTTGGGA 60.019 41.667 0.00 0.00 0.00 4.37
121 122 4.264253 TCATGTGCATAGAAGAACTTGGG 58.736 43.478 0.00 0.00 0.00 4.12
122 123 4.201891 GCTCATGTGCATAGAAGAACTTGG 60.202 45.833 14.66 0.00 0.00 3.61
123 124 4.634883 AGCTCATGTGCATAGAAGAACTTG 59.365 41.667 20.92 0.00 34.99 3.16
124 125 4.634883 CAGCTCATGTGCATAGAAGAACTT 59.365 41.667 20.92 0.00 34.99 2.66
125 126 4.190001 CAGCTCATGTGCATAGAAGAACT 58.810 43.478 20.92 0.00 34.99 3.01
126 127 3.242673 GCAGCTCATGTGCATAGAAGAAC 60.243 47.826 20.92 0.00 40.86 3.01
127 128 2.941064 GCAGCTCATGTGCATAGAAGAA 59.059 45.455 20.92 0.00 40.86 2.52
128 129 2.093341 TGCAGCTCATGTGCATAGAAGA 60.093 45.455 20.92 0.00 45.96 2.87
129 130 2.285977 TGCAGCTCATGTGCATAGAAG 58.714 47.619 20.92 5.51 45.96 2.85
130 131 2.406596 TGCAGCTCATGTGCATAGAA 57.593 45.000 20.92 3.31 45.96 2.10
136 137 0.313043 AACTGTTGCAGCTCATGTGC 59.687 50.000 11.79 11.79 41.59 4.57
137 138 1.605232 TCAACTGTTGCAGCTCATGTG 59.395 47.619 15.52 0.00 34.37 3.21
138 139 1.971481 TCAACTGTTGCAGCTCATGT 58.029 45.000 15.52 0.00 34.37 3.21
139 140 2.658285 GTTCAACTGTTGCAGCTCATG 58.342 47.619 15.52 0.00 34.37 3.07
140 141 1.265095 CGTTCAACTGTTGCAGCTCAT 59.735 47.619 15.52 0.00 34.37 2.90
141 142 0.657312 CGTTCAACTGTTGCAGCTCA 59.343 50.000 15.52 0.00 34.37 4.26
142 143 0.937304 TCGTTCAACTGTTGCAGCTC 59.063 50.000 15.52 3.62 34.37 4.09
143 144 0.940126 CTCGTTCAACTGTTGCAGCT 59.060 50.000 15.52 0.00 34.37 4.24
144 145 0.040958 CCTCGTTCAACTGTTGCAGC 60.041 55.000 15.52 7.10 34.37 5.25
145 146 1.003545 CACCTCGTTCAACTGTTGCAG 60.004 52.381 15.52 9.06 37.52 4.41
146 147 1.013596 CACCTCGTTCAACTGTTGCA 58.986 50.000 15.52 1.76 0.00 4.08
147 148 1.261619 CTCACCTCGTTCAACTGTTGC 59.738 52.381 15.52 2.10 0.00 4.17
148 149 2.797156 CTCTCACCTCGTTCAACTGTTG 59.203 50.000 14.24 14.24 0.00 3.33
149 150 2.431057 ACTCTCACCTCGTTCAACTGTT 59.569 45.455 0.00 0.00 0.00 3.16
150 151 2.032620 ACTCTCACCTCGTTCAACTGT 58.967 47.619 0.00 0.00 0.00 3.55
151 152 2.802787 ACTCTCACCTCGTTCAACTG 57.197 50.000 0.00 0.00 0.00 3.16
152 153 3.821421 AAACTCTCACCTCGTTCAACT 57.179 42.857 0.00 0.00 0.00 3.16
153 154 3.546218 GCAAAACTCTCACCTCGTTCAAC 60.546 47.826 0.00 0.00 0.00 3.18
154 155 2.612212 GCAAAACTCTCACCTCGTTCAA 59.388 45.455 0.00 0.00 0.00 2.69
155 156 2.210116 GCAAAACTCTCACCTCGTTCA 58.790 47.619 0.00 0.00 0.00 3.18
156 157 2.210116 TGCAAAACTCTCACCTCGTTC 58.790 47.619 0.00 0.00 0.00 3.95
157 158 2.325583 TGCAAAACTCTCACCTCGTT 57.674 45.000 0.00 0.00 0.00 3.85
158 159 2.550830 ATGCAAAACTCTCACCTCGT 57.449 45.000 0.00 0.00 0.00 4.18
159 160 3.589988 AGTATGCAAAACTCTCACCTCG 58.410 45.455 0.00 0.00 0.00 4.63
160 161 6.166982 ACTTAGTATGCAAAACTCTCACCTC 58.833 40.000 8.24 0.00 0.00 3.85
161 162 6.115448 ACTTAGTATGCAAAACTCTCACCT 57.885 37.500 8.24 0.00 0.00 4.00
162 163 5.351740 GGACTTAGTATGCAAAACTCTCACC 59.648 44.000 8.24 5.93 0.00 4.02
163 164 6.091441 CAGGACTTAGTATGCAAAACTCTCAC 59.909 42.308 8.24 1.39 0.00 3.51
164 165 6.166279 CAGGACTTAGTATGCAAAACTCTCA 58.834 40.000 8.24 0.00 0.00 3.27
165 166 6.091441 CACAGGACTTAGTATGCAAAACTCTC 59.909 42.308 8.24 3.32 0.00 3.20
166 167 5.934625 CACAGGACTTAGTATGCAAAACTCT 59.065 40.000 8.24 0.00 0.00 3.24
167 168 5.932303 TCACAGGACTTAGTATGCAAAACTC 59.068 40.000 8.24 0.00 0.00 3.01
168 169 5.701290 GTCACAGGACTTAGTATGCAAAACT 59.299 40.000 9.71 9.71 40.99 2.66
169 170 5.468746 TGTCACAGGACTTAGTATGCAAAAC 59.531 40.000 0.00 0.00 44.61 2.43
170 171 5.616270 TGTCACAGGACTTAGTATGCAAAA 58.384 37.500 0.00 0.00 44.61 2.44
171 172 5.222079 TGTCACAGGACTTAGTATGCAAA 57.778 39.130 0.00 0.00 44.61 3.68
172 173 4.882842 TGTCACAGGACTTAGTATGCAA 57.117 40.909 0.00 0.00 44.61 4.08
173 174 4.882842 TTGTCACAGGACTTAGTATGCA 57.117 40.909 0.00 0.00 44.61 3.96
174 175 5.665459 AGATTGTCACAGGACTTAGTATGC 58.335 41.667 0.00 0.00 44.61 3.14
175 176 6.036517 GCAAGATTGTCACAGGACTTAGTATG 59.963 42.308 0.00 0.00 44.61 2.39
176 177 6.070538 AGCAAGATTGTCACAGGACTTAGTAT 60.071 38.462 0.00 0.00 44.61 2.12
177 178 5.246203 AGCAAGATTGTCACAGGACTTAGTA 59.754 40.000 0.00 0.00 44.61 1.82
178 179 4.040952 AGCAAGATTGTCACAGGACTTAGT 59.959 41.667 0.00 0.00 44.61 2.24
179 180 4.391216 CAGCAAGATTGTCACAGGACTTAG 59.609 45.833 0.00 0.00 44.61 2.18
180 181 4.040339 TCAGCAAGATTGTCACAGGACTTA 59.960 41.667 0.00 0.00 44.61 2.24
181 182 3.144506 CAGCAAGATTGTCACAGGACTT 58.855 45.455 0.00 0.00 44.61 3.01
182 183 2.369860 TCAGCAAGATTGTCACAGGACT 59.630 45.455 0.00 0.00 44.61 3.85
183 184 2.771089 TCAGCAAGATTGTCACAGGAC 58.229 47.619 0.00 0.00 44.57 3.85
184 185 3.708403 ATCAGCAAGATTGTCACAGGA 57.292 42.857 0.00 0.00 31.20 3.86
185 186 4.880120 ACATATCAGCAAGATTGTCACAGG 59.120 41.667 0.00 0.00 38.19 4.00
186 187 6.093082 TGAACATATCAGCAAGATTGTCACAG 59.907 38.462 0.00 0.00 38.19 3.66
187 188 5.939296 TGAACATATCAGCAAGATTGTCACA 59.061 36.000 0.00 4.66 38.19 3.58
188 189 6.093219 AGTGAACATATCAGCAAGATTGTCAC 59.907 38.462 0.00 6.57 39.19 3.67
189 190 6.175471 AGTGAACATATCAGCAAGATTGTCA 58.825 36.000 0.00 0.00 39.19 3.58
190 191 6.674694 AGTGAACATATCAGCAAGATTGTC 57.325 37.500 0.00 0.00 39.19 3.18
191 192 8.565896 TTTAGTGAACATATCAGCAAGATTGT 57.434 30.769 0.00 0.67 39.19 2.71
192 193 9.661187 GATTTAGTGAACATATCAGCAAGATTG 57.339 33.333 0.00 0.00 39.19 2.67
193 194 9.399797 TGATTTAGTGAACATATCAGCAAGATT 57.600 29.630 0.00 0.00 39.19 2.40
194 195 8.969260 TGATTTAGTGAACATATCAGCAAGAT 57.031 30.769 0.00 0.00 39.19 2.40
195 196 8.969260 ATGATTTAGTGAACATATCAGCAAGA 57.031 30.769 0.00 0.00 39.19 3.02
198 199 9.056005 GGTAATGATTTAGTGAACATATCAGCA 57.944 33.333 0.00 0.00 39.19 4.41
199 200 8.223769 CGGTAATGATTTAGTGAACATATCAGC 58.776 37.037 0.00 0.00 39.19 4.26
200 201 8.712363 CCGGTAATGATTTAGTGAACATATCAG 58.288 37.037 0.00 0.00 39.19 2.90
201 202 7.172532 GCCGGTAATGATTTAGTGAACATATCA 59.827 37.037 1.90 0.00 35.05 2.15
202 203 7.172532 TGCCGGTAATGATTTAGTGAACATATC 59.827 37.037 1.90 0.00 0.00 1.63
203 204 6.995686 TGCCGGTAATGATTTAGTGAACATAT 59.004 34.615 1.90 0.00 0.00 1.78
204 205 6.350103 TGCCGGTAATGATTTAGTGAACATA 58.650 36.000 1.90 0.00 0.00 2.29
205 206 5.189928 TGCCGGTAATGATTTAGTGAACAT 58.810 37.500 1.90 0.00 0.00 2.71
206 207 4.580868 TGCCGGTAATGATTTAGTGAACA 58.419 39.130 1.90 0.00 0.00 3.18
207 208 5.295787 TGATGCCGGTAATGATTTAGTGAAC 59.704 40.000 1.90 0.00 0.00 3.18
208 209 5.432645 TGATGCCGGTAATGATTTAGTGAA 58.567 37.500 1.90 0.00 0.00 3.18
209 210 5.029807 TGATGCCGGTAATGATTTAGTGA 57.970 39.130 1.90 0.00 0.00 3.41
210 211 5.505654 GGTTGATGCCGGTAATGATTTAGTG 60.506 44.000 1.90 0.00 0.00 2.74
211 212 4.578928 GGTTGATGCCGGTAATGATTTAGT 59.421 41.667 1.90 0.00 0.00 2.24
212 213 4.821805 AGGTTGATGCCGGTAATGATTTAG 59.178 41.667 1.90 0.00 0.00 1.85
213 214 4.787551 AGGTTGATGCCGGTAATGATTTA 58.212 39.130 1.90 0.00 0.00 1.40
214 215 3.631250 AGGTTGATGCCGGTAATGATTT 58.369 40.909 1.90 0.00 0.00 2.17
215 216 3.297134 AGGTTGATGCCGGTAATGATT 57.703 42.857 1.90 0.00 0.00 2.57
216 217 3.297134 AAGGTTGATGCCGGTAATGAT 57.703 42.857 1.90 0.00 0.00 2.45
217 218 2.799126 AAGGTTGATGCCGGTAATGA 57.201 45.000 1.90 0.00 0.00 2.57
218 219 3.804036 TCTAAGGTTGATGCCGGTAATG 58.196 45.455 1.90 0.00 0.00 1.90
219 220 3.709653 TCTCTAAGGTTGATGCCGGTAAT 59.290 43.478 1.90 0.00 0.00 1.89
220 221 3.101437 TCTCTAAGGTTGATGCCGGTAA 58.899 45.455 1.90 0.00 0.00 2.85
221 222 2.693591 CTCTCTAAGGTTGATGCCGGTA 59.306 50.000 1.90 0.00 0.00 4.02
222 223 1.482593 CTCTCTAAGGTTGATGCCGGT 59.517 52.381 1.90 0.00 0.00 5.28
223 224 1.202580 CCTCTCTAAGGTTGATGCCGG 60.203 57.143 0.00 0.00 40.67 6.13
224 225 2.231215 CCTCTCTAAGGTTGATGCCG 57.769 55.000 0.00 0.00 40.67 5.69
234 235 1.670087 CCACGCACACACCTCTCTAAG 60.670 57.143 0.00 0.00 0.00 2.18
235 236 0.317160 CCACGCACACACCTCTCTAA 59.683 55.000 0.00 0.00 0.00 2.10
236 237 0.538746 TCCACGCACACACCTCTCTA 60.539 55.000 0.00 0.00 0.00 2.43
237 238 1.399744 TTCCACGCACACACCTCTCT 61.400 55.000 0.00 0.00 0.00 3.10
238 239 0.320771 ATTCCACGCACACACCTCTC 60.321 55.000 0.00 0.00 0.00 3.20
239 240 0.320771 GATTCCACGCACACACCTCT 60.321 55.000 0.00 0.00 0.00 3.69
240 241 1.626654 CGATTCCACGCACACACCTC 61.627 60.000 0.00 0.00 0.00 3.85
241 242 1.667830 CGATTCCACGCACACACCT 60.668 57.895 0.00 0.00 0.00 4.00
242 243 2.677003 CCGATTCCACGCACACACC 61.677 63.158 0.00 0.00 0.00 4.16
243 244 0.668096 TACCGATTCCACGCACACAC 60.668 55.000 0.00 0.00 0.00 3.82
244 245 0.248012 ATACCGATTCCACGCACACA 59.752 50.000 0.00 0.00 0.00 3.72
245 246 0.650512 CATACCGATTCCACGCACAC 59.349 55.000 0.00 0.00 0.00 3.82
246 247 0.533032 TCATACCGATTCCACGCACA 59.467 50.000 0.00 0.00 0.00 4.57
247 248 1.526887 CATCATACCGATTCCACGCAC 59.473 52.381 0.00 0.00 29.21 5.34
248 249 1.410882 TCATCATACCGATTCCACGCA 59.589 47.619 0.00 0.00 29.21 5.24
249 250 2.061773 CTCATCATACCGATTCCACGC 58.938 52.381 0.00 0.00 29.21 5.34
250 251 3.004839 AGTCTCATCATACCGATTCCACG 59.995 47.826 0.00 0.00 29.21 4.94
251 252 4.592485 AGTCTCATCATACCGATTCCAC 57.408 45.455 0.00 0.00 29.21 4.02
252 253 6.068670 TCTAAGTCTCATCATACCGATTCCA 58.931 40.000 0.00 0.00 29.21 3.53
253 254 6.431543 TCTCTAAGTCTCATCATACCGATTCC 59.568 42.308 0.00 0.00 29.21 3.01
254 255 7.389330 TCTCTCTAAGTCTCATCATACCGATTC 59.611 40.741 0.00 0.00 29.21 2.52
255 256 7.227873 TCTCTCTAAGTCTCATCATACCGATT 58.772 38.462 0.00 0.00 29.21 3.34
256 257 6.774673 TCTCTCTAAGTCTCATCATACCGAT 58.225 40.000 0.00 0.00 33.27 4.18
257 258 6.176014 TCTCTCTAAGTCTCATCATACCGA 57.824 41.667 0.00 0.00 0.00 4.69
258 259 6.622679 GCATCTCTCTAAGTCTCATCATACCG 60.623 46.154 0.00 0.00 0.00 4.02
259 260 6.208402 TGCATCTCTCTAAGTCTCATCATACC 59.792 42.308 0.00 0.00 0.00 2.73
260 261 7.213216 TGCATCTCTCTAAGTCTCATCATAC 57.787 40.000 0.00 0.00 0.00 2.39
261 262 7.039853 CCTTGCATCTCTCTAAGTCTCATCATA 60.040 40.741 0.00 0.00 0.00 2.15
262 263 6.239373 CCTTGCATCTCTCTAAGTCTCATCAT 60.239 42.308 0.00 0.00 0.00 2.45
263 264 5.068855 CCTTGCATCTCTCTAAGTCTCATCA 59.931 44.000 0.00 0.00 0.00 3.07
264 265 5.068987 ACCTTGCATCTCTCTAAGTCTCATC 59.931 44.000 0.00 0.00 0.00 2.92
265 266 4.961730 ACCTTGCATCTCTCTAAGTCTCAT 59.038 41.667 0.00 0.00 0.00 2.90
266 267 4.348486 ACCTTGCATCTCTCTAAGTCTCA 58.652 43.478 0.00 0.00 0.00 3.27
267 268 5.105554 TGAACCTTGCATCTCTCTAAGTCTC 60.106 44.000 0.00 0.00 0.00 3.36
268 269 4.774726 TGAACCTTGCATCTCTCTAAGTCT 59.225 41.667 0.00 0.00 0.00 3.24
269 270 5.078411 TGAACCTTGCATCTCTCTAAGTC 57.922 43.478 0.00 0.00 0.00 3.01
270 271 4.081198 CCTGAACCTTGCATCTCTCTAAGT 60.081 45.833 0.00 0.00 0.00 2.24
271 272 4.440880 CCTGAACCTTGCATCTCTCTAAG 58.559 47.826 0.00 0.00 0.00 2.18
272 273 3.198635 CCCTGAACCTTGCATCTCTCTAA 59.801 47.826 0.00 0.00 0.00 2.10
273 274 2.768527 CCCTGAACCTTGCATCTCTCTA 59.231 50.000 0.00 0.00 0.00 2.43
274 275 1.558756 CCCTGAACCTTGCATCTCTCT 59.441 52.381 0.00 0.00 0.00 3.10
275 276 1.407989 CCCCTGAACCTTGCATCTCTC 60.408 57.143 0.00 0.00 0.00 3.20
276 277 0.622665 CCCCTGAACCTTGCATCTCT 59.377 55.000 0.00 0.00 0.00 3.10
277 278 0.394899 CCCCCTGAACCTTGCATCTC 60.395 60.000 0.00 0.00 0.00 2.75
278 279 0.846427 TCCCCCTGAACCTTGCATCT 60.846 55.000 0.00 0.00 0.00 2.90
279 280 0.394899 CTCCCCCTGAACCTTGCATC 60.395 60.000 0.00 0.00 0.00 3.91
280 281 0.846427 TCTCCCCCTGAACCTTGCAT 60.846 55.000 0.00 0.00 0.00 3.96
281 282 1.065410 TTCTCCCCCTGAACCTTGCA 61.065 55.000 0.00 0.00 0.00 4.08
282 283 0.112412 TTTCTCCCCCTGAACCTTGC 59.888 55.000 0.00 0.00 0.00 4.01
283 284 2.158460 AGTTTTCTCCCCCTGAACCTTG 60.158 50.000 0.00 0.00 0.00 3.61
284 285 2.144450 AGTTTTCTCCCCCTGAACCTT 58.856 47.619 0.00 0.00 0.00 3.50
285 286 1.834540 AGTTTTCTCCCCCTGAACCT 58.165 50.000 0.00 0.00 0.00 3.50
286 287 2.158519 TGAAGTTTTCTCCCCCTGAACC 60.159 50.000 0.00 0.00 0.00 3.62
287 288 2.885266 GTGAAGTTTTCTCCCCCTGAAC 59.115 50.000 0.00 0.00 0.00 3.18
288 289 2.512056 TGTGAAGTTTTCTCCCCCTGAA 59.488 45.455 0.00 0.00 0.00 3.02
289 290 2.131854 TGTGAAGTTTTCTCCCCCTGA 58.868 47.619 0.00 0.00 0.00 3.86
290 291 2.656947 TGTGAAGTTTTCTCCCCCTG 57.343 50.000 0.00 0.00 0.00 4.45
291 292 2.753168 GCTTGTGAAGTTTTCTCCCCCT 60.753 50.000 0.00 0.00 0.00 4.79
292 293 1.613925 GCTTGTGAAGTTTTCTCCCCC 59.386 52.381 0.00 0.00 0.00 5.40
293 294 2.554462 GAGCTTGTGAAGTTTTCTCCCC 59.446 50.000 0.00 0.00 0.00 4.81
294 295 2.224314 CGAGCTTGTGAAGTTTTCTCCC 59.776 50.000 0.00 0.00 0.00 4.30
295 296 2.872858 ACGAGCTTGTGAAGTTTTCTCC 59.127 45.455 5.59 0.00 0.00 3.71
296 297 3.362110 CGACGAGCTTGTGAAGTTTTCTC 60.362 47.826 12.53 0.00 0.00 2.87
297 298 2.540101 CGACGAGCTTGTGAAGTTTTCT 59.460 45.455 12.53 0.00 0.00 2.52
298 299 2.892613 CGACGAGCTTGTGAAGTTTTC 58.107 47.619 12.53 0.00 0.00 2.29
299 300 1.003866 GCGACGAGCTTGTGAAGTTTT 60.004 47.619 12.53 0.00 44.04 2.43
300 301 0.582005 GCGACGAGCTTGTGAAGTTT 59.418 50.000 12.53 0.00 44.04 2.66
301 302 2.226269 GCGACGAGCTTGTGAAGTT 58.774 52.632 12.53 0.00 44.04 2.66
302 303 3.938112 GCGACGAGCTTGTGAAGT 58.062 55.556 12.53 0.00 44.04 3.01
312 313 4.208047 CAGGATTGAGATTTTAGCGACGAG 59.792 45.833 0.00 0.00 0.00 4.18
313 314 4.112634 CAGGATTGAGATTTTAGCGACGA 58.887 43.478 0.00 0.00 0.00 4.20
314 315 4.112634 TCAGGATTGAGATTTTAGCGACG 58.887 43.478 0.00 0.00 0.00 5.12
315 316 5.755375 TCATCAGGATTGAGATTTTAGCGAC 59.245 40.000 0.00 0.00 36.61 5.19
316 317 5.917462 TCATCAGGATTGAGATTTTAGCGA 58.083 37.500 0.00 0.00 36.61 4.93
317 318 6.400834 CGATCATCAGGATTGAGATTTTAGCG 60.401 42.308 0.00 0.00 39.43 4.26
318 319 6.648310 TCGATCATCAGGATTGAGATTTTAGC 59.352 38.462 0.00 0.00 40.75 3.09
327 328 5.133221 TGAGTACTCGATCATCAGGATTGA 58.867 41.667 17.85 0.00 42.90 2.57
328 329 5.444663 TGAGTACTCGATCATCAGGATTG 57.555 43.478 17.85 0.00 36.00 2.67
329 330 5.596361 AGTTGAGTACTCGATCATCAGGATT 59.404 40.000 15.96 0.00 30.75 3.01
330 331 5.136828 AGTTGAGTACTCGATCATCAGGAT 58.863 41.667 15.96 0.00 32.74 3.24
331 332 4.527944 AGTTGAGTACTCGATCATCAGGA 58.472 43.478 15.96 0.00 28.23 3.86
332 333 4.909696 AGTTGAGTACTCGATCATCAGG 57.090 45.455 15.96 0.00 28.23 3.86
333 334 5.884771 TCAAGTTGAGTACTCGATCATCAG 58.115 41.667 15.96 4.35 35.54 2.90
334 335 5.897377 TCAAGTTGAGTACTCGATCATCA 57.103 39.130 15.96 0.00 35.54 3.07
335 336 5.689514 CCATCAAGTTGAGTACTCGATCATC 59.310 44.000 15.96 3.42 35.54 2.92
336 337 5.127845 ACCATCAAGTTGAGTACTCGATCAT 59.872 40.000 15.96 3.20 35.54 2.45
337 338 4.462834 ACCATCAAGTTGAGTACTCGATCA 59.537 41.667 15.96 0.00 35.54 2.92
338 339 5.000012 ACCATCAAGTTGAGTACTCGATC 58.000 43.478 15.96 9.73 35.54 3.69
339 340 5.407407 AACCATCAAGTTGAGTACTCGAT 57.593 39.130 15.96 9.81 35.54 3.59
340 341 4.866508 AACCATCAAGTTGAGTACTCGA 57.133 40.909 17.85 13.62 35.54 4.04
349 350 4.279169 ACAATCCACTCAACCATCAAGTTG 59.721 41.667 0.00 0.00 46.90 3.16
350 351 4.473444 ACAATCCACTCAACCATCAAGTT 58.527 39.130 0.00 0.00 0.00 2.66
351 352 4.104383 ACAATCCACTCAACCATCAAGT 57.896 40.909 0.00 0.00 0.00 3.16
352 353 5.248640 AGTACAATCCACTCAACCATCAAG 58.751 41.667 0.00 0.00 0.00 3.02
353 354 5.241403 AGTACAATCCACTCAACCATCAA 57.759 39.130 0.00 0.00 0.00 2.57
354 355 4.908601 AGTACAATCCACTCAACCATCA 57.091 40.909 0.00 0.00 0.00 3.07
355 356 5.978814 ACTAGTACAATCCACTCAACCATC 58.021 41.667 0.00 0.00 0.00 3.51
356 357 6.895756 TCTACTAGTACAATCCACTCAACCAT 59.104 38.462 0.00 0.00 0.00 3.55
357 358 6.250711 TCTACTAGTACAATCCACTCAACCA 58.749 40.000 0.00 0.00 0.00 3.67
358 359 6.770746 TCTACTAGTACAATCCACTCAACC 57.229 41.667 0.00 0.00 0.00 3.77
359 360 7.259161 CCTTCTACTAGTACAATCCACTCAAC 58.741 42.308 0.00 0.00 0.00 3.18
360 361 6.127423 GCCTTCTACTAGTACAATCCACTCAA 60.127 42.308 0.00 0.00 0.00 3.02
361 362 5.360144 GCCTTCTACTAGTACAATCCACTCA 59.640 44.000 0.00 0.00 0.00 3.41
362 363 5.221283 GGCCTTCTACTAGTACAATCCACTC 60.221 48.000 0.00 0.00 0.00 3.51
363 364 4.650131 GGCCTTCTACTAGTACAATCCACT 59.350 45.833 0.00 0.00 0.00 4.00
364 365 4.202233 GGGCCTTCTACTAGTACAATCCAC 60.202 50.000 0.84 0.00 0.00 4.02
365 366 3.965347 GGGCCTTCTACTAGTACAATCCA 59.035 47.826 0.84 0.00 0.00 3.41
366 367 3.005578 CGGGCCTTCTACTAGTACAATCC 59.994 52.174 0.84 0.41 0.00 3.01
367 368 3.635836 ACGGGCCTTCTACTAGTACAATC 59.364 47.826 0.84 0.00 0.00 2.67
368 369 3.383825 CACGGGCCTTCTACTAGTACAAT 59.616 47.826 0.84 0.00 0.00 2.71
369 370 2.756760 CACGGGCCTTCTACTAGTACAA 59.243 50.000 0.84 0.00 0.00 2.41
370 371 2.372264 CACGGGCCTTCTACTAGTACA 58.628 52.381 0.84 0.00 0.00 2.90
371 372 1.066757 GCACGGGCCTTCTACTAGTAC 59.933 57.143 0.00 0.00 0.00 2.73
749 875 1.795768 TGGATGCGTGAAGTTGACTC 58.204 50.000 0.00 0.00 0.00 3.36
1148 1284 2.594592 GGTGACAGGTTTGCCGCT 60.595 61.111 0.00 0.00 40.50 5.52
1149 1285 4.025401 CGGTGACAGGTTTGCCGC 62.025 66.667 0.00 0.00 40.50 6.53
1200 1336 3.637273 GGGGCGAGGTTGACCACT 61.637 66.667 2.56 0.00 39.59 4.00
1235 1371 2.319841 GCATCTGCCATCGCGCATA 61.320 57.895 8.75 0.00 38.30 3.14
1323 1461 2.409870 CGGGAAGGTGATGCTTGCC 61.410 63.158 0.00 0.00 37.65 4.52
1534 2916 2.542595 GTGCCACGTGTACTATATTGCC 59.457 50.000 15.65 0.00 0.00 4.52
2174 3566 4.940654 TGACAATCGTATTTCCTTGCATCA 59.059 37.500 0.00 0.00 0.00 3.07
2177 3569 4.323417 AGTGACAATCGTATTTCCTTGCA 58.677 39.130 0.00 0.00 0.00 4.08
2289 3681 8.877864 TTCTATTTGGTGTAATTCAGGAACAT 57.122 30.769 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.