Multiple sequence alignment - TraesCS1D01G393000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G393000 chr1D 100.000 8852 0 0 1 8852 462747354 462738503 0.000000e+00 16347
1 TraesCS1D01G393000 chr1A 94.256 2803 96 36 967 3751 554534929 554532174 0.000000e+00 4224
2 TraesCS1D01G393000 chr1A 94.330 2328 93 20 4043 6345 554531632 554529319 0.000000e+00 3531
3 TraesCS1D01G393000 chr1A 88.996 1763 100 31 6940 8670 554528432 554526732 0.000000e+00 2095
4 TraesCS1D01G393000 chr1A 95.887 462 11 4 6494 6948 554529077 554528617 0.000000e+00 741
5 TraesCS1D01G393000 chr1A 95.017 301 7 1 3603 3895 554532174 554531874 4.840000e-127 466
6 TraesCS1D01G393000 chr1A 96.795 156 4 1 3889 4044 554531846 554531692 8.820000e-65 259
7 TraesCS1D01G393000 chr1A 87.349 166 14 4 685 845 554535515 554535352 5.460000e-42 183
8 TraesCS1D01G393000 chr1A 98.649 74 1 0 6347 6420 554529151 554529078 2.010000e-26 132
9 TraesCS1D01G393000 chr1A 91.228 57 1 3 1 57 554537467 554537415 3.430000e-09 75
10 TraesCS1D01G393000 chr1B 91.036 2153 116 35 6426 8546 637827550 637825443 0.000000e+00 2835
11 TraesCS1D01G393000 chr1B 87.977 1888 155 37 2036 3885 637832090 637830237 0.000000e+00 2163
12 TraesCS1D01G393000 chr1B 89.320 1470 83 31 579 2038 637833550 637832145 0.000000e+00 1777
13 TraesCS1D01G393000 chr1B 91.494 870 60 6 4043 4912 637829991 637829136 0.000000e+00 1184
14 TraesCS1D01G393000 chr1B 95.573 384 17 0 5803 6186 637828091 637827708 4.540000e-172 616
15 TraesCS1D01G393000 chr1B 89.167 480 37 8 4947 5415 637829137 637828662 1.280000e-162 584
16 TraesCS1D01G393000 chr1B 91.667 276 19 3 7109 7384 637820924 637820653 6.490000e-101 379
17 TraesCS1D01G393000 chr1B 84.709 327 32 8 7437 7746 637820644 637820319 2.400000e-80 311
18 TraesCS1D01G393000 chr1B 85.950 242 30 2 5550 5787 637828390 637828149 1.140000e-63 255
19 TraesCS1D01G393000 chr1B 89.091 165 16 2 8689 8852 7524762 7524599 4.190000e-48 204
20 TraesCS1D01G393000 chr1B 89.024 164 16 2 8689 8851 670960726 670960888 1.510000e-47 202
21 TraesCS1D01G393000 chr1B 88.439 173 11 1 6218 6390 637827708 637827545 5.420000e-47 200
22 TraesCS1D01G393000 chr1B 87.879 165 18 2 8689 8852 672331336 672331499 9.070000e-45 193
23 TraesCS1D01G393000 chr4B 87.461 1284 113 28 850 2112 7101588 7102844 0.000000e+00 1435
24 TraesCS1D01G393000 chr7A 87.154 1300 102 31 850 2118 730331472 730330207 0.000000e+00 1415
25 TraesCS1D01G393000 chr7A 86.923 1300 105 32 850 2118 730378741 730377476 0.000000e+00 1399
26 TraesCS1D01G393000 chr7A 89.760 625 39 10 1322 1934 68795502 68796113 0.000000e+00 776
27 TraesCS1D01G393000 chr4A 86.950 1295 113 34 850 2112 670765098 670766368 0.000000e+00 1404
28 TraesCS1D01G393000 chr2B 86.646 1303 113 34 850 2118 692693063 692691788 0.000000e+00 1386
29 TraesCS1D01G393000 chr2B 87.805 164 18 2 8689 8851 72723837 72723675 3.260000e-44 191
30 TraesCS1D01G393000 chr5A 87.683 1161 105 20 992 2118 437594020 437592864 0.000000e+00 1317
31 TraesCS1D01G393000 chr5A 80.733 737 106 23 2872 3589 675743396 675742677 7.820000e-150 542
32 TraesCS1D01G393000 chr5A 82.270 141 7 7 850 990 437449225 437449347 1.220000e-18 106
33 TraesCS1D01G393000 chr3A 87.950 888 77 14 1241 2112 21307083 21307956 0.000000e+00 1020
34 TraesCS1D01G393000 chr2A 87.696 894 79 15 1241 2118 22312384 22311506 0.000000e+00 1013
35 TraesCS1D01G393000 chr2A 87.277 896 79 17 1241 2118 746144546 746143668 0.000000e+00 990
36 TraesCS1D01G393000 chr6A 86.327 490 43 10 1241 1720 9595118 9595593 6.130000e-141 512
37 TraesCS1D01G393000 chr6A 83.983 231 37 0 4130 4360 609841663 609841893 1.160000e-53 222
38 TraesCS1D01G393000 chr6A 87.273 110 14 0 3008 3117 609841272 609841381 9.330000e-25 126
39 TraesCS1D01G393000 chr6A 76.518 247 37 13 2558 2804 609840894 609841119 2.020000e-21 115
40 TraesCS1D01G393000 chr6B 82.558 258 43 2 4130 4386 706470296 706470552 8.940000e-55 226
41 TraesCS1D01G393000 chr6B 82.558 258 43 2 4130 4386 706584679 706584935 8.940000e-55 226
42 TraesCS1D01G393000 chr6B 89.091 165 16 2 8689 8852 712256586 712256423 4.190000e-48 204
43 TraesCS1D01G393000 chr6B 77.578 223 30 12 2558 2780 706583919 706584121 5.620000e-22 117
44 TraesCS1D01G393000 chr6B 85.088 114 15 2 3008 3120 706469905 706470017 2.020000e-21 115
45 TraesCS1D01G393000 chr6B 85.088 114 15 2 3008 3120 706584288 706584400 2.020000e-21 115
46 TraesCS1D01G393000 chr2D 90.123 162 16 0 8691 8852 569258613 569258774 2.500000e-50 211
47 TraesCS1D01G393000 chr2D 89.506 162 17 0 8691 8852 58990324 58990485 1.160000e-48 206
48 TraesCS1D01G393000 chr7B 87.879 165 18 2 8689 8852 579992735 579992572 9.070000e-45 193
49 TraesCS1D01G393000 chr7B 91.964 112 9 0 974 1085 306216582 306216471 3.310000e-34 158
50 TraesCS1D01G393000 chr3D 87.654 162 20 0 8691 8852 10377931 10378092 1.170000e-43 189
51 TraesCS1D01G393000 chr3B 82.286 175 29 2 7188 7361 11081461 11081634 5.540000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G393000 chr1D 462738503 462747354 8851 True 16347.000000 16347 100.000000 1 8852 1 chr1D.!!$R1 8851
1 TraesCS1D01G393000 chr1A 554526732 554537467 10735 True 1300.666667 4224 93.611889 1 8670 9 chr1A.!!$R1 8669
2 TraesCS1D01G393000 chr1B 637825443 637833550 8107 True 1201.750000 2835 89.869500 579 8546 8 chr1B.!!$R3 7967
3 TraesCS1D01G393000 chr1B 637820319 637820924 605 True 345.000000 379 88.188000 7109 7746 2 chr1B.!!$R2 637
4 TraesCS1D01G393000 chr4B 7101588 7102844 1256 False 1435.000000 1435 87.461000 850 2112 1 chr4B.!!$F1 1262
5 TraesCS1D01G393000 chr7A 730330207 730331472 1265 True 1415.000000 1415 87.154000 850 2118 1 chr7A.!!$R1 1268
6 TraesCS1D01G393000 chr7A 730377476 730378741 1265 True 1399.000000 1399 86.923000 850 2118 1 chr7A.!!$R2 1268
7 TraesCS1D01G393000 chr7A 68795502 68796113 611 False 776.000000 776 89.760000 1322 1934 1 chr7A.!!$F1 612
8 TraesCS1D01G393000 chr4A 670765098 670766368 1270 False 1404.000000 1404 86.950000 850 2112 1 chr4A.!!$F1 1262
9 TraesCS1D01G393000 chr2B 692691788 692693063 1275 True 1386.000000 1386 86.646000 850 2118 1 chr2B.!!$R2 1268
10 TraesCS1D01G393000 chr5A 437592864 437594020 1156 True 1317.000000 1317 87.683000 992 2118 1 chr5A.!!$R1 1126
11 TraesCS1D01G393000 chr5A 675742677 675743396 719 True 542.000000 542 80.733000 2872 3589 1 chr5A.!!$R2 717
12 TraesCS1D01G393000 chr3A 21307083 21307956 873 False 1020.000000 1020 87.950000 1241 2112 1 chr3A.!!$F1 871
13 TraesCS1D01G393000 chr2A 22311506 22312384 878 True 1013.000000 1013 87.696000 1241 2118 1 chr2A.!!$R1 877
14 TraesCS1D01G393000 chr2A 746143668 746144546 878 True 990.000000 990 87.277000 1241 2118 1 chr2A.!!$R2 877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 277 0.095245 AAATGAATCGTCGTGCGCTG 59.905 50.000 9.73 0.40 41.07 5.18 F
308 383 0.107508 CCTGGAGCCACAATCGTCAT 60.108 55.000 0.00 0.00 0.00 3.06 F
770 2060 0.250166 CCGTTTCTTCCCCACGAAGT 60.250 55.000 0.00 0.00 46.97 3.01 F
774 2067 0.765135 TTCTTCCCCACGAAGTCCCA 60.765 55.000 0.00 0.00 46.97 4.37 F
2324 4074 1.248785 TGTCTGTACAGTCGGGGAGC 61.249 60.000 21.99 5.05 0.00 4.70 F
2731 4481 0.468400 AGGGTCAGCCGGAGAGTATC 60.468 60.000 5.05 0.00 34.97 2.24 F
3062 4819 1.683938 CCAGCCAATCAGGATCTTGCA 60.684 52.381 0.00 0.00 41.22 4.08 F
3719 5517 5.931532 ACTAGCGATCTTTGTTGACAATTG 58.068 37.500 3.24 3.24 35.55 2.32 F
4318 6368 3.002862 GTGACTATTTCGCAAACACACCA 59.997 43.478 0.00 0.00 34.56 4.17 F
6049 8369 3.031736 TGTTAGTATCAGAGGTCCTGCC 58.968 50.000 0.00 0.00 42.62 4.85 F
6295 8618 1.068472 AGTCGTTCTGCAGTTCCTACG 60.068 52.381 14.67 15.57 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 2914 0.814457 TTCAAACAAGCAACAGCGGT 59.186 45.000 0.00 0.00 0.00 5.68 R
2198 3940 2.286418 GCCAGTTTGTCTGTCAGTTTCG 60.286 50.000 0.00 0.00 42.19 3.46 R
2483 4233 0.106719 AGGGGGAATACAACATGGCG 60.107 55.000 0.00 0.00 0.00 5.69 R
2696 4446 4.843728 TGACCCTCTAACAAGCATAAAGG 58.156 43.478 0.00 0.00 0.00 3.11 R
3963 5952 0.397535 CAAATGCCACCTAGCCCCAT 60.398 55.000 0.00 0.00 0.00 4.00 R
3965 5954 1.758122 CCAAATGCCACCTAGCCCC 60.758 63.158 0.00 0.00 0.00 5.80 R
4040 6029 2.811431 TGAAAACACAGTAATCAGGGCG 59.189 45.455 0.00 0.00 0.00 6.13 R
5416 7478 4.226427 TCTAAGGCTAGTCAACCTACGA 57.774 45.455 0.00 0.00 34.31 3.43 R
6132 8452 2.281484 TTGCTCGGTGAACCCAGC 60.281 61.111 11.69 11.69 37.67 4.85 R
7719 10477 3.437049 GCTTCGAAAGTTGCCTAATCTGT 59.563 43.478 0.00 0.00 0.00 3.41 R
8055 10827 1.303643 CAGCAGAAAGGTGTCCCCC 60.304 63.158 0.00 0.00 40.80 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 130 6.176183 CCTAGTGTCTTTCTTTCATGTGGAT 58.824 40.000 0.00 0.00 0.00 3.41
87 134 4.935205 TGTCTTTCTTTCATGTGGATACCG 59.065 41.667 0.00 0.00 0.00 4.02
89 136 6.103997 GTCTTTCTTTCATGTGGATACCGTA 58.896 40.000 0.00 0.00 0.00 4.02
93 140 9.104965 CTTTCTTTCATGTGGATACCGTATTTA 57.895 33.333 0.00 0.00 0.00 1.40
94 141 9.621629 TTTCTTTCATGTGGATACCGTATTTAT 57.378 29.630 0.00 0.00 0.00 1.40
95 142 9.621629 TTCTTTCATGTGGATACCGTATTTATT 57.378 29.630 0.00 0.00 0.00 1.40
96 143 9.621629 TCTTTCATGTGGATACCGTATTTATTT 57.378 29.630 0.00 0.00 0.00 1.40
110 157 9.361315 ACCGTATTTATTTATTTTTGTGAAGGC 57.639 29.630 0.00 0.00 0.00 4.35
112 159 8.813282 CGTATTTATTTATTTTTGTGAAGGCCC 58.187 33.333 0.00 0.00 0.00 5.80
115 162 1.551452 TATTTTTGTGAAGGCCCCGG 58.449 50.000 0.00 0.00 0.00 5.73
120 167 2.190578 GTGAAGGCCCCGGATCTG 59.809 66.667 0.73 0.00 0.00 2.90
122 169 1.002403 TGAAGGCCCCGGATCTGTA 59.998 57.895 0.73 0.00 0.00 2.74
125 172 0.474184 AAGGCCCCGGATCTGTAATG 59.526 55.000 0.73 0.00 0.00 1.90
127 174 0.472471 GGCCCCGGATCTGTAATGAA 59.528 55.000 0.73 0.00 0.00 2.57
151 216 8.879427 AAAGTACTCCCAACATAATAAAAGCT 57.121 30.769 0.00 0.00 0.00 3.74
152 217 8.507524 AAGTACTCCCAACATAATAAAAGCTC 57.492 34.615 0.00 0.00 0.00 4.09
173 238 2.554032 CACATTGAGGTCCTTGAACCAC 59.446 50.000 0.00 0.00 42.12 4.16
175 240 3.650942 ACATTGAGGTCCTTGAACCACTA 59.349 43.478 0.00 0.00 42.12 2.74
184 249 2.546789 CCTTGAACCACTAAACGACCAC 59.453 50.000 0.00 0.00 0.00 4.16
188 253 2.712057 ACCACTAAACGACCACTACG 57.288 50.000 0.00 0.00 0.00 3.51
189 254 2.229792 ACCACTAAACGACCACTACGA 58.770 47.619 0.00 0.00 34.70 3.43
192 257 2.030893 CACTAAACGACCACTACGACCA 60.031 50.000 0.00 0.00 34.70 4.02
193 258 2.622942 ACTAAACGACCACTACGACCAA 59.377 45.455 0.00 0.00 34.70 3.67
194 259 2.600470 AAACGACCACTACGACCAAA 57.400 45.000 0.00 0.00 34.70 3.28
196 261 2.825861 ACGACCACTACGACCAAAAT 57.174 45.000 0.00 0.00 34.70 1.82
197 262 2.409975 ACGACCACTACGACCAAAATG 58.590 47.619 0.00 0.00 34.70 2.32
199 264 3.061322 CGACCACTACGACCAAAATGAA 58.939 45.455 0.00 0.00 0.00 2.57
200 265 3.682858 CGACCACTACGACCAAAATGAAT 59.317 43.478 0.00 0.00 0.00 2.57
201 266 4.201685 CGACCACTACGACCAAAATGAATC 60.202 45.833 0.00 0.00 0.00 2.52
202 267 3.682858 ACCACTACGACCAAAATGAATCG 59.317 43.478 0.00 0.00 40.39 3.34
207 272 2.757896 CGACCAAAATGAATCGTCGTG 58.242 47.619 0.00 0.00 40.96 4.35
208 273 2.505866 GACCAAAATGAATCGTCGTGC 58.494 47.619 0.00 0.00 0.00 5.34
211 276 0.796312 AAAATGAATCGTCGTGCGCT 59.204 45.000 9.73 0.00 41.07 5.92
212 277 0.095245 AAATGAATCGTCGTGCGCTG 59.905 50.000 9.73 0.40 41.07 5.18
213 278 2.296692 AATGAATCGTCGTGCGCTGC 62.297 55.000 9.73 0.00 41.07 5.25
214 279 3.181967 GAATCGTCGTGCGCTGCT 61.182 61.111 9.73 0.00 41.07 4.24
235 310 0.179073 CCTCACGGGGTCATCATGAC 60.179 60.000 9.53 9.53 46.23 3.06
249 324 3.893326 TCATGACCTTGTCGATGACAT 57.107 42.857 0.00 0.00 42.40 3.06
253 328 4.001618 TGACCTTGTCGATGACATTTGA 57.998 40.909 0.00 0.00 42.40 2.69
254 329 4.384940 TGACCTTGTCGATGACATTTGAA 58.615 39.130 0.00 0.00 42.40 2.69
265 340 6.817396 CGATGACATTTGAAAAGTCTTCGTA 58.183 36.000 27.95 7.68 46.15 3.43
272 347 4.725556 TGAAAAGTCTTCGTACACATGC 57.274 40.909 0.00 0.00 0.00 4.06
273 348 4.123506 TGAAAAGTCTTCGTACACATGCA 58.876 39.130 0.00 0.00 0.00 3.96
274 349 4.754618 TGAAAAGTCTTCGTACACATGCAT 59.245 37.500 0.00 0.00 0.00 3.96
277 352 4.983671 AGTCTTCGTACACATGCATCTA 57.016 40.909 0.00 0.00 0.00 1.98
278 353 5.324784 AGTCTTCGTACACATGCATCTAA 57.675 39.130 0.00 0.00 0.00 2.10
279 354 5.907207 AGTCTTCGTACACATGCATCTAAT 58.093 37.500 0.00 0.00 0.00 1.73
286 361 3.198068 ACACATGCATCTAATGACCGAC 58.802 45.455 0.00 0.00 0.00 4.79
287 362 3.197265 CACATGCATCTAATGACCGACA 58.803 45.455 0.00 0.00 0.00 4.35
291 366 1.139058 GCATCTAATGACCGACACCCT 59.861 52.381 0.00 0.00 0.00 4.34
292 367 2.826428 CATCTAATGACCGACACCCTG 58.174 52.381 0.00 0.00 0.00 4.45
298 373 4.954118 ACCGACACCCTGGAGCCA 62.954 66.667 0.00 0.00 0.00 4.75
301 376 2.836154 GACACCCTGGAGCCACAA 59.164 61.111 0.00 0.00 0.00 3.33
306 381 1.450312 CCCTGGAGCCACAATCGTC 60.450 63.158 0.00 0.00 0.00 4.20
307 382 1.296392 CCTGGAGCCACAATCGTCA 59.704 57.895 0.00 0.00 0.00 4.35
308 383 0.107508 CCTGGAGCCACAATCGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
313 388 2.536365 GAGCCACAATCGTCATCGTTA 58.464 47.619 0.00 0.00 38.33 3.18
319 394 2.669434 ACAATCGTCATCGTTAAACCCG 59.331 45.455 0.00 0.00 38.33 5.28
320 395 2.660189 ATCGTCATCGTTAAACCCGT 57.340 45.000 0.00 0.00 38.33 5.28
321 396 1.700523 TCGTCATCGTTAAACCCGTG 58.299 50.000 0.00 0.00 38.33 4.94
324 399 1.461897 GTCATCGTTAAACCCGTGTGG 59.538 52.381 0.00 0.00 41.37 4.17
325 400 1.343789 TCATCGTTAAACCCGTGTGGA 59.656 47.619 0.00 0.00 37.49 4.02
326 401 2.027929 TCATCGTTAAACCCGTGTGGAT 60.028 45.455 0.00 0.00 37.49 3.41
327 402 3.195182 TCATCGTTAAACCCGTGTGGATA 59.805 43.478 0.00 0.00 37.49 2.59
328 403 2.958213 TCGTTAAACCCGTGTGGATAC 58.042 47.619 0.00 0.00 37.49 2.24
355 430 3.243134 CGCATGGCATCATATGTTGTCAA 60.243 43.478 21.47 8.50 33.70 3.18
357 432 4.284485 CATGGCATCATATGTTGTCAACG 58.716 43.478 21.47 13.54 33.70 4.10
385 460 1.278413 GGAGCGAGAAACCCTAACCTT 59.722 52.381 0.00 0.00 0.00 3.50
393 468 2.287977 AACCCTAACCTTGTTGCCTC 57.712 50.000 0.00 0.00 0.00 4.70
397 472 2.224769 CCCTAACCTTGTTGCCTCAAGA 60.225 50.000 16.19 0.56 45.11 3.02
402 477 2.092429 ACCTTGTTGCCTCAAGAAGACA 60.092 45.455 15.26 0.00 44.16 3.41
409 484 3.405831 TGCCTCAAGAAGACAACATGAG 58.594 45.455 0.00 0.00 37.77 2.90
415 490 6.346919 CCTCAAGAAGACAACATGAGTTTACG 60.347 42.308 0.00 0.00 36.61 3.18
416 491 4.992381 AGAAGACAACATGAGTTTACGC 57.008 40.909 0.00 0.00 35.28 4.42
418 493 4.449068 AGAAGACAACATGAGTTTACGCTG 59.551 41.667 0.00 0.00 35.28 5.18
419 494 3.067106 AGACAACATGAGTTTACGCTGG 58.933 45.455 0.00 0.00 35.28 4.85
426 779 0.802607 GAGTTTACGCTGGAGCTCCG 60.803 60.000 27.43 21.69 39.43 4.63
428 781 1.077089 GTTTACGCTGGAGCTCCGTC 61.077 60.000 27.43 19.40 39.43 4.79
438 791 2.278661 GCTCCGTCGAATCCGTCC 60.279 66.667 0.00 0.00 37.05 4.79
441 794 0.587285 CTCCGTCGAATCCGTCCTAG 59.413 60.000 0.00 0.00 37.05 3.02
459 812 0.617413 AGTGGACATGCTCAAGGAGG 59.383 55.000 0.00 0.00 0.00 4.30
462 815 1.487976 TGGACATGCTCAAGGAGGATC 59.512 52.381 0.00 0.00 38.63 3.36
467 820 1.493861 TGCTCAAGGAGGATCAGAGG 58.506 55.000 0.00 0.00 36.25 3.69
487 840 0.737715 CCGAAAGACCAGCTCGAAGG 60.738 60.000 0.00 0.00 34.52 3.46
495 848 1.803519 CAGCTCGAAGGTGAGACGC 60.804 63.158 7.92 0.00 45.98 5.19
498 851 1.137825 CTCGAAGGTGAGACGCCTC 59.862 63.158 4.32 0.00 44.35 4.70
502 855 0.460987 GAAGGTGAGACGCCTCCATG 60.461 60.000 4.32 0.00 44.35 3.66
503 856 1.903877 AAGGTGAGACGCCTCCATGG 61.904 60.000 4.97 4.97 44.35 3.66
508 861 2.512515 GACGCCTCCATGGTCTGC 60.513 66.667 12.58 11.80 38.35 4.26
509 862 3.005539 ACGCCTCCATGGTCTGCT 61.006 61.111 12.58 1.15 38.35 4.24
510 863 2.513204 CGCCTCCATGGTCTGCTG 60.513 66.667 12.58 6.10 38.35 4.41
511 864 2.827642 GCCTCCATGGTCTGCTGC 60.828 66.667 12.58 3.09 38.35 5.25
517 874 1.147824 CATGGTCTGCTGCCCCTAG 59.852 63.158 0.00 0.00 0.00 3.02
521 878 0.978146 GGTCTGCTGCCCCTAGAAGA 60.978 60.000 0.00 0.00 29.65 2.87
614 1201 2.475111 TCGTCAGTTCGAAGCATGTTTC 59.525 45.455 11.93 11.93 36.89 2.78
670 1264 5.424121 AGTTCAAAATTCGAACCTCACAG 57.576 39.130 0.00 0.00 43.07 3.66
677 1271 3.050275 GAACCTCACAGGCGGCAC 61.050 66.667 13.08 0.00 39.63 5.01
678 1272 3.537206 GAACCTCACAGGCGGCACT 62.537 63.158 13.08 0.00 39.63 4.40
679 1273 3.832237 AACCTCACAGGCGGCACTG 62.832 63.158 13.08 14.35 39.63 3.66
693 1287 1.639298 GCACTGCGGCAGTAAGAAGG 61.639 60.000 32.93 20.91 43.43 3.46
694 1288 1.376037 ACTGCGGCAGTAAGAAGGC 60.376 57.895 32.61 0.00 43.46 4.35
770 2060 0.250166 CCGTTTCTTCCCCACGAAGT 60.250 55.000 0.00 0.00 46.97 3.01
774 2067 0.765135 TTCTTCCCCACGAAGTCCCA 60.765 55.000 0.00 0.00 46.97 4.37
779 2072 2.297895 CCCACGAAGTCCCATCCCA 61.298 63.158 0.00 0.00 41.61 4.37
790 2083 2.038438 CATCCCATCCCCTCCCCA 60.038 66.667 0.00 0.00 0.00 4.96
811 2104 2.291930 ACTCCAAACCCAAACCAACTCA 60.292 45.455 0.00 0.00 0.00 3.41
820 2113 1.649390 AAACCAACTCAACGCGCACA 61.649 50.000 5.73 0.00 0.00 4.57
821 2114 2.052237 CCAACTCAACGCGCACAC 60.052 61.111 5.73 0.00 0.00 3.82
822 2115 2.423517 CAACTCAACGCGCACACG 60.424 61.111 5.73 0.00 44.07 4.49
864 2157 2.513204 CCACCATCCGCAGCTCAG 60.513 66.667 0.00 0.00 0.00 3.35
908 2201 3.126225 AGTCGGCGTCGTCTCCTC 61.126 66.667 10.18 0.00 37.69 3.71
909 2202 3.126225 GTCGGCGTCGTCTCCTCT 61.126 66.667 10.18 0.00 37.69 3.69
910 2203 2.818714 TCGGCGTCGTCTCCTCTC 60.819 66.667 10.18 0.00 37.69 3.20
911 2204 3.878519 CGGCGTCGTCTCCTCTCC 61.879 72.222 0.00 0.00 0.00 3.71
912 2205 3.519930 GGCGTCGTCTCCTCTCCC 61.520 72.222 0.00 0.00 0.00 4.30
913 2206 3.519930 GCGTCGTCTCCTCTCCCC 61.520 72.222 0.00 0.00 0.00 4.81
914 2207 2.829458 CGTCGTCTCCTCTCCCCC 60.829 72.222 0.00 0.00 0.00 5.40
915 2208 2.829458 GTCGTCTCCTCTCCCCCG 60.829 72.222 0.00 0.00 0.00 5.73
1211 2816 1.667154 ATCTCGCGAGCTTGCTGGTA 61.667 55.000 30.97 11.10 0.00 3.25
1232 2852 4.105733 CTGCGCGATTTGGCTGCA 62.106 61.111 12.10 0.00 39.07 4.41
1293 2913 1.303309 GCGCTGGCAGATAGATTTGT 58.697 50.000 20.86 0.00 39.62 2.83
1294 2914 2.483876 GCGCTGGCAGATAGATTTGTA 58.516 47.619 20.86 0.00 39.62 2.41
1375 3004 5.475719 TGACCAGTAATTGTGTAGTGCTAC 58.524 41.667 2.60 2.60 36.63 3.58
1391 3044 3.894782 GCTACGAAGCTAGGTACTACC 57.105 52.381 0.00 0.00 45.85 3.18
1401 3054 6.573712 AGCTAGGTACTACCACTACTACTT 57.426 41.667 8.01 0.00 41.95 2.24
1437 3101 2.358322 ACTAGGGGGTGTGTTGTTTG 57.642 50.000 0.00 0.00 0.00 2.93
1459 3124 5.148502 TGGGTAATGAGAATCCTCCTAGTC 58.851 45.833 0.00 0.00 38.66 2.59
1462 3127 5.479027 GGTAATGAGAATCCTCCTAGTCTCC 59.521 48.000 3.98 0.00 39.31 3.71
1597 3270 1.726853 AGAGTTCGGGCAAATCTTCG 58.273 50.000 0.00 0.00 35.90 3.79
1656 3329 2.224793 GGGGCTCAGGTATGGTTATTCC 60.225 54.545 0.00 0.00 0.00 3.01
1841 3515 4.265073 CCAGGAAGAGATTCACCGATTTT 58.735 43.478 0.00 0.00 0.00 1.82
2013 3697 6.369005 CAATTTGATGTCAGAACTCACTGTC 58.631 40.000 0.00 0.00 38.79 3.51
2165 3907 7.466805 ACTCGTCACATGATGAAATTTGTATG 58.533 34.615 0.00 0.00 39.72 2.39
2198 3940 2.364002 GGTGAGGAAGGAGATAGCTGAC 59.636 54.545 0.00 0.00 0.00 3.51
2216 3958 3.857052 TGACGAAACTGACAGACAAACT 58.143 40.909 10.08 0.00 0.00 2.66
2243 3985 6.073314 CCATGGAAAGGGAATATCATCTGTT 58.927 40.000 5.56 0.00 0.00 3.16
2282 4024 6.128117 GCATATTTTCTCCAAACGGTAAGTGA 60.128 38.462 0.00 0.00 0.00 3.41
2295 4037 3.005050 CGGTAAGTGATCCGGTAGCAATA 59.995 47.826 0.00 0.00 42.61 1.90
2317 4067 9.464714 CAATACTGGTAATATGTCTGTACAGTC 57.535 37.037 21.99 17.11 39.49 3.51
2324 4074 1.248785 TGTCTGTACAGTCGGGGAGC 61.249 60.000 21.99 5.05 0.00 4.70
2369 4119 7.989826 AGTGCTTTGTCAATATCAAATAGTCC 58.010 34.615 0.00 0.00 34.88 3.85
2418 4168 3.641437 TGTTGTTTGCTGCTGGTATTC 57.359 42.857 0.00 0.00 0.00 1.75
2457 4207 7.125811 AGCTTATCCCTTGATCAGTTTAGTACA 59.874 37.037 0.00 0.00 32.18 2.90
2461 4211 5.105310 TCCCTTGATCAGTTTAGTACAGAGC 60.105 44.000 0.00 0.00 0.00 4.09
2503 4253 1.402787 GCCATGTTGTATTCCCCCTG 58.597 55.000 0.00 0.00 0.00 4.45
2519 4269 4.225267 TCCCCCTGAGAACTTCTTTGTATC 59.775 45.833 0.00 0.00 0.00 2.24
2696 4446 7.953158 TGTTCATTCTTCTATATGCTACTGC 57.047 36.000 0.00 0.00 40.20 4.40
2731 4481 0.468400 AGGGTCAGCCGGAGAGTATC 60.468 60.000 5.05 0.00 34.97 2.24
2875 4625 9.155975 CTGTATAAGATGGTGCTATATTTGGTC 57.844 37.037 0.00 0.00 0.00 4.02
3062 4819 1.683938 CCAGCCAATCAGGATCTTGCA 60.684 52.381 0.00 0.00 41.22 4.08
3591 5384 6.432162 ACTGATGCTGTTGATGTAAGTTCAAT 59.568 34.615 0.00 0.00 35.68 2.57
3719 5517 5.931532 ACTAGCGATCTTTGTTGACAATTG 58.068 37.500 3.24 3.24 35.55 2.32
3832 5787 9.211410 ACCATTAATACCATGGATTTTGAATCA 57.789 29.630 21.47 0.00 43.70 2.57
4013 6002 7.038154 CAAATAATTGGTAACCATCGTCCAT 57.962 36.000 0.00 0.00 31.53 3.41
4099 6149 4.823442 CCCAGCTGCAAATAGATAACATGA 59.177 41.667 8.66 0.00 0.00 3.07
4150 6200 5.191522 TCATTGACCATCCTAGATTTCCACA 59.808 40.000 0.00 0.00 0.00 4.17
4162 6212 6.317391 CCTAGATTTCCACAAACCAGATCTTC 59.683 42.308 0.00 0.00 0.00 2.87
4163 6213 5.885465 AGATTTCCACAAACCAGATCTTCT 58.115 37.500 0.00 0.00 0.00 2.85
4164 6214 6.310149 AGATTTCCACAAACCAGATCTTCTT 58.690 36.000 0.00 0.00 0.00 2.52
4205 6255 5.127845 CAGATACTGGAAGGAAGAGCTTACA 59.872 44.000 0.00 0.00 39.30 2.41
4318 6368 3.002862 GTGACTATTTCGCAAACACACCA 59.997 43.478 0.00 0.00 34.56 4.17
4405 6455 3.922850 GCCTTTGCTCTTTAATGCAGAAC 59.077 43.478 0.00 0.00 40.46 3.01
4407 6457 5.531634 CCTTTGCTCTTTAATGCAGAACAA 58.468 37.500 0.00 0.00 40.46 2.83
4583 6634 5.102953 TGCTAATGATGCTGGAGTAAGTT 57.897 39.130 0.00 0.00 0.00 2.66
4591 6642 3.740115 TGCTGGAGTAAGTTTGGAGTTC 58.260 45.455 0.00 0.00 0.00 3.01
4758 6809 7.667043 TGTAATGTTCTTAGTTCGATTTGCT 57.333 32.000 0.00 0.00 0.00 3.91
4789 6840 5.815222 GGGATTGTGTTTTATGGTTTATGCC 59.185 40.000 0.00 0.00 0.00 4.40
4858 6910 7.946776 CCTTCCATCCCAATAGTCATATTTCTT 59.053 37.037 0.00 0.00 28.73 2.52
5109 7161 4.226384 AGCATCTGGATGGAGTGTATGTA 58.774 43.478 11.82 0.00 39.16 2.29
5192 7245 9.143155 AGGTCTTTTGTAAGTTTGAATGGTAAT 57.857 29.630 0.00 0.00 32.98 1.89
5233 7286 9.829507 GATCTGCATATAGGCAATCTAATACTT 57.170 33.333 13.75 0.00 44.40 2.24
5306 7368 7.388224 TGCAACACAGGTCGATAGTTAAAATAA 59.612 33.333 0.00 0.00 37.40 1.40
5406 7468 5.472478 AGGTTCGGTTTCTCTTTCATAAACC 59.528 40.000 6.20 6.20 45.64 3.27
5408 7470 6.016527 GGTTCGGTTTCTCTTTCATAAACCTT 60.017 38.462 12.79 0.00 46.49 3.50
5409 7471 6.796705 TCGGTTTCTCTTTCATAAACCTTC 57.203 37.500 12.79 0.00 46.49 3.46
5448 7693 6.582636 TGACTAGCCTTAGATGTACAATTGG 58.417 40.000 10.83 0.00 0.00 3.16
5517 7791 7.002879 AGCTTGGAATATGCAAGATGAATACT 58.997 34.615 14.65 0.00 46.92 2.12
5518 7792 8.159447 AGCTTGGAATATGCAAGATGAATACTA 58.841 33.333 14.65 0.00 46.92 1.82
5519 7793 8.954350 GCTTGGAATATGCAAGATGAATACTAT 58.046 33.333 14.65 0.00 46.92 2.12
5528 7802 9.895138 ATGCAAGATGAATACTATACATATGCA 57.105 29.630 15.82 15.82 43.67 3.96
5529 7803 9.723601 TGCAAGATGAATACTATACATATGCAA 57.276 29.630 1.58 0.00 40.46 4.08
5533 7807 9.794685 AGATGAATACTATACATATGCAAGACG 57.205 33.333 1.58 0.00 0.00 4.18
5534 7808 9.788960 GATGAATACTATACATATGCAAGACGA 57.211 33.333 1.58 0.00 0.00 4.20
5613 7887 5.233988 GCAATTTTGTGTTACCAGCCAATA 58.766 37.500 0.00 0.00 0.00 1.90
5641 7918 7.556275 TCTGTTGTTTTGACCTTTATTCTCACT 59.444 33.333 0.00 0.00 0.00 3.41
5690 7967 4.098914 ACATGACCCTTGAACTGCTTTA 57.901 40.909 0.00 0.00 0.00 1.85
5756 8034 7.698506 ATCATGTCAAAATGTCACATTCTCT 57.301 32.000 2.74 0.00 0.00 3.10
5760 8038 6.429624 TGTCAAAATGTCACATTCTCTTTCG 58.570 36.000 2.74 0.00 0.00 3.46
5795 8094 4.959631 CAACTTTGCTTATGTGCTTGTG 57.040 40.909 0.00 0.00 0.00 3.33
5884 8204 9.480053 AAAATTTACCATGTCTTTGACAATCAG 57.520 29.630 4.46 0.00 45.96 2.90
6049 8369 3.031736 TGTTAGTATCAGAGGTCCTGCC 58.968 50.000 0.00 0.00 42.62 4.85
6132 8452 9.656834 GCAGTTCAAAATTATTTATTTTCGTCG 57.343 29.630 0.00 0.00 43.00 5.12
6295 8618 1.068472 AGTCGTTCTGCAGTTCCTACG 60.068 52.381 14.67 15.57 0.00 3.51
6420 8938 8.481492 TGTATTAGGACGGGATACATTTCTAA 57.519 34.615 0.00 0.00 32.85 2.10
6421 8939 8.926374 TGTATTAGGACGGGATACATTTCTAAA 58.074 33.333 0.00 0.00 32.85 1.85
6422 8940 9.939802 GTATTAGGACGGGATACATTTCTAAAT 57.060 33.333 0.00 0.00 39.74 1.40
6424 8942 6.494666 AGGACGGGATACATTTCTAAATCA 57.505 37.500 0.00 0.00 39.74 2.57
6425 8943 6.895782 AGGACGGGATACATTTCTAAATCAA 58.104 36.000 0.00 0.00 39.74 2.57
6426 8944 7.343357 AGGACGGGATACATTTCTAAATCAAA 58.657 34.615 0.00 0.00 39.74 2.69
6427 8945 7.832187 AGGACGGGATACATTTCTAAATCAAAA 59.168 33.333 0.00 0.00 39.74 2.44
6428 8946 8.630037 GGACGGGATACATTTCTAAATCAAAAT 58.370 33.333 0.00 0.00 39.74 1.82
6472 8990 5.582950 TTTATAAGAGATGGGGATGTGGG 57.417 43.478 0.00 0.00 0.00 4.61
6473 8991 2.887454 TAAGAGATGGGGATGTGGGA 57.113 50.000 0.00 0.00 0.00 4.37
6474 8992 2.219216 AAGAGATGGGGATGTGGGAT 57.781 50.000 0.00 0.00 0.00 3.85
6475 8993 3.367280 AAGAGATGGGGATGTGGGATA 57.633 47.619 0.00 0.00 0.00 2.59
6476 8994 3.592221 AGAGATGGGGATGTGGGATAT 57.408 47.619 0.00 0.00 0.00 1.63
6477 8995 3.458831 AGAGATGGGGATGTGGGATATC 58.541 50.000 0.00 0.00 0.00 1.63
6478 8996 3.181391 AGAGATGGGGATGTGGGATATCA 60.181 47.826 4.83 0.00 0.00 2.15
6479 8997 2.915604 AGATGGGGATGTGGGATATCAC 59.084 50.000 4.83 0.39 38.09 3.06
6517 9035 6.934645 CCTTGCATCGGATAGGTATTTCTTAA 59.065 38.462 0.00 0.00 0.00 1.85
6578 9096 8.877779 GCATTAAGATTGTAGGCAGATGTATAG 58.122 37.037 0.00 0.00 0.00 1.31
6737 9255 2.742589 GTCGTTGGAAAGAATGAGGGAC 59.257 50.000 0.00 0.00 0.00 4.46
6857 9375 5.779771 TGGAAATCCAAGCCACTCTATTTTT 59.220 36.000 0.00 0.00 44.35 1.94
7044 9762 8.253113 AGCTAAAATTTCCATATTTGGTCACAG 58.747 33.333 1.86 0.00 44.06 3.66
7052 9770 5.003160 CCATATTTGGTCACAGTTGAGTCA 58.997 41.667 0.00 0.00 38.30 3.41
7282 10010 1.488393 GCTGGGAGCAAGAGAGGTAAT 59.512 52.381 0.00 0.00 41.89 1.89
7283 10011 2.092699 GCTGGGAGCAAGAGAGGTAATT 60.093 50.000 0.00 0.00 41.89 1.40
7439 10168 9.358872 GAGTGTTCATTTTTCCTTTTATCATCC 57.641 33.333 0.00 0.00 0.00 3.51
7490 10228 8.100164 TGTATTTCTCACCACATTCTAACATGA 58.900 33.333 0.00 0.00 0.00 3.07
7491 10229 7.621428 ATTTCTCACCACATTCTAACATGAG 57.379 36.000 0.00 0.00 34.68 2.90
7494 10232 6.950842 TCTCACCACATTCTAACATGAGATT 58.049 36.000 0.00 0.00 36.94 2.40
7526 10264 4.769488 TGCATTGCATACTTTAGGAAACCA 59.231 37.500 7.38 0.00 31.71 3.67
7528 10266 5.336372 GCATTGCATACTTTAGGAAACCACA 60.336 40.000 3.15 0.00 0.00 4.17
7554 10292 8.853077 AATCTGTAGATTTGAAGTCATTGTGA 57.147 30.769 1.35 0.00 41.64 3.58
7614 10354 1.599071 CCATGCACTAGTACATTGCCG 59.401 52.381 5.81 0.00 35.26 5.69
7673 10428 4.099266 TGATTCACACTTCCCTTGGTTTTG 59.901 41.667 0.00 0.00 0.00 2.44
7681 10437 5.239525 CACTTCCCTTGGTTTTGTAAGAGAG 59.760 44.000 0.00 0.00 0.00 3.20
7683 10439 5.640158 TCCCTTGGTTTTGTAAGAGAGAA 57.360 39.130 0.00 0.00 0.00 2.87
7686 10442 5.130350 CCTTGGTTTTGTAAGAGAGAACCA 58.870 41.667 2.37 2.37 45.70 3.67
7695 10451 8.561738 TTTGTAAGAGAGAACCAATGGAATAC 57.438 34.615 6.16 0.00 0.00 1.89
7746 10504 1.239347 GGCAACTTTCGAAGCTCCTT 58.761 50.000 7.01 0.00 0.00 3.36
7912 10670 5.278463 CCTTTACTCCTTGTTTGGTGACATG 60.278 44.000 0.00 0.00 42.32 3.21
7913 10671 3.297134 ACTCCTTGTTTGGTGACATGT 57.703 42.857 0.00 0.00 42.32 3.21
7914 10672 3.214328 ACTCCTTGTTTGGTGACATGTC 58.786 45.455 19.27 19.27 42.32 3.06
7917 10675 2.554032 CCTTGTTTGGTGACATGTCTCC 59.446 50.000 31.24 31.24 42.32 3.71
7919 10677 1.202879 TGTTTGGTGACATGTCTCCCC 60.203 52.381 33.32 25.31 41.29 4.81
7921 10679 1.444933 TTGGTGACATGTCTCCCCTT 58.555 50.000 33.32 0.00 41.29 3.95
7922 10680 2.335681 TGGTGACATGTCTCCCCTTA 57.664 50.000 33.32 18.72 41.29 2.69
7923 10681 2.845659 TGGTGACATGTCTCCCCTTAT 58.154 47.619 33.32 0.00 41.29 1.73
7925 10683 3.199946 TGGTGACATGTCTCCCCTTATTC 59.800 47.826 33.32 14.30 41.29 1.75
7928 10695 4.162320 GTGACATGTCTCCCCTTATTCTGA 59.838 45.833 25.55 0.00 0.00 3.27
7952 10719 8.535335 TGAGGGTCATATATAGCTGATTCTTTC 58.465 37.037 0.00 0.00 0.00 2.62
7955 10722 9.377312 GGGTCATATATAGCTGATTCTTTCTTC 57.623 37.037 0.00 0.00 0.00 2.87
8053 10825 4.242336 TGTGCTTGAGGATCTCTCTCTA 57.758 45.455 11.12 0.00 42.86 2.43
8054 10826 4.206375 TGTGCTTGAGGATCTCTCTCTAG 58.794 47.826 11.12 8.10 42.86 2.43
8055 10827 3.569701 GTGCTTGAGGATCTCTCTCTAGG 59.430 52.174 11.12 0.00 42.86 3.02
8205 10982 4.505217 GCGTGTGGATTGCGCTCG 62.505 66.667 9.73 8.53 46.55 5.03
8305 11083 4.131596 GCCCCTTTTGCACTATATTCGTA 58.868 43.478 0.00 0.00 0.00 3.43
8332 11110 8.309163 TGTTTGACAAAATGGAATAAATGCTC 57.691 30.769 1.27 0.00 0.00 4.26
8343 11121 7.457024 TGGAATAAATGCTCCATGATATGTG 57.543 36.000 0.00 0.00 36.79 3.21
8370 11148 2.293122 CTGGGATAGAGTTGAGAGCGAG 59.707 54.545 0.00 0.00 0.00 5.03
8415 11193 1.007336 CGCAGCGTAGTCGGAAGTTT 61.007 55.000 6.65 0.00 37.56 2.66
8417 11195 1.529865 GCAGCGTAGTCGGAAGTTTTT 59.470 47.619 0.00 0.00 37.56 1.94
8465 11244 1.442769 GTGCCATTTCTTGAGCTCGA 58.557 50.000 9.64 6.32 0.00 4.04
8466 11245 2.012673 GTGCCATTTCTTGAGCTCGAT 58.987 47.619 9.64 0.00 0.00 3.59
8467 11246 2.031437 GTGCCATTTCTTGAGCTCGATC 59.969 50.000 9.64 0.00 0.00 3.69
8468 11247 2.093288 TGCCATTTCTTGAGCTCGATCT 60.093 45.455 9.64 0.00 0.00 2.75
8469 11248 2.543430 GCCATTTCTTGAGCTCGATCTC 59.457 50.000 9.64 9.34 0.00 2.75
8470 11249 2.793790 CCATTTCTTGAGCTCGATCTCG 59.206 50.000 9.64 0.00 41.45 4.04
8574 11353 5.012328 ACCAAGAGGAAATCTACGACATC 57.988 43.478 0.00 0.00 37.23 3.06
8582 11361 8.158132 AGAGGAAATCTACGACATCACTATCTA 58.842 37.037 0.00 0.00 36.10 1.98
8592 11371 7.411808 ACGACATCACTATCTACCCCTAATAT 58.588 38.462 0.00 0.00 0.00 1.28
8639 11418 0.318762 GGGCCTCTCGCTGTTATAGG 59.681 60.000 0.84 0.00 37.74 2.57
8649 11428 3.067106 CGCTGTTATAGGCCCAGTAATG 58.933 50.000 0.00 0.00 0.00 1.90
8651 11430 4.065789 GCTGTTATAGGCCCAGTAATGAC 58.934 47.826 0.00 0.00 0.00 3.06
8670 11449 3.807622 TGACCAATCAACGAGAGACAAAC 59.192 43.478 0.00 0.00 0.00 2.93
8671 11450 4.058817 GACCAATCAACGAGAGACAAACT 58.941 43.478 0.00 0.00 0.00 2.66
8672 11451 5.209818 ACCAATCAACGAGAGACAAACTA 57.790 39.130 0.00 0.00 0.00 2.24
8673 11452 5.794894 ACCAATCAACGAGAGACAAACTAT 58.205 37.500 0.00 0.00 0.00 2.12
8674 11453 5.639506 ACCAATCAACGAGAGACAAACTATG 59.360 40.000 0.00 0.00 0.00 2.23
8675 11454 5.869344 CCAATCAACGAGAGACAAACTATGA 59.131 40.000 0.00 0.00 0.00 2.15
8676 11455 6.035435 CCAATCAACGAGAGACAAACTATGAG 59.965 42.308 0.00 0.00 0.00 2.90
8677 11456 5.959618 TCAACGAGAGACAAACTATGAGA 57.040 39.130 0.00 0.00 0.00 3.27
8678 11457 6.327279 TCAACGAGAGACAAACTATGAGAA 57.673 37.500 0.00 0.00 0.00 2.87
8679 11458 6.745116 TCAACGAGAGACAAACTATGAGAAA 58.255 36.000 0.00 0.00 0.00 2.52
8680 11459 7.207383 TCAACGAGAGACAAACTATGAGAAAA 58.793 34.615 0.00 0.00 0.00 2.29
8681 11460 7.709182 TCAACGAGAGACAAACTATGAGAAAAA 59.291 33.333 0.00 0.00 0.00 1.94
8682 11461 7.644986 ACGAGAGACAAACTATGAGAAAAAG 57.355 36.000 0.00 0.00 0.00 2.27
8683 11462 7.434492 ACGAGAGACAAACTATGAGAAAAAGA 58.566 34.615 0.00 0.00 0.00 2.52
8684 11463 7.926555 ACGAGAGACAAACTATGAGAAAAAGAA 59.073 33.333 0.00 0.00 0.00 2.52
8685 11464 8.217778 CGAGAGACAAACTATGAGAAAAAGAAC 58.782 37.037 0.00 0.00 0.00 3.01
8686 11465 8.964476 AGAGACAAACTATGAGAAAAAGAACA 57.036 30.769 0.00 0.00 0.00 3.18
8687 11466 8.831550 AGAGACAAACTATGAGAAAAAGAACAC 58.168 33.333 0.00 0.00 0.00 3.32
8688 11467 7.931275 AGACAAACTATGAGAAAAAGAACACC 58.069 34.615 0.00 0.00 0.00 4.16
8689 11468 7.556275 AGACAAACTATGAGAAAAAGAACACCA 59.444 33.333 0.00 0.00 0.00 4.17
8690 11469 8.237811 ACAAACTATGAGAAAAAGAACACCAT 57.762 30.769 0.00 0.00 0.00 3.55
8691 11470 8.695456 ACAAACTATGAGAAAAAGAACACCATT 58.305 29.630 0.00 0.00 0.00 3.16
8692 11471 8.971321 CAAACTATGAGAAAAAGAACACCATTG 58.029 33.333 0.00 0.00 0.00 2.82
8693 11472 7.219484 ACTATGAGAAAAAGAACACCATTGG 57.781 36.000 0.00 0.00 0.00 3.16
8694 11473 4.935352 TGAGAAAAAGAACACCATTGGG 57.065 40.909 7.78 0.00 41.29 4.12
8695 11474 3.069443 TGAGAAAAAGAACACCATTGGGC 59.931 43.478 7.78 0.00 37.90 5.36
8696 11475 3.308401 AGAAAAAGAACACCATTGGGCT 58.692 40.909 7.78 0.00 37.90 5.19
8697 11476 3.070015 AGAAAAAGAACACCATTGGGCTG 59.930 43.478 7.78 0.00 37.90 4.85
8698 11477 1.341080 AAAGAACACCATTGGGCTGG 58.659 50.000 7.78 0.00 42.35 4.85
8699 11478 1.187567 AAGAACACCATTGGGCTGGC 61.188 55.000 7.78 0.00 40.15 4.85
8700 11479 2.604382 AACACCATTGGGCTGGCC 60.604 61.111 14.23 14.23 40.15 5.36
8701 11480 3.164610 AACACCATTGGGCTGGCCT 62.165 57.895 21.72 0.00 40.15 5.19
8702 11481 1.799157 AACACCATTGGGCTGGCCTA 61.799 55.000 21.72 14.63 40.15 3.93
8703 11482 1.000233 CACCATTGGGCTGGCCTAA 60.000 57.895 21.72 12.50 40.15 2.69
8704 11483 1.000359 ACCATTGGGCTGGCCTAAC 60.000 57.895 21.72 0.00 39.36 2.34
8705 11484 1.758122 CCATTGGGCTGGCCTAACC 60.758 63.158 21.72 3.47 39.36 2.85
8721 11500 4.440127 CCAAGCATGGCGGCCAAC 62.440 66.667 27.70 20.73 40.58 3.77
8722 11501 4.440127 CAAGCATGGCGGCCAACC 62.440 66.667 27.70 19.06 36.95 3.77
8733 11512 3.581163 GGCCAACCCCGAAAGATAA 57.419 52.632 0.00 0.00 0.00 1.75
8734 11513 1.842052 GGCCAACCCCGAAAGATAAA 58.158 50.000 0.00 0.00 0.00 1.40
8735 11514 1.749063 GGCCAACCCCGAAAGATAAAG 59.251 52.381 0.00 0.00 0.00 1.85
8736 11515 1.134367 GCCAACCCCGAAAGATAAAGC 59.866 52.381 0.00 0.00 0.00 3.51
8737 11516 1.400494 CCAACCCCGAAAGATAAAGCG 59.600 52.381 0.00 0.00 0.00 4.68
8738 11517 2.081462 CAACCCCGAAAGATAAAGCGT 58.919 47.619 0.00 0.00 0.00 5.07
8739 11518 1.734163 ACCCCGAAAGATAAAGCGTG 58.266 50.000 0.00 0.00 0.00 5.34
8740 11519 0.377203 CCCCGAAAGATAAAGCGTGC 59.623 55.000 0.00 0.00 0.00 5.34
8741 11520 1.369625 CCCGAAAGATAAAGCGTGCT 58.630 50.000 0.00 0.00 0.00 4.40
8742 11521 1.737793 CCCGAAAGATAAAGCGTGCTT 59.262 47.619 0.24 0.24 37.98 3.91
8743 11522 2.161609 CCCGAAAGATAAAGCGTGCTTT 59.838 45.455 21.99 21.99 46.56 3.51
8744 11523 3.163594 CCGAAAGATAAAGCGTGCTTTG 58.836 45.455 25.69 10.03 44.84 2.77
8745 11524 2.589841 CGAAAGATAAAGCGTGCTTTGC 59.410 45.455 25.69 18.06 44.84 3.68
8746 11525 3.564511 GAAAGATAAAGCGTGCTTTGCA 58.435 40.909 25.69 10.59 44.84 4.08
8747 11526 3.641437 AAGATAAAGCGTGCTTTGCAA 57.359 38.095 25.69 9.92 44.84 4.08
8748 11527 3.207474 AGATAAAGCGTGCTTTGCAAG 57.793 42.857 25.69 1.37 44.84 4.01
8749 11528 2.554032 AGATAAAGCGTGCTTTGCAAGT 59.446 40.909 25.69 9.52 44.84 3.16
8750 11529 2.861462 TAAAGCGTGCTTTGCAAGTT 57.139 40.000 25.69 4.28 44.84 2.66
8751 11530 2.008752 AAAGCGTGCTTTGCAAGTTT 57.991 40.000 18.32 4.84 43.72 2.66
8752 11531 1.280066 AAGCGTGCTTTGCAAGTTTG 58.720 45.000 0.24 0.00 39.38 2.93
8753 11532 0.173255 AGCGTGCTTTGCAAGTTTGT 59.827 45.000 0.00 0.00 41.47 2.83
8754 11533 0.298411 GCGTGCTTTGCAAGTTTGTG 59.702 50.000 0.00 0.00 41.47 3.33
8755 11534 1.906757 CGTGCTTTGCAAGTTTGTGA 58.093 45.000 0.00 0.00 41.47 3.58
8756 11535 1.847999 CGTGCTTTGCAAGTTTGTGAG 59.152 47.619 0.00 0.00 41.47 3.51
8757 11536 1.589779 GTGCTTTGCAAGTTTGTGAGC 59.410 47.619 9.56 9.56 41.47 4.26
8758 11537 1.211743 GCTTTGCAAGTTTGTGAGCC 58.788 50.000 0.00 0.00 0.00 4.70
8759 11538 1.202452 GCTTTGCAAGTTTGTGAGCCT 60.202 47.619 0.00 0.00 0.00 4.58
8760 11539 2.735823 CTTTGCAAGTTTGTGAGCCTC 58.264 47.619 0.00 0.00 0.00 4.70
8761 11540 0.662619 TTGCAAGTTTGTGAGCCTCG 59.337 50.000 0.00 0.00 0.00 4.63
8762 11541 0.179059 TGCAAGTTTGTGAGCCTCGA 60.179 50.000 0.00 0.00 0.00 4.04
8763 11542 1.160137 GCAAGTTTGTGAGCCTCGAT 58.840 50.000 0.00 0.00 0.00 3.59
8764 11543 2.289382 TGCAAGTTTGTGAGCCTCGATA 60.289 45.455 0.00 0.00 0.00 2.92
8765 11544 2.939103 GCAAGTTTGTGAGCCTCGATAT 59.061 45.455 0.00 0.00 0.00 1.63
8766 11545 3.375299 GCAAGTTTGTGAGCCTCGATATT 59.625 43.478 0.00 0.00 0.00 1.28
8767 11546 4.142600 GCAAGTTTGTGAGCCTCGATATTT 60.143 41.667 0.00 0.00 0.00 1.40
8768 11547 5.327091 CAAGTTTGTGAGCCTCGATATTTG 58.673 41.667 0.00 0.00 0.00 2.32
8769 11548 4.832248 AGTTTGTGAGCCTCGATATTTGA 58.168 39.130 0.00 0.00 0.00 2.69
8770 11549 4.872691 AGTTTGTGAGCCTCGATATTTGAG 59.127 41.667 0.00 0.18 0.00 3.02
8771 11550 2.826428 TGTGAGCCTCGATATTTGAGC 58.174 47.619 0.00 0.00 31.98 4.26
8772 11551 2.432146 TGTGAGCCTCGATATTTGAGCT 59.568 45.455 0.00 0.00 31.98 4.09
8773 11552 3.056304 GTGAGCCTCGATATTTGAGCTC 58.944 50.000 6.82 6.82 37.25 4.09
8774 11553 2.036475 TGAGCCTCGATATTTGAGCTCC 59.964 50.000 12.15 0.00 36.58 4.70
8775 11554 2.298729 GAGCCTCGATATTTGAGCTCCT 59.701 50.000 12.15 0.00 33.94 3.69
8776 11555 3.501349 AGCCTCGATATTTGAGCTCCTA 58.499 45.455 12.15 0.00 31.98 2.94
8777 11556 3.898123 AGCCTCGATATTTGAGCTCCTAA 59.102 43.478 12.15 6.03 31.98 2.69
8778 11557 4.345257 AGCCTCGATATTTGAGCTCCTAAA 59.655 41.667 12.15 6.47 31.98 1.85
8779 11558 5.012561 AGCCTCGATATTTGAGCTCCTAAAT 59.987 40.000 12.15 13.55 31.98 1.40
8780 11559 5.703130 GCCTCGATATTTGAGCTCCTAAATT 59.297 40.000 12.15 3.19 31.98 1.82
8781 11560 6.128418 GCCTCGATATTTGAGCTCCTAAATTC 60.128 42.308 12.15 10.20 31.98 2.17
8782 11561 6.931281 CCTCGATATTTGAGCTCCTAAATTCA 59.069 38.462 12.15 0.00 31.98 2.57
8783 11562 7.605691 CCTCGATATTTGAGCTCCTAAATTCAT 59.394 37.037 12.15 3.21 31.98 2.57
8784 11563 8.315391 TCGATATTTGAGCTCCTAAATTCATG 57.685 34.615 12.15 3.56 0.00 3.07
8785 11564 8.150296 TCGATATTTGAGCTCCTAAATTCATGA 58.850 33.333 12.15 0.00 0.00 3.07
8786 11565 8.226448 CGATATTTGAGCTCCTAAATTCATGAC 58.774 37.037 12.15 1.01 0.00 3.06
8787 11566 9.282569 GATATTTGAGCTCCTAAATTCATGACT 57.717 33.333 12.15 0.00 0.00 3.41
8788 11567 7.951347 ATTTGAGCTCCTAAATTCATGACTT 57.049 32.000 12.15 0.00 0.00 3.01
8790 11569 9.638176 ATTTGAGCTCCTAAATTCATGACTTAT 57.362 29.630 12.15 0.00 0.00 1.73
8791 11570 9.466497 TTTGAGCTCCTAAATTCATGACTTATT 57.534 29.630 12.15 0.00 0.00 1.40
8792 11571 9.466497 TTGAGCTCCTAAATTCATGACTTATTT 57.534 29.630 12.15 8.50 0.00 1.40
8793 11572 9.466497 TGAGCTCCTAAATTCATGACTTATTTT 57.534 29.630 12.15 1.98 0.00 1.82
8819 11598 8.854614 ACAGATTTCAAAAGCAGACTTATACT 57.145 30.769 0.00 0.00 34.05 2.12
8820 11599 8.725148 ACAGATTTCAAAAGCAGACTTATACTG 58.275 33.333 0.00 0.00 34.05 2.74
8821 11600 8.725148 CAGATTTCAAAAGCAGACTTATACTGT 58.275 33.333 0.00 0.00 37.64 3.55
8822 11601 9.944376 AGATTTCAAAAGCAGACTTATACTGTA 57.056 29.630 0.00 0.00 37.64 2.74
8825 11604 9.772973 TTTCAAAAGCAGACTTATACTGTAAGA 57.227 29.630 0.00 0.00 33.45 2.10
8826 11605 9.944376 TTCAAAAGCAGACTTATACTGTAAGAT 57.056 29.630 0.00 0.00 33.45 2.40
8827 11606 9.944376 TCAAAAGCAGACTTATACTGTAAGATT 57.056 29.630 0.00 0.00 33.45 2.40
8830 11609 9.944376 AAAGCAGACTTATACTGTAAGATTTCA 57.056 29.630 0.00 0.00 33.45 2.69
8832 11611 9.539825 AGCAGACTTATACTGTAAGATTTCATG 57.460 33.333 0.00 0.00 37.43 3.07
8833 11612 8.279103 GCAGACTTATACTGTAAGATTTCATGC 58.721 37.037 0.00 0.00 37.43 4.06
8834 11613 9.317936 CAGACTTATACTGTAAGATTTCATGCA 57.682 33.333 0.00 0.00 37.43 3.96
8835 11614 9.319143 AGACTTATACTGTAAGATTTCATGCAC 57.681 33.333 0.00 0.00 37.43 4.57
8836 11615 9.098355 GACTTATACTGTAAGATTTCATGCACA 57.902 33.333 0.00 0.00 37.43 4.57
8837 11616 9.448438 ACTTATACTGTAAGATTTCATGCACAA 57.552 29.630 0.00 0.00 37.43 3.33
8841 11620 5.865552 ACTGTAAGATTTCATGCACAATTGC 59.134 36.000 5.05 0.00 43.69 3.56
8851 11630 3.975992 CACAATTGCACCGTAGCTC 57.024 52.632 5.05 0.00 34.99 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.924511 ACACTAGGCTATTTTATATGTTGCAT 57.075 30.769 0.00 0.00 0.00 3.96
42 43 8.210946 AGACACTAGGCTATTTTATATGTTGCA 58.789 33.333 0.00 0.00 0.00 4.08
43 44 8.608844 AGACACTAGGCTATTTTATATGTTGC 57.391 34.615 0.00 0.00 0.00 4.17
51 52 9.959721 ATGAAAGAAAGACACTAGGCTATTTTA 57.040 29.630 0.00 0.00 0.00 1.52
55 102 6.820656 CACATGAAAGAAAGACACTAGGCTAT 59.179 38.462 0.00 0.00 0.00 2.97
57 104 4.999950 CACATGAAAGAAAGACACTAGGCT 59.000 41.667 0.00 0.00 0.00 4.58
87 134 9.104965 GGGGCCTTCACAAAAATAAATAAATAC 57.895 33.333 0.84 0.00 0.00 1.89
89 136 6.821160 CGGGGCCTTCACAAAAATAAATAAAT 59.179 34.615 0.84 0.00 0.00 1.40
93 140 3.055458 CCGGGGCCTTCACAAAAATAAAT 60.055 43.478 0.84 0.00 0.00 1.40
94 141 2.300437 CCGGGGCCTTCACAAAAATAAA 59.700 45.455 0.84 0.00 0.00 1.40
95 142 1.896465 CCGGGGCCTTCACAAAAATAA 59.104 47.619 0.84 0.00 0.00 1.40
96 143 1.075698 TCCGGGGCCTTCACAAAAATA 59.924 47.619 0.84 0.00 0.00 1.40
98 145 0.178947 ATCCGGGGCCTTCACAAAAA 60.179 50.000 0.84 0.00 0.00 1.94
99 146 0.610785 GATCCGGGGCCTTCACAAAA 60.611 55.000 0.84 0.00 0.00 2.44
100 147 1.001393 GATCCGGGGCCTTCACAAA 60.001 57.895 0.84 0.00 0.00 2.83
101 148 1.923395 AGATCCGGGGCCTTCACAA 60.923 57.895 0.84 0.00 0.00 3.33
102 149 2.285368 AGATCCGGGGCCTTCACA 60.285 61.111 0.84 0.00 0.00 3.58
103 150 1.335132 TACAGATCCGGGGCCTTCAC 61.335 60.000 0.84 0.00 0.00 3.18
104 151 0.619255 TTACAGATCCGGGGCCTTCA 60.619 55.000 0.84 0.00 0.00 3.02
110 157 3.560636 ACTTTCATTACAGATCCGGGG 57.439 47.619 0.00 0.00 0.00 5.73
112 159 5.290386 GGAGTACTTTCATTACAGATCCGG 58.710 45.833 0.00 0.00 0.00 5.14
115 162 7.103641 TGTTGGGAGTACTTTCATTACAGATC 58.896 38.462 0.00 0.00 0.00 2.75
125 172 8.957466 AGCTTTTATTATGTTGGGAGTACTTTC 58.043 33.333 0.00 0.00 0.00 2.62
127 174 8.107095 TGAGCTTTTATTATGTTGGGAGTACTT 58.893 33.333 0.00 0.00 0.00 2.24
151 216 2.441375 TGGTTCAAGGACCTCAATGTGA 59.559 45.455 0.00 0.00 40.47 3.58
152 217 2.554032 GTGGTTCAAGGACCTCAATGTG 59.446 50.000 0.00 0.00 40.47 3.21
173 238 2.995466 TGGTCGTAGTGGTCGTTTAG 57.005 50.000 0.00 0.00 0.00 1.85
175 240 2.600470 TTTGGTCGTAGTGGTCGTTT 57.400 45.000 0.00 0.00 0.00 3.60
184 249 4.164802 CGACGATTCATTTTGGTCGTAG 57.835 45.455 3.93 0.00 46.07 3.51
188 253 2.505866 GCACGACGATTCATTTTGGTC 58.494 47.619 0.00 0.00 0.00 4.02
189 254 2.611974 GCACGACGATTCATTTTGGT 57.388 45.000 0.00 0.00 0.00 3.67
216 281 0.179073 GTCATGATGACCCCGTGAGG 60.179 60.000 14.48 0.00 44.16 3.86
217 282 3.369381 GTCATGATGACCCCGTGAG 57.631 57.895 14.48 0.00 41.37 3.51
226 291 3.195396 TGTCATCGACAAGGTCATGATGA 59.805 43.478 0.00 10.77 39.78 2.92
227 292 3.524541 TGTCATCGACAAGGTCATGATG 58.475 45.455 0.00 0.00 39.78 3.07
228 293 3.893326 TGTCATCGACAAGGTCATGAT 57.107 42.857 0.00 0.00 39.78 2.45
229 294 3.893326 ATGTCATCGACAAGGTCATGA 57.107 42.857 0.22 0.00 45.96 3.07
231 296 4.578871 TCAAATGTCATCGACAAGGTCAT 58.421 39.130 0.22 0.00 45.96 3.06
235 310 5.762045 ACTTTTCAAATGTCATCGACAAGG 58.238 37.500 0.22 0.00 45.96 3.61
249 324 5.065346 TGCATGTGTACGAAGACTTTTCAAA 59.935 36.000 0.00 0.00 0.00 2.69
253 328 4.997395 AGATGCATGTGTACGAAGACTTTT 59.003 37.500 2.46 0.00 0.00 2.27
254 329 4.569943 AGATGCATGTGTACGAAGACTTT 58.430 39.130 2.46 0.00 0.00 2.66
265 340 3.198068 GTCGGTCATTAGATGCATGTGT 58.802 45.455 2.46 0.00 0.00 3.72
272 347 2.483714 CCAGGGTGTCGGTCATTAGATG 60.484 54.545 0.00 0.00 0.00 2.90
273 348 1.762957 CCAGGGTGTCGGTCATTAGAT 59.237 52.381 0.00 0.00 0.00 1.98
274 349 1.191535 CCAGGGTGTCGGTCATTAGA 58.808 55.000 0.00 0.00 0.00 2.10
277 352 1.983224 CTCCAGGGTGTCGGTCATT 59.017 57.895 0.00 0.00 0.00 2.57
278 353 2.660064 GCTCCAGGGTGTCGGTCAT 61.660 63.158 0.00 0.00 0.00 3.06
279 354 3.311110 GCTCCAGGGTGTCGGTCA 61.311 66.667 0.00 0.00 0.00 4.02
286 361 1.746615 CGATTGTGGCTCCAGGGTG 60.747 63.158 0.00 0.00 0.00 4.61
287 362 2.185310 GACGATTGTGGCTCCAGGGT 62.185 60.000 0.00 0.00 0.00 4.34
291 366 0.460109 CGATGACGATTGTGGCTCCA 60.460 55.000 0.00 0.00 42.66 3.86
292 367 0.460284 ACGATGACGATTGTGGCTCC 60.460 55.000 0.00 0.00 42.66 4.70
298 373 2.669434 CGGGTTTAACGATGACGATTGT 59.331 45.455 0.00 0.00 42.66 2.71
301 376 2.264813 CACGGGTTTAACGATGACGAT 58.735 47.619 0.00 0.00 42.66 3.73
306 381 1.798283 TCCACACGGGTTTAACGATG 58.202 50.000 0.00 0.00 38.11 3.84
307 382 2.773993 ATCCACACGGGTTTAACGAT 57.226 45.000 0.00 0.00 38.11 3.73
308 383 2.298446 TGTATCCACACGGGTTTAACGA 59.702 45.455 0.00 0.00 38.11 3.85
313 388 1.883926 GCTTTGTATCCACACGGGTTT 59.116 47.619 0.00 0.00 38.11 3.27
319 394 1.202177 CCATGCGCTTTGTATCCACAC 60.202 52.381 9.73 0.00 33.30 3.82
320 395 1.093972 CCATGCGCTTTGTATCCACA 58.906 50.000 9.73 0.00 0.00 4.17
321 396 0.248621 GCCATGCGCTTTGTATCCAC 60.249 55.000 9.73 0.00 0.00 4.02
324 399 1.334556 TGATGCCATGCGCTTTGTATC 59.665 47.619 9.73 13.26 38.78 2.24
325 400 1.391577 TGATGCCATGCGCTTTGTAT 58.608 45.000 9.73 2.91 38.78 2.29
326 401 1.391577 ATGATGCCATGCGCTTTGTA 58.608 45.000 9.73 0.00 38.78 2.41
327 402 1.391577 TATGATGCCATGCGCTTTGT 58.608 45.000 9.73 0.00 38.78 2.83
328 403 2.287970 ACATATGATGCCATGCGCTTTG 60.288 45.455 10.38 6.44 38.78 2.77
331 406 1.268625 CAACATATGATGCCATGCGCT 59.731 47.619 10.38 0.00 38.78 5.92
332 407 1.001048 ACAACATATGATGCCATGCGC 60.001 47.619 10.38 0.00 34.31 6.09
333 408 2.291190 TGACAACATATGATGCCATGCG 59.709 45.455 10.38 0.00 34.31 4.73
334 409 3.994204 TGACAACATATGATGCCATGC 57.006 42.857 10.38 0.00 34.31 4.06
336 411 3.243168 GCGTTGACAACATATGATGCCAT 60.243 43.478 18.09 0.00 36.81 4.40
337 412 2.097304 GCGTTGACAACATATGATGCCA 59.903 45.455 18.09 3.49 0.00 4.92
338 413 2.719798 GCGTTGACAACATATGATGCC 58.280 47.619 18.09 0.33 0.00 4.40
339 414 2.030335 TCGCGTTGACAACATATGATGC 59.970 45.455 18.09 9.98 0.00 3.91
369 444 2.225727 GCAACAAGGTTAGGGTTTCTCG 59.774 50.000 0.00 0.00 0.00 4.04
377 452 3.140325 TCTTGAGGCAACAAGGTTAGG 57.860 47.619 18.95 0.71 44.84 2.69
378 453 4.214332 GTCTTCTTGAGGCAACAAGGTTAG 59.786 45.833 18.95 14.76 44.84 2.34
393 468 5.050091 AGCGTAAACTCATGTTGTCTTCTTG 60.050 40.000 0.00 0.00 36.39 3.02
397 472 3.498397 CCAGCGTAAACTCATGTTGTCTT 59.502 43.478 0.00 0.00 36.39 3.01
402 477 2.076863 GCTCCAGCGTAAACTCATGTT 58.923 47.619 0.00 0.00 38.16 2.71
415 490 1.590259 GATTCGACGGAGCTCCAGC 60.590 63.158 31.67 20.83 42.49 4.85
416 491 1.066587 GGATTCGACGGAGCTCCAG 59.933 63.158 31.67 24.69 35.14 3.86
418 493 2.026301 CGGATTCGACGGAGCTCC 59.974 66.667 23.79 23.79 39.00 4.70
419 494 1.298488 GACGGATTCGACGGAGCTC 60.298 63.158 4.71 4.71 40.11 4.09
426 779 1.386533 TCCACTAGGACGGATTCGAC 58.613 55.000 0.00 0.00 39.61 4.20
438 791 2.158986 CCTCCTTGAGCATGTCCACTAG 60.159 54.545 0.00 0.00 0.00 2.57
441 794 0.615331 TCCTCCTTGAGCATGTCCAC 59.385 55.000 0.00 0.00 0.00 4.02
453 806 0.325671 TTCGGCCTCTGATCCTCCTT 60.326 55.000 0.00 0.00 0.00 3.36
459 812 0.537188 TGGTCTTTCGGCCTCTGATC 59.463 55.000 0.00 0.00 0.00 2.92
462 815 1.743252 GCTGGTCTTTCGGCCTCTG 60.743 63.158 0.00 0.00 33.14 3.35
467 820 1.355066 CTTCGAGCTGGTCTTTCGGC 61.355 60.000 5.23 0.00 39.22 5.54
487 840 1.153549 GACCATGGAGGCGTCTCAC 60.154 63.158 21.47 8.94 43.14 3.51
495 848 2.124403 GGCAGCAGACCATGGAGG 60.124 66.667 21.47 8.25 45.67 4.30
502 855 0.978146 TCTTCTAGGGGCAGCAGACC 60.978 60.000 0.00 0.00 44.93 3.85
503 856 0.905357 TTCTTCTAGGGGCAGCAGAC 59.095 55.000 0.00 0.00 0.00 3.51
586 1173 1.656095 CTTCGAACTGACGATTGCTCC 59.344 52.381 0.00 0.00 41.82 4.70
614 1201 9.619316 TTGGTAATAAATGTGAACTGAAATTCG 57.381 29.630 0.00 0.00 0.00 3.34
641 1228 7.497909 TGAGGTTCGAATTTTGAACTTCTTAGT 59.502 33.333 28.11 10.00 46.58 2.24
642 1229 7.798982 GTGAGGTTCGAATTTTGAACTTCTTAG 59.201 37.037 28.11 0.00 46.58 2.18
677 1271 1.375908 TGCCTTCTTACTGCCGCAG 60.376 57.895 19.08 19.08 37.52 5.18
678 1272 1.671054 GTGCCTTCTTACTGCCGCA 60.671 57.895 0.00 0.00 0.00 5.69
679 1273 2.740714 CGTGCCTTCTTACTGCCGC 61.741 63.158 0.00 0.00 0.00 6.53
680 1274 1.078759 CTCGTGCCTTCTTACTGCCG 61.079 60.000 0.00 0.00 0.00 5.69
681 1275 0.741221 CCTCGTGCCTTCTTACTGCC 60.741 60.000 0.00 0.00 0.00 4.85
682 1276 0.741221 CCCTCGTGCCTTCTTACTGC 60.741 60.000 0.00 0.00 0.00 4.40
683 1277 0.108138 CCCCTCGTGCCTTCTTACTG 60.108 60.000 0.00 0.00 0.00 2.74
684 1278 1.265454 CCCCCTCGTGCCTTCTTACT 61.265 60.000 0.00 0.00 0.00 2.24
693 1287 4.301027 CGGATAGCCCCCTCGTGC 62.301 72.222 0.00 0.00 0.00 5.34
694 1288 2.989173 TACCGGATAGCCCCCTCGTG 62.989 65.000 9.46 0.00 0.00 4.35
770 2060 2.293934 GGAGGGGATGGGATGGGA 59.706 66.667 0.00 0.00 0.00 4.37
774 2067 2.038330 GTGGGGAGGGGATGGGAT 60.038 66.667 0.00 0.00 0.00 3.85
779 2072 1.165782 TTTGGAGTGGGGAGGGGAT 59.834 57.895 0.00 0.00 0.00 3.85
790 2083 2.291930 TGAGTTGGTTTGGGTTTGGAGT 60.292 45.455 0.00 0.00 0.00 3.85
827 2120 4.436998 GTCTGGTGGCGTCTCGGG 62.437 72.222 0.00 0.00 0.00 5.14
828 2121 4.436998 GGTCTGGTGGCGTCTCGG 62.437 72.222 0.00 0.00 0.00 4.63
829 2122 4.778415 CGGTCTGGTGGCGTCTCG 62.778 72.222 0.00 0.00 0.00 4.04
838 2131 3.717294 GGATGGTGGCGGTCTGGT 61.717 66.667 0.00 0.00 0.00 4.00
1211 2816 3.127533 GCCAAATCGCGCAGTCCT 61.128 61.111 8.75 0.00 0.00 3.85
1284 2904 3.873910 AGCAACAGCGGTACAAATCTAT 58.126 40.909 0.00 0.00 0.00 1.98
1293 2913 1.669604 TCAAACAAGCAACAGCGGTA 58.330 45.000 0.00 0.00 0.00 4.02
1294 2914 0.814457 TTCAAACAAGCAACAGCGGT 59.186 45.000 0.00 0.00 0.00 5.68
1375 3004 4.450053 AGTAGTGGTAGTACCTAGCTTCG 58.550 47.826 20.07 0.00 39.58 3.79
1391 3044 7.774157 TGATCCCAAGTAGTAGAAGTAGTAGTG 59.226 40.741 0.00 0.00 0.00 2.74
1437 3101 5.399113 AGACTAGGAGGATTCTCATTACCC 58.601 45.833 2.72 0.00 41.69 3.69
1459 3124 3.715854 GCAGAATTGCTTGCTGGAG 57.284 52.632 0.00 0.00 46.95 3.86
1486 3151 4.235360 GCGCTTGAACTACTCTTAACAGA 58.765 43.478 0.00 0.00 0.00 3.41
1656 3329 2.354109 TCGACAAGCTCTTACTGCTG 57.646 50.000 0.00 0.00 41.03 4.41
1841 3515 8.258007 ACAAGACGAAGAATAGATGAATTACCA 58.742 33.333 0.00 0.00 0.00 3.25
1943 3626 9.859427 CAAACTCAAATTACATTCCACATATGT 57.141 29.630 1.41 1.41 39.44 2.29
2013 3697 3.184541 GGCTTAGTGCAGCATTTGAATG 58.815 45.455 0.00 0.00 45.15 2.67
2165 3907 2.345760 CCTCACCATGGCTGCAACC 61.346 63.158 13.04 0.00 0.00 3.77
2198 3940 2.286418 GCCAGTTTGTCTGTCAGTTTCG 60.286 50.000 0.00 0.00 42.19 3.46
2216 3958 2.517553 TGATATTCCCTTTCCATGGCCA 59.482 45.455 8.56 8.56 0.00 5.36
2243 3985 7.095183 AGAAAATATGCTTAGATGGATGGGA 57.905 36.000 0.00 0.00 0.00 4.37
2282 4024 6.212791 ACATATTACCAGTATTGCTACCGGAT 59.787 38.462 9.46 0.00 30.99 4.18
2295 4037 5.067413 CCGACTGTACAGACATATTACCAGT 59.933 44.000 29.30 2.38 34.24 4.00
2317 4067 1.078001 ACCATTAAACCGCTCCCCG 60.078 57.895 0.00 0.00 0.00 5.73
2324 4074 7.309920 AGCACTAAAATAACACCATTAAACCG 58.690 34.615 0.00 0.00 0.00 4.44
2369 4119 4.885413 TGAATTGAAAAATGGAGGTGCAG 58.115 39.130 0.00 0.00 0.00 4.41
2418 4168 7.993183 TCAAGGGATAAGCTAAAGGTAAATCAG 59.007 37.037 0.00 0.00 0.00 2.90
2457 4207 2.769209 ACCAATGACTAGGATGGCTCT 58.231 47.619 0.00 0.00 36.37 4.09
2461 4211 4.081972 CGATCCTACCAATGACTAGGATGG 60.082 50.000 18.42 14.86 45.99 3.51
2483 4233 0.106719 AGGGGGAATACAACATGGCG 60.107 55.000 0.00 0.00 0.00 5.69
2503 4253 7.852516 AGAACAAACGATACAAAGAAGTTCTC 58.147 34.615 5.70 0.00 38.92 2.87
2519 4269 9.019764 ACATGACAAAAATAAAGAGAACAAACG 57.980 29.630 0.00 0.00 0.00 3.60
2683 4433 6.652481 ACAAGCATAAAGGCAGTAGCATATAG 59.348 38.462 0.00 0.00 44.61 1.31
2696 4446 4.843728 TGACCCTCTAACAAGCATAAAGG 58.156 43.478 0.00 0.00 0.00 3.11
2731 4481 5.288804 ACCATGTTTTCAATTTCCTGAACG 58.711 37.500 0.00 0.00 35.07 3.95
3062 4819 7.201591 CGTGAAATCTTGATAGCATCAGAAGTT 60.202 37.037 0.00 0.00 40.94 2.66
3139 4896 9.638239 ATGACATTAACCACATTACACAAAATC 57.362 29.630 0.00 0.00 0.00 2.17
3234 4991 6.291648 AGATAACATCAGTCTGAAGCTTCA 57.708 37.500 26.87 26.87 35.57 3.02
3312 5076 7.537596 TCCACAAAGACAAATTGAATGGTAT 57.462 32.000 0.00 0.00 30.20 2.73
3317 5081 9.643693 GTTGATATCCACAAAGACAAATTGAAT 57.356 29.630 0.00 0.00 0.00 2.57
3457 5238 4.202567 TGGTTAGAAGTGCCAAGAGGAATT 60.203 41.667 0.00 0.00 36.89 2.17
3719 5517 2.203480 TGGGGCAAAGTGAGGCAC 60.203 61.111 0.00 0.00 35.18 5.01
3832 5787 4.814224 AAGGTTGGGGCATACATAAGAT 57.186 40.909 0.00 0.00 0.00 2.40
3963 5952 0.397535 CAAATGCCACCTAGCCCCAT 60.398 55.000 0.00 0.00 0.00 4.00
3965 5954 1.758122 CCAAATGCCACCTAGCCCC 60.758 63.158 0.00 0.00 0.00 5.80
4040 6029 2.811431 TGAAAACACAGTAATCAGGGCG 59.189 45.455 0.00 0.00 0.00 6.13
4122 6172 7.173722 GGAAATCTAGGATGGTCAATGATCAT 58.826 38.462 9.00 9.00 35.94 2.45
4150 6200 7.509546 TCAAACTCAGTAAGAAGATCTGGTTT 58.490 34.615 0.00 0.00 35.36 3.27
4162 6212 5.929697 TCTGCACAATCAAACTCAGTAAG 57.070 39.130 0.00 0.00 0.00 2.34
4163 6213 7.118245 CAGTATCTGCACAATCAAACTCAGTAA 59.882 37.037 0.00 0.00 0.00 2.24
4164 6214 6.591448 CAGTATCTGCACAATCAAACTCAGTA 59.409 38.462 0.00 0.00 0.00 2.74
4205 6255 3.036091 CAATCCATGGAAATTGGAGCCT 58.964 45.455 20.67 0.00 46.06 4.58
4583 6634 5.995282 TGATTAAAGAAGAAGCGAACTCCAA 59.005 36.000 0.00 0.00 0.00 3.53
4591 6642 8.733857 AAACTCATTTGATTAAAGAAGAAGCG 57.266 30.769 2.57 0.00 0.00 4.68
4758 6809 5.957168 ACCATAAAACACAATCCCATCATGA 59.043 36.000 0.00 0.00 0.00 3.07
4858 6910 6.070656 ACAGGATTCAAGAAAAGGATGTCAA 58.929 36.000 0.00 0.00 0.00 3.18
4915 6967 7.139896 ACAACGAAAATAACATCAGTGCATA 57.860 32.000 0.00 0.00 0.00 3.14
5109 7161 6.148811 TGAGCGAAAGAGAAATTCCGTTTAAT 59.851 34.615 0.00 0.00 0.00 1.40
5192 7245 6.741992 ATGCAGATCACGAAAGATTAAACA 57.258 33.333 0.00 0.00 0.00 2.83
5205 7258 9.039870 GTATTAGATTGCCTATATGCAGATCAC 57.960 37.037 18.08 9.92 43.21 3.06
5233 7286 5.131475 AGTCAACAGGGTTAGGAACTTTACA 59.869 40.000 0.00 0.00 41.75 2.41
5247 7300 4.340950 ACAACACCAAATTAGTCAACAGGG 59.659 41.667 0.00 0.00 0.00 4.45
5323 7385 7.147811 GGACAATCTACTAGACAAGAGACCAAT 60.148 40.741 0.00 0.00 0.00 3.16
5383 7445 5.696822 GGTTTATGAAAGAGAAACCGAACC 58.303 41.667 0.36 0.00 41.88 3.62
5406 7468 6.472808 GCTAGTCAACCTACGAAATACAGAAG 59.527 42.308 0.00 0.00 0.00 2.85
5408 7470 5.163581 GGCTAGTCAACCTACGAAATACAGA 60.164 44.000 0.00 0.00 0.00 3.41
5409 7471 5.041940 GGCTAGTCAACCTACGAAATACAG 58.958 45.833 0.00 0.00 0.00 2.74
5416 7478 4.226427 TCTAAGGCTAGTCAACCTACGA 57.774 45.455 0.00 0.00 34.31 3.43
5448 7693 8.761575 TTTCATCTGAAAGGAAATTGTTATGC 57.238 30.769 1.28 0.00 38.94 3.14
5481 7755 8.621532 TGCATATTCCAAGCTTAATTACTAGG 57.378 34.615 0.00 0.00 0.00 3.02
5508 7782 9.788960 TCGTCTTGCATATGTATAGTATTCATC 57.211 33.333 5.61 0.00 0.00 2.92
5523 7797 9.516314 GCATATGTATAGTATTCGTCTTGCATA 57.484 33.333 4.29 0.00 0.00 3.14
5524 7798 8.034804 TGCATATGTATAGTATTCGTCTTGCAT 58.965 33.333 4.29 0.00 0.00 3.96
5525 7799 7.375053 TGCATATGTATAGTATTCGTCTTGCA 58.625 34.615 4.29 11.95 0.00 4.08
5526 7800 7.812309 TGCATATGTATAGTATTCGTCTTGC 57.188 36.000 4.29 8.62 0.00 4.01
5527 7801 9.626045 TCTTGCATATGTATAGTATTCGTCTTG 57.374 33.333 4.29 0.00 0.00 3.02
5528 7802 9.627395 GTCTTGCATATGTATAGTATTCGTCTT 57.373 33.333 4.29 0.00 0.00 3.01
5529 7803 7.963465 CGTCTTGCATATGTATAGTATTCGTCT 59.037 37.037 4.29 0.00 0.00 4.18
5530 7804 7.961283 TCGTCTTGCATATGTATAGTATTCGTC 59.039 37.037 4.29 0.00 0.00 4.20
5531 7805 7.813645 TCGTCTTGCATATGTATAGTATTCGT 58.186 34.615 4.29 0.00 0.00 3.85
5532 7806 8.669394 TTCGTCTTGCATATGTATAGTATTCG 57.331 34.615 4.29 0.00 0.00 3.34
5542 7816 8.793592 TGAGTATAGTATTCGTCTTGCATATGT 58.206 33.333 4.29 0.00 0.00 2.29
5543 7817 9.066939 GTGAGTATAGTATTCGTCTTGCATATG 57.933 37.037 0.00 0.00 0.00 1.78
5613 7887 7.556275 TGAGAATAAAGGTCAAAACAACAGACT 59.444 33.333 0.00 0.00 32.98 3.24
5723 8000 7.490079 GTGACATTTTGACATGATATTGCACAT 59.510 33.333 0.00 0.00 0.00 3.21
5756 8034 3.712020 GCAAATGGCGGAATCGAAA 57.288 47.368 0.00 0.00 39.00 3.46
5795 8094 8.442632 TGGTCATCATGATTAGAAACAGAATC 57.557 34.615 5.16 0.00 33.48 2.52
5884 8204 3.243602 ACCGTTTAATTGCCACAGGAAAC 60.244 43.478 0.00 0.00 0.00 2.78
6049 8369 2.661566 CGTGTCAACAGCTGCCTCG 61.662 63.158 15.27 8.33 0.00 4.63
6132 8452 2.281484 TTGCTCGGTGAACCCAGC 60.281 61.111 11.69 11.69 37.67 4.85
6367 8856 6.599244 CAGTTAATAACTCATCACACCACCAT 59.401 38.462 2.14 0.00 40.46 3.55
6448 8966 6.161348 TCCCACATCCCCATCTCTTATAAAAA 59.839 38.462 0.00 0.00 0.00 1.94
6449 8967 5.674496 TCCCACATCCCCATCTCTTATAAAA 59.326 40.000 0.00 0.00 0.00 1.52
6450 8968 5.231552 TCCCACATCCCCATCTCTTATAAA 58.768 41.667 0.00 0.00 0.00 1.40
6451 8969 4.838403 TCCCACATCCCCATCTCTTATAA 58.162 43.478 0.00 0.00 0.00 0.98
6452 8970 4.502036 TCCCACATCCCCATCTCTTATA 57.498 45.455 0.00 0.00 0.00 0.98
6453 8971 3.367280 TCCCACATCCCCATCTCTTAT 57.633 47.619 0.00 0.00 0.00 1.73
6454 8972 2.887454 TCCCACATCCCCATCTCTTA 57.113 50.000 0.00 0.00 0.00 2.10
6455 8973 2.219216 ATCCCACATCCCCATCTCTT 57.781 50.000 0.00 0.00 0.00 2.85
6456 8974 3.181391 TGATATCCCACATCCCCATCTCT 60.181 47.826 0.00 0.00 0.00 3.10
6457 8975 3.054802 GTGATATCCCACATCCCCATCTC 60.055 52.174 0.00 0.00 37.04 2.75
6458 8976 2.915604 GTGATATCCCACATCCCCATCT 59.084 50.000 0.00 0.00 37.04 2.90
6459 8977 2.644299 TGTGATATCCCACATCCCCATC 59.356 50.000 0.00 0.00 41.63 3.51
6460 8978 2.717239 TGTGATATCCCACATCCCCAT 58.283 47.619 0.00 0.00 41.63 4.00
6461 8979 2.204720 TGTGATATCCCACATCCCCA 57.795 50.000 0.00 0.00 41.63 4.96
6462 8980 3.814504 ATTGTGATATCCCACATCCCC 57.185 47.619 0.00 0.00 45.31 4.81
6463 8981 6.542821 TCTTTATTGTGATATCCCACATCCC 58.457 40.000 0.00 0.00 45.31 3.85
6464 8982 9.388506 CTATCTTTATTGTGATATCCCACATCC 57.611 37.037 0.00 0.00 45.31 3.51
6466 8984 9.950496 GTCTATCTTTATTGTGATATCCCACAT 57.050 33.333 0.00 0.00 45.31 3.21
6467 8985 8.375506 GGTCTATCTTTATTGTGATATCCCACA 58.624 37.037 0.00 0.00 44.45 4.17
6468 8986 8.598041 AGGTCTATCTTTATTGTGATATCCCAC 58.402 37.037 0.00 0.00 37.55 4.61
6469 8987 8.742125 AGGTCTATCTTTATTGTGATATCCCA 57.258 34.615 0.00 0.00 0.00 4.37
6470 8988 9.442047 CAAGGTCTATCTTTATTGTGATATCCC 57.558 37.037 0.00 0.00 0.00 3.85
6471 8989 8.940952 GCAAGGTCTATCTTTATTGTGATATCC 58.059 37.037 0.00 0.00 0.00 2.59
6472 8990 9.494271 TGCAAGGTCTATCTTTATTGTGATATC 57.506 33.333 0.00 0.00 0.00 1.63
6474 8992 9.494271 GATGCAAGGTCTATCTTTATTGTGATA 57.506 33.333 0.00 0.00 0.00 2.15
6475 8993 7.172190 CGATGCAAGGTCTATCTTTATTGTGAT 59.828 37.037 0.00 0.00 0.00 3.06
6476 8994 6.479990 CGATGCAAGGTCTATCTTTATTGTGA 59.520 38.462 0.00 0.00 0.00 3.58
6477 8995 6.293081 CCGATGCAAGGTCTATCTTTATTGTG 60.293 42.308 0.00 0.00 0.00 3.33
6478 8996 5.760253 CCGATGCAAGGTCTATCTTTATTGT 59.240 40.000 0.00 0.00 0.00 2.71
6479 8997 5.991606 TCCGATGCAAGGTCTATCTTTATTG 59.008 40.000 10.81 0.00 0.00 1.90
6480 8998 6.174720 TCCGATGCAAGGTCTATCTTTATT 57.825 37.500 10.81 0.00 0.00 1.40
6481 8999 5.808366 TCCGATGCAAGGTCTATCTTTAT 57.192 39.130 10.81 0.00 0.00 1.40
6482 9000 5.808366 ATCCGATGCAAGGTCTATCTTTA 57.192 39.130 10.81 0.00 0.00 1.85
6483 9001 4.696479 ATCCGATGCAAGGTCTATCTTT 57.304 40.909 10.81 0.00 0.00 2.52
6484 9002 4.221703 CCTATCCGATGCAAGGTCTATCTT 59.778 45.833 10.81 0.00 0.00 2.40
6485 9003 3.766591 CCTATCCGATGCAAGGTCTATCT 59.233 47.826 10.81 0.00 0.00 1.98
6486 9004 3.511934 ACCTATCCGATGCAAGGTCTATC 59.488 47.826 10.81 0.00 37.87 2.08
6487 9005 3.511477 ACCTATCCGATGCAAGGTCTAT 58.489 45.455 10.81 1.57 37.87 1.98
6488 9006 2.958818 ACCTATCCGATGCAAGGTCTA 58.041 47.619 10.81 4.64 37.87 2.59
6489 9007 1.794714 ACCTATCCGATGCAAGGTCT 58.205 50.000 10.81 3.84 37.87 3.85
6490 9008 3.963428 ATACCTATCCGATGCAAGGTC 57.037 47.619 8.77 0.00 41.44 3.85
6491 9009 4.348168 AGAAATACCTATCCGATGCAAGGT 59.652 41.667 10.27 10.27 44.47 3.50
6492 9010 4.899502 AGAAATACCTATCCGATGCAAGG 58.100 43.478 5.31 5.31 35.14 3.61
6578 9096 6.993079 ACTACCATTTCTTTTCAAATCCACC 58.007 36.000 0.00 0.00 0.00 4.61
6737 9255 6.129352 GCTTTAATGTGTTCTTCTTGCTTTCG 60.129 38.462 0.00 0.00 0.00 3.46
6991 9709 8.787852 GGTTCAAACTCTAATTCAAGATGAAGT 58.212 33.333 0.00 0.00 40.05 3.01
7044 9762 5.482908 AGAACATATCAGGTGTGACTCAAC 58.517 41.667 0.00 0.00 34.75 3.18
7052 9770 7.928706 GTGCTAAATAGAGAACATATCAGGTGT 59.071 37.037 0.00 0.00 0.00 4.16
7416 10145 8.434589 AGGGATGATAAAAGGAAAAATGAACA 57.565 30.769 0.00 0.00 0.00 3.18
7439 10168 4.261825 GCATACCAACAGCTAGAGTCTAGG 60.262 50.000 25.20 13.92 0.00 3.02
7551 10289 5.296780 TCAACATGGAAGAAACTGAGTTCAC 59.703 40.000 0.00 0.00 0.00 3.18
7552 10290 5.436175 TCAACATGGAAGAAACTGAGTTCA 58.564 37.500 0.00 0.00 0.00 3.18
7553 10291 6.376978 CATCAACATGGAAGAAACTGAGTTC 58.623 40.000 0.00 0.00 0.00 3.01
7554 10292 5.278660 GCATCAACATGGAAGAAACTGAGTT 60.279 40.000 0.00 0.00 0.00 3.01
7614 10354 4.489306 AGGAGTAATTGACTAGTTGGCC 57.511 45.455 0.00 0.00 39.06 5.36
7673 10428 6.650120 TGGTATTCCATTGGTTCTCTCTTAC 58.350 40.000 1.86 0.00 39.03 2.34
7681 10437 8.962679 TGTTAATTACTGGTATTCCATTGGTTC 58.037 33.333 1.86 0.00 43.43 3.62
7683 10439 9.487442 AATGTTAATTACTGGTATTCCATTGGT 57.513 29.630 1.86 0.00 43.43 3.67
7709 10465 7.559335 AGTTGCCTAATCTGTATATGGATGA 57.441 36.000 0.00 0.00 0.00 2.92
7719 10477 3.437049 GCTTCGAAAGTTGCCTAATCTGT 59.563 43.478 0.00 0.00 0.00 3.41
7874 10632 4.748600 GGAGTAAAGGTGAACACACACTAC 59.251 45.833 7.25 1.78 40.22 2.73
7919 10677 9.194972 TCAGCTATATATGACCCTCAGAATAAG 57.805 37.037 0.00 0.00 0.00 1.73
7921 10679 9.720874 AATCAGCTATATATGACCCTCAGAATA 57.279 33.333 0.00 0.00 0.00 1.75
7922 10680 8.621126 AATCAGCTATATATGACCCTCAGAAT 57.379 34.615 0.00 0.00 0.00 2.40
7923 10681 7.898100 AGAATCAGCTATATATGACCCTCAGAA 59.102 37.037 0.00 0.00 0.00 3.02
7925 10683 7.658525 AGAATCAGCTATATATGACCCTCAG 57.341 40.000 0.00 0.00 0.00 3.35
7928 10695 8.677870 AGAAAGAATCAGCTATATATGACCCT 57.322 34.615 0.00 0.00 0.00 4.34
7932 10699 8.253810 CGGGAAGAAAGAATCAGCTATATATGA 58.746 37.037 0.00 0.00 0.00 2.15
7952 10719 9.804758 GAATATAATATGACCTAGAACGGGAAG 57.195 37.037 0.00 0.00 0.00 3.46
8055 10827 1.303643 CAGCAGAAAGGTGTCCCCC 60.304 63.158 0.00 0.00 40.80 5.40
8305 11083 9.287373 AGCATTTATTCCATTTTGTCAAACATT 57.713 25.926 0.00 0.00 0.00 2.71
8332 11110 3.392285 TCCCAGAACTCCACATATCATGG 59.608 47.826 0.00 0.00 38.71 3.66
8342 11120 4.026744 CTCAACTCTATCCCAGAACTCCA 58.973 47.826 0.00 0.00 31.12 3.86
8343 11121 4.282496 TCTCAACTCTATCCCAGAACTCC 58.718 47.826 0.00 0.00 31.12 3.85
8370 11148 9.971744 GATGCATTACATACAAATTTGGAAAAC 57.028 29.630 21.74 3.59 39.84 2.43
8417 11195 5.702865 CTCGAAATGAGCAAGAATGGAAAA 58.297 37.500 0.00 0.00 38.03 2.29
8419 11197 4.952262 CTCGAAATGAGCAAGAATGGAA 57.048 40.909 0.00 0.00 38.03 3.53
8465 11244 1.039068 CAGCACCCTGAGATCGAGAT 58.961 55.000 0.00 0.00 41.77 2.75
8466 11245 1.039785 CCAGCACCCTGAGATCGAGA 61.040 60.000 0.00 0.00 41.77 4.04
8467 11246 1.326213 ACCAGCACCCTGAGATCGAG 61.326 60.000 0.00 0.00 41.77 4.04
8468 11247 1.305297 ACCAGCACCCTGAGATCGA 60.305 57.895 0.00 0.00 41.77 3.59
8469 11248 1.142748 GACCAGCACCCTGAGATCG 59.857 63.158 0.00 0.00 41.77 3.69
8470 11249 0.835941 ATGACCAGCACCCTGAGATC 59.164 55.000 0.00 0.00 41.77 2.75
8574 11353 5.956563 ACGGGAATATTAGGGGTAGATAGTG 59.043 44.000 0.00 0.00 0.00 2.74
8582 11361 2.766736 TCACACGGGAATATTAGGGGT 58.233 47.619 0.00 0.00 0.00 4.95
8592 11371 1.131303 ACCCCAAGATCACACGGGAA 61.131 55.000 12.61 0.00 41.62 3.97
8639 11418 2.097466 CGTTGATTGGTCATTACTGGGC 59.903 50.000 0.00 0.00 33.56 5.36
8649 11428 4.058817 AGTTTGTCTCTCGTTGATTGGTC 58.941 43.478 0.00 0.00 0.00 4.02
8651 11430 5.869344 TCATAGTTTGTCTCTCGTTGATTGG 59.131 40.000 0.00 0.00 0.00 3.16
8670 11449 6.624423 CCCAATGGTGTTCTTTTTCTCATAG 58.376 40.000 0.00 0.00 0.00 2.23
8671 11450 5.047377 GCCCAATGGTGTTCTTTTTCTCATA 60.047 40.000 0.00 0.00 0.00 2.15
8672 11451 4.262592 GCCCAATGGTGTTCTTTTTCTCAT 60.263 41.667 0.00 0.00 0.00 2.90
8673 11452 3.069443 GCCCAATGGTGTTCTTTTTCTCA 59.931 43.478 0.00 0.00 0.00 3.27
8674 11453 3.321968 AGCCCAATGGTGTTCTTTTTCTC 59.678 43.478 0.00 0.00 0.00 2.87
8675 11454 3.070015 CAGCCCAATGGTGTTCTTTTTCT 59.930 43.478 0.00 0.00 37.69 2.52
8676 11455 3.392882 CAGCCCAATGGTGTTCTTTTTC 58.607 45.455 0.00 0.00 37.69 2.29
8677 11456 2.104622 CCAGCCCAATGGTGTTCTTTTT 59.895 45.455 0.00 0.00 40.95 1.94
8678 11457 1.693606 CCAGCCCAATGGTGTTCTTTT 59.306 47.619 0.00 0.00 40.95 2.27
8679 11458 1.341080 CCAGCCCAATGGTGTTCTTT 58.659 50.000 0.00 0.00 40.95 2.52
8680 11459 1.187567 GCCAGCCCAATGGTGTTCTT 61.188 55.000 0.00 0.00 42.75 2.52
8681 11460 1.607467 GCCAGCCCAATGGTGTTCT 60.607 57.895 0.00 0.00 42.75 3.01
8682 11461 2.649129 GGCCAGCCCAATGGTGTTC 61.649 63.158 0.00 0.00 42.75 3.18
8683 11462 1.799157 TAGGCCAGCCCAATGGTGTT 61.799 55.000 5.01 0.00 42.75 3.32
8684 11463 1.799157 TTAGGCCAGCCCAATGGTGT 61.799 55.000 5.01 0.00 42.75 4.16
8685 11464 1.000233 TTAGGCCAGCCCAATGGTG 60.000 57.895 5.01 0.00 42.75 4.17
8686 11465 1.000359 GTTAGGCCAGCCCAATGGT 60.000 57.895 5.01 0.00 42.75 3.55
8687 11466 1.758122 GGTTAGGCCAGCCCAATGG 60.758 63.158 5.01 0.00 43.72 3.16
8688 11467 1.000233 TGGTTAGGCCAGCCCAATG 60.000 57.895 5.01 0.00 43.61 2.82
8689 11468 3.519291 TGGTTAGGCCAGCCCAAT 58.481 55.556 5.01 0.00 43.61 3.16
8696 11475 1.682005 GCCATGCTTGGTTAGGCCA 60.682 57.895 19.05 0.00 45.57 5.36
8697 11476 2.774799 CGCCATGCTTGGTTAGGCC 61.775 63.158 19.05 0.00 45.57 5.19
8698 11477 2.774799 CCGCCATGCTTGGTTAGGC 61.775 63.158 19.05 4.34 45.57 3.93
8699 11478 2.774799 GCCGCCATGCTTGGTTAGG 61.775 63.158 19.05 18.84 45.57 2.69
8700 11479 2.774799 GGCCGCCATGCTTGGTTAG 61.775 63.158 19.05 11.09 45.57 2.34
8701 11480 2.753849 GGCCGCCATGCTTGGTTA 60.754 61.111 19.05 0.00 45.57 2.85
8702 11481 4.992740 TGGCCGCCATGCTTGGTT 62.993 61.111 19.05 0.00 45.57 3.67
8703 11482 4.992740 TTGGCCGCCATGCTTGGT 62.993 61.111 14.30 0.00 45.57 3.67
8704 11483 4.440127 GTTGGCCGCCATGCTTGG 62.440 66.667 14.30 14.22 46.66 3.61
8705 11484 4.440127 GGTTGGCCGCCATGCTTG 62.440 66.667 14.30 0.00 31.53 4.01
8713 11492 2.879813 TATCTTTCGGGGTTGGCCGC 62.880 60.000 0.00 0.00 43.52 6.53
8714 11493 0.393267 TTATCTTTCGGGGTTGGCCG 60.393 55.000 0.00 0.00 34.97 6.13
8715 11494 1.749063 CTTTATCTTTCGGGGTTGGCC 59.251 52.381 0.00 0.00 0.00 5.36
8716 11495 1.134367 GCTTTATCTTTCGGGGTTGGC 59.866 52.381 0.00 0.00 0.00 4.52
8717 11496 1.400494 CGCTTTATCTTTCGGGGTTGG 59.600 52.381 0.00 0.00 0.00 3.77
8718 11497 2.081462 ACGCTTTATCTTTCGGGGTTG 58.919 47.619 0.00 0.00 0.00 3.77
8719 11498 2.081462 CACGCTTTATCTTTCGGGGTT 58.919 47.619 0.00 0.00 0.00 4.11
8720 11499 1.734163 CACGCTTTATCTTTCGGGGT 58.266 50.000 0.00 0.00 0.00 4.95
8721 11500 0.377203 GCACGCTTTATCTTTCGGGG 59.623 55.000 0.00 0.00 0.00 5.73
8722 11501 1.369625 AGCACGCTTTATCTTTCGGG 58.630 50.000 0.00 0.00 0.00 5.14
8723 11502 3.163594 CAAAGCACGCTTTATCTTTCGG 58.836 45.455 16.18 0.00 43.56 4.30
8724 11503 2.589841 GCAAAGCACGCTTTATCTTTCG 59.410 45.455 16.18 4.36 43.56 3.46
8725 11504 3.564511 TGCAAAGCACGCTTTATCTTTC 58.435 40.909 16.18 3.73 43.56 2.62
8726 11505 3.641437 TGCAAAGCACGCTTTATCTTT 57.359 38.095 16.18 0.00 43.56 2.52
8727 11506 3.568538 CTTGCAAAGCACGCTTTATCTT 58.431 40.909 16.18 0.00 43.56 2.40
8728 11507 3.207474 CTTGCAAAGCACGCTTTATCT 57.793 42.857 16.18 0.00 43.56 1.98
8741 11520 1.065401 CGAGGCTCACAAACTTGCAAA 59.935 47.619 15.95 0.00 0.00 3.68
8742 11521 0.662619 CGAGGCTCACAAACTTGCAA 59.337 50.000 15.95 0.00 0.00 4.08
8743 11522 0.179059 TCGAGGCTCACAAACTTGCA 60.179 50.000 15.95 0.00 0.00 4.08
8744 11523 1.160137 ATCGAGGCTCACAAACTTGC 58.840 50.000 15.95 0.00 0.00 4.01
8745 11524 5.122239 TCAAATATCGAGGCTCACAAACTTG 59.878 40.000 15.95 10.02 0.00 3.16
8746 11525 5.245531 TCAAATATCGAGGCTCACAAACTT 58.754 37.500 15.95 0.00 0.00 2.66
8747 11526 4.832248 TCAAATATCGAGGCTCACAAACT 58.168 39.130 15.95 0.00 0.00 2.66
8748 11527 4.494855 GCTCAAATATCGAGGCTCACAAAC 60.495 45.833 15.95 0.00 0.00 2.93
8749 11528 3.623060 GCTCAAATATCGAGGCTCACAAA 59.377 43.478 15.95 0.00 0.00 2.83
8750 11529 3.118629 AGCTCAAATATCGAGGCTCACAA 60.119 43.478 15.95 0.00 0.00 3.33
8751 11530 2.432146 AGCTCAAATATCGAGGCTCACA 59.568 45.455 15.95 0.00 0.00 3.58
8752 11531 3.056304 GAGCTCAAATATCGAGGCTCAC 58.944 50.000 15.95 0.00 35.52 3.51
8753 11532 2.036475 GGAGCTCAAATATCGAGGCTCA 59.964 50.000 17.19 2.07 36.35 4.26
8754 11533 2.298729 AGGAGCTCAAATATCGAGGCTC 59.701 50.000 17.19 3.87 35.10 4.70
8755 11534 2.324541 AGGAGCTCAAATATCGAGGCT 58.675 47.619 17.19 0.00 0.00 4.58
8756 11535 2.829741 AGGAGCTCAAATATCGAGGC 57.170 50.000 17.19 0.00 0.00 4.70
8757 11536 6.931281 TGAATTTAGGAGCTCAAATATCGAGG 59.069 38.462 17.19 0.00 0.00 4.63
8758 11537 7.953158 TGAATTTAGGAGCTCAAATATCGAG 57.047 36.000 17.19 0.00 0.00 4.04
8759 11538 8.150296 TCATGAATTTAGGAGCTCAAATATCGA 58.850 33.333 17.19 6.44 0.00 3.59
8760 11539 8.226448 GTCATGAATTTAGGAGCTCAAATATCG 58.774 37.037 17.19 4.45 0.00 2.92
8761 11540 9.282569 AGTCATGAATTTAGGAGCTCAAATATC 57.717 33.333 17.19 12.98 0.00 1.63
8762 11541 9.638176 AAGTCATGAATTTAGGAGCTCAAATAT 57.362 29.630 17.19 2.94 0.00 1.28
8764 11543 7.951347 AAGTCATGAATTTAGGAGCTCAAAT 57.049 32.000 17.19 10.94 0.00 2.32
8765 11544 9.466497 AATAAGTCATGAATTTAGGAGCTCAAA 57.534 29.630 14.34 8.90 0.00 2.69
8766 11545 9.466497 AAATAAGTCATGAATTTAGGAGCTCAA 57.534 29.630 14.34 1.16 0.00 3.02
8767 11546 9.466497 AAAATAAGTCATGAATTTAGGAGCTCA 57.534 29.630 14.34 0.00 0.00 4.26
8793 11572 9.944376 AGTATAAGTCTGCTTTTGAAATCTGTA 57.056 29.630 0.00 0.00 36.22 2.74
8794 11573 8.725148 CAGTATAAGTCTGCTTTTGAAATCTGT 58.275 33.333 0.00 0.00 36.22 3.41
8795 11574 8.725148 ACAGTATAAGTCTGCTTTTGAAATCTG 58.275 33.333 0.00 0.00 36.50 2.90
8796 11575 8.854614 ACAGTATAAGTCTGCTTTTGAAATCT 57.145 30.769 0.00 0.00 36.50 2.40
8799 11578 9.772973 TCTTACAGTATAAGTCTGCTTTTGAAA 57.227 29.630 0.00 0.00 36.50 2.69
8800 11579 9.944376 ATCTTACAGTATAAGTCTGCTTTTGAA 57.056 29.630 0.00 0.00 36.50 2.69
8801 11580 9.944376 AATCTTACAGTATAAGTCTGCTTTTGA 57.056 29.630 0.00 0.00 36.50 2.69
8804 11583 9.944376 TGAAATCTTACAGTATAAGTCTGCTTT 57.056 29.630 0.00 0.00 36.50 3.51
8806 11585 9.539825 CATGAAATCTTACAGTATAAGTCTGCT 57.460 33.333 0.00 0.00 36.50 4.24
8807 11586 8.279103 GCATGAAATCTTACAGTATAAGTCTGC 58.721 37.037 0.00 0.00 36.50 4.26
8808 11587 9.317936 TGCATGAAATCTTACAGTATAAGTCTG 57.682 33.333 0.00 0.00 38.68 3.51
8809 11588 9.319143 GTGCATGAAATCTTACAGTATAAGTCT 57.681 33.333 0.00 0.00 0.00 3.24
8810 11589 9.098355 TGTGCATGAAATCTTACAGTATAAGTC 57.902 33.333 0.00 0.00 0.00 3.01
8811 11590 9.448438 TTGTGCATGAAATCTTACAGTATAAGT 57.552 29.630 0.00 0.00 0.00 2.24
8833 11612 3.975992 GAGCTACGGTGCAATTGTG 57.024 52.632 7.40 0.00 34.99 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.