Multiple sequence alignment - TraesCS1D01G392600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G392600 chr1D 100.000 3401 0 0 1 3401 462486764 462490164 0.000000e+00 6281.0
1 TraesCS1D01G392600 chr1D 81.375 1353 218 22 990 2324 462719054 462717718 0.000000e+00 1072.0
2 TraesCS1D01G392600 chr1D 81.159 1104 191 14 1241 2334 462730360 462729264 0.000000e+00 870.0
3 TraesCS1D01G392600 chr1D 75.876 1513 290 52 894 2365 462714250 462715728 0.000000e+00 702.0
4 TraesCS1D01G392600 chr1D 80.590 407 47 14 661 1064 462395814 462396191 5.550000e-73 285.0
5 TraesCS1D01G392600 chr1D 89.189 222 13 6 273 492 462395366 462395578 2.010000e-67 267.0
6 TraesCS1D01G392600 chr1D 78.210 257 47 7 1001 1248 462736698 462736442 4.540000e-34 156.0
7 TraesCS1D01G392600 chr1B 94.100 3068 103 37 76 3114 637620865 637623883 0.000000e+00 4591.0
8 TraesCS1D01G392600 chr1B 85.206 1602 209 17 813 2394 637525347 637523754 0.000000e+00 1620.0
9 TraesCS1D01G392600 chr1B 85.122 1593 215 18 813 2393 663611626 663610044 0.000000e+00 1609.0
10 TraesCS1D01G392600 chr1B 80.538 1264 236 7 1077 2334 637825370 637824111 0.000000e+00 963.0
11 TraesCS1D01G392600 chr1B 78.366 1530 273 38 870 2371 637815812 637817311 0.000000e+00 939.0
12 TraesCS1D01G392600 chr1B 87.571 354 25 11 299 643 637526014 637525671 3.180000e-105 392.0
13 TraesCS1D01G392600 chr1B 98.026 152 2 1 3251 3401 637624107 637624258 2.600000e-66 263.0
14 TraesCS1D01G392600 chr1B 80.220 364 38 17 150 494 663612287 663611939 3.390000e-60 243.0
15 TraesCS1D01G392600 chr1B 87.879 132 10 3 515 643 663611955 663611827 2.110000e-32 150.0
16 TraesCS1D01G392600 chr1B 97.778 45 1 0 3209 3253 637623881 637623925 1.010000e-10 78.7
17 TraesCS1D01G392600 chr1A 84.552 1573 212 18 810 2361 554221562 554223124 0.000000e+00 1530.0
18 TraesCS1D01G392600 chr1A 81.245 1205 210 13 1129 2324 554526203 554525006 0.000000e+00 959.0
19 TraesCS1D01G392600 chr1A 90.816 196 10 3 299 493 554214838 554215026 4.360000e-64 255.0
20 TraesCS1D01G392600 chr1A 86.620 142 13 3 505 643 554221209 554221347 5.880000e-33 152.0
21 TraesCS1D01G392600 chr4B 76.282 312 63 9 2016 2320 608827025 608827332 4.540000e-34 156.0
22 TraesCS1D01G392600 chr4D 74.359 312 69 9 2016 2320 480854310 480854617 4.610000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G392600 chr1D 462486764 462490164 3400 False 6281.000000 6281 100.000000 1 3401 1 chr1D.!!$F1 3400
1 TraesCS1D01G392600 chr1D 462717718 462719054 1336 True 1072.000000 1072 81.375000 990 2324 1 chr1D.!!$R1 1334
2 TraesCS1D01G392600 chr1D 462729264 462730360 1096 True 870.000000 870 81.159000 1241 2334 1 chr1D.!!$R2 1093
3 TraesCS1D01G392600 chr1D 462714250 462715728 1478 False 702.000000 702 75.876000 894 2365 1 chr1D.!!$F2 1471
4 TraesCS1D01G392600 chr1D 462395366 462396191 825 False 276.000000 285 84.889500 273 1064 2 chr1D.!!$F3 791
5 TraesCS1D01G392600 chr1B 637620865 637624258 3393 False 1644.233333 4591 96.634667 76 3401 3 chr1B.!!$F2 3325
6 TraesCS1D01G392600 chr1B 637523754 637526014 2260 True 1006.000000 1620 86.388500 299 2394 2 chr1B.!!$R2 2095
7 TraesCS1D01G392600 chr1B 637824111 637825370 1259 True 963.000000 963 80.538000 1077 2334 1 chr1B.!!$R1 1257
8 TraesCS1D01G392600 chr1B 637815812 637817311 1499 False 939.000000 939 78.366000 870 2371 1 chr1B.!!$F1 1501
9 TraesCS1D01G392600 chr1B 663610044 663612287 2243 True 667.333333 1609 84.407000 150 2393 3 chr1B.!!$R3 2243
10 TraesCS1D01G392600 chr1A 554525006 554526203 1197 True 959.000000 959 81.245000 1129 2324 1 chr1A.!!$R1 1195
11 TraesCS1D01G392600 chr1A 554221209 554223124 1915 False 841.000000 1530 85.586000 505 2361 2 chr1A.!!$F2 1856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 178 0.036388 ATGTCAAATCGGACGCCTGT 60.036 50.0 0.00 0.0 40.72 4.00 F
1389 1933 0.036952 CCATTGACTCTGCACGTCCT 60.037 55.0 8.48 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 2402 0.320421 CAGAACGGTGGTGAACGGAT 60.320 55.0 0.0 0.0 33.48 4.18 R
2618 3187 0.033366 GCAAAACTGAACCGCCCAAT 59.967 50.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.890424 AATATTATAACCATTTCCCGCGG 57.110 39.130 21.04 21.04 0.00 6.46
34 35 1.310904 TTATAACCATTTCCCGCGGC 58.689 50.000 22.85 0.00 0.00 6.53
35 36 0.180642 TATAACCATTTCCCGCGGCA 59.819 50.000 22.85 0.00 0.00 5.69
36 37 0.681564 ATAACCATTTCCCGCGGCAA 60.682 50.000 22.85 9.29 0.00 4.52
37 38 1.587933 TAACCATTTCCCGCGGCAAC 61.588 55.000 22.85 0.00 0.00 4.17
61 62 5.975410 CGGGAGCTCTAGTAATTTGAAAG 57.025 43.478 14.64 0.00 0.00 2.62
62 63 5.661458 CGGGAGCTCTAGTAATTTGAAAGA 58.339 41.667 14.64 0.00 0.00 2.52
63 64 6.106673 CGGGAGCTCTAGTAATTTGAAAGAA 58.893 40.000 14.64 0.00 0.00 2.52
64 65 6.594159 CGGGAGCTCTAGTAATTTGAAAGAAA 59.406 38.462 14.64 0.00 0.00 2.52
65 66 7.119262 CGGGAGCTCTAGTAATTTGAAAGAAAA 59.881 37.037 14.64 0.00 0.00 2.29
66 67 8.793592 GGGAGCTCTAGTAATTTGAAAGAAAAA 58.206 33.333 14.64 0.00 0.00 1.94
95 96 6.429151 AGTTGTAACTAATTACCCCAATCCC 58.571 40.000 0.00 0.00 40.12 3.85
96 97 5.038651 TGTAACTAATTACCCCAATCCCG 57.961 43.478 0.00 0.00 40.12 5.14
124 125 4.950434 AATGTAATTAACGACAACGGGG 57.050 40.909 0.00 0.00 38.26 5.73
171 178 0.036388 ATGTCAAATCGGACGCCTGT 60.036 50.000 0.00 0.00 40.72 4.00
196 210 1.404181 GCATGCCGACAGACTACAGAA 60.404 52.381 6.36 0.00 0.00 3.02
205 219 2.818432 ACAGACTACAGAAATCGGACGT 59.182 45.455 0.00 0.00 0.00 4.34
206 220 3.255149 ACAGACTACAGAAATCGGACGTT 59.745 43.478 0.00 0.00 0.00 3.99
209 223 2.559668 ACTACAGAAATCGGACGTTCCA 59.440 45.455 0.00 0.00 35.91 3.53
293 318 1.446016 AATAATCCCCTTCCCCTCGG 58.554 55.000 0.00 0.00 0.00 4.63
353 379 4.634133 CGCCGAGCCGCCGTAATA 62.634 66.667 0.00 0.00 0.00 0.98
354 380 2.279650 GCCGAGCCGCCGTAATAA 60.280 61.111 0.00 0.00 0.00 1.40
493 525 3.351794 TCTCCTTCTGCTCTCGTCTTA 57.648 47.619 0.00 0.00 0.00 2.10
569 688 9.080097 TCTGATCCCTTCTATTTTAGTACTAGC 57.920 37.037 2.23 0.00 0.00 3.42
669 884 5.355630 TCAGATAGTGTCACTAAGAGCAGTC 59.644 44.000 16.50 7.90 33.89 3.51
673 888 5.220710 AGTGTCACTAAGAGCAGTCATTT 57.779 39.130 2.87 0.00 0.00 2.32
677 892 7.880195 AGTGTCACTAAGAGCAGTCATTTTATT 59.120 33.333 2.87 0.00 0.00 1.40
678 893 8.171840 GTGTCACTAAGAGCAGTCATTTTATTC 58.828 37.037 0.00 0.00 0.00 1.75
679 894 8.097038 TGTCACTAAGAGCAGTCATTTTATTCT 58.903 33.333 0.00 0.00 0.00 2.40
735 950 3.243068 GCCTCTTCGCTTCAAAAGAAACA 60.243 43.478 0.00 0.00 31.45 2.83
738 953 5.499139 TCTTCGCTTCAAAAGAAACACAT 57.501 34.783 0.00 0.00 0.00 3.21
746 961 7.059945 CGCTTCAAAAGAAACACATATCTGTTC 59.940 37.037 0.00 0.00 33.03 3.18
777 992 1.004440 AGGCGAGTCCTGCAACTTC 60.004 57.895 0.00 0.00 45.54 3.01
778 993 1.004440 GGCGAGTCCTGCAACTTCT 60.004 57.895 0.00 0.00 0.00 2.85
867 1371 7.170393 AGTTTGGGATTAAATTCTGCTTACC 57.830 36.000 0.00 0.00 0.00 2.85
868 1372 6.954102 AGTTTGGGATTAAATTCTGCTTACCT 59.046 34.615 0.00 0.00 0.00 3.08
1185 1708 3.420893 TGTCAAATCCATTCTCCGCTTT 58.579 40.909 0.00 0.00 0.00 3.51
1389 1933 0.036952 CCATTGACTCTGCACGTCCT 60.037 55.000 8.48 0.00 0.00 3.85
1390 1934 1.073964 CATTGACTCTGCACGTCCTG 58.926 55.000 8.48 3.82 0.00 3.86
1849 2402 0.631753 AGAGGAGACCTTCGGATCCA 59.368 55.000 13.41 0.00 35.59 3.41
2004 2560 0.993509 CCCTGGAGATTTGGGGGCTA 60.994 60.000 0.00 0.00 37.37 3.93
2484 3053 5.992217 GGATATCAGTTAGCTGGTTTCGAAT 59.008 40.000 6.75 0.00 42.78 3.34
2489 3058 3.498397 AGTTAGCTGGTTTCGAATGTGTG 59.502 43.478 0.00 0.00 0.00 3.82
2499 3068 0.168788 CGAATGTGTGCGGCAGAAAT 59.831 50.000 1.18 0.00 0.00 2.17
2561 3130 2.501723 AGCTACATGAAGAATCGGGTGT 59.498 45.455 0.00 0.00 0.00 4.16
2593 3162 8.663911 TGTTTTGCTTTGTTCTAAAATTTGAGG 58.336 29.630 2.56 0.00 0.00 3.86
2635 3204 6.379988 AGAAATATATTGGGCGGTTCAGTTTT 59.620 34.615 0.00 0.00 0.00 2.43
2687 3256 5.133941 AGTTCCTTCTTGAAGTTCTTTCCC 58.866 41.667 4.17 0.00 34.77 3.97
2694 3263 7.308830 CCTTCTTGAAGTTCTTTCCCAATACAG 60.309 40.741 4.17 0.00 34.77 2.74
2704 3273 1.964933 TCCCAATACAGTCGTCACACA 59.035 47.619 0.00 0.00 0.00 3.72
2705 3274 2.365941 TCCCAATACAGTCGTCACACAA 59.634 45.455 0.00 0.00 0.00 3.33
2706 3275 3.007506 TCCCAATACAGTCGTCACACAAT 59.992 43.478 0.00 0.00 0.00 2.71
2707 3276 4.221041 TCCCAATACAGTCGTCACACAATA 59.779 41.667 0.00 0.00 0.00 1.90
2742 3311 4.009675 TCTGATTTGGTTGCATACTGTCC 58.990 43.478 0.00 0.00 0.00 4.02
2748 3317 7.445096 TGATTTGGTTGCATACTGTCCATATAG 59.555 37.037 0.00 0.00 0.00 1.31
2763 3332 8.533569 TGTCCATATAGTCTTACATCTGAACA 57.466 34.615 0.00 0.00 0.00 3.18
2785 3354 1.533625 TTTCCCTGCAAGAATCACCG 58.466 50.000 0.01 0.00 34.07 4.94
2808 3377 2.704572 AGCAACTGCATTGTACTCCTC 58.295 47.619 4.22 0.00 45.16 3.71
2815 3384 2.094182 TGCATTGTACTCCTCGAGAACC 60.094 50.000 15.71 0.00 33.32 3.62
2816 3385 2.094182 GCATTGTACTCCTCGAGAACCA 60.094 50.000 15.71 0.00 33.32 3.67
2856 3425 4.332637 CACTGTGCTGCAACCGCC 62.333 66.667 2.77 0.00 37.32 6.13
2890 3459 5.940470 CCTGCCAACATAGAATAATACTCCC 59.060 44.000 0.00 0.00 0.00 4.30
2891 3460 6.240002 CCTGCCAACATAGAATAATACTCCCT 60.240 42.308 0.00 0.00 0.00 4.20
2892 3461 6.769512 TGCCAACATAGAATAATACTCCCTC 58.230 40.000 0.00 0.00 0.00 4.30
2894 3463 7.733047 TGCCAACATAGAATAATACTCCCTCTA 59.267 37.037 0.00 0.00 0.00 2.43
2895 3464 8.763601 GCCAACATAGAATAATACTCCCTCTAT 58.236 37.037 0.00 0.00 31.06 1.98
2939 3512 7.549147 TTACAAGTTACAGAGGGAGTATGTT 57.451 36.000 0.00 0.00 31.40 2.71
2956 3529 2.217750 TGTTGAGAATGACACGGTTGG 58.782 47.619 0.00 0.00 0.00 3.77
2997 3570 7.602517 AATACAGTAAGATGAGACAAAGTGC 57.397 36.000 0.00 0.00 0.00 4.40
3030 3603 7.954788 TCTTTTGCTGTTTTGTTTGTTAGTT 57.045 28.000 0.00 0.00 0.00 2.24
3064 3637 2.191128 AATGGGCACTCTCAACTGAC 57.809 50.000 0.00 0.00 0.00 3.51
3087 3660 7.107639 ACCCAAAGTATATGGTGCAAATTAC 57.892 36.000 0.00 0.00 36.14 1.89
3113 3686 6.563567 CGAGCTGCACTTATCTTTGTATGATG 60.564 42.308 1.02 0.00 0.00 3.07
3114 3687 5.530171 AGCTGCACTTATCTTTGTATGATGG 59.470 40.000 1.02 0.00 0.00 3.51
3115 3688 5.278169 GCTGCACTTATCTTTGTATGATGGG 60.278 44.000 0.00 0.00 0.00 4.00
3116 3689 4.580167 TGCACTTATCTTTGTATGATGGGC 59.420 41.667 0.00 0.00 0.00 5.36
3117 3690 4.022849 GCACTTATCTTTGTATGATGGGCC 60.023 45.833 0.00 0.00 0.00 5.80
3118 3691 5.380043 CACTTATCTTTGTATGATGGGCCT 58.620 41.667 4.53 0.00 0.00 5.19
3119 3692 5.829924 CACTTATCTTTGTATGATGGGCCTT 59.170 40.000 4.53 0.00 0.00 4.35
3120 3693 6.322201 CACTTATCTTTGTATGATGGGCCTTT 59.678 38.462 4.53 0.00 0.00 3.11
3121 3694 6.322201 ACTTATCTTTGTATGATGGGCCTTTG 59.678 38.462 4.53 0.00 0.00 2.77
3122 3695 2.760092 TCTTTGTATGATGGGCCTTTGC 59.240 45.455 4.53 0.00 0.00 3.68
3123 3696 2.530460 TTGTATGATGGGCCTTTGCT 57.470 45.000 4.53 0.00 37.74 3.91
3124 3697 2.530460 TGTATGATGGGCCTTTGCTT 57.470 45.000 4.53 0.00 37.74 3.91
3125 3698 2.101783 TGTATGATGGGCCTTTGCTTG 58.898 47.619 4.53 0.00 37.74 4.01
3126 3699 2.102578 GTATGATGGGCCTTTGCTTGT 58.897 47.619 4.53 0.00 37.74 3.16
3127 3700 1.648116 ATGATGGGCCTTTGCTTGTT 58.352 45.000 4.53 0.00 37.74 2.83
3128 3701 1.422531 TGATGGGCCTTTGCTTGTTT 58.577 45.000 4.53 0.00 37.74 2.83
3129 3702 1.767681 TGATGGGCCTTTGCTTGTTTT 59.232 42.857 4.53 0.00 37.74 2.43
3130 3703 2.172293 TGATGGGCCTTTGCTTGTTTTT 59.828 40.909 4.53 0.00 37.74 1.94
3131 3704 2.323968 TGGGCCTTTGCTTGTTTTTC 57.676 45.000 4.53 0.00 37.74 2.29
3132 3705 1.556911 TGGGCCTTTGCTTGTTTTTCA 59.443 42.857 4.53 0.00 37.74 2.69
3133 3706 2.026822 TGGGCCTTTGCTTGTTTTTCAA 60.027 40.909 4.53 0.00 37.74 2.69
3155 3728 9.823647 TTCAAGGTATTATGTCTTCTTCTCATC 57.176 33.333 0.00 0.00 0.00 2.92
3156 3729 8.138074 TCAAGGTATTATGTCTTCTTCTCATCG 58.862 37.037 0.00 0.00 0.00 3.84
3157 3730 6.987386 AGGTATTATGTCTTCTTCTCATCGG 58.013 40.000 0.00 0.00 0.00 4.18
3158 3731 6.778069 AGGTATTATGTCTTCTTCTCATCGGA 59.222 38.462 0.00 0.00 0.00 4.55
3159 3732 7.453126 AGGTATTATGTCTTCTTCTCATCGGAT 59.547 37.037 0.00 0.00 0.00 4.18
3160 3733 8.740906 GGTATTATGTCTTCTTCTCATCGGATA 58.259 37.037 0.00 0.00 0.00 2.59
3161 3734 9.781834 GTATTATGTCTTCTTCTCATCGGATAG 57.218 37.037 0.00 0.00 0.00 2.08
3162 3735 5.720371 ATGTCTTCTTCTCATCGGATAGG 57.280 43.478 0.00 0.00 0.00 2.57
3163 3736 3.891977 TGTCTTCTTCTCATCGGATAGGG 59.108 47.826 0.00 0.00 0.00 3.53
3164 3737 2.894126 TCTTCTTCTCATCGGATAGGGC 59.106 50.000 0.00 0.00 0.00 5.19
3165 3738 1.248486 TCTTCTCATCGGATAGGGCG 58.752 55.000 0.00 0.00 0.00 6.13
3166 3739 1.202891 TCTTCTCATCGGATAGGGCGA 60.203 52.381 0.00 0.00 0.00 5.54
3167 3740 1.201181 CTTCTCATCGGATAGGGCGAG 59.799 57.143 0.00 0.00 0.00 5.03
3168 3741 1.214062 CTCATCGGATAGGGCGAGC 59.786 63.158 0.00 0.00 0.00 5.03
3169 3742 1.527433 CTCATCGGATAGGGCGAGCA 61.527 60.000 0.00 0.00 0.00 4.26
3170 3743 0.900182 TCATCGGATAGGGCGAGCAT 60.900 55.000 0.00 0.00 0.00 3.79
3171 3744 0.817654 CATCGGATAGGGCGAGCATA 59.182 55.000 0.00 0.00 0.00 3.14
3172 3745 0.818296 ATCGGATAGGGCGAGCATAC 59.182 55.000 0.00 0.00 0.00 2.39
3173 3746 1.215647 CGGATAGGGCGAGCATACC 59.784 63.158 0.00 0.00 0.00 2.73
3174 3747 1.532604 CGGATAGGGCGAGCATACCA 61.533 60.000 0.00 0.00 0.00 3.25
3175 3748 0.037232 GGATAGGGCGAGCATACCAC 60.037 60.000 0.00 0.00 0.00 4.16
3176 3749 0.037232 GATAGGGCGAGCATACCACC 60.037 60.000 0.00 0.00 0.00 4.61
3177 3750 1.481056 ATAGGGCGAGCATACCACCC 61.481 60.000 0.00 0.00 41.17 4.61
3178 3751 3.480133 GGGCGAGCATACCACCCT 61.480 66.667 0.00 0.00 37.59 4.34
3179 3752 2.590092 GGCGAGCATACCACCCTT 59.410 61.111 0.00 0.00 0.00 3.95
3180 3753 1.819632 GGCGAGCATACCACCCTTG 60.820 63.158 0.00 0.00 0.00 3.61
3181 3754 1.220749 GCGAGCATACCACCCTTGA 59.779 57.895 0.00 0.00 0.00 3.02
3182 3755 1.090052 GCGAGCATACCACCCTTGAC 61.090 60.000 0.00 0.00 0.00 3.18
3183 3756 0.462047 CGAGCATACCACCCTTGACC 60.462 60.000 0.00 0.00 0.00 4.02
3184 3757 0.618458 GAGCATACCACCCTTGACCA 59.382 55.000 0.00 0.00 0.00 4.02
3185 3758 0.328258 AGCATACCACCCTTGACCAC 59.672 55.000 0.00 0.00 0.00 4.16
3186 3759 0.328258 GCATACCACCCTTGACCACT 59.672 55.000 0.00 0.00 0.00 4.00
3187 3760 1.950484 GCATACCACCCTTGACCACTG 60.950 57.143 0.00 0.00 0.00 3.66
3188 3761 0.328258 ATACCACCCTTGACCACTGC 59.672 55.000 0.00 0.00 0.00 4.40
3189 3762 1.774894 TACCACCCTTGACCACTGCC 61.775 60.000 0.00 0.00 0.00 4.85
3190 3763 2.282462 CACCCTTGACCACTGCCC 60.282 66.667 0.00 0.00 0.00 5.36
3191 3764 3.580319 ACCCTTGACCACTGCCCC 61.580 66.667 0.00 0.00 0.00 5.80
3192 3765 4.722700 CCCTTGACCACTGCCCCG 62.723 72.222 0.00 0.00 0.00 5.73
3193 3766 3.636231 CCTTGACCACTGCCCCGA 61.636 66.667 0.00 0.00 0.00 5.14
3194 3767 2.671070 CTTGACCACTGCCCCGAT 59.329 61.111 0.00 0.00 0.00 4.18
3195 3768 1.450312 CTTGACCACTGCCCCGATC 60.450 63.158 0.00 0.00 0.00 3.69
3196 3769 2.184020 CTTGACCACTGCCCCGATCA 62.184 60.000 0.00 0.00 0.00 2.92
3197 3770 1.561769 TTGACCACTGCCCCGATCAT 61.562 55.000 0.00 0.00 0.00 2.45
3198 3771 1.524621 GACCACTGCCCCGATCATG 60.525 63.158 0.00 0.00 0.00 3.07
3199 3772 1.971505 GACCACTGCCCCGATCATGA 61.972 60.000 0.00 0.00 0.00 3.07
3200 3773 1.224315 CCACTGCCCCGATCATGAA 59.776 57.895 0.00 0.00 0.00 2.57
3201 3774 1.097547 CCACTGCCCCGATCATGAAC 61.098 60.000 0.00 0.00 0.00 3.18
3202 3775 1.097547 CACTGCCCCGATCATGAACC 61.098 60.000 0.00 0.00 0.00 3.62
3203 3776 1.224315 CTGCCCCGATCATGAACCA 59.776 57.895 0.00 0.00 0.00 3.67
3204 3777 0.394216 CTGCCCCGATCATGAACCAA 60.394 55.000 0.00 0.00 0.00 3.67
3205 3778 0.038890 TGCCCCGATCATGAACCAAA 59.961 50.000 0.00 0.00 0.00 3.28
3206 3779 0.455815 GCCCCGATCATGAACCAAAC 59.544 55.000 0.00 0.00 0.00 2.93
3207 3780 1.955208 GCCCCGATCATGAACCAAACT 60.955 52.381 0.00 0.00 0.00 2.66
3208 3781 2.682563 GCCCCGATCATGAACCAAACTA 60.683 50.000 0.00 0.00 0.00 2.24
3209 3782 3.820557 CCCCGATCATGAACCAAACTAT 58.179 45.455 0.00 0.00 0.00 2.12
3240 3813 3.620374 ACTGAAAGCTGCAACATAGATCG 59.380 43.478 1.02 0.00 37.60 3.69
3256 4013 2.900546 AGATCGTCAAAGGTCCTTCTGT 59.099 45.455 4.10 0.00 0.00 3.41
3364 4122 9.289782 GCAGTATTAAATGATCCCTAGTGAATT 57.710 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.149307 CCGCGGGAAATGGTTATAATATTTTT 58.851 34.615 20.10 0.00 0.00 1.94
9 10 6.683715 CCGCGGGAAATGGTTATAATATTTT 58.316 36.000 20.10 0.00 0.00 1.82
10 11 5.336134 GCCGCGGGAAATGGTTATAATATTT 60.336 40.000 29.38 9.22 0.00 1.40
11 12 4.157105 GCCGCGGGAAATGGTTATAATATT 59.843 41.667 29.38 0.00 0.00 1.28
12 13 3.692593 GCCGCGGGAAATGGTTATAATAT 59.307 43.478 29.38 0.00 0.00 1.28
13 14 3.075884 GCCGCGGGAAATGGTTATAATA 58.924 45.455 29.38 0.00 0.00 0.98
14 15 1.883926 GCCGCGGGAAATGGTTATAAT 59.116 47.619 29.38 0.00 0.00 1.28
15 16 1.310904 GCCGCGGGAAATGGTTATAA 58.689 50.000 29.38 0.00 0.00 0.98
16 17 0.180642 TGCCGCGGGAAATGGTTATA 59.819 50.000 29.38 0.00 0.00 0.98
17 18 0.681564 TTGCCGCGGGAAATGGTTAT 60.682 50.000 30.89 0.00 0.00 1.89
18 19 1.303398 TTGCCGCGGGAAATGGTTA 60.303 52.632 30.89 4.97 0.00 2.85
19 20 2.598985 TTGCCGCGGGAAATGGTT 60.599 55.556 30.89 0.00 0.00 3.67
20 21 3.370231 GTTGCCGCGGGAAATGGT 61.370 61.111 34.34 0.00 0.00 3.55
21 22 4.474846 CGTTGCCGCGGGAAATGG 62.475 66.667 34.34 21.27 0.00 3.16
32 33 4.143333 TAGAGCTCCCGCGTTGCC 62.143 66.667 10.93 0.96 42.32 4.52
33 34 2.001361 TACTAGAGCTCCCGCGTTGC 62.001 60.000 10.93 6.22 42.32 4.17
34 35 0.454600 TTACTAGAGCTCCCGCGTTG 59.545 55.000 10.93 0.00 42.32 4.10
35 36 1.400737 ATTACTAGAGCTCCCGCGTT 58.599 50.000 10.93 0.00 42.32 4.84
36 37 1.400737 AATTACTAGAGCTCCCGCGT 58.599 50.000 10.93 5.11 42.32 6.01
37 38 2.128035 CAAATTACTAGAGCTCCCGCG 58.872 52.381 10.93 0.00 42.32 6.46
38 39 3.454371 TCAAATTACTAGAGCTCCCGC 57.546 47.619 10.93 0.00 0.00 6.13
39 40 5.661458 TCTTTCAAATTACTAGAGCTCCCG 58.339 41.667 10.93 4.02 0.00 5.14
40 41 7.923414 TTTCTTTCAAATTACTAGAGCTCCC 57.077 36.000 10.93 0.00 0.00 4.30
63 64 8.145767 GGGGTAATTAGTTACAACTTGCTTTTT 58.854 33.333 9.97 0.00 41.59 1.94
64 65 7.288158 TGGGGTAATTAGTTACAACTTGCTTTT 59.712 33.333 9.97 0.00 41.59 2.27
65 66 6.778559 TGGGGTAATTAGTTACAACTTGCTTT 59.221 34.615 9.97 0.00 41.59 3.51
66 67 6.308566 TGGGGTAATTAGTTACAACTTGCTT 58.691 36.000 9.97 0.00 41.59 3.91
67 68 5.883180 TGGGGTAATTAGTTACAACTTGCT 58.117 37.500 9.97 0.00 41.59 3.91
68 69 6.578163 TTGGGGTAATTAGTTACAACTTGC 57.422 37.500 9.97 0.00 41.59 4.01
69 70 7.147966 GGGATTGGGGTAATTAGTTACAACTTG 60.148 40.741 9.97 0.00 41.59 3.16
70 71 6.893554 GGGATTGGGGTAATTAGTTACAACTT 59.106 38.462 9.97 0.00 41.59 2.66
71 72 6.429151 GGGATTGGGGTAATTAGTTACAACT 58.571 40.000 9.97 0.00 41.59 3.16
72 73 5.297527 CGGGATTGGGGTAATTAGTTACAAC 59.702 44.000 9.97 3.19 41.59 3.32
73 74 5.191323 TCGGGATTGGGGTAATTAGTTACAA 59.809 40.000 9.97 0.00 41.59 2.41
74 75 4.720773 TCGGGATTGGGGTAATTAGTTACA 59.279 41.667 9.97 0.00 41.59 2.41
95 96 9.546098 CGTTGTCGTTAATTACATTATTAGTCG 57.454 33.333 0.00 0.00 0.00 4.18
96 97 9.839589 CCGTTGTCGTTAATTACATTATTAGTC 57.160 33.333 0.00 0.00 35.01 2.59
124 125 7.291411 AGATTGGCATCGTATATATACCCTC 57.709 40.000 15.70 7.02 34.17 4.30
171 178 1.220749 GTCTGTCGGCATGCCCTTA 59.779 57.895 30.79 13.97 0.00 2.69
205 219 1.343465 GAAGGTCTGTCGGAAGTGGAA 59.657 52.381 0.00 0.00 0.00 3.53
206 220 0.966920 GAAGGTCTGTCGGAAGTGGA 59.033 55.000 0.00 0.00 0.00 4.02
209 223 2.036089 GACTTGAAGGTCTGTCGGAAGT 59.964 50.000 0.00 0.00 33.81 3.01
293 318 1.515081 CGGGAGAGACGGAGAGATAC 58.485 60.000 0.00 0.00 0.00 2.24
352 378 2.985896 CGAAGCTTGGAGGATTGGTTA 58.014 47.619 2.10 0.00 0.00 2.85
353 379 1.826385 CGAAGCTTGGAGGATTGGTT 58.174 50.000 2.10 0.00 0.00 3.67
354 380 3.558674 CGAAGCTTGGAGGATTGGT 57.441 52.632 2.10 0.00 0.00 3.67
493 525 8.345724 AGCTGATTTCATCATTACAAGAAAGT 57.654 30.769 0.00 0.00 38.85 2.66
569 688 1.593196 CCCCCGCAGTATGTACAATG 58.407 55.000 0.00 0.36 39.31 2.82
693 908 5.380043 AGGCAAGATCGAACCAATTATGAT 58.620 37.500 0.00 0.00 0.00 2.45
699 914 3.274288 GAAGAGGCAAGATCGAACCAAT 58.726 45.455 0.00 0.00 0.00 3.16
704 919 0.532573 AGCGAAGAGGCAAGATCGAA 59.467 50.000 5.55 0.00 37.48 3.71
735 950 5.121811 GCATCTTGGACAGAACAGATATGT 58.878 41.667 0.00 0.00 34.16 2.29
738 953 4.383444 CCTGCATCTTGGACAGAACAGATA 60.383 45.833 0.00 0.00 40.14 1.98
746 961 1.078918 TCGCCTGCATCTTGGACAG 60.079 57.895 0.00 0.00 0.00 3.51
890 1399 4.494350 TGTTAGTACACTGAACCTCGAC 57.506 45.455 0.00 0.00 0.00 4.20
1389 1933 2.552743 CGTCAGTACTTCCACAGAGTCA 59.447 50.000 0.00 0.00 0.00 3.41
1390 1934 2.668834 GCGTCAGTACTTCCACAGAGTC 60.669 54.545 0.00 0.00 0.00 3.36
1849 2402 0.320421 CAGAACGGTGGTGAACGGAT 60.320 55.000 0.00 0.00 33.48 4.18
2004 2560 0.537188 CACCAGAGCCGTAATCCAGT 59.463 55.000 0.00 0.00 0.00 4.00
2064 2620 3.068307 GTGGCTCGCCTAATTCTCTTCTA 59.932 47.826 9.65 0.00 36.94 2.10
2383 2952 4.022676 CGCCTTTTAACCTTTTAGCTTGGA 60.023 41.667 0.00 0.00 0.00 3.53
2449 3018 7.891561 AGCTAACTGATATCCTGAGAATACAC 58.108 38.462 0.00 0.00 0.00 2.90
2484 3053 0.592637 CTTGATTTCTGCCGCACACA 59.407 50.000 0.00 0.00 0.00 3.72
2489 3058 0.098376 CAGCTCTTGATTTCTGCCGC 59.902 55.000 0.00 0.00 0.00 6.53
2499 3068 8.806146 TGTACTATATGCATTATCAGCTCTTGA 58.194 33.333 3.54 0.00 40.85 3.02
2561 3130 6.458232 TTAGAACAAAGCAAAACAAGCCTA 57.542 33.333 0.00 0.00 0.00 3.93
2618 3187 0.033366 GCAAAACTGAACCGCCCAAT 59.967 50.000 0.00 0.00 0.00 3.16
2624 3193 0.040067 GCTCAGGCAAAACTGAACCG 60.040 55.000 0.00 0.00 46.05 4.44
2687 3256 5.062183 CACCTATTGTGTGACGACTGTATTG 59.938 44.000 0.00 0.00 40.26 1.90
2694 3263 1.606994 TGGCACCTATTGTGTGACGAC 60.607 52.381 0.00 0.00 45.00 4.34
2704 3273 5.700402 AATCAGAACTAGTGGCACCTATT 57.300 39.130 15.27 5.75 0.00 1.73
2705 3274 5.431765 CAAATCAGAACTAGTGGCACCTAT 58.568 41.667 15.27 0.00 0.00 2.57
2706 3275 4.323485 CCAAATCAGAACTAGTGGCACCTA 60.323 45.833 15.27 5.38 0.00 3.08
2707 3276 3.560025 CCAAATCAGAACTAGTGGCACCT 60.560 47.826 15.27 0.06 0.00 4.00
2748 3317 7.308435 CAGGGAAAAATGTTCAGATGTAAGAC 58.692 38.462 0.00 0.00 0.00 3.01
2763 3332 3.056607 CGGTGATTCTTGCAGGGAAAAAT 60.057 43.478 7.98 0.00 0.00 1.82
2768 3337 0.400213 AACGGTGATTCTTGCAGGGA 59.600 50.000 0.00 0.00 0.00 4.20
2785 3354 4.003648 AGGAGTACAATGCAGTTGCTAAC 58.996 43.478 5.62 0.00 41.69 2.34
2808 3377 5.853810 CGTTGATATATCTCTGTGGTTCTCG 59.146 44.000 13.79 0.26 0.00 4.04
2815 3384 6.868339 TGCATAACCGTTGATATATCTCTGTG 59.132 38.462 13.79 2.17 0.00 3.66
2816 3385 6.868864 GTGCATAACCGTTGATATATCTCTGT 59.131 38.462 13.79 6.92 0.00 3.41
2863 3432 6.773638 AGTATTATTCTATGTTGGCAGGAGG 58.226 40.000 0.00 0.00 0.00 4.30
2904 3473 8.985805 CCTCTGTAACTTGTAAAAACGTCTTAT 58.014 33.333 0.00 0.00 0.00 1.73
2905 3474 7.439056 CCCTCTGTAACTTGTAAAAACGTCTTA 59.561 37.037 0.00 0.00 0.00 2.10
2908 3477 5.754890 TCCCTCTGTAACTTGTAAAAACGTC 59.245 40.000 0.00 0.00 0.00 4.34
2909 3478 5.673514 TCCCTCTGTAACTTGTAAAAACGT 58.326 37.500 0.00 0.00 0.00 3.99
2910 3479 5.756833 ACTCCCTCTGTAACTTGTAAAAACG 59.243 40.000 0.00 0.00 0.00 3.60
2911 3480 8.718734 CATACTCCCTCTGTAACTTGTAAAAAC 58.281 37.037 0.00 0.00 0.00 2.43
2912 3481 8.434392 ACATACTCCCTCTGTAACTTGTAAAAA 58.566 33.333 0.00 0.00 0.00 1.94
2918 3487 6.037786 TCAACATACTCCCTCTGTAACTTG 57.962 41.667 0.00 0.00 0.00 3.16
2927 3496 5.112686 GTGTCATTCTCAACATACTCCCTC 58.887 45.833 0.00 0.00 0.00 4.30
2939 3512 0.605319 GCCCAACCGTGTCATTCTCA 60.605 55.000 0.00 0.00 0.00 3.27
2992 3565 2.028748 GCAAAAGATCACCCATGCACTT 60.029 45.455 0.00 0.00 34.10 3.16
2993 3566 1.547372 GCAAAAGATCACCCATGCACT 59.453 47.619 0.00 0.00 34.10 4.40
2997 3570 3.947910 AACAGCAAAAGATCACCCATG 57.052 42.857 0.00 0.00 0.00 3.66
3030 3603 6.245408 AGTGCCCATTTTAAAGATGTACAGA 58.755 36.000 0.33 0.00 0.00 3.41
3064 3637 6.512297 GGTAATTTGCACCATATACTTTGGG 58.488 40.000 0.00 0.00 38.64 4.12
3087 3660 2.350522 ACAAAGATAAGTGCAGCTCGG 58.649 47.619 0.00 0.00 0.00 4.63
3113 3686 2.323968 TGAAAAACAAGCAAAGGCCC 57.676 45.000 0.00 0.00 42.56 5.80
3129 3702 9.823647 GATGAGAAGAAGACATAATACCTTGAA 57.176 33.333 0.00 0.00 0.00 2.69
3130 3703 8.138074 CGATGAGAAGAAGACATAATACCTTGA 58.862 37.037 0.00 0.00 0.00 3.02
3131 3704 7.383572 CCGATGAGAAGAAGACATAATACCTTG 59.616 40.741 0.00 0.00 0.00 3.61
3132 3705 7.287927 TCCGATGAGAAGAAGACATAATACCTT 59.712 37.037 0.00 0.00 0.00 3.50
3133 3706 6.778069 TCCGATGAGAAGAAGACATAATACCT 59.222 38.462 0.00 0.00 0.00 3.08
3134 3707 6.982852 TCCGATGAGAAGAAGACATAATACC 58.017 40.000 0.00 0.00 0.00 2.73
3135 3708 9.781834 CTATCCGATGAGAAGAAGACATAATAC 57.218 37.037 0.00 0.00 0.00 1.89
3136 3709 8.961634 CCTATCCGATGAGAAGAAGACATAATA 58.038 37.037 0.00 0.00 0.00 0.98
3137 3710 7.093552 CCCTATCCGATGAGAAGAAGACATAAT 60.094 40.741 0.00 0.00 0.00 1.28
3138 3711 6.209589 CCCTATCCGATGAGAAGAAGACATAA 59.790 42.308 0.00 0.00 0.00 1.90
3139 3712 5.712446 CCCTATCCGATGAGAAGAAGACATA 59.288 44.000 0.00 0.00 0.00 2.29
3140 3713 4.526262 CCCTATCCGATGAGAAGAAGACAT 59.474 45.833 0.00 0.00 0.00 3.06
3141 3714 3.891977 CCCTATCCGATGAGAAGAAGACA 59.108 47.826 0.00 0.00 0.00 3.41
3142 3715 3.305744 GCCCTATCCGATGAGAAGAAGAC 60.306 52.174 0.00 0.00 0.00 3.01
3143 3716 2.894126 GCCCTATCCGATGAGAAGAAGA 59.106 50.000 0.00 0.00 0.00 2.87
3144 3717 2.352225 CGCCCTATCCGATGAGAAGAAG 60.352 54.545 0.00 0.00 0.00 2.85
3145 3718 1.613925 CGCCCTATCCGATGAGAAGAA 59.386 52.381 0.00 0.00 0.00 2.52
3146 3719 1.202891 TCGCCCTATCCGATGAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
3147 3720 1.201181 CTCGCCCTATCCGATGAGAAG 59.799 57.143 0.00 0.00 33.83 2.85
3148 3721 1.248486 CTCGCCCTATCCGATGAGAA 58.752 55.000 0.00 0.00 33.83 2.87
3149 3722 1.244697 GCTCGCCCTATCCGATGAGA 61.245 60.000 0.00 0.00 33.83 3.27
3150 3723 1.214062 GCTCGCCCTATCCGATGAG 59.786 63.158 0.00 0.00 33.83 2.90
3151 3724 0.900182 ATGCTCGCCCTATCCGATGA 60.900 55.000 0.00 0.00 33.83 2.92
3152 3725 0.817654 TATGCTCGCCCTATCCGATG 59.182 55.000 0.00 0.00 33.83 3.84
3153 3726 0.818296 GTATGCTCGCCCTATCCGAT 59.182 55.000 0.00 0.00 33.83 4.18
3154 3727 1.248785 GGTATGCTCGCCCTATCCGA 61.249 60.000 0.00 0.00 0.00 4.55
3155 3728 1.215647 GGTATGCTCGCCCTATCCG 59.784 63.158 0.00 0.00 0.00 4.18
3156 3729 0.037232 GTGGTATGCTCGCCCTATCC 60.037 60.000 0.00 0.00 0.00 2.59
3157 3730 0.037232 GGTGGTATGCTCGCCCTATC 60.037 60.000 0.00 0.00 0.00 2.08
3158 3731 2.058675 GGTGGTATGCTCGCCCTAT 58.941 57.895 0.00 0.00 0.00 2.57
3159 3732 3.546009 GGTGGTATGCTCGCCCTA 58.454 61.111 0.00 0.00 0.00 3.53
3162 3735 1.819632 CAAGGGTGGTATGCTCGCC 60.820 63.158 0.00 0.00 0.00 5.54
3163 3736 1.090052 GTCAAGGGTGGTATGCTCGC 61.090 60.000 0.00 0.00 0.00 5.03
3164 3737 0.462047 GGTCAAGGGTGGTATGCTCG 60.462 60.000 0.00 0.00 0.00 5.03
3165 3738 0.618458 TGGTCAAGGGTGGTATGCTC 59.382 55.000 0.00 0.00 0.00 4.26
3166 3739 0.328258 GTGGTCAAGGGTGGTATGCT 59.672 55.000 0.00 0.00 0.00 3.79
3167 3740 0.328258 AGTGGTCAAGGGTGGTATGC 59.672 55.000 0.00 0.00 0.00 3.14
3168 3741 1.950484 GCAGTGGTCAAGGGTGGTATG 60.950 57.143 0.00 0.00 0.00 2.39
3169 3742 0.328258 GCAGTGGTCAAGGGTGGTAT 59.672 55.000 0.00 0.00 0.00 2.73
3170 3743 1.758592 GCAGTGGTCAAGGGTGGTA 59.241 57.895 0.00 0.00 0.00 3.25
3171 3744 2.515901 GCAGTGGTCAAGGGTGGT 59.484 61.111 0.00 0.00 0.00 4.16
3172 3745 2.282462 GGCAGTGGTCAAGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
3173 3746 2.282462 GGGCAGTGGTCAAGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
3174 3747 3.580319 GGGGCAGTGGTCAAGGGT 61.580 66.667 0.00 0.00 0.00 4.34
3175 3748 4.722700 CGGGGCAGTGGTCAAGGG 62.723 72.222 0.00 0.00 0.00 3.95
3176 3749 2.876368 GATCGGGGCAGTGGTCAAGG 62.876 65.000 0.00 0.00 0.00 3.61
3177 3750 1.450312 GATCGGGGCAGTGGTCAAG 60.450 63.158 0.00 0.00 0.00 3.02
3178 3751 1.561769 ATGATCGGGGCAGTGGTCAA 61.562 55.000 0.00 0.00 0.00 3.18
3179 3752 1.995066 ATGATCGGGGCAGTGGTCA 60.995 57.895 0.00 0.00 0.00 4.02
3180 3753 1.524621 CATGATCGGGGCAGTGGTC 60.525 63.158 0.00 0.00 0.00 4.02
3181 3754 1.561769 TTCATGATCGGGGCAGTGGT 61.562 55.000 0.00 0.00 0.00 4.16
3182 3755 1.097547 GTTCATGATCGGGGCAGTGG 61.098 60.000 0.00 0.00 0.00 4.00
3183 3756 1.097547 GGTTCATGATCGGGGCAGTG 61.098 60.000 0.00 0.00 0.00 3.66
3184 3757 1.224592 GGTTCATGATCGGGGCAGT 59.775 57.895 0.00 0.00 0.00 4.40
3185 3758 0.394216 TTGGTTCATGATCGGGGCAG 60.394 55.000 0.00 0.00 0.00 4.85
3186 3759 0.038890 TTTGGTTCATGATCGGGGCA 59.961 50.000 0.00 0.00 0.00 5.36
3187 3760 0.455815 GTTTGGTTCATGATCGGGGC 59.544 55.000 0.00 0.00 0.00 5.80
3188 3761 2.128771 AGTTTGGTTCATGATCGGGG 57.871 50.000 0.00 0.00 0.00 5.73
3189 3762 4.199310 ACATAGTTTGGTTCATGATCGGG 58.801 43.478 0.00 0.00 0.00 5.14
3190 3763 5.818136 AACATAGTTTGGTTCATGATCGG 57.182 39.130 0.00 0.00 0.00 4.18
3191 3764 7.065803 ACCTAAACATAGTTTGGTTCATGATCG 59.934 37.037 0.00 0.00 36.41 3.69
3192 3765 8.281212 ACCTAAACATAGTTTGGTTCATGATC 57.719 34.615 0.00 0.00 36.41 2.92
3193 3766 9.174166 GTACCTAAACATAGTTTGGTTCATGAT 57.826 33.333 16.18 0.00 37.68 2.45
3194 3767 8.380099 AGTACCTAAACATAGTTTGGTTCATGA 58.620 33.333 16.18 0.00 37.68 3.07
3195 3768 8.450964 CAGTACCTAAACATAGTTTGGTTCATG 58.549 37.037 16.18 11.39 37.68 3.07
3196 3769 8.380099 TCAGTACCTAAACATAGTTTGGTTCAT 58.620 33.333 16.18 6.18 37.68 2.57
3197 3770 7.737869 TCAGTACCTAAACATAGTTTGGTTCA 58.262 34.615 16.18 3.86 37.68 3.18
3198 3771 8.611654 TTCAGTACCTAAACATAGTTTGGTTC 57.388 34.615 16.18 13.00 37.68 3.62
3199 3772 8.983702 TTTCAGTACCTAAACATAGTTTGGTT 57.016 30.769 16.18 2.83 37.68 3.67
3200 3773 7.174426 GCTTTCAGTACCTAAACATAGTTTGGT 59.826 37.037 15.64 15.64 39.50 3.67
3201 3774 7.390718 AGCTTTCAGTACCTAAACATAGTTTGG 59.609 37.037 5.45 2.53 0.00 3.28
3202 3775 8.230486 CAGCTTTCAGTACCTAAACATAGTTTG 58.770 37.037 5.45 0.00 0.00 2.93
3203 3776 7.094762 GCAGCTTTCAGTACCTAAACATAGTTT 60.095 37.037 0.51 0.51 0.00 2.66
3204 3777 6.371825 GCAGCTTTCAGTACCTAAACATAGTT 59.628 38.462 0.00 0.00 0.00 2.24
3205 3778 5.875359 GCAGCTTTCAGTACCTAAACATAGT 59.125 40.000 0.00 0.00 0.00 2.12
3206 3779 5.874810 TGCAGCTTTCAGTACCTAAACATAG 59.125 40.000 0.00 0.00 0.00 2.23
3207 3780 5.800296 TGCAGCTTTCAGTACCTAAACATA 58.200 37.500 0.00 0.00 0.00 2.29
3208 3781 4.651778 TGCAGCTTTCAGTACCTAAACAT 58.348 39.130 0.00 0.00 0.00 2.71
3209 3782 4.079980 TGCAGCTTTCAGTACCTAAACA 57.920 40.909 0.00 0.00 0.00 2.83
3240 3813 3.208747 TCCAACAGAAGGACCTTTGAC 57.791 47.619 8.49 0.00 0.00 3.18
3256 4013 4.080638 ACTTTTTCTGGCCAATTGTTCCAA 60.081 37.500 7.01 6.50 0.00 3.53
3364 4122 8.704849 ATTGGTGGATTTTGAATATTATCCGA 57.295 30.769 9.44 0.00 39.52 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.