Multiple sequence alignment - TraesCS1D01G390600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G390600 chr1D 100.000 4107 0 0 1 4107 462050387 462054493 0.000000e+00 7585.0
1 TraesCS1D01G390600 chr1A 92.567 1991 70 31 300 2237 553704038 553706003 0.000000e+00 2785.0
2 TraesCS1D01G390600 chr1A 94.092 1388 52 12 2310 3696 553706046 553707404 0.000000e+00 2082.0
3 TraesCS1D01G390600 chr1A 90.050 402 28 7 3707 4106 553707335 553707726 1.020000e-140 510.0
4 TraesCS1D01G390600 chr1A 83.172 309 19 16 52 338 553702845 553703142 6.820000e-63 252.0
5 TraesCS1D01G390600 chr1B 89.792 2018 65 42 313 2237 636261534 636263503 0.000000e+00 2455.0
6 TraesCS1D01G390600 chr1B 91.461 1417 71 22 2314 3706 636263550 636264940 0.000000e+00 1901.0
7 TraesCS1D01G390600 chr1B 89.342 319 25 7 3708 4023 636264858 636265170 3.850000e-105 392.0
8 TraesCS1D01G390600 chr1B 85.441 261 15 11 1 253 636258419 636258664 2.450000e-62 250.0
9 TraesCS1D01G390600 chr1B 84.348 230 30 6 3267 3495 636304108 636304332 1.920000e-53 220.0
10 TraesCS1D01G390600 chr1B 90.323 124 10 2 3750 3872 636752849 636752971 1.180000e-35 161.0
11 TraesCS1D01G390600 chr1B 93.103 58 4 0 4028 4085 636267524 636267581 7.310000e-13 86.1
12 TraesCS1D01G390600 chr5A 98.837 86 1 0 3776 3861 650149372 650149457 1.980000e-33 154.0
13 TraesCS1D01G390600 chr5A 97.753 89 1 1 3772 3860 650246616 650246703 7.110000e-33 152.0
14 TraesCS1D01G390600 chr5D 94.898 98 3 2 3775 3871 521839690 521839786 7.110000e-33 152.0
15 TraesCS1D01G390600 chr5B 96.739 92 1 1 3771 3860 658160112 658160203 7.110000e-33 152.0
16 TraesCS1D01G390600 chr7B 95.745 94 3 1 3772 3864 677754312 677754219 2.560000e-32 150.0
17 TraesCS1D01G390600 chr7D 93.000 100 6 1 3768 3866 598695124 598695223 1.190000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G390600 chr1D 462050387 462054493 4106 False 7585.00 7585 100.00000 1 4107 1 chr1D.!!$F1 4106
1 TraesCS1D01G390600 chr1A 553702845 553707726 4881 False 1407.25 2785 89.97025 52 4106 4 chr1A.!!$F1 4054
2 TraesCS1D01G390600 chr1B 636258419 636267581 9162 False 1016.82 2455 89.82780 1 4085 5 chr1B.!!$F3 4084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 324 0.031449 ACCGCGAACCAACCAAAATG 59.969 50.000 8.23 0.00 0.00 2.32 F
747 4615 0.618981 CCCTTTCTAGGCCGAGGTTT 59.381 55.000 13.44 0.00 40.50 3.27 F
825 4693 1.100510 TCCAGATTCAGCTGCATTGC 58.899 50.000 9.47 0.46 34.56 3.56 F
2436 6380 1.063266 TCCCCAAAGGTTCAAACAGCT 60.063 47.619 0.00 0.00 36.75 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 5994 0.111446 TAGCCTCCAGGATCTCCTCG 59.889 60.000 0.0 0.0 46.65 4.63 R
2250 6175 1.818674 CGAGTTTTTCCCCTTGGATGG 59.181 52.381 0.0 0.0 41.40 3.51 R
2531 6490 2.436417 TGTCAGCATTAACTTGAGGGC 58.564 47.619 0.0 0.0 0.00 5.19 R
3891 7863 1.366319 AGCTGATGGGTTCACTTCCT 58.634 50.000 0.0 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 68 0.865769 GCCCCTACGCACATTATTCG 59.134 55.000 0.00 0.00 0.00 3.34
93 102 4.041815 TCACACCAGTCTACTCTACTCACT 59.958 45.833 0.00 0.00 0.00 3.41
95 104 4.202482 ACACCAGTCTACTCTACTCACTGT 60.202 45.833 0.00 0.00 33.92 3.55
96 105 4.393680 CACCAGTCTACTCTACTCACTGTC 59.606 50.000 0.00 0.00 33.92 3.51
97 106 4.041815 ACCAGTCTACTCTACTCACTGTCA 59.958 45.833 0.00 0.00 33.92 3.58
98 107 4.393680 CCAGTCTACTCTACTCACTGTCAC 59.606 50.000 0.00 0.00 33.92 3.67
99 108 4.998033 CAGTCTACTCTACTCACTGTCACA 59.002 45.833 0.00 0.00 31.59 3.58
100 109 5.121611 CAGTCTACTCTACTCACTGTCACAG 59.878 48.000 2.22 2.22 37.52 3.66
101 110 4.393680 GTCTACTCTACTCACTGTCACAGG 59.606 50.000 10.28 0.00 35.51 4.00
102 111 3.231207 ACTCTACTCACTGTCACAGGT 57.769 47.619 10.28 0.00 35.51 4.00
103 112 3.567397 ACTCTACTCACTGTCACAGGTT 58.433 45.455 10.28 0.00 35.51 3.50
104 113 3.961408 ACTCTACTCACTGTCACAGGTTT 59.039 43.478 10.28 0.00 35.51 3.27
105 114 4.406003 ACTCTACTCACTGTCACAGGTTTT 59.594 41.667 10.28 0.00 35.51 2.43
106 115 4.945246 TCTACTCACTGTCACAGGTTTTC 58.055 43.478 10.28 0.00 35.51 2.29
152 161 7.968405 AGACAATTATTTCGGCTGATTTGTTAC 59.032 33.333 0.00 0.00 0.00 2.50
183 192 5.171339 CTGGGCCAGCTACTAATTATCAT 57.829 43.478 22.68 0.00 0.00 2.45
266 289 2.030457 CAGATTCGCCGCTCGTATTTTT 59.970 45.455 0.00 0.00 39.67 1.94
284 307 6.712179 ATTTTTCTACTCCTACTCCTACCG 57.288 41.667 0.00 0.00 0.00 4.02
299 323 1.538075 CTACCGCGAACCAACCAAAAT 59.462 47.619 8.23 0.00 0.00 1.82
300 324 0.031449 ACCGCGAACCAACCAAAATG 59.969 50.000 8.23 0.00 0.00 2.32
304 328 2.606795 CGCGAACCAACCAAAATGACAT 60.607 45.455 0.00 0.00 0.00 3.06
305 329 2.986479 GCGAACCAACCAAAATGACATC 59.014 45.455 0.00 0.00 0.00 3.06
306 330 3.233578 CGAACCAACCAAAATGACATCG 58.766 45.455 0.00 0.00 0.00 3.84
307 331 3.304391 CGAACCAACCAAAATGACATCGT 60.304 43.478 0.00 0.00 0.00 3.73
310 334 5.116069 ACCAACCAAAATGACATCGTAAC 57.884 39.130 0.00 0.00 0.00 2.50
339 3167 1.582461 GTGGCGGCGGTACAAAAAT 59.418 52.632 9.78 0.00 0.00 1.82
350 3178 5.692654 GGCGGTACAAAAATTGCTTCTTTTA 59.307 36.000 0.00 0.00 0.00 1.52
351 3179 6.128929 GGCGGTACAAAAATTGCTTCTTTTAG 60.129 38.462 0.00 0.00 0.00 1.85
352 3180 6.419710 GCGGTACAAAAATTGCTTCTTTTAGT 59.580 34.615 0.00 0.00 0.00 2.24
353 3181 7.042992 GCGGTACAAAAATTGCTTCTTTTAGTT 60.043 33.333 0.00 0.00 0.00 2.24
354 3182 8.813282 CGGTACAAAAATTGCTTCTTTTAGTTT 58.187 29.630 0.00 0.00 0.00 2.66
358 3186 8.673711 ACAAAAATTGCTTCTTTTAGTTTTCCC 58.326 29.630 0.00 0.00 0.00 3.97
359 3187 8.892723 CAAAAATTGCTTCTTTTAGTTTTCCCT 58.107 29.630 0.00 0.00 0.00 4.20
360 3188 9.461312 AAAAATTGCTTCTTTTAGTTTTCCCTT 57.539 25.926 0.00 0.00 0.00 3.95
361 3189 9.461312 AAAATTGCTTCTTTTAGTTTTCCCTTT 57.539 25.926 0.00 0.00 0.00 3.11
362 3190 9.461312 AAATTGCTTCTTTTAGTTTTCCCTTTT 57.539 25.926 0.00 0.00 0.00 2.27
363 3191 7.841915 TTGCTTCTTTTAGTTTTCCCTTTTG 57.158 32.000 0.00 0.00 0.00 2.44
364 3192 7.176589 TGCTTCTTTTAGTTTTCCCTTTTGA 57.823 32.000 0.00 0.00 0.00 2.69
365 3193 7.616313 TGCTTCTTTTAGTTTTCCCTTTTGAA 58.384 30.769 0.00 0.00 0.00 2.69
456 3284 2.358737 CAAGCGACGCCTTCCCTT 60.359 61.111 17.79 0.00 0.00 3.95
485 3316 2.689034 CCCCACCTCACTCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
486 3317 2.689034 CCCACCTCACTCCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
487 3318 2.689034 CCACCTCACTCCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
488 3319 2.689034 CACCTCACTCCCTCCCCC 60.689 72.222 0.00 0.00 0.00 5.40
489 3320 2.876858 ACCTCACTCCCTCCCCCT 60.877 66.667 0.00 0.00 0.00 4.79
490 3321 2.041405 CCTCACTCCCTCCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
491 3322 2.041405 CTCACTCCCTCCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
492 3323 2.540910 TCACTCCCTCCCCCTCCT 60.541 66.667 0.00 0.00 0.00 3.69
493 3324 2.041405 CACTCCCTCCCCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
494 3325 2.204705 ACTCCCTCCCCCTCCTCT 60.205 66.667 0.00 0.00 0.00 3.69
495 3326 2.329399 ACTCCCTCCCCCTCCTCTC 61.329 68.421 0.00 0.00 0.00 3.20
496 3327 3.036959 TCCCTCCCCCTCCTCTCC 61.037 72.222 0.00 0.00 0.00 3.71
497 3328 3.039526 CCCTCCCCCTCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
498 3329 2.612251 CCTCCCCCTCCTCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
499 3330 2.018086 CCTCCCCCTCCTCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
500 3331 1.541672 CTCCCCCTCCTCTCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
501 3332 2.015726 TCCCCCTCCTCTCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
502 3333 2.018086 CCCCCTCCTCTCCTCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
503 3334 1.541672 CCCCTCCTCTCCTCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
650 4500 4.554036 GCCCCAGATCCGGTGCTC 62.554 72.222 0.00 0.00 0.00 4.26
661 4511 2.360475 GGTGCTCTTCTGGTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
663 4513 1.073897 GTGCTCTTCTGGTGGGCTT 59.926 57.895 0.00 0.00 0.00 4.35
667 4517 1.301677 CTCTTCTGGTGGGCTTTCGC 61.302 60.000 0.00 0.00 0.00 4.70
668 4518 1.302832 CTTCTGGTGGGCTTTCGCT 60.303 57.895 0.00 0.00 36.09 4.93
669 4519 1.580845 CTTCTGGTGGGCTTTCGCTG 61.581 60.000 0.00 0.00 36.09 5.18
670 4520 3.741476 CTGGTGGGCTTTCGCTGC 61.741 66.667 0.00 0.00 36.09 5.25
735 4603 0.673644 CCATTGTCGCGTCCCTTTCT 60.674 55.000 5.77 0.00 0.00 2.52
736 4604 1.404986 CCATTGTCGCGTCCCTTTCTA 60.405 52.381 5.77 0.00 0.00 2.10
747 4615 0.618981 CCCTTTCTAGGCCGAGGTTT 59.381 55.000 13.44 0.00 40.50 3.27
751 4619 1.610554 TTCTAGGCCGAGGTTTCCCG 61.611 60.000 13.44 0.00 35.12 5.14
778 4646 2.614779 GGTCTAGCTCGGTTTGGTTAC 58.385 52.381 0.00 0.00 0.00 2.50
825 4693 1.100510 TCCAGATTCAGCTGCATTGC 58.899 50.000 9.47 0.46 34.56 3.56
1049 4967 3.998672 GACCAAGTCCACGCGGGA 61.999 66.667 11.66 11.66 45.89 5.14
1197 5121 3.649277 CTTCCCCTCCAGCGTCGTG 62.649 68.421 0.00 0.00 0.00 4.35
1237 5161 2.742372 CCTTCAAGGACGTGCCCG 60.742 66.667 2.38 0.00 37.67 6.13
2070 5994 3.450457 AGGTGATGTTCCTGAGTGAGATC 59.550 47.826 0.00 0.00 33.62 2.75
2160 6084 2.490903 AGCTCATTGCATCAACAGTTCC 59.509 45.455 0.00 0.00 45.94 3.62
2174 6098 2.781174 ACAGTTCCCACTTCCAGGTAAA 59.219 45.455 0.00 0.00 0.00 2.01
2176 6100 4.600111 ACAGTTCCCACTTCCAGGTAAATA 59.400 41.667 0.00 0.00 0.00 1.40
2200 6125 1.271434 TGCCCCAAGTAACATAACGCA 60.271 47.619 0.00 0.00 0.00 5.24
2211 6136 8.440059 CAAGTAACATAACGCAGTAATTCTGAA 58.560 33.333 8.52 0.00 45.00 3.02
2225 6150 9.565213 CAGTAATTCTGAATTCTTCAATGTTCC 57.435 33.333 18.22 0.00 46.27 3.62
2230 6155 8.690203 TTCTGAATTCTTCAATGTTCCTGTTA 57.310 30.769 7.05 0.00 39.58 2.41
2237 6162 7.905604 TCTTCAATGTTCCTGTTACAGTATG 57.094 36.000 11.68 0.00 46.00 2.39
2255 6180 7.715265 CAGTATGTATGTACTTTCACCATCC 57.285 40.000 0.00 0.00 32.74 3.51
2256 6181 7.272244 CAGTATGTATGTACTTTCACCATCCA 58.728 38.462 0.00 0.00 32.74 3.41
2257 6182 7.768582 CAGTATGTATGTACTTTCACCATCCAA 59.231 37.037 0.00 0.00 32.74 3.53
2258 6183 7.987458 AGTATGTATGTACTTTCACCATCCAAG 59.013 37.037 0.00 0.00 30.95 3.61
2259 6184 5.496556 TGTATGTACTTTCACCATCCAAGG 58.503 41.667 0.00 0.00 0.00 3.61
2260 6185 3.433306 TGTACTTTCACCATCCAAGGG 57.567 47.619 0.00 0.00 0.00 3.95
2261 6186 2.041081 TGTACTTTCACCATCCAAGGGG 59.959 50.000 0.00 0.00 0.00 4.79
2275 6200 5.093849 TCCAAGGGGAAAAACTCGTATAG 57.906 43.478 0.00 0.00 41.32 1.31
2276 6201 4.533311 TCCAAGGGGAAAAACTCGTATAGT 59.467 41.667 0.00 0.00 41.32 2.12
2277 6202 5.013391 TCCAAGGGGAAAAACTCGTATAGTT 59.987 40.000 0.00 0.00 45.12 2.24
2435 6379 1.068588 GTCCCCAAAGGTTCAAACAGC 59.931 52.381 0.00 0.00 36.75 4.40
2436 6380 1.063266 TCCCCAAAGGTTCAAACAGCT 60.063 47.619 0.00 0.00 36.75 4.24
2437 6381 2.175931 TCCCCAAAGGTTCAAACAGCTA 59.824 45.455 0.00 0.00 36.75 3.32
2524 6483 5.152097 CAAATGAGCAACAGATGTCTGAAC 58.848 41.667 16.41 5.52 46.59 3.18
2525 6484 3.758755 TGAGCAACAGATGTCTGAACT 57.241 42.857 16.41 9.75 46.59 3.01
2528 6487 1.728971 GCAACAGATGTCTGAACTCCG 59.271 52.381 16.41 0.36 46.59 4.63
2529 6488 2.610479 GCAACAGATGTCTGAACTCCGA 60.610 50.000 16.41 0.00 46.59 4.55
2531 6490 3.584406 ACAGATGTCTGAACTCCGAAG 57.416 47.619 16.41 0.00 46.59 3.79
2532 6491 2.266554 CAGATGTCTGAACTCCGAAGC 58.733 52.381 3.96 0.00 46.59 3.86
2533 6492 1.205893 AGATGTCTGAACTCCGAAGCC 59.794 52.381 0.00 0.00 0.00 4.35
2534 6493 0.250513 ATGTCTGAACTCCGAAGCCC 59.749 55.000 0.00 0.00 0.00 5.19
2535 6494 0.832135 TGTCTGAACTCCGAAGCCCT 60.832 55.000 0.00 0.00 0.00 5.19
2536 6495 0.108567 GTCTGAACTCCGAAGCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
2546 6505 1.401905 CCGAAGCCCTCAAGTTAATGC 59.598 52.381 0.00 0.00 0.00 3.56
2561 6520 6.594788 AGTTAATGCTGACAAATGGACAAT 57.405 33.333 0.00 0.00 0.00 2.71
2562 6521 6.996509 AGTTAATGCTGACAAATGGACAATT 58.003 32.000 0.00 0.00 0.00 2.32
2577 6536 5.826643 TGGACAATTTATCCAAAGTAGGCT 58.173 37.500 5.83 0.00 43.43 4.58
2690 6651 6.014584 ACATCTGTGTGTTATGGTCTGTTAGA 60.015 38.462 0.00 0.00 37.14 2.10
2691 6652 6.413783 TCTGTGTGTTATGGTCTGTTAGAA 57.586 37.500 0.00 0.00 0.00 2.10
2730 6694 8.849168 CACATATGCCCTGAATTTTCTATTACA 58.151 33.333 1.58 0.00 0.00 2.41
2731 6695 9.420118 ACATATGCCCTGAATTTTCTATTACAA 57.580 29.630 1.58 0.00 0.00 2.41
2866 6830 0.545646 TCATGCCCATCATCGTTCCA 59.454 50.000 0.00 0.00 31.79 3.53
2926 6890 1.002134 CCTGAACCTGACCGCCAAT 60.002 57.895 0.00 0.00 0.00 3.16
3025 6989 0.970937 AGGCGTCGATGGAGGAGAAA 60.971 55.000 6.79 0.00 0.00 2.52
3312 7277 3.559242 GCTCTAGAGGCAAAATGTAGCTG 59.441 47.826 21.23 0.00 0.00 4.24
3427 7392 4.122776 GAGCCATTTCTCTCGAGCAAATA 58.877 43.478 17.08 0.00 0.00 1.40
3433 7398 1.694150 TCTCTCGAGCAAATATGGGGG 59.306 52.381 7.81 0.00 0.00 5.40
3496 7461 7.492020 TGATTCTTGTGTTTTGAATTTGACTGG 59.508 33.333 0.00 0.00 31.49 4.00
3499 7464 7.831753 TCTTGTGTTTTGAATTTGACTGGTTA 58.168 30.769 0.00 0.00 0.00 2.85
3502 7467 7.776107 TGTGTTTTGAATTTGACTGGTTATGA 58.224 30.769 0.00 0.00 0.00 2.15
3519 7484 6.036577 GTTATGAACCATGTGGGAAACAAT 57.963 37.500 3.77 0.00 43.61 2.71
3616 7585 7.684670 TGCATTAGCTCTGTATTTTAAACGAG 58.315 34.615 0.00 0.00 42.74 4.18
3621 7590 5.932303 AGCTCTGTATTTTAAACGAGCAGAA 59.068 36.000 17.44 0.00 41.56 3.02
3622 7591 6.091441 AGCTCTGTATTTTAAACGAGCAGAAG 59.909 38.462 17.44 10.84 41.56 2.85
3623 7592 6.128526 GCTCTGTATTTTAAACGAGCAGAAGT 60.129 38.462 13.36 0.00 40.24 3.01
3624 7593 7.063074 GCTCTGTATTTTAAACGAGCAGAAGTA 59.937 37.037 13.36 0.00 40.24 2.24
3630 7599 6.973229 TTTAAACGAGCAGAAGTATTACCC 57.027 37.500 0.00 0.00 0.00 3.69
3631 7600 2.865343 ACGAGCAGAAGTATTACCCG 57.135 50.000 0.00 0.00 0.00 5.28
3632 7601 2.372264 ACGAGCAGAAGTATTACCCGA 58.628 47.619 0.00 0.00 0.00 5.14
3633 7602 2.756760 ACGAGCAGAAGTATTACCCGAA 59.243 45.455 0.00 0.00 0.00 4.30
3634 7603 3.383825 ACGAGCAGAAGTATTACCCGAAT 59.616 43.478 0.00 0.00 0.00 3.34
3635 7604 4.581824 ACGAGCAGAAGTATTACCCGAATA 59.418 41.667 0.00 0.00 0.00 1.75
3636 7605 5.068198 ACGAGCAGAAGTATTACCCGAATAA 59.932 40.000 0.00 0.00 31.66 1.40
3637 7606 5.981315 CGAGCAGAAGTATTACCCGAATAAA 59.019 40.000 0.00 0.00 31.66 1.40
3638 7607 6.074463 CGAGCAGAAGTATTACCCGAATAAAC 60.074 42.308 0.00 0.00 31.66 2.01
3639 7608 6.885922 AGCAGAAGTATTACCCGAATAAACT 58.114 36.000 0.00 0.00 31.66 2.66
3640 7609 6.761714 AGCAGAAGTATTACCCGAATAAACTG 59.238 38.462 0.00 0.00 33.99 3.16
3641 7610 6.511282 GCAGAAGTATTACCCGAATAAACTGC 60.511 42.308 0.00 0.00 40.76 4.40
3642 7611 6.537301 CAGAAGTATTACCCGAATAAACTGCA 59.463 38.462 0.00 0.00 31.66 4.41
3643 7612 7.226720 CAGAAGTATTACCCGAATAAACTGCAT 59.773 37.037 0.00 0.00 31.66 3.96
3644 7613 8.426489 AGAAGTATTACCCGAATAAACTGCATA 58.574 33.333 0.00 0.00 31.66 3.14
3645 7614 8.967664 AAGTATTACCCGAATAAACTGCATAA 57.032 30.769 0.00 0.00 31.66 1.90
3646 7615 8.374327 AGTATTACCCGAATAAACTGCATAAC 57.626 34.615 0.00 0.00 31.66 1.89
3647 7616 6.628919 ATTACCCGAATAAACTGCATAACC 57.371 37.500 0.00 0.00 0.00 2.85
3648 7617 3.958018 ACCCGAATAAACTGCATAACCA 58.042 40.909 0.00 0.00 0.00 3.67
3649 7618 4.337145 ACCCGAATAAACTGCATAACCAA 58.663 39.130 0.00 0.00 0.00 3.67
3650 7619 4.767928 ACCCGAATAAACTGCATAACCAAA 59.232 37.500 0.00 0.00 0.00 3.28
3651 7620 5.244178 ACCCGAATAAACTGCATAACCAAAA 59.756 36.000 0.00 0.00 0.00 2.44
3652 7621 5.575218 CCCGAATAAACTGCATAACCAAAAC 59.425 40.000 0.00 0.00 0.00 2.43
3653 7622 6.153067 CCGAATAAACTGCATAACCAAAACA 58.847 36.000 0.00 0.00 0.00 2.83
3654 7623 6.642950 CCGAATAAACTGCATAACCAAAACAA 59.357 34.615 0.00 0.00 0.00 2.83
3655 7624 7.169982 CCGAATAAACTGCATAACCAAAACAAA 59.830 33.333 0.00 0.00 0.00 2.83
3656 7625 8.543774 CGAATAAACTGCATAACCAAAACAAAA 58.456 29.630 0.00 0.00 0.00 2.44
3657 7626 9.644993 GAATAAACTGCATAACCAAAACAAAAC 57.355 29.630 0.00 0.00 0.00 2.43
3658 7627 8.956533 ATAAACTGCATAACCAAAACAAAACT 57.043 26.923 0.00 0.00 0.00 2.66
3659 7628 6.902224 AACTGCATAACCAAAACAAAACTC 57.098 33.333 0.00 0.00 0.00 3.01
3660 7629 5.040635 ACTGCATAACCAAAACAAAACTCG 58.959 37.500 0.00 0.00 0.00 4.18
3661 7630 3.799420 TGCATAACCAAAACAAAACTCGC 59.201 39.130 0.00 0.00 0.00 5.03
3662 7631 3.799420 GCATAACCAAAACAAAACTCGCA 59.201 39.130 0.00 0.00 0.00 5.10
3663 7632 4.268884 GCATAACCAAAACAAAACTCGCAA 59.731 37.500 0.00 0.00 0.00 4.85
3664 7633 5.220491 GCATAACCAAAACAAAACTCGCAAA 60.220 36.000 0.00 0.00 0.00 3.68
3665 7634 6.673316 GCATAACCAAAACAAAACTCGCAAAA 60.673 34.615 0.00 0.00 0.00 2.44
3666 7635 4.919677 ACCAAAACAAAACTCGCAAAAG 57.080 36.364 0.00 0.00 0.00 2.27
3667 7636 4.561105 ACCAAAACAAAACTCGCAAAAGA 58.439 34.783 0.00 0.00 0.00 2.52
3668 7637 4.991687 ACCAAAACAAAACTCGCAAAAGAA 59.008 33.333 0.00 0.00 0.00 2.52
3669 7638 5.467063 ACCAAAACAAAACTCGCAAAAGAAA 59.533 32.000 0.00 0.00 0.00 2.52
3670 7639 6.017852 ACCAAAACAAAACTCGCAAAAGAAAA 60.018 30.769 0.00 0.00 0.00 2.29
3671 7640 6.853362 CCAAAACAAAACTCGCAAAAGAAAAA 59.147 30.769 0.00 0.00 0.00 1.94
3866 7838 5.779806 AGACTACGACGGATTTTGATTTG 57.220 39.130 0.00 0.00 0.00 2.32
3868 7840 5.699458 AGACTACGACGGATTTTGATTTGTT 59.301 36.000 0.00 0.00 0.00 2.83
3869 7841 6.204108 AGACTACGACGGATTTTGATTTGTTT 59.796 34.615 0.00 0.00 0.00 2.83
3889 7861 8.850454 TTGTTTATCACTGTCAGCTTTTTAAC 57.150 30.769 0.00 0.00 0.00 2.01
3891 7863 9.332502 TGTTTATCACTGTCAGCTTTTTAACTA 57.667 29.630 0.00 0.00 0.00 2.24
3893 7865 8.547967 TTATCACTGTCAGCTTTTTAACTAGG 57.452 34.615 0.00 0.00 0.00 3.02
3896 7868 6.706270 TCACTGTCAGCTTTTTAACTAGGAAG 59.294 38.462 0.00 0.00 0.00 3.46
3897 7869 6.483640 CACTGTCAGCTTTTTAACTAGGAAGT 59.516 38.462 0.00 0.00 37.65 3.01
3907 7879 6.442541 TTTAACTAGGAAGTGAACCCATCA 57.557 37.500 0.00 0.00 35.62 3.07
3910 7882 1.366319 AGGAAGTGAACCCATCAGCT 58.634 50.000 0.00 0.00 39.19 4.24
4018 7991 4.292186 TCCAGGAAGAAAATCAGGTCAG 57.708 45.455 0.00 0.00 0.00 3.51
4030 10352 1.073284 TCAGGTCAGGGTTTTAGGCAC 59.927 52.381 0.00 0.00 0.00 5.01
4100 10422 4.880696 GGGATGTCAAGAAGAGGATTGAAG 59.119 45.833 0.00 0.00 37.19 3.02
4106 10428 7.006509 TGTCAAGAAGAGGATTGAAGGAATTT 58.993 34.615 0.00 0.00 37.19 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.865769 GGCGAATAATGTGCGTAGGG 59.134 55.000 0.00 0.00 0.00 3.53
62 68 2.672996 ACTGGTGTGAATGGCGGC 60.673 61.111 0.00 0.00 0.00 6.53
123 132 5.931441 ATCAGCCGAAATAATTGTCTAGC 57.069 39.130 0.00 0.00 0.00 3.42
152 161 3.506108 CTGGCCCAGCTTGAATCG 58.494 61.111 0.00 0.00 0.00 3.34
258 272 7.519649 CGGTAGGAGTAGGAGTAGAAAAATACG 60.520 44.444 0.00 0.00 0.00 3.06
266 289 1.069823 CGCGGTAGGAGTAGGAGTAGA 59.930 57.143 0.00 0.00 0.00 2.59
284 307 2.500509 TGTCATTTTGGTTGGTTCGC 57.499 45.000 0.00 0.00 0.00 4.70
328 3156 7.924103 ACTAAAAGAAGCAATTTTTGTACCG 57.076 32.000 6.42 0.00 35.06 4.02
339 3167 7.616313 TCAAAAGGGAAAACTAAAAGAAGCAA 58.384 30.769 0.00 0.00 0.00 3.91
365 3193 8.712363 CGTCCTCGTCATTCATATATTTTTCAT 58.288 33.333 0.00 0.00 0.00 2.57
399 3227 6.238703 GGACTGTTTTGTTAATACGGGAAACA 60.239 38.462 0.00 0.00 35.17 2.83
456 3284 2.607750 GTGGGGGAGCAGACAGGA 60.608 66.667 0.00 0.00 0.00 3.86
485 3316 0.998945 AGAGGAGAGGAGAGGAGGGG 60.999 65.000 0.00 0.00 0.00 4.79
486 3317 0.478507 GAGAGGAGAGGAGAGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
487 3318 0.478507 GGAGAGGAGAGGAGAGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
488 3319 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
489 3320 1.010793 AGAGGAGAGGAGAGGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
490 3321 1.522900 AGAGGAGAGGAGAGGAGAGG 58.477 60.000 0.00 0.00 0.00 3.69
491 3322 2.158608 GGAAGAGGAGAGGAGAGGAGAG 60.159 59.091 0.00 0.00 0.00 3.20
492 3323 1.850345 GGAAGAGGAGAGGAGAGGAGA 59.150 57.143 0.00 0.00 0.00 3.71
493 3324 1.133482 GGGAAGAGGAGAGGAGAGGAG 60.133 61.905 0.00 0.00 0.00 3.69
494 3325 0.930726 GGGAAGAGGAGAGGAGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
495 3326 0.467290 CGGGAAGAGGAGAGGAGAGG 60.467 65.000 0.00 0.00 0.00 3.69
496 3327 0.548989 TCGGGAAGAGGAGAGGAGAG 59.451 60.000 0.00 0.00 0.00 3.20
497 3328 0.548989 CTCGGGAAGAGGAGAGGAGA 59.451 60.000 0.00 0.00 43.20 3.71
498 3329 0.548989 TCTCGGGAAGAGGAGAGGAG 59.451 60.000 0.00 0.00 46.82 3.69
499 3330 1.000496 TTCTCGGGAAGAGGAGAGGA 59.000 55.000 0.00 0.00 46.82 3.71
500 3331 3.598273 TTCTCGGGAAGAGGAGAGG 57.402 57.895 0.00 0.00 46.82 3.69
562 4387 2.122167 GTCGGGAGCTCGTGAGGAT 61.122 63.158 7.83 0.00 0.00 3.24
661 4511 1.869242 GCAGCAAAACGCAGCGAAAG 61.869 55.000 24.65 9.31 43.74 2.62
663 4513 2.353376 GCAGCAAAACGCAGCGAA 60.353 55.556 24.65 0.00 43.74 4.70
825 4693 4.222810 AGAAAAGATTTTCCAAATCCGGGG 59.777 41.667 13.12 0.00 45.84 5.73
1242 5166 2.594592 AACAGGTTGTGGCGCTCC 60.595 61.111 7.64 2.67 0.00 4.70
2070 5994 0.111446 TAGCCTCCAGGATCTCCTCG 59.889 60.000 0.00 0.00 46.65 4.63
2145 6069 2.363306 AGTGGGAACTGTTGATGCAA 57.637 45.000 0.00 0.00 0.00 4.08
2160 6084 3.378427 GCAAGCTATTTACCTGGAAGTGG 59.622 47.826 0.00 0.00 0.00 4.00
2174 6098 3.669939 ATGTTACTTGGGGCAAGCTAT 57.330 42.857 0.00 0.00 44.43 2.97
2176 6100 3.089284 GTTATGTTACTTGGGGCAAGCT 58.911 45.455 0.00 0.00 44.43 3.74
2211 6136 8.950210 CATACTGTAACAGGAACATTGAAGAAT 58.050 33.333 0.00 0.00 35.51 2.40
2225 6150 9.084164 GGTGAAAGTACATACATACTGTAACAG 57.916 37.037 0.00 0.00 36.31 3.16
2230 6155 7.093068 TGGATGGTGAAAGTACATACATACTGT 60.093 37.037 0.00 0.00 35.53 3.55
2237 6162 4.881850 CCCTTGGATGGTGAAAGTACATAC 59.118 45.833 0.00 0.00 0.00 2.39
2238 6163 4.080015 CCCCTTGGATGGTGAAAGTACATA 60.080 45.833 0.00 0.00 0.00 2.29
2239 6164 3.309121 CCCCTTGGATGGTGAAAGTACAT 60.309 47.826 0.00 0.00 0.00 2.29
2242 6167 2.638325 TCCCCTTGGATGGTGAAAGTA 58.362 47.619 0.00 0.00 35.03 2.24
2244 6169 2.603075 TTCCCCTTGGATGGTGAAAG 57.397 50.000 0.00 0.00 41.40 2.62
2245 6170 3.336509 TTTTCCCCTTGGATGGTGAAA 57.663 42.857 0.00 0.00 41.40 2.69
2247 6172 2.178984 AGTTTTTCCCCTTGGATGGTGA 59.821 45.455 0.00 0.00 41.40 4.02
2249 6174 2.817839 CGAGTTTTTCCCCTTGGATGGT 60.818 50.000 0.00 0.00 41.40 3.55
2250 6175 1.818674 CGAGTTTTTCCCCTTGGATGG 59.181 52.381 0.00 0.00 41.40 3.51
2251 6176 2.514803 ACGAGTTTTTCCCCTTGGATG 58.485 47.619 0.00 0.00 41.40 3.51
2252 6177 2.971901 ACGAGTTTTTCCCCTTGGAT 57.028 45.000 0.00 0.00 41.40 3.41
2253 6178 4.533311 ACTATACGAGTTTTTCCCCTTGGA 59.467 41.667 0.00 0.00 34.67 3.53
2254 6179 4.840271 ACTATACGAGTTTTTCCCCTTGG 58.160 43.478 0.00 0.00 33.13 3.61
2255 6180 5.704053 ACAACTATACGAGTTTTTCCCCTTG 59.296 40.000 0.00 0.00 46.79 3.61
2256 6181 5.872963 ACAACTATACGAGTTTTTCCCCTT 58.127 37.500 0.00 0.00 46.79 3.95
2257 6182 5.494390 ACAACTATACGAGTTTTTCCCCT 57.506 39.130 0.00 0.00 46.79 4.79
2258 6183 7.767659 AGAATACAACTATACGAGTTTTTCCCC 59.232 37.037 0.00 0.00 46.79 4.81
2259 6184 8.713737 AGAATACAACTATACGAGTTTTTCCC 57.286 34.615 0.00 0.00 46.79 3.97
2266 6191 8.847196 TGCATCTAAGAATACAACTATACGAGT 58.153 33.333 0.00 0.00 41.56 4.18
2267 6192 9.119329 GTGCATCTAAGAATACAACTATACGAG 57.881 37.037 0.00 0.00 0.00 4.18
2268 6193 8.847196 AGTGCATCTAAGAATACAACTATACGA 58.153 33.333 0.00 0.00 0.00 3.43
2435 6379 6.884836 AGGGACCAAAAATAAGCAAGTAGTAG 59.115 38.462 0.00 0.00 0.00 2.57
2436 6380 6.786122 AGGGACCAAAAATAAGCAAGTAGTA 58.214 36.000 0.00 0.00 0.00 1.82
2437 6381 5.641155 AGGGACCAAAAATAAGCAAGTAGT 58.359 37.500 0.00 0.00 0.00 2.73
2524 6483 2.762535 TTAACTTGAGGGCTTCGGAG 57.237 50.000 0.00 0.00 0.00 4.63
2525 6484 2.939640 GCATTAACTTGAGGGCTTCGGA 60.940 50.000 0.00 0.00 0.00 4.55
2528 6487 3.127721 GTCAGCATTAACTTGAGGGCTTC 59.872 47.826 0.00 0.00 0.00 3.86
2529 6488 3.084786 GTCAGCATTAACTTGAGGGCTT 58.915 45.455 0.00 0.00 0.00 4.35
2531 6490 2.436417 TGTCAGCATTAACTTGAGGGC 58.564 47.619 0.00 0.00 0.00 5.19
2532 6491 5.404946 CATTTGTCAGCATTAACTTGAGGG 58.595 41.667 0.00 0.00 0.00 4.30
2533 6492 5.183713 TCCATTTGTCAGCATTAACTTGAGG 59.816 40.000 0.00 0.00 0.00 3.86
2534 6493 6.088824 GTCCATTTGTCAGCATTAACTTGAG 58.911 40.000 0.00 0.00 0.00 3.02
2535 6494 5.534278 TGTCCATTTGTCAGCATTAACTTGA 59.466 36.000 0.00 0.00 0.00 3.02
2536 6495 5.771469 TGTCCATTTGTCAGCATTAACTTG 58.229 37.500 0.00 0.00 0.00 3.16
2546 6505 8.090214 ACTTTGGATAAATTGTCCATTTGTCAG 58.910 33.333 12.22 5.12 44.75 3.51
2561 6520 5.815581 ACATGACAGCCTACTTTGGATAAA 58.184 37.500 0.00 0.00 0.00 1.40
2562 6521 5.435686 ACATGACAGCCTACTTTGGATAA 57.564 39.130 0.00 0.00 0.00 1.75
2690 6651 5.567138 GCATATGTGAGCCAACTAAGTTT 57.433 39.130 4.29 0.00 0.00 2.66
2733 6697 9.869757 GTATCTTATTAAGCCAACAACCATTTT 57.130 29.630 0.00 0.00 0.00 1.82
2866 6830 1.446272 GCCGTTCTGTTCTAGCGCT 60.446 57.895 17.26 17.26 0.00 5.92
2926 6890 3.763897 TCTCGGAGAACATCTTCATCACA 59.236 43.478 4.96 0.00 34.09 3.58
3025 6989 4.021925 GCCCACTTCAGCCTCCGT 62.022 66.667 0.00 0.00 0.00 4.69
3312 7277 2.433318 AAGGCGCTCGCTCTCAAC 60.433 61.111 7.64 0.00 41.60 3.18
3433 7398 4.559386 CGAAATCGTGCTCGGCGC 62.559 66.667 8.49 0.00 37.69 6.53
3450 7415 8.992073 AGAATCAAAGCCATAACATTTCAAAAC 58.008 29.630 0.00 0.00 0.00 2.43
3453 7418 8.149647 ACAAGAATCAAAGCCATAACATTTCAA 58.850 29.630 0.00 0.00 0.00 2.69
3463 7428 5.916318 TCAAAACACAAGAATCAAAGCCAT 58.084 33.333 0.00 0.00 0.00 4.40
3464 7429 5.336150 TCAAAACACAAGAATCAAAGCCA 57.664 34.783 0.00 0.00 0.00 4.75
3496 7461 5.461032 TTGTTTCCCACATGGTTCATAAC 57.539 39.130 0.00 0.00 34.43 1.89
3499 7464 5.332743 AGTATTGTTTCCCACATGGTTCAT 58.667 37.500 0.00 0.00 34.43 2.57
3502 7467 7.122650 CAGATAAGTATTGTTTCCCACATGGTT 59.877 37.037 0.00 0.00 34.43 3.67
3519 7484 9.716531 GGATTGACATCATCATTCAGATAAGTA 57.283 33.333 0.00 0.00 38.80 2.24
3613 7582 3.431922 TTCGGGTAATACTTCTGCTCG 57.568 47.619 0.00 0.00 0.00 5.03
3616 7585 6.511282 GCAGTTTATTCGGGTAATACTTCTGC 60.511 42.308 0.00 0.00 38.94 4.26
3621 7590 7.443272 GGTTATGCAGTTTATTCGGGTAATACT 59.557 37.037 0.00 0.00 29.54 2.12
3622 7591 7.227116 TGGTTATGCAGTTTATTCGGGTAATAC 59.773 37.037 0.00 0.00 29.54 1.89
3623 7592 7.281098 TGGTTATGCAGTTTATTCGGGTAATA 58.719 34.615 0.00 0.00 0.00 0.98
3624 7593 6.123651 TGGTTATGCAGTTTATTCGGGTAAT 58.876 36.000 0.00 0.00 0.00 1.89
3630 7599 7.630470 TTGTTTTGGTTATGCAGTTTATTCG 57.370 32.000 0.00 0.00 0.00 3.34
3631 7600 9.644993 GTTTTGTTTTGGTTATGCAGTTTATTC 57.355 29.630 0.00 0.00 0.00 1.75
3632 7601 9.389755 AGTTTTGTTTTGGTTATGCAGTTTATT 57.610 25.926 0.00 0.00 0.00 1.40
3633 7602 8.956533 AGTTTTGTTTTGGTTATGCAGTTTAT 57.043 26.923 0.00 0.00 0.00 1.40
3634 7603 7.221067 CGAGTTTTGTTTTGGTTATGCAGTTTA 59.779 33.333 0.00 0.00 0.00 2.01
3635 7604 6.035542 CGAGTTTTGTTTTGGTTATGCAGTTT 59.964 34.615 0.00 0.00 0.00 2.66
3636 7605 5.518487 CGAGTTTTGTTTTGGTTATGCAGTT 59.482 36.000 0.00 0.00 0.00 3.16
3637 7606 5.040635 CGAGTTTTGTTTTGGTTATGCAGT 58.959 37.500 0.00 0.00 0.00 4.40
3638 7607 4.085107 GCGAGTTTTGTTTTGGTTATGCAG 60.085 41.667 0.00 0.00 0.00 4.41
3639 7608 3.799420 GCGAGTTTTGTTTTGGTTATGCA 59.201 39.130 0.00 0.00 0.00 3.96
3640 7609 3.799420 TGCGAGTTTTGTTTTGGTTATGC 59.201 39.130 0.00 0.00 0.00 3.14
3641 7610 5.957910 TTGCGAGTTTTGTTTTGGTTATG 57.042 34.783 0.00 0.00 0.00 1.90
3642 7611 6.814146 TCTTTTGCGAGTTTTGTTTTGGTTAT 59.186 30.769 0.00 0.00 0.00 1.89
3643 7612 6.157211 TCTTTTGCGAGTTTTGTTTTGGTTA 58.843 32.000 0.00 0.00 0.00 2.85
3644 7613 4.991687 TCTTTTGCGAGTTTTGTTTTGGTT 59.008 33.333 0.00 0.00 0.00 3.67
3645 7614 4.561105 TCTTTTGCGAGTTTTGTTTTGGT 58.439 34.783 0.00 0.00 0.00 3.67
3646 7615 5.523013 TTCTTTTGCGAGTTTTGTTTTGG 57.477 34.783 0.00 0.00 0.00 3.28
3647 7616 7.828685 TTTTTCTTTTGCGAGTTTTGTTTTG 57.171 28.000 0.00 0.00 0.00 2.44
3692 7661 3.008266 TCGGGTAATCGGAACTCCTTTTT 59.992 43.478 0.00 0.00 0.00 1.94
3693 7662 2.568509 TCGGGTAATCGGAACTCCTTTT 59.431 45.455 0.00 0.00 0.00 2.27
3694 7663 2.181975 TCGGGTAATCGGAACTCCTTT 58.818 47.619 0.00 0.00 0.00 3.11
3695 7664 1.856629 TCGGGTAATCGGAACTCCTT 58.143 50.000 0.00 0.00 0.00 3.36
3696 7665 1.856629 TTCGGGTAATCGGAACTCCT 58.143 50.000 0.00 0.00 31.08 3.69
3697 7666 2.904697 ATTCGGGTAATCGGAACTCC 57.095 50.000 0.00 0.00 37.49 3.85
3698 7667 5.233689 CAGTTTATTCGGGTAATCGGAACTC 59.766 44.000 0.00 0.00 37.49 3.01
3699 7668 5.114081 CAGTTTATTCGGGTAATCGGAACT 58.886 41.667 0.00 0.00 37.49 3.01
3700 7669 4.260497 GCAGTTTATTCGGGTAATCGGAAC 60.260 45.833 0.00 0.00 37.49 3.62
3701 7670 3.872771 GCAGTTTATTCGGGTAATCGGAA 59.127 43.478 0.00 0.00 38.71 4.30
3702 7671 3.118702 TGCAGTTTATTCGGGTAATCGGA 60.119 43.478 0.00 0.00 0.00 4.55
3703 7672 3.199677 TGCAGTTTATTCGGGTAATCGG 58.800 45.455 0.00 0.00 0.00 4.18
3704 7673 6.202188 AGTTATGCAGTTTATTCGGGTAATCG 59.798 38.462 0.00 0.00 0.00 3.34
3705 7674 7.492352 AGTTATGCAGTTTATTCGGGTAATC 57.508 36.000 0.00 0.00 0.00 1.75
3706 7675 8.967664 TTAGTTATGCAGTTTATTCGGGTAAT 57.032 30.769 0.00 0.00 0.00 1.89
3707 7676 8.789825 TTTAGTTATGCAGTTTATTCGGGTAA 57.210 30.769 0.00 0.00 0.00 2.85
3708 7677 8.667463 GTTTTAGTTATGCAGTTTATTCGGGTA 58.333 33.333 0.00 0.00 0.00 3.69
3709 7678 7.175293 TGTTTTAGTTATGCAGTTTATTCGGGT 59.825 33.333 0.00 0.00 0.00 5.28
3710 7679 7.531716 TGTTTTAGTTATGCAGTTTATTCGGG 58.468 34.615 0.00 0.00 0.00 5.14
3711 7680 8.958175 TTGTTTTAGTTATGCAGTTTATTCGG 57.042 30.769 0.00 0.00 0.00 4.30
3866 7838 9.813080 CTAGTTAAAAAGCTGACAGTGATAAAC 57.187 33.333 3.99 3.06 0.00 2.01
3868 7840 8.372459 TCCTAGTTAAAAAGCTGACAGTGATAA 58.628 33.333 3.99 0.00 0.00 1.75
3869 7841 7.903145 TCCTAGTTAAAAAGCTGACAGTGATA 58.097 34.615 3.99 0.00 0.00 2.15
3889 7861 2.503356 AGCTGATGGGTTCACTTCCTAG 59.497 50.000 0.00 0.00 0.00 3.02
3891 7863 1.366319 AGCTGATGGGTTCACTTCCT 58.634 50.000 0.00 0.00 0.00 3.36
3893 7865 5.904362 AATTTAGCTGATGGGTTCACTTC 57.096 39.130 0.00 0.00 0.00 3.01
3896 7868 7.391148 TTCTTAATTTAGCTGATGGGTTCAC 57.609 36.000 0.00 0.00 0.00 3.18
3897 7869 7.833682 TGATTCTTAATTTAGCTGATGGGTTCA 59.166 33.333 0.00 0.00 0.00 3.18
3907 7879 7.466746 TGTTTGCCTGATTCTTAATTTAGCT 57.533 32.000 0.00 0.00 0.00 3.32
3910 7882 8.855110 TCTGTTGTTTGCCTGATTCTTAATTTA 58.145 29.630 0.00 0.00 0.00 1.40
4018 7991 4.509970 GTGAAATTTGTGTGCCTAAAACCC 59.490 41.667 0.00 0.00 0.00 4.11
4030 10352 4.618489 GGAGAAGAATGCGTGAAATTTGTG 59.382 41.667 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.