Multiple sequence alignment - TraesCS1D01G390300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G390300 chr1D 100.000 2499 0 0 1 2499 461788664 461786166 0.000000e+00 4615.0
1 TraesCS1D01G390300 chr1D 89.697 1223 92 10 790 2003 461823132 461821935 0.000000e+00 1530.0
2 TraesCS1D01G390300 chr1D 89.744 156 9 6 575 723 461824373 461824218 2.540000e-45 193.0
3 TraesCS1D01G390300 chr1B 91.701 1916 117 21 608 2499 635000864 634998967 0.000000e+00 2619.0
4 TraesCS1D01G390300 chr1B 94.421 1685 87 5 783 2463 635140466 635138785 0.000000e+00 2584.0
5 TraesCS1D01G390300 chr1B 91.908 1829 110 15 693 2499 634785294 634783482 0.000000e+00 2523.0
6 TraesCS1D01G390300 chr1B 90.607 1235 84 12 783 2004 634866523 634865308 0.000000e+00 1609.0
7 TraesCS1D01G390300 chr1B 90.526 1235 85 12 783 2004 634935077 634933862 0.000000e+00 1604.0
8 TraesCS1D01G390300 chr1B 84.123 359 46 6 1742 2094 635087902 635087549 1.110000e-88 337.0
9 TraesCS1D01G390300 chr1B 92.000 225 12 4 503 723 635141721 635141499 6.710000e-81 311.0
10 TraesCS1D01G390300 chr1B 92.857 196 13 1 503 697 634852147 634851952 1.460000e-72 283.0
11 TraesCS1D01G390300 chr1B 92.857 196 13 1 503 697 634920884 634920689 1.460000e-72 283.0
12 TraesCS1D01G390300 chr1B 87.500 72 3 1 719 784 634866929 634866858 7.410000e-11 78.7
13 TraesCS1D01G390300 chr1B 87.500 72 3 1 719 784 634935483 634935412 7.410000e-11 78.7
14 TraesCS1D01G390300 chr1B 87.500 72 3 1 719 784 635140870 635140799 7.410000e-11 78.7
15 TraesCS1D01G390300 chr6B 91.621 1647 97 19 858 2493 661863222 661861606 0.000000e+00 2239.0
16 TraesCS1D01G390300 chrUn 90.566 1166 78 12 783 1935 350030104 350031250 0.000000e+00 1515.0
17 TraesCS1D01G390300 chrUn 87.500 72 3 1 719 784 350029698 350029769 7.410000e-11 78.7
18 TraesCS1D01G390300 chr1A 89.480 903 75 6 790 1689 553466062 553465177 0.000000e+00 1123.0
19 TraesCS1D01G390300 chr1A 90.549 328 25 2 1682 2003 553464877 553464550 1.780000e-116 429.0
20 TraesCS1D01G390300 chr1A 91.503 306 17 5 1568 1866 553068397 553068094 1.790000e-111 412.0
21 TraesCS1D01G390300 chr1A 90.667 225 17 3 503 723 553467434 553467210 1.880000e-76 296.0
22 TraesCS1D01G390300 chr1A 85.946 185 22 1 58 238 553133775 553133959 7.050000e-46 195.0
23 TraesCS1D01G390300 chr1A 93.220 59 4 0 1 59 539877782 539877840 1.230000e-13 87.9
24 TraesCS1D01G390300 chr1A 100.000 35 0 0 615 649 553134054 553134088 5.770000e-07 65.8
25 TraesCS1D01G390300 chr6A 98.214 56 1 0 3 58 9195427 9195482 5.690000e-17 99.0
26 TraesCS1D01G390300 chr2B 98.148 54 1 0 4 57 324571277 324571330 7.360000e-16 95.3
27 TraesCS1D01G390300 chr2B 96.429 56 2 0 3 58 332767609 332767664 2.650000e-15 93.5
28 TraesCS1D01G390300 chr3B 94.915 59 2 1 4 62 635978246 635978189 9.520000e-15 91.6
29 TraesCS1D01G390300 chr3B 88.235 68 7 1 4 70 60589475 60589408 2.060000e-11 80.5
30 TraesCS1D01G390300 chr7D 96.296 54 2 0 4 57 19194332 19194279 3.420000e-14 89.8
31 TraesCS1D01G390300 chr2A 94.737 57 2 1 1 57 598965124 598965069 1.230000e-13 87.9
32 TraesCS1D01G390300 chr3A 93.220 59 3 1 3 61 387180367 387180424 4.430000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G390300 chr1D 461786166 461788664 2498 True 4615.000000 4615 100.0000 1 2499 1 chr1D.!!$R1 2498
1 TraesCS1D01G390300 chr1D 461821935 461824373 2438 True 861.500000 1530 89.7205 575 2003 2 chr1D.!!$R2 1428
2 TraesCS1D01G390300 chr1B 634998967 635000864 1897 True 2619.000000 2619 91.7010 608 2499 1 chr1B.!!$R4 1891
3 TraesCS1D01G390300 chr1B 634783482 634785294 1812 True 2523.000000 2523 91.9080 693 2499 1 chr1B.!!$R1 1806
4 TraesCS1D01G390300 chr1B 635138785 635141721 2936 True 991.233333 2584 91.3070 503 2463 3 chr1B.!!$R8 1960
5 TraesCS1D01G390300 chr1B 634865308 634866929 1621 True 843.850000 1609 89.0535 719 2004 2 chr1B.!!$R6 1285
6 TraesCS1D01G390300 chr1B 634933862 634935483 1621 True 841.350000 1604 89.0130 719 2004 2 chr1B.!!$R7 1285
7 TraesCS1D01G390300 chr6B 661861606 661863222 1616 True 2239.000000 2239 91.6210 858 2493 1 chr6B.!!$R1 1635
8 TraesCS1D01G390300 chrUn 350029698 350031250 1552 False 796.850000 1515 89.0330 719 1935 2 chrUn.!!$F1 1216
9 TraesCS1D01G390300 chr1A 553464550 553467434 2884 True 616.000000 1123 90.2320 503 2003 3 chr1A.!!$R2 1500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.035056 CCACCTAGTTTGGGCCTCTG 60.035 60.0 4.53 0.00 0.0 3.35 F
467 468 0.035056 CACCTAGTTTGGGCCTCTGG 60.035 60.0 4.53 2.79 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 3606 1.102978 ACAAACCTGCACAGTTGTCC 58.897 50.000 0.0 0.0 28.08 4.02 R
1958 4580 2.017049 GCAAACTCGGTAGGCAATCAT 58.983 47.619 0.0 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.729227 TTTCTTTGGAAAAGCGGAAAGT 57.271 36.364 0.00 0.00 38.35 2.66
35 36 4.729227 TTCTTTGGAAAAGCGGAAAGTT 57.271 36.364 0.00 0.00 0.00 2.66
36 37 4.729227 TCTTTGGAAAAGCGGAAAGTTT 57.271 36.364 0.00 0.00 0.00 2.66
37 38 4.678622 TCTTTGGAAAAGCGGAAAGTTTC 58.321 39.130 7.09 7.09 0.00 2.78
38 39 3.446310 TTGGAAAAGCGGAAAGTTTCC 57.554 42.857 22.69 22.69 46.99 3.13
53 54 5.728637 AAGTTTCCACTCCATTTTCATCC 57.271 39.130 0.00 0.00 30.45 3.51
54 55 4.089361 AGTTTCCACTCCATTTTCATCCC 58.911 43.478 0.00 0.00 0.00 3.85
55 56 4.089361 GTTTCCACTCCATTTTCATCCCT 58.911 43.478 0.00 0.00 0.00 4.20
56 57 5.015178 AGTTTCCACTCCATTTTCATCCCTA 59.985 40.000 0.00 0.00 0.00 3.53
57 58 5.528600 TTCCACTCCATTTTCATCCCTAA 57.471 39.130 0.00 0.00 0.00 2.69
58 59 4.855340 TCCACTCCATTTTCATCCCTAAC 58.145 43.478 0.00 0.00 0.00 2.34
59 60 4.540099 TCCACTCCATTTTCATCCCTAACT 59.460 41.667 0.00 0.00 0.00 2.24
60 61 5.015178 TCCACTCCATTTTCATCCCTAACTT 59.985 40.000 0.00 0.00 0.00 2.66
61 62 5.126061 CCACTCCATTTTCATCCCTAACTTG 59.874 44.000 0.00 0.00 0.00 3.16
62 63 5.126061 CACTCCATTTTCATCCCTAACTTGG 59.874 44.000 0.00 0.00 0.00 3.61
63 64 5.015178 ACTCCATTTTCATCCCTAACTTGGA 59.985 40.000 0.00 0.00 36.05 3.53
64 65 5.261216 TCCATTTTCATCCCTAACTTGGAC 58.739 41.667 0.00 0.00 33.94 4.02
65 66 4.096382 CCATTTTCATCCCTAACTTGGACG 59.904 45.833 0.00 0.00 33.94 4.79
66 67 4.360951 TTTTCATCCCTAACTTGGACGT 57.639 40.909 0.00 0.00 33.94 4.34
67 68 3.604875 TTCATCCCTAACTTGGACGTC 57.395 47.619 7.13 7.13 33.94 4.34
68 69 2.531771 TCATCCCTAACTTGGACGTCA 58.468 47.619 18.91 0.27 33.94 4.35
69 70 2.232941 TCATCCCTAACTTGGACGTCAC 59.767 50.000 18.91 7.49 33.94 3.67
70 71 0.971386 TCCCTAACTTGGACGTCACC 59.029 55.000 18.91 1.40 0.00 4.02
71 72 0.682852 CCCTAACTTGGACGTCACCA 59.317 55.000 18.91 4.64 38.24 4.17
72 73 1.278127 CCCTAACTTGGACGTCACCAT 59.722 52.381 18.91 1.63 39.82 3.55
73 74 2.618053 CCTAACTTGGACGTCACCATC 58.382 52.381 18.91 0.00 39.82 3.51
74 75 2.259618 CTAACTTGGACGTCACCATCG 58.740 52.381 18.91 4.89 39.82 3.84
75 76 0.949105 AACTTGGACGTCACCATCGC 60.949 55.000 18.91 0.00 39.82 4.58
76 77 1.374125 CTTGGACGTCACCATCGCA 60.374 57.895 18.91 0.65 39.82 5.10
77 78 0.740868 CTTGGACGTCACCATCGCAT 60.741 55.000 18.91 0.00 39.82 4.73
78 79 0.533032 TTGGACGTCACCATCGCATA 59.467 50.000 18.91 0.00 39.82 3.14
79 80 0.179121 TGGACGTCACCATCGCATAC 60.179 55.000 18.91 0.00 34.77 2.39
80 81 1.206745 GGACGTCACCATCGCATACG 61.207 60.000 18.91 0.00 42.01 3.06
81 82 1.509463 ACGTCACCATCGCATACGT 59.491 52.632 0.00 0.00 41.55 3.57
82 83 0.800683 ACGTCACCATCGCATACGTG 60.801 55.000 0.00 0.00 44.34 4.49
83 84 1.479420 CGTCACCATCGCATACGTGG 61.479 60.000 0.00 5.68 42.49 4.94
85 86 4.513519 ACCATCGCATACGTGGTG 57.486 55.556 10.55 0.00 45.57 4.17
86 87 1.813753 ACCATCGCATACGTGGTGC 60.814 57.895 15.32 15.32 45.57 5.01
87 88 1.813337 CCATCGCATACGTGGTGCA 60.813 57.895 22.16 12.72 42.62 4.57
88 89 1.637934 CATCGCATACGTGGTGCAG 59.362 57.895 22.16 16.08 42.62 4.41
89 90 1.521457 ATCGCATACGTGGTGCAGG 60.521 57.895 22.16 10.83 42.62 4.85
90 91 1.955495 ATCGCATACGTGGTGCAGGA 61.955 55.000 22.16 14.68 42.62 3.86
91 92 1.739929 CGCATACGTGGTGCAGGAA 60.740 57.895 22.16 0.00 42.62 3.36
92 93 1.295357 CGCATACGTGGTGCAGGAAA 61.295 55.000 22.16 0.00 42.62 3.13
93 94 1.094785 GCATACGTGGTGCAGGAAAT 58.905 50.000 19.02 0.00 42.08 2.17
94 95 1.202177 GCATACGTGGTGCAGGAAATG 60.202 52.381 19.02 3.53 42.08 2.32
95 96 1.401552 CATACGTGGTGCAGGAAATGG 59.598 52.381 0.00 0.00 0.00 3.16
96 97 0.687920 TACGTGGTGCAGGAAATGGA 59.312 50.000 0.00 0.00 0.00 3.41
97 98 0.606401 ACGTGGTGCAGGAAATGGAG 60.606 55.000 0.00 0.00 0.00 3.86
98 99 1.308069 CGTGGTGCAGGAAATGGAGG 61.308 60.000 0.00 0.00 0.00 4.30
99 100 0.251341 GTGGTGCAGGAAATGGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
100 101 0.038166 TGGTGCAGGAAATGGAGGTC 59.962 55.000 0.00 0.00 0.00 3.85
101 102 0.681243 GGTGCAGGAAATGGAGGTCC 60.681 60.000 0.00 0.00 0.00 4.46
102 103 1.026718 GTGCAGGAAATGGAGGTCCG 61.027 60.000 0.00 0.00 39.06 4.79
103 104 1.452108 GCAGGAAATGGAGGTCCGG 60.452 63.158 0.00 0.00 39.06 5.14
104 105 1.224592 CAGGAAATGGAGGTCCGGG 59.775 63.158 0.00 0.00 39.06 5.73
105 106 1.229853 AGGAAATGGAGGTCCGGGT 60.230 57.895 0.00 0.00 39.06 5.28
106 107 1.223763 GGAAATGGAGGTCCGGGTC 59.776 63.158 0.00 0.00 39.43 4.46
107 108 1.153429 GAAATGGAGGTCCGGGTCG 60.153 63.158 0.00 0.00 39.43 4.79
108 109 1.610554 GAAATGGAGGTCCGGGTCGA 61.611 60.000 0.00 0.00 39.43 4.20
109 110 1.896122 AAATGGAGGTCCGGGTCGAC 61.896 60.000 7.13 7.13 39.43 4.20
112 113 3.507009 GAGGTCCGGGTCGACGAG 61.507 72.222 9.92 5.68 35.47 4.18
131 132 3.011517 GGCTGGCCTCTCCCTCAA 61.012 66.667 3.32 0.00 0.00 3.02
132 133 2.606587 GGCTGGCCTCTCCCTCAAA 61.607 63.158 3.32 0.00 0.00 2.69
133 134 1.611965 GCTGGCCTCTCCCTCAAAT 59.388 57.895 3.32 0.00 0.00 2.32
134 135 0.750911 GCTGGCCTCTCCCTCAAATG 60.751 60.000 3.32 0.00 0.00 2.32
135 136 0.622665 CTGGCCTCTCCCTCAAATGT 59.377 55.000 3.32 0.00 0.00 2.71
136 137 1.005215 CTGGCCTCTCCCTCAAATGTT 59.995 52.381 3.32 0.00 0.00 2.71
137 138 2.239654 CTGGCCTCTCCCTCAAATGTTA 59.760 50.000 3.32 0.00 0.00 2.41
138 139 2.647299 TGGCCTCTCCCTCAAATGTTAA 59.353 45.455 3.32 0.00 0.00 2.01
139 140 3.282885 GGCCTCTCCCTCAAATGTTAAG 58.717 50.000 0.00 0.00 0.00 1.85
140 141 3.282885 GCCTCTCCCTCAAATGTTAAGG 58.717 50.000 0.00 0.00 0.00 2.69
141 142 3.054361 GCCTCTCCCTCAAATGTTAAGGA 60.054 47.826 0.00 0.00 31.44 3.36
142 143 4.567747 GCCTCTCCCTCAAATGTTAAGGAA 60.568 45.833 0.00 0.00 31.44 3.36
143 144 5.189180 CCTCTCCCTCAAATGTTAAGGAAG 58.811 45.833 0.00 0.00 31.44 3.46
144 145 5.280727 CCTCTCCCTCAAATGTTAAGGAAGT 60.281 44.000 0.00 0.00 31.44 3.01
145 146 5.805728 TCTCCCTCAAATGTTAAGGAAGTC 58.194 41.667 0.00 0.00 31.44 3.01
146 147 5.309543 TCTCCCTCAAATGTTAAGGAAGTCA 59.690 40.000 0.00 0.00 31.44 3.41
147 148 5.947663 TCCCTCAAATGTTAAGGAAGTCAA 58.052 37.500 0.00 0.00 31.44 3.18
148 149 6.003950 TCCCTCAAATGTTAAGGAAGTCAAG 58.996 40.000 0.00 0.00 31.44 3.02
149 150 5.335976 CCCTCAAATGTTAAGGAAGTCAAGC 60.336 44.000 0.00 0.00 31.44 4.01
150 151 5.474876 CCTCAAATGTTAAGGAAGTCAAGCT 59.525 40.000 0.00 0.00 31.44 3.74
151 152 6.348868 CCTCAAATGTTAAGGAAGTCAAGCTC 60.349 42.308 0.00 0.00 31.44 4.09
152 153 5.179368 TCAAATGTTAAGGAAGTCAAGCTCG 59.821 40.000 0.00 0.00 0.00 5.03
153 154 2.413837 TGTTAAGGAAGTCAAGCTCGC 58.586 47.619 0.00 0.00 0.00 5.03
154 155 1.390463 GTTAAGGAAGTCAAGCTCGCG 59.610 52.381 0.00 0.00 0.00 5.87
155 156 0.108804 TAAGGAAGTCAAGCTCGCGG 60.109 55.000 6.13 0.00 0.00 6.46
156 157 2.048127 GGAAGTCAAGCTCGCGGT 60.048 61.111 6.13 0.00 0.00 5.68
157 158 1.668151 GGAAGTCAAGCTCGCGGTT 60.668 57.895 6.13 0.00 0.00 4.44
158 159 1.627550 GGAAGTCAAGCTCGCGGTTC 61.628 60.000 6.13 0.00 0.00 3.62
159 160 0.667792 GAAGTCAAGCTCGCGGTTCT 60.668 55.000 6.13 0.00 0.00 3.01
160 161 0.249911 AAGTCAAGCTCGCGGTTCTT 60.250 50.000 6.13 4.34 0.00 2.52
161 162 0.946221 AGTCAAGCTCGCGGTTCTTG 60.946 55.000 21.34 21.34 38.73 3.02
162 163 1.069090 TCAAGCTCGCGGTTCTTGT 59.931 52.632 24.09 0.64 38.56 3.16
163 164 0.944311 TCAAGCTCGCGGTTCTTGTC 60.944 55.000 24.09 2.67 38.56 3.18
164 165 2.022129 AAGCTCGCGGTTCTTGTCG 61.022 57.895 6.13 0.00 0.00 4.35
165 166 2.694829 AAGCTCGCGGTTCTTGTCGT 62.695 55.000 6.13 0.00 0.00 4.34
166 167 2.717809 GCTCGCGGTTCTTGTCGTC 61.718 63.158 6.13 0.00 0.00 4.20
167 168 2.426183 CTCGCGGTTCTTGTCGTCG 61.426 63.158 6.13 0.00 0.00 5.12
168 169 4.117372 CGCGGTTCTTGTCGTCGC 62.117 66.667 0.00 0.00 42.51 5.19
169 170 4.117372 GCGGTTCTTGTCGTCGCG 62.117 66.667 0.00 0.00 37.12 5.87
170 171 3.467119 CGGTTCTTGTCGTCGCGG 61.467 66.667 6.13 0.00 0.00 6.46
171 172 3.110178 GGTTCTTGTCGTCGCGGG 61.110 66.667 6.13 0.00 0.00 6.13
172 173 3.774702 GTTCTTGTCGTCGCGGGC 61.775 66.667 6.13 0.00 0.00 6.13
173 174 4.287781 TTCTTGTCGTCGCGGGCA 62.288 61.111 6.13 0.00 0.00 5.36
174 175 3.583276 TTCTTGTCGTCGCGGGCAT 62.583 57.895 6.13 0.00 0.00 4.40
175 176 2.202690 CTTGTCGTCGCGGGCATA 60.203 61.111 6.13 0.00 0.00 3.14
176 177 2.202690 TTGTCGTCGCGGGCATAG 60.203 61.111 6.13 0.00 0.00 2.23
177 178 4.865761 TGTCGTCGCGGGCATAGC 62.866 66.667 6.13 0.00 0.00 2.97
178 179 4.865761 GTCGTCGCGGGCATAGCA 62.866 66.667 6.13 0.00 34.19 3.49
179 180 4.136511 TCGTCGCGGGCATAGCAA 62.137 61.111 6.13 0.00 34.19 3.91
180 181 3.192230 CGTCGCGGGCATAGCAAA 61.192 61.111 6.13 0.00 34.19 3.68
181 182 2.745785 CGTCGCGGGCATAGCAAAA 61.746 57.895 6.13 0.00 34.19 2.44
182 183 1.062525 GTCGCGGGCATAGCAAAAG 59.937 57.895 6.13 0.00 34.19 2.27
183 184 1.078778 TCGCGGGCATAGCAAAAGA 60.079 52.632 6.13 0.00 34.19 2.52
184 185 0.675208 TCGCGGGCATAGCAAAAGAA 60.675 50.000 6.13 0.00 34.19 2.52
185 186 0.248215 CGCGGGCATAGCAAAAGAAG 60.248 55.000 0.00 0.00 34.19 2.85
186 187 0.526310 GCGGGCATAGCAAAAGAAGC 60.526 55.000 0.00 0.00 34.19 3.86
187 188 0.101219 CGGGCATAGCAAAAGAAGCC 59.899 55.000 0.00 0.00 41.29 4.35
188 189 1.185315 GGGCATAGCAAAAGAAGCCA 58.815 50.000 0.00 0.00 43.72 4.75
189 190 1.135721 GGGCATAGCAAAAGAAGCCAG 59.864 52.381 0.00 0.00 43.72 4.85
190 191 2.094675 GGCATAGCAAAAGAAGCCAGA 58.905 47.619 0.00 0.00 41.63 3.86
191 192 2.159324 GGCATAGCAAAAGAAGCCAGAC 60.159 50.000 0.00 0.00 41.63 3.51
192 193 2.489329 GCATAGCAAAAGAAGCCAGACA 59.511 45.455 0.00 0.00 0.00 3.41
193 194 3.427233 GCATAGCAAAAGAAGCCAGACAG 60.427 47.826 0.00 0.00 0.00 3.51
194 195 1.613836 AGCAAAAGAAGCCAGACAGG 58.386 50.000 0.00 0.00 41.84 4.00
195 196 1.143684 AGCAAAAGAAGCCAGACAGGA 59.856 47.619 0.00 0.00 41.22 3.86
196 197 1.268079 GCAAAAGAAGCCAGACAGGAC 59.732 52.381 0.00 0.00 41.22 3.85
197 198 1.882623 CAAAAGAAGCCAGACAGGACC 59.117 52.381 0.00 0.00 41.22 4.46
198 199 0.035458 AAAGAAGCCAGACAGGACCG 59.965 55.000 0.00 0.00 41.22 4.79
199 200 1.831652 AAGAAGCCAGACAGGACCGG 61.832 60.000 0.00 0.00 41.22 5.28
200 201 3.959991 GAAGCCAGACAGGACCGGC 62.960 68.421 0.00 0.00 45.23 6.13
203 204 4.436998 CCAGACAGGACCGGCGAC 62.437 72.222 9.30 1.30 41.22 5.19
216 217 4.415332 GCGACGACCTCTTGCGGA 62.415 66.667 0.00 0.00 0.00 5.54
217 218 2.202492 CGACGACCTCTTGCGGAG 60.202 66.667 0.00 0.20 41.51 4.63
224 225 4.148825 CTCTTGCGGAGGTCGGGG 62.149 72.222 0.00 0.00 38.35 5.73
226 227 4.452733 CTTGCGGAGGTCGGGGTC 62.453 72.222 0.00 0.00 39.69 4.46
230 231 3.141488 CGGAGGTCGGGGTCAGAG 61.141 72.222 0.00 0.00 34.75 3.35
231 232 3.462678 GGAGGTCGGGGTCAGAGC 61.463 72.222 0.00 0.00 36.46 4.09
232 233 2.680352 GAGGTCGGGGTCAGAGCA 60.680 66.667 1.20 0.00 38.46 4.26
233 234 2.681778 AGGTCGGGGTCAGAGCAG 60.682 66.667 1.20 0.00 38.46 4.24
234 235 2.680352 GGTCGGGGTCAGAGCAGA 60.680 66.667 1.20 0.00 36.27 4.26
235 236 2.716017 GGTCGGGGTCAGAGCAGAG 61.716 68.421 1.20 0.00 36.27 3.35
236 237 2.363018 TCGGGGTCAGAGCAGAGG 60.363 66.667 1.20 0.00 0.00 3.69
237 238 3.465403 CGGGGTCAGAGCAGAGGG 61.465 72.222 1.20 0.00 0.00 4.30
238 239 2.284995 GGGGTCAGAGCAGAGGGT 60.285 66.667 1.20 0.00 0.00 4.34
239 240 2.664081 GGGGTCAGAGCAGAGGGTG 61.664 68.421 1.20 0.00 0.00 4.61
240 241 1.610673 GGGTCAGAGCAGAGGGTGA 60.611 63.158 1.20 0.00 0.00 4.02
241 242 1.612395 GGGTCAGAGCAGAGGGTGAG 61.612 65.000 1.20 0.00 0.00 3.51
242 243 1.217779 GTCAGAGCAGAGGGTGAGC 59.782 63.158 0.00 0.00 0.00 4.26
243 244 1.986757 TCAGAGCAGAGGGTGAGCC 60.987 63.158 0.00 0.00 0.00 4.70
244 245 2.121385 AGAGCAGAGGGTGAGCCA 59.879 61.111 2.50 0.00 36.17 4.75
245 246 2.267324 GAGCAGAGGGTGAGCCAC 59.733 66.667 2.50 0.00 36.17 5.01
246 247 3.655810 GAGCAGAGGGTGAGCCACG 62.656 68.421 2.50 0.00 34.83 4.94
260 261 4.046998 CACGCTCACGACACGCAC 62.047 66.667 0.00 0.00 43.93 5.34
261 262 4.266070 ACGCTCACGACACGCACT 62.266 61.111 0.00 0.00 43.93 4.40
262 263 3.030308 CGCTCACGACACGCACTT 61.030 61.111 0.00 0.00 43.93 3.16
263 264 2.546321 GCTCACGACACGCACTTG 59.454 61.111 0.00 0.00 0.00 3.16
264 265 1.949133 GCTCACGACACGCACTTGA 60.949 57.895 0.00 0.00 0.00 3.02
265 266 1.487452 GCTCACGACACGCACTTGAA 61.487 55.000 0.00 0.00 0.00 2.69
266 267 0.504384 CTCACGACACGCACTTGAAG 59.496 55.000 0.00 0.00 0.00 3.02
267 268 1.083401 CACGACACGCACTTGAAGC 60.083 57.895 0.00 0.00 0.00 3.86
275 276 3.736581 GCACTTGAAGCGACAGAAC 57.263 52.632 0.00 0.00 0.00 3.01
276 277 0.111089 GCACTTGAAGCGACAGAACG 60.111 55.000 0.00 0.00 0.00 3.95
277 278 1.487482 CACTTGAAGCGACAGAACGA 58.513 50.000 0.00 0.00 35.09 3.85
278 279 2.061773 CACTTGAAGCGACAGAACGAT 58.938 47.619 0.00 0.00 35.09 3.73
279 280 2.091277 CACTTGAAGCGACAGAACGATC 59.909 50.000 0.00 0.00 35.09 3.69
280 281 2.029828 ACTTGAAGCGACAGAACGATCT 60.030 45.455 0.00 0.00 35.88 2.75
291 292 2.664015 AGAACGATCTGTAGGGTACCC 58.336 52.381 24.65 24.65 42.57 3.69
292 293 2.024655 AGAACGATCTGTAGGGTACCCA 60.025 50.000 32.70 15.87 42.57 4.51
293 294 4.190595 AGAACGATCTGTAGGGTACCCAC 61.191 52.174 32.70 25.64 42.57 4.61
302 303 4.091939 GGTACCCACGCCAGGACC 62.092 72.222 0.00 0.00 0.00 4.46
303 304 3.001406 GTACCCACGCCAGGACCT 61.001 66.667 0.00 0.00 0.00 3.85
304 305 2.682494 TACCCACGCCAGGACCTC 60.682 66.667 0.00 0.00 0.00 3.85
307 308 3.402681 CCACGCCAGGACCTCCAT 61.403 66.667 0.00 0.00 38.89 3.41
308 309 2.124983 CACGCCAGGACCTCCATG 60.125 66.667 0.00 0.00 38.89 3.66
309 310 2.284625 ACGCCAGGACCTCCATGA 60.285 61.111 0.00 0.00 38.89 3.07
310 311 2.187946 CGCCAGGACCTCCATGAC 59.812 66.667 0.00 0.00 38.89 3.06
311 312 2.187946 GCCAGGACCTCCATGACG 59.812 66.667 0.00 0.00 38.89 4.35
312 313 2.359169 GCCAGGACCTCCATGACGA 61.359 63.158 0.00 0.00 38.89 4.20
313 314 1.690219 GCCAGGACCTCCATGACGAT 61.690 60.000 0.00 0.00 38.89 3.73
314 315 0.105593 CCAGGACCTCCATGACGATG 59.894 60.000 0.00 0.00 38.89 3.84
315 316 0.826715 CAGGACCTCCATGACGATGT 59.173 55.000 0.00 0.00 38.89 3.06
316 317 1.115467 AGGACCTCCATGACGATGTC 58.885 55.000 0.00 0.00 38.89 3.06
317 318 1.115467 GGACCTCCATGACGATGTCT 58.885 55.000 0.00 0.00 35.64 3.41
318 319 1.482593 GGACCTCCATGACGATGTCTT 59.517 52.381 0.00 0.00 35.64 3.01
319 320 2.482142 GGACCTCCATGACGATGTCTTC 60.482 54.545 0.00 0.00 35.64 2.87
320 321 5.877572 GGACCTCCATGACGATGTCTTCG 62.878 56.522 6.59 6.59 44.08 3.79
327 328 3.617368 CGATGTCTTCGGGGAGGT 58.383 61.111 0.28 0.00 44.28 3.85
328 329 1.898154 CGATGTCTTCGGGGAGGTT 59.102 57.895 0.28 0.00 44.28 3.50
329 330 0.179108 CGATGTCTTCGGGGAGGTTC 60.179 60.000 0.28 0.00 44.28 3.62
330 331 0.179108 GATGTCTTCGGGGAGGTTCG 60.179 60.000 0.00 0.00 0.00 3.95
331 332 2.125633 GTCTTCGGGGAGGTTCGC 60.126 66.667 0.00 0.00 0.00 4.70
332 333 3.387947 TCTTCGGGGAGGTTCGCC 61.388 66.667 2.32 2.32 45.09 5.54
353 354 4.893601 GGCGGCGGCTACTCCTTC 62.894 72.222 27.22 0.00 39.81 3.46
354 355 3.839432 GCGGCGGCTACTCCTTCT 61.839 66.667 9.78 0.00 35.83 2.85
355 356 2.893398 CGGCGGCTACTCCTTCTT 59.107 61.111 7.61 0.00 0.00 2.52
356 357 1.227002 CGGCGGCTACTCCTTCTTC 60.227 63.158 7.61 0.00 0.00 2.87
357 358 1.144276 GGCGGCTACTCCTTCTTCC 59.856 63.158 0.00 0.00 0.00 3.46
358 359 1.331399 GGCGGCTACTCCTTCTTCCT 61.331 60.000 0.00 0.00 0.00 3.36
359 360 0.179097 GCGGCTACTCCTTCTTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
360 361 0.461961 CGGCTACTCCTTCTTCCTGG 59.538 60.000 0.00 0.00 0.00 4.45
361 362 1.867363 GGCTACTCCTTCTTCCTGGA 58.133 55.000 0.00 0.00 0.00 3.86
362 363 1.483004 GGCTACTCCTTCTTCCTGGAC 59.517 57.143 0.00 0.00 0.00 4.02
363 364 2.180276 GCTACTCCTTCTTCCTGGACA 58.820 52.381 0.00 0.00 0.00 4.02
364 365 2.769095 GCTACTCCTTCTTCCTGGACAT 59.231 50.000 0.00 0.00 0.00 3.06
365 366 3.181470 GCTACTCCTTCTTCCTGGACATC 60.181 52.174 0.00 0.00 0.00 3.06
366 367 3.197927 ACTCCTTCTTCCTGGACATCT 57.802 47.619 0.00 0.00 0.00 2.90
367 368 3.525862 ACTCCTTCTTCCTGGACATCTT 58.474 45.455 0.00 0.00 0.00 2.40
368 369 3.913163 ACTCCTTCTTCCTGGACATCTTT 59.087 43.478 0.00 0.00 0.00 2.52
369 370 4.019771 ACTCCTTCTTCCTGGACATCTTTC 60.020 45.833 0.00 0.00 0.00 2.62
370 371 3.264450 TCCTTCTTCCTGGACATCTTTCC 59.736 47.826 0.00 0.00 36.03 3.13
371 372 3.615155 CTTCTTCCTGGACATCTTTCCC 58.385 50.000 0.00 0.00 34.33 3.97
372 373 2.631384 TCTTCCTGGACATCTTTCCCA 58.369 47.619 0.00 0.00 34.33 4.37
373 374 3.192944 TCTTCCTGGACATCTTTCCCAT 58.807 45.455 0.00 0.00 34.33 4.00
374 375 3.200825 TCTTCCTGGACATCTTTCCCATC 59.799 47.826 0.00 0.00 34.33 3.51
375 376 1.846439 TCCTGGACATCTTTCCCATCC 59.154 52.381 0.00 0.00 34.33 3.51
376 377 1.133668 CCTGGACATCTTTCCCATCCC 60.134 57.143 0.00 0.00 34.33 3.85
377 378 0.546122 TGGACATCTTTCCCATCCCG 59.454 55.000 0.00 0.00 34.33 5.14
378 379 0.179018 GGACATCTTTCCCATCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
379 380 0.837272 GACATCTTTCCCATCCCGGA 59.163 55.000 0.73 0.00 36.56 5.14
380 381 0.546598 ACATCTTTCCCATCCCGGAC 59.453 55.000 0.73 0.00 36.56 4.79
381 382 0.532862 CATCTTTCCCATCCCGGACG 60.533 60.000 0.73 0.00 36.56 4.79
382 383 0.689745 ATCTTTCCCATCCCGGACGA 60.690 55.000 0.73 0.00 36.56 4.20
383 384 1.153429 CTTTCCCATCCCGGACGAC 60.153 63.158 0.73 0.00 36.56 4.34
384 385 2.901051 CTTTCCCATCCCGGACGACG 62.901 65.000 0.73 0.00 43.80 5.12
410 411 3.064324 GGATGCAGCAAGGCGGTT 61.064 61.111 3.51 0.00 36.28 4.44
411 412 2.639327 GGATGCAGCAAGGCGGTTT 61.639 57.895 3.51 0.00 36.28 3.27
412 413 1.444895 GATGCAGCAAGGCGGTTTG 60.445 57.895 0.00 0.00 36.28 2.93
413 414 2.146073 GATGCAGCAAGGCGGTTTGT 62.146 55.000 0.00 0.00 36.28 2.83
414 415 0.893270 ATGCAGCAAGGCGGTTTGTA 60.893 50.000 0.00 0.00 36.28 2.41
415 416 1.210155 GCAGCAAGGCGGTTTGTAG 59.790 57.895 0.00 0.00 0.00 2.74
416 417 1.210155 CAGCAAGGCGGTTTGTAGC 59.790 57.895 0.00 0.00 0.00 3.58
418 419 2.867472 CAAGGCGGTTTGTAGCGG 59.133 61.111 0.00 0.00 44.99 5.52
419 420 2.359478 AAGGCGGTTTGTAGCGGG 60.359 61.111 0.00 0.00 44.99 6.13
422 423 3.053896 GCGGTTTGTAGCGGGCTT 61.054 61.111 0.00 0.00 44.99 4.35
423 424 3.035576 GCGGTTTGTAGCGGGCTTC 62.036 63.158 0.00 0.00 44.99 3.86
424 425 2.396157 CGGTTTGTAGCGGGCTTCC 61.396 63.158 0.00 0.00 41.36 3.46
425 426 2.044555 GGTTTGTAGCGGGCTTCCC 61.045 63.158 0.00 0.00 41.09 3.97
441 442 2.670251 CCCGCCGCAACCTGTTTA 60.670 61.111 0.00 0.00 0.00 2.01
442 443 2.043980 CCCGCCGCAACCTGTTTAT 61.044 57.895 0.00 0.00 0.00 1.40
443 444 1.591504 CCCGCCGCAACCTGTTTATT 61.592 55.000 0.00 0.00 0.00 1.40
444 445 0.455972 CCGCCGCAACCTGTTTATTG 60.456 55.000 0.00 0.00 0.00 1.90
445 446 1.070471 CGCCGCAACCTGTTTATTGC 61.070 55.000 0.00 0.00 46.24 3.56
446 447 0.735978 GCCGCAACCTGTTTATTGCC 60.736 55.000 3.55 0.00 46.87 4.52
447 448 0.108851 CCGCAACCTGTTTATTGCCC 60.109 55.000 3.55 0.00 46.87 5.36
448 449 0.108851 CGCAACCTGTTTATTGCCCC 60.109 55.000 3.55 0.00 46.87 5.80
449 450 0.972883 GCAACCTGTTTATTGCCCCA 59.027 50.000 0.00 0.00 44.42 4.96
450 451 1.337728 GCAACCTGTTTATTGCCCCAC 60.338 52.381 0.00 0.00 44.42 4.61
451 452 1.275010 CAACCTGTTTATTGCCCCACC 59.725 52.381 0.00 0.00 0.00 4.61
452 453 0.783850 ACCTGTTTATTGCCCCACCT 59.216 50.000 0.00 0.00 0.00 4.00
453 454 1.997040 ACCTGTTTATTGCCCCACCTA 59.003 47.619 0.00 0.00 0.00 3.08
454 455 2.025321 ACCTGTTTATTGCCCCACCTAG 60.025 50.000 0.00 0.00 0.00 3.02
455 456 2.025321 CCTGTTTATTGCCCCACCTAGT 60.025 50.000 0.00 0.00 0.00 2.57
456 457 3.563479 CCTGTTTATTGCCCCACCTAGTT 60.563 47.826 0.00 0.00 0.00 2.24
457 458 4.086457 CTGTTTATTGCCCCACCTAGTTT 58.914 43.478 0.00 0.00 0.00 2.66
458 459 3.829601 TGTTTATTGCCCCACCTAGTTTG 59.170 43.478 0.00 0.00 0.00 2.93
459 460 2.818751 TATTGCCCCACCTAGTTTGG 57.181 50.000 1.26 1.26 0.00 3.28
465 466 2.387952 CCACCTAGTTTGGGCCTCT 58.612 57.895 4.53 3.32 0.00 3.69
466 467 0.035056 CCACCTAGTTTGGGCCTCTG 60.035 60.000 4.53 0.00 0.00 3.35
467 468 0.035056 CACCTAGTTTGGGCCTCTGG 60.035 60.000 4.53 2.79 0.00 3.86
468 469 1.208165 ACCTAGTTTGGGCCTCTGGG 61.208 60.000 18.57 18.57 36.21 4.45
479 480 3.987594 CCTCTGGGCTTTTAGGCTT 57.012 52.632 0.00 0.00 41.09 4.35
480 481 2.222227 CCTCTGGGCTTTTAGGCTTT 57.778 50.000 0.00 0.00 41.09 3.51
481 482 1.821136 CCTCTGGGCTTTTAGGCTTTG 59.179 52.381 0.00 0.00 41.09 2.77
482 483 2.555227 CCTCTGGGCTTTTAGGCTTTGA 60.555 50.000 0.00 0.00 41.09 2.69
483 484 3.157087 CTCTGGGCTTTTAGGCTTTGAA 58.843 45.455 0.00 0.00 41.09 2.69
484 485 3.157087 TCTGGGCTTTTAGGCTTTGAAG 58.843 45.455 0.00 0.00 41.09 3.02
495 496 2.094762 GCTTTGAAGCCTAGAACGGA 57.905 50.000 4.38 0.00 46.20 4.69
496 497 2.423577 GCTTTGAAGCCTAGAACGGAA 58.576 47.619 4.38 0.00 46.20 4.30
497 498 3.010420 GCTTTGAAGCCTAGAACGGAAT 58.990 45.455 4.38 0.00 46.20 3.01
498 499 3.440522 GCTTTGAAGCCTAGAACGGAATT 59.559 43.478 4.38 0.00 46.20 2.17
499 500 4.437524 GCTTTGAAGCCTAGAACGGAATTC 60.438 45.833 4.38 0.00 46.20 2.17
500 501 3.973206 TGAAGCCTAGAACGGAATTCA 57.027 42.857 7.93 0.00 40.09 2.57
501 502 4.487714 TGAAGCCTAGAACGGAATTCAT 57.512 40.909 7.93 0.00 40.09 2.57
509 510 6.038271 GCCTAGAACGGAATTCATAACAATGT 59.962 38.462 7.93 0.00 40.09 2.71
523 524 1.490069 ACAATGTGGGCTTTTGGCTTT 59.510 42.857 0.00 0.00 45.25 3.51
554 555 6.828273 TGTATTGTGGGATTCCTATGTTCAAG 59.172 38.462 2.01 0.00 0.00 3.02
588 589 5.854866 GGCTTTAAAGTTTTACTAGGTTGCG 59.145 40.000 16.38 0.00 0.00 4.85
844 3132 0.171903 GCAAGATGTCACCCATGCAC 59.828 55.000 0.00 0.00 32.56 4.57
867 3155 7.253883 GCACAATTTAAGCATGAAGATAAGTGC 60.254 37.037 0.00 3.67 38.34 4.40
1016 3308 5.777223 TGATTGATATGGCTAGTGCTAGAGT 59.223 40.000 10.17 0.00 39.59 3.24
1035 3327 2.108250 AGTGGTTGCCATGTTCTACCTT 59.892 45.455 13.73 3.90 35.28 3.50
1043 3335 5.001232 TGCCATGTTCTACCTTGTAGTTTC 58.999 41.667 1.54 0.00 0.00 2.78
1058 3350 5.279384 TGTAGTTTCTGTGACGTTCTCTTC 58.721 41.667 0.00 0.00 0.00 2.87
1095 3387 0.460459 GGGCAAGTAAGTCTCGAGCC 60.460 60.000 7.81 2.38 37.60 4.70
1098 3390 0.171455 CAAGTAAGTCTCGAGCCGCT 59.829 55.000 7.81 2.78 0.00 5.52
1111 3403 2.154007 CGAGCCGCTATCGAAAAAGATC 59.846 50.000 0.00 0.00 42.76 2.75
1314 3606 1.442520 CAACGCGTTGCATGAAGGG 60.443 57.895 35.89 12.20 33.45 3.95
1355 3647 8.716619 TTGTTTTGCTGTTGATATTAACGTAC 57.283 30.769 5.95 0.00 33.28 3.67
1533 3834 1.475034 GCAAGGCCGATCTGGTTGATA 60.475 52.381 0.00 0.00 41.21 2.15
1631 3933 8.856490 ATGCAACTAATAAAATCGAACCATTC 57.144 30.769 0.00 0.00 0.00 2.67
1775 4390 3.818210 TGAGGTTTGTACATTTGTCGCAT 59.182 39.130 0.00 0.00 0.00 4.73
1819 4440 1.135315 CCATGTCTTTGCGTGGAATGG 60.135 52.381 0.00 0.00 45.87 3.16
1855 4476 8.304596 GTCATACGATATGGAAAACCAGAGATA 58.695 37.037 0.00 0.00 0.00 1.98
1945 4567 2.064434 TGGTTGTCAGATGGTTTGCA 57.936 45.000 0.00 0.00 0.00 4.08
1979 4601 0.733150 GATTGCCTACCGAGTTTGCC 59.267 55.000 0.00 0.00 0.00 4.52
1980 4602 0.037590 ATTGCCTACCGAGTTTGCCA 59.962 50.000 0.00 0.00 0.00 4.92
2399 5021 2.622470 TGCAGCAATGCAAGTTGAGTAA 59.378 40.909 8.35 0.00 42.40 2.24
2406 5028 3.287312 TGCAAGTTGAGTAATGCAAGC 57.713 42.857 7.16 0.00 45.04 4.01
2419 5041 4.494350 AATGCAAGCTGTGAAGTAACTG 57.506 40.909 0.00 0.00 0.00 3.16
2493 5115 7.328277 TGTGCACATTTAAGACTACAAGTTT 57.672 32.000 17.42 0.00 0.00 2.66
2494 5116 7.767261 TGTGCACATTTAAGACTACAAGTTTT 58.233 30.769 17.42 0.00 0.00 2.43
2496 5118 7.378728 GTGCACATTTAAGACTACAAGTTTTCC 59.621 37.037 13.17 0.00 0.00 3.13
2497 5119 7.067615 TGCACATTTAAGACTACAAGTTTTCCA 59.932 33.333 0.00 0.00 0.00 3.53
2498 5120 7.591426 GCACATTTAAGACTACAAGTTTTCCAG 59.409 37.037 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.743933 GGAAACTTTCCGCTTTTCCAAAGAAAA 61.744 37.037 4.75 1.44 45.24 2.29
13 14 4.729227 ACTTTCCGCTTTTCCAAAGAAA 57.271 36.364 0.25 0.00 40.26 2.52
14 15 4.729227 AACTTTCCGCTTTTCCAAAGAA 57.271 36.364 0.25 0.00 31.49 2.52
15 16 4.440940 GGAAACTTTCCGCTTTTCCAAAGA 60.441 41.667 4.75 0.00 45.24 2.52
16 17 3.802139 GGAAACTTTCCGCTTTTCCAAAG 59.198 43.478 4.75 0.00 45.24 2.77
17 18 3.787785 GGAAACTTTCCGCTTTTCCAAA 58.212 40.909 4.75 0.00 45.24 3.28
18 19 3.446310 GGAAACTTTCCGCTTTTCCAA 57.554 42.857 4.75 0.00 45.24 3.53
29 30 6.159293 GGATGAAAATGGAGTGGAAACTTTC 58.841 40.000 0.00 0.00 0.00 2.62
30 31 5.012046 GGGATGAAAATGGAGTGGAAACTTT 59.988 40.000 0.00 0.00 0.00 2.66
31 32 4.528206 GGGATGAAAATGGAGTGGAAACTT 59.472 41.667 0.00 0.00 0.00 2.66
32 33 4.089361 GGGATGAAAATGGAGTGGAAACT 58.911 43.478 0.00 0.00 0.00 2.66
33 34 4.089361 AGGGATGAAAATGGAGTGGAAAC 58.911 43.478 0.00 0.00 0.00 2.78
34 35 4.402616 AGGGATGAAAATGGAGTGGAAA 57.597 40.909 0.00 0.00 0.00 3.13
35 36 5.015178 AGTTAGGGATGAAAATGGAGTGGAA 59.985 40.000 0.00 0.00 0.00 3.53
36 37 4.540099 AGTTAGGGATGAAAATGGAGTGGA 59.460 41.667 0.00 0.00 0.00 4.02
37 38 4.860022 AGTTAGGGATGAAAATGGAGTGG 58.140 43.478 0.00 0.00 0.00 4.00
38 39 5.126061 CCAAGTTAGGGATGAAAATGGAGTG 59.874 44.000 0.00 0.00 0.00 3.51
39 40 5.015178 TCCAAGTTAGGGATGAAAATGGAGT 59.985 40.000 0.00 0.00 31.26 3.85
40 41 5.358160 GTCCAAGTTAGGGATGAAAATGGAG 59.642 44.000 0.00 0.00 36.67 3.86
41 42 5.261216 GTCCAAGTTAGGGATGAAAATGGA 58.739 41.667 0.00 0.00 36.67 3.41
42 43 4.096382 CGTCCAAGTTAGGGATGAAAATGG 59.904 45.833 0.00 0.00 42.86 3.16
43 44 4.700213 ACGTCCAAGTTAGGGATGAAAATG 59.300 41.667 7.60 0.00 42.86 2.32
44 45 4.918588 ACGTCCAAGTTAGGGATGAAAAT 58.081 39.130 7.60 0.00 42.86 1.82
45 46 4.202377 TGACGTCCAAGTTAGGGATGAAAA 60.202 41.667 14.12 0.00 42.86 2.29
46 47 3.325425 TGACGTCCAAGTTAGGGATGAAA 59.675 43.478 14.12 0.00 42.86 2.69
47 48 2.901192 TGACGTCCAAGTTAGGGATGAA 59.099 45.455 14.12 0.00 42.86 2.57
48 49 2.232941 GTGACGTCCAAGTTAGGGATGA 59.767 50.000 14.12 0.00 42.86 2.92
49 50 2.618053 GTGACGTCCAAGTTAGGGATG 58.382 52.381 14.12 0.00 45.16 3.51
50 51 1.553704 GGTGACGTCCAAGTTAGGGAT 59.446 52.381 14.12 0.00 36.67 3.85
51 52 0.971386 GGTGACGTCCAAGTTAGGGA 59.029 55.000 14.12 0.00 0.00 4.20
52 53 0.682852 TGGTGACGTCCAAGTTAGGG 59.317 55.000 14.12 0.00 34.24 3.53
53 54 2.618053 GATGGTGACGTCCAAGTTAGG 58.382 52.381 14.12 0.00 41.09 2.69
54 55 2.259618 CGATGGTGACGTCCAAGTTAG 58.740 52.381 14.12 0.00 43.77 2.34
55 56 1.670674 GCGATGGTGACGTCCAAGTTA 60.671 52.381 14.12 0.00 43.77 2.24
56 57 0.949105 GCGATGGTGACGTCCAAGTT 60.949 55.000 14.12 0.00 43.77 2.66
57 58 1.374252 GCGATGGTGACGTCCAAGT 60.374 57.895 14.12 0.00 43.77 3.16
58 59 0.740868 ATGCGATGGTGACGTCCAAG 60.741 55.000 14.12 5.52 43.77 3.61
59 60 0.533032 TATGCGATGGTGACGTCCAA 59.467 50.000 14.12 0.00 43.77 3.53
60 61 0.179121 GTATGCGATGGTGACGTCCA 60.179 55.000 14.12 5.66 43.77 4.02
61 62 1.206745 CGTATGCGATGGTGACGTCC 61.207 60.000 14.12 4.20 43.77 4.79
62 63 0.524816 ACGTATGCGATGGTGACGTC 60.525 55.000 11.07 9.11 42.70 4.34
63 64 0.800683 CACGTATGCGATGGTGACGT 60.801 55.000 11.07 0.00 46.86 4.34
64 65 1.479420 CCACGTATGCGATGGTGACG 61.479 60.000 11.07 0.00 42.00 4.35
65 66 0.459585 ACCACGTATGCGATGGTGAC 60.460 55.000 22.28 0.00 44.48 3.67
66 67 1.894512 ACCACGTATGCGATGGTGA 59.105 52.632 22.28 0.00 44.48 4.02
67 68 4.513519 ACCACGTATGCGATGGTG 57.486 55.556 22.28 7.02 44.48 4.17
68 69 1.813753 GCACCACGTATGCGATGGT 60.814 57.895 19.12 19.12 45.86 3.55
69 70 1.765161 CTGCACCACGTATGCGATGG 61.765 60.000 11.07 15.60 46.49 3.51
70 71 1.637934 CTGCACCACGTATGCGATG 59.362 57.895 11.07 6.36 46.49 3.84
71 72 1.521457 CCTGCACCACGTATGCGAT 60.521 57.895 11.07 0.00 46.49 4.58
72 73 2.125713 CCTGCACCACGTATGCGA 60.126 61.111 11.07 7.42 46.49 5.10
73 74 1.295357 TTTCCTGCACCACGTATGCG 61.295 55.000 16.59 0.19 46.49 4.73
74 75 1.094785 ATTTCCTGCACCACGTATGC 58.905 50.000 15.28 15.28 43.68 3.14
75 76 1.401552 CCATTTCCTGCACCACGTATG 59.598 52.381 0.00 0.00 0.00 2.39
76 77 1.280710 TCCATTTCCTGCACCACGTAT 59.719 47.619 0.00 0.00 0.00 3.06
77 78 0.687920 TCCATTTCCTGCACCACGTA 59.312 50.000 0.00 0.00 0.00 3.57
78 79 0.606401 CTCCATTTCCTGCACCACGT 60.606 55.000 0.00 0.00 0.00 4.49
79 80 1.308069 CCTCCATTTCCTGCACCACG 61.308 60.000 0.00 0.00 0.00 4.94
80 81 0.251341 ACCTCCATTTCCTGCACCAC 60.251 55.000 0.00 0.00 0.00 4.16
81 82 0.038166 GACCTCCATTTCCTGCACCA 59.962 55.000 0.00 0.00 0.00 4.17
82 83 0.681243 GGACCTCCATTTCCTGCACC 60.681 60.000 0.00 0.00 35.64 5.01
83 84 1.026718 CGGACCTCCATTTCCTGCAC 61.027 60.000 0.00 0.00 35.14 4.57
84 85 1.299648 CGGACCTCCATTTCCTGCA 59.700 57.895 0.00 0.00 35.14 4.41
85 86 1.452108 CCGGACCTCCATTTCCTGC 60.452 63.158 0.00 0.00 35.14 4.85
86 87 1.224592 CCCGGACCTCCATTTCCTG 59.775 63.158 0.73 0.00 35.14 3.86
87 88 1.229853 ACCCGGACCTCCATTTCCT 60.230 57.895 0.73 0.00 35.14 3.36
88 89 1.223763 GACCCGGACCTCCATTTCC 59.776 63.158 0.73 0.00 35.14 3.13
89 90 1.153429 CGACCCGGACCTCCATTTC 60.153 63.158 0.73 0.00 35.14 2.17
90 91 1.611261 TCGACCCGGACCTCCATTT 60.611 57.895 0.73 0.00 35.14 2.32
91 92 2.038329 TCGACCCGGACCTCCATT 59.962 61.111 0.73 0.00 35.14 3.16
92 93 2.758737 GTCGACCCGGACCTCCAT 60.759 66.667 0.73 0.00 35.14 3.41
95 96 3.507009 CTCGTCGACCCGGACCTC 61.507 72.222 10.58 0.00 33.30 3.85
114 115 1.931007 ATTTGAGGGAGAGGCCAGCC 61.931 60.000 5.01 0.00 38.95 4.85
115 116 0.750911 CATTTGAGGGAGAGGCCAGC 60.751 60.000 5.01 0.00 38.95 4.85
116 117 0.622665 ACATTTGAGGGAGAGGCCAG 59.377 55.000 5.01 0.00 38.95 4.85
117 118 1.075601 AACATTTGAGGGAGAGGCCA 58.924 50.000 5.01 0.00 38.95 5.36
118 119 3.282885 CTTAACATTTGAGGGAGAGGCC 58.717 50.000 0.00 0.00 0.00 5.19
119 120 3.054361 TCCTTAACATTTGAGGGAGAGGC 60.054 47.826 0.00 0.00 0.00 4.70
120 121 4.844349 TCCTTAACATTTGAGGGAGAGG 57.156 45.455 0.00 0.00 0.00 3.69
121 122 5.810095 ACTTCCTTAACATTTGAGGGAGAG 58.190 41.667 11.15 4.03 38.27 3.20
122 123 5.309543 TGACTTCCTTAACATTTGAGGGAGA 59.690 40.000 11.15 0.00 38.27 3.71
123 124 5.560724 TGACTTCCTTAACATTTGAGGGAG 58.439 41.667 3.92 3.92 41.23 4.30
124 125 5.576563 TGACTTCCTTAACATTTGAGGGA 57.423 39.130 0.00 0.00 0.00 4.20
125 126 5.335976 GCTTGACTTCCTTAACATTTGAGGG 60.336 44.000 0.00 0.00 0.00 4.30
126 127 5.474876 AGCTTGACTTCCTTAACATTTGAGG 59.525 40.000 0.00 0.00 0.00 3.86
127 128 6.566197 AGCTTGACTTCCTTAACATTTGAG 57.434 37.500 0.00 0.00 0.00 3.02
128 129 5.179368 CGAGCTTGACTTCCTTAACATTTGA 59.821 40.000 0.00 0.00 0.00 2.69
129 130 5.385617 CGAGCTTGACTTCCTTAACATTTG 58.614 41.667 0.00 0.00 0.00 2.32
130 131 4.083271 GCGAGCTTGACTTCCTTAACATTT 60.083 41.667 4.70 0.00 0.00 2.32
131 132 3.437049 GCGAGCTTGACTTCCTTAACATT 59.563 43.478 4.70 0.00 0.00 2.71
132 133 3.003480 GCGAGCTTGACTTCCTTAACAT 58.997 45.455 4.70 0.00 0.00 2.71
133 134 2.413837 GCGAGCTTGACTTCCTTAACA 58.586 47.619 4.70 0.00 0.00 2.41
134 135 1.390463 CGCGAGCTTGACTTCCTTAAC 59.610 52.381 4.70 0.00 0.00 2.01
135 136 1.671850 CCGCGAGCTTGACTTCCTTAA 60.672 52.381 8.23 0.00 0.00 1.85
136 137 0.108804 CCGCGAGCTTGACTTCCTTA 60.109 55.000 8.23 0.00 0.00 2.69
137 138 1.374758 CCGCGAGCTTGACTTCCTT 60.375 57.895 8.23 0.00 0.00 3.36
138 139 2.100879 AACCGCGAGCTTGACTTCCT 62.101 55.000 8.23 0.00 0.00 3.36
139 140 1.627550 GAACCGCGAGCTTGACTTCC 61.628 60.000 8.23 0.00 0.00 3.46
140 141 0.667792 AGAACCGCGAGCTTGACTTC 60.668 55.000 8.23 1.57 0.00 3.01
141 142 0.249911 AAGAACCGCGAGCTTGACTT 60.250 50.000 8.23 0.18 0.00 3.01
142 143 0.946221 CAAGAACCGCGAGCTTGACT 60.946 55.000 22.42 5.29 41.03 3.41
143 144 1.222115 ACAAGAACCGCGAGCTTGAC 61.222 55.000 28.99 8.33 41.03 3.18
144 145 0.944311 GACAAGAACCGCGAGCTTGA 60.944 55.000 28.99 0.00 41.03 3.02
145 146 1.493311 GACAAGAACCGCGAGCTTG 59.507 57.895 24.02 24.02 43.41 4.01
146 147 2.022129 CGACAAGAACCGCGAGCTT 61.022 57.895 8.23 4.82 0.00 3.74
147 148 2.430921 CGACAAGAACCGCGAGCT 60.431 61.111 8.23 0.00 0.00 4.09
148 149 2.717809 GACGACAAGAACCGCGAGC 61.718 63.158 8.23 0.00 0.00 5.03
149 150 2.426183 CGACGACAAGAACCGCGAG 61.426 63.158 8.23 0.00 0.00 5.03
150 151 2.427905 CGACGACAAGAACCGCGA 60.428 61.111 8.23 0.00 0.00 5.87
151 152 4.117372 GCGACGACAAGAACCGCG 62.117 66.667 0.00 0.00 36.53 6.46
152 153 4.117372 CGCGACGACAAGAACCGC 62.117 66.667 0.00 0.00 42.11 5.68
153 154 3.467119 CCGCGACGACAAGAACCG 61.467 66.667 8.23 0.00 0.00 4.44
154 155 3.110178 CCCGCGACGACAAGAACC 61.110 66.667 8.23 0.00 0.00 3.62
155 156 3.774702 GCCCGCGACGACAAGAAC 61.775 66.667 8.23 0.00 0.00 3.01
156 157 2.215465 TATGCCCGCGACGACAAGAA 62.215 55.000 8.23 0.00 0.00 2.52
157 158 2.607668 CTATGCCCGCGACGACAAGA 62.608 60.000 8.23 0.00 0.00 3.02
158 159 2.202690 TATGCCCGCGACGACAAG 60.203 61.111 8.23 0.00 0.00 3.16
159 160 2.202690 CTATGCCCGCGACGACAA 60.203 61.111 8.23 0.00 0.00 3.18
160 161 4.865761 GCTATGCCCGCGACGACA 62.866 66.667 8.23 0.00 0.00 4.35
161 162 4.865761 TGCTATGCCCGCGACGAC 62.866 66.667 8.23 0.00 0.00 4.34
162 163 3.650907 TTTGCTATGCCCGCGACGA 62.651 57.895 8.23 0.00 0.00 4.20
163 164 2.631696 CTTTTGCTATGCCCGCGACG 62.632 60.000 8.23 0.00 0.00 5.12
164 165 1.062525 CTTTTGCTATGCCCGCGAC 59.937 57.895 8.23 0.00 0.00 5.19
165 166 0.675208 TTCTTTTGCTATGCCCGCGA 60.675 50.000 8.23 0.00 0.00 5.87
166 167 0.248215 CTTCTTTTGCTATGCCCGCG 60.248 55.000 0.00 0.00 0.00 6.46
167 168 0.526310 GCTTCTTTTGCTATGCCCGC 60.526 55.000 0.00 0.00 0.00 6.13
168 169 0.101219 GGCTTCTTTTGCTATGCCCG 59.899 55.000 0.00 0.00 34.81 6.13
169 170 1.135721 CTGGCTTCTTTTGCTATGCCC 59.864 52.381 0.00 0.00 39.60 5.36
170 171 2.094675 TCTGGCTTCTTTTGCTATGCC 58.905 47.619 0.00 0.00 40.62 4.40
171 172 2.489329 TGTCTGGCTTCTTTTGCTATGC 59.511 45.455 0.00 0.00 0.00 3.14
172 173 3.128242 CCTGTCTGGCTTCTTTTGCTATG 59.872 47.826 0.00 0.00 0.00 2.23
173 174 3.009473 TCCTGTCTGGCTTCTTTTGCTAT 59.991 43.478 0.00 0.00 35.26 2.97
174 175 2.371841 TCCTGTCTGGCTTCTTTTGCTA 59.628 45.455 0.00 0.00 35.26 3.49
175 176 1.143684 TCCTGTCTGGCTTCTTTTGCT 59.856 47.619 0.00 0.00 35.26 3.91
176 177 1.268079 GTCCTGTCTGGCTTCTTTTGC 59.732 52.381 0.00 0.00 35.26 3.68
177 178 1.882623 GGTCCTGTCTGGCTTCTTTTG 59.117 52.381 0.00 0.00 35.26 2.44
178 179 1.543429 CGGTCCTGTCTGGCTTCTTTT 60.543 52.381 0.00 0.00 35.26 2.27
179 180 0.035458 CGGTCCTGTCTGGCTTCTTT 59.965 55.000 0.00 0.00 35.26 2.52
180 181 1.674057 CGGTCCTGTCTGGCTTCTT 59.326 57.895 0.00 0.00 35.26 2.52
181 182 2.286523 CCGGTCCTGTCTGGCTTCT 61.287 63.158 0.00 0.00 35.26 2.85
182 183 2.266055 CCGGTCCTGTCTGGCTTC 59.734 66.667 0.00 0.00 35.26 3.86
186 187 4.436998 GTCGCCGGTCCTGTCTGG 62.437 72.222 1.90 0.00 36.96 3.86
187 188 4.778415 CGTCGCCGGTCCTGTCTG 62.778 72.222 1.90 0.00 0.00 3.51
189 190 4.773117 GTCGTCGCCGGTCCTGTC 62.773 72.222 1.90 0.00 33.95 3.51
194 195 3.745803 AAGAGGTCGTCGCCGGTC 61.746 66.667 1.90 0.00 33.95 4.79
195 196 4.052229 CAAGAGGTCGTCGCCGGT 62.052 66.667 1.90 0.00 33.95 5.28
199 200 4.415332 TCCGCAAGAGGTCGTCGC 62.415 66.667 0.00 0.00 43.02 5.19
200 201 2.202492 CTCCGCAAGAGGTCGTCG 60.202 66.667 0.00 0.00 39.13 5.12
207 208 4.148825 CCCCGACCTCCGCAAGAG 62.149 72.222 0.00 0.00 42.83 2.85
209 210 4.452733 GACCCCGACCTCCGCAAG 62.453 72.222 0.00 0.00 36.84 4.01
213 214 3.141488 CTCTGACCCCGACCTCCG 61.141 72.222 0.00 0.00 38.18 4.63
214 215 3.462678 GCTCTGACCCCGACCTCC 61.463 72.222 0.00 0.00 0.00 4.30
215 216 2.680352 TGCTCTGACCCCGACCTC 60.680 66.667 0.00 0.00 0.00 3.85
216 217 2.681778 CTGCTCTGACCCCGACCT 60.682 66.667 0.00 0.00 0.00 3.85
217 218 2.680352 TCTGCTCTGACCCCGACC 60.680 66.667 0.00 0.00 0.00 4.79
218 219 2.716017 CCTCTGCTCTGACCCCGAC 61.716 68.421 0.00 0.00 0.00 4.79
219 220 2.363018 CCTCTGCTCTGACCCCGA 60.363 66.667 0.00 0.00 0.00 5.14
220 221 3.465403 CCCTCTGCTCTGACCCCG 61.465 72.222 0.00 0.00 0.00 5.73
221 222 2.284995 ACCCTCTGCTCTGACCCC 60.285 66.667 0.00 0.00 0.00 4.95
222 223 1.610673 TCACCCTCTGCTCTGACCC 60.611 63.158 0.00 0.00 0.00 4.46
223 224 1.896694 CTCACCCTCTGCTCTGACC 59.103 63.158 0.00 0.00 0.00 4.02
224 225 1.217779 GCTCACCCTCTGCTCTGAC 59.782 63.158 0.00 0.00 0.00 3.51
225 226 1.986757 GGCTCACCCTCTGCTCTGA 60.987 63.158 0.00 0.00 0.00 3.27
226 227 2.288778 TGGCTCACCCTCTGCTCTG 61.289 63.158 0.00 0.00 33.59 3.35
227 228 2.121385 TGGCTCACCCTCTGCTCT 59.879 61.111 0.00 0.00 33.59 4.09
228 229 2.267324 GTGGCTCACCCTCTGCTC 59.733 66.667 0.00 0.00 33.59 4.26
229 230 3.699894 CGTGGCTCACCCTCTGCT 61.700 66.667 0.50 0.00 33.59 4.24
231 232 3.699894 AGCGTGGCTCACCCTCTG 61.700 66.667 0.50 0.00 30.62 3.35
243 244 4.046998 GTGCGTGTCGTGAGCGTG 62.047 66.667 0.00 0.00 39.49 5.34
244 245 3.768185 AAGTGCGTGTCGTGAGCGT 62.768 57.895 0.00 0.00 39.49 5.07
245 246 3.030308 AAGTGCGTGTCGTGAGCG 61.030 61.111 0.00 0.00 39.92 5.03
246 247 1.487452 TTCAAGTGCGTGTCGTGAGC 61.487 55.000 0.00 0.00 0.00 4.26
247 248 0.504384 CTTCAAGTGCGTGTCGTGAG 59.496 55.000 0.00 0.00 0.00 3.51
248 249 1.487452 GCTTCAAGTGCGTGTCGTGA 61.487 55.000 0.00 0.00 0.00 4.35
249 250 1.083401 GCTTCAAGTGCGTGTCGTG 60.083 57.895 0.00 0.00 0.00 4.35
250 251 3.319904 GCTTCAAGTGCGTGTCGT 58.680 55.556 0.00 0.00 0.00 4.34
257 258 0.111089 CGTTCTGTCGCTTCAAGTGC 60.111 55.000 0.00 0.00 0.00 4.40
258 259 1.487482 TCGTTCTGTCGCTTCAAGTG 58.513 50.000 0.00 0.00 0.00 3.16
259 260 2.029828 AGATCGTTCTGTCGCTTCAAGT 60.030 45.455 0.00 0.00 0.00 3.16
260 261 2.343843 CAGATCGTTCTGTCGCTTCAAG 59.656 50.000 14.19 0.00 43.73 3.02
261 262 2.328473 CAGATCGTTCTGTCGCTTCAA 58.672 47.619 14.19 0.00 43.73 2.69
262 263 1.982612 CAGATCGTTCTGTCGCTTCA 58.017 50.000 14.19 0.00 43.73 3.02
286 287 3.001406 AGGTCCTGGCGTGGGTAC 61.001 66.667 0.00 0.00 0.00 3.34
287 288 2.682494 GAGGTCCTGGCGTGGGTA 60.682 66.667 0.00 0.00 0.00 3.69
290 291 3.402681 ATGGAGGTCCTGGCGTGG 61.403 66.667 0.00 0.00 36.82 4.94
291 292 2.124983 CATGGAGGTCCTGGCGTG 60.125 66.667 0.00 0.00 36.82 5.34
292 293 2.284625 TCATGGAGGTCCTGGCGT 60.285 61.111 0.00 0.00 36.82 5.68
293 294 2.187946 GTCATGGAGGTCCTGGCG 59.812 66.667 0.00 0.00 36.82 5.69
294 295 1.690219 ATCGTCATGGAGGTCCTGGC 61.690 60.000 0.00 0.00 36.82 4.85
295 296 0.105593 CATCGTCATGGAGGTCCTGG 59.894 60.000 0.00 0.00 36.82 4.45
296 297 0.826715 ACATCGTCATGGAGGTCCTG 59.173 55.000 0.00 0.00 36.82 3.86
297 298 1.115467 GACATCGTCATGGAGGTCCT 58.885 55.000 5.71 0.00 40.76 3.85
298 299 1.115467 AGACATCGTCATGGAGGTCC 58.885 55.000 11.54 0.00 46.02 4.46
299 300 2.796383 CGAAGACATCGTCATGGAGGTC 60.796 54.545 8.23 8.23 46.52 3.85
300 301 1.135139 CGAAGACATCGTCATGGAGGT 59.865 52.381 0.00 0.00 46.52 3.85
301 302 1.845266 CGAAGACATCGTCATGGAGG 58.155 55.000 0.00 0.00 46.52 4.30
311 312 0.179108 CGAACCTCCCCGAAGACATC 60.179 60.000 0.00 0.00 0.00 3.06
312 313 1.898154 CGAACCTCCCCGAAGACAT 59.102 57.895 0.00 0.00 0.00 3.06
313 314 2.939261 GCGAACCTCCCCGAAGACA 61.939 63.158 0.00 0.00 0.00 3.41
314 315 2.125633 GCGAACCTCCCCGAAGAC 60.126 66.667 0.00 0.00 0.00 3.01
315 316 3.387947 GGCGAACCTCCCCGAAGA 61.388 66.667 0.00 0.00 0.00 2.87
316 317 4.814294 CGGCGAACCTCCCCGAAG 62.814 72.222 0.00 0.00 44.55 3.79
336 337 4.893601 GAAGGAGTAGCCGCCGCC 62.894 72.222 0.00 0.00 43.43 6.13
337 338 3.372554 AAGAAGGAGTAGCCGCCGC 62.373 63.158 0.00 0.00 43.43 6.53
338 339 1.227002 GAAGAAGGAGTAGCCGCCG 60.227 63.158 0.00 0.00 43.43 6.46
339 340 1.144276 GGAAGAAGGAGTAGCCGCC 59.856 63.158 0.00 0.00 43.43 6.13
340 341 0.179097 CAGGAAGAAGGAGTAGCCGC 60.179 60.000 0.00 0.00 43.43 6.53
341 342 0.461961 CCAGGAAGAAGGAGTAGCCG 59.538 60.000 0.00 0.00 43.43 5.52
342 343 1.483004 GTCCAGGAAGAAGGAGTAGCC 59.517 57.143 0.00 0.00 33.85 3.93
343 344 2.180276 TGTCCAGGAAGAAGGAGTAGC 58.820 52.381 0.00 0.00 33.85 3.58
344 345 4.285863 AGATGTCCAGGAAGAAGGAGTAG 58.714 47.826 0.00 0.00 33.85 2.57
345 346 4.338795 AGATGTCCAGGAAGAAGGAGTA 57.661 45.455 0.00 0.00 33.85 2.59
346 347 3.197927 AGATGTCCAGGAAGAAGGAGT 57.802 47.619 0.00 0.00 33.85 3.85
347 348 4.512484 GAAAGATGTCCAGGAAGAAGGAG 58.488 47.826 0.00 0.00 33.85 3.69
348 349 3.264450 GGAAAGATGTCCAGGAAGAAGGA 59.736 47.826 0.00 0.00 37.65 3.36
349 350 3.615155 GGAAAGATGTCCAGGAAGAAGG 58.385 50.000 0.00 0.00 37.65 3.46
350 351 3.009473 TGGGAAAGATGTCCAGGAAGAAG 59.991 47.826 0.00 0.00 39.70 2.85
351 352 2.986019 TGGGAAAGATGTCCAGGAAGAA 59.014 45.455 0.00 0.00 39.70 2.52
352 353 2.631384 TGGGAAAGATGTCCAGGAAGA 58.369 47.619 0.00 0.00 39.70 2.87
353 354 3.549794 GATGGGAAAGATGTCCAGGAAG 58.450 50.000 0.00 0.00 39.70 3.46
354 355 2.242196 GGATGGGAAAGATGTCCAGGAA 59.758 50.000 0.00 0.00 39.70 3.36
355 356 1.846439 GGATGGGAAAGATGTCCAGGA 59.154 52.381 0.00 0.00 39.70 3.86
356 357 1.133668 GGGATGGGAAAGATGTCCAGG 60.134 57.143 0.00 0.00 39.70 4.45
357 358 1.475751 CGGGATGGGAAAGATGTCCAG 60.476 57.143 0.00 0.00 39.70 3.86
358 359 0.546122 CGGGATGGGAAAGATGTCCA 59.454 55.000 0.00 0.00 39.70 4.02
359 360 0.179018 CCGGGATGGGAAAGATGTCC 60.179 60.000 0.00 0.00 36.90 4.02
360 361 0.837272 TCCGGGATGGGAAAGATGTC 59.163 55.000 0.00 0.00 38.76 3.06
361 362 0.546598 GTCCGGGATGGGAAAGATGT 59.453 55.000 0.00 0.00 37.96 3.06
362 363 0.532862 CGTCCGGGATGGGAAAGATG 60.533 60.000 8.45 0.00 37.96 2.90
363 364 0.689745 TCGTCCGGGATGGGAAAGAT 60.690 55.000 16.03 0.00 37.96 2.40
364 365 1.305465 TCGTCCGGGATGGGAAAGA 60.305 57.895 16.03 0.00 37.96 2.52
365 366 1.153429 GTCGTCCGGGATGGGAAAG 60.153 63.158 16.03 0.00 37.96 2.62
366 367 2.983791 GTCGTCCGGGATGGGAAA 59.016 61.111 16.03 0.00 37.96 3.13
367 368 3.454573 CGTCGTCCGGGATGGGAA 61.455 66.667 16.03 0.00 37.96 3.97
393 394 2.639327 AAACCGCCTTGCTGCATCC 61.639 57.895 1.84 0.00 0.00 3.51
394 395 1.444895 CAAACCGCCTTGCTGCATC 60.445 57.895 1.84 0.00 0.00 3.91
395 396 0.893270 TACAAACCGCCTTGCTGCAT 60.893 50.000 1.84 0.00 0.00 3.96
396 397 1.514678 CTACAAACCGCCTTGCTGCA 61.515 55.000 0.00 0.00 0.00 4.41
397 398 1.210155 CTACAAACCGCCTTGCTGC 59.790 57.895 0.00 0.00 0.00 5.25
398 399 1.210155 GCTACAAACCGCCTTGCTG 59.790 57.895 0.00 0.00 0.00 4.41
399 400 2.325082 CGCTACAAACCGCCTTGCT 61.325 57.895 0.00 0.00 0.00 3.91
400 401 2.175811 CGCTACAAACCGCCTTGC 59.824 61.111 0.00 0.00 0.00 4.01
401 402 2.686816 CCCGCTACAAACCGCCTTG 61.687 63.158 0.00 0.00 0.00 3.61
402 403 2.359478 CCCGCTACAAACCGCCTT 60.359 61.111 0.00 0.00 0.00 4.35
405 406 3.035576 GAAGCCCGCTACAAACCGC 62.036 63.158 0.00 0.00 0.00 5.68
406 407 2.396157 GGAAGCCCGCTACAAACCG 61.396 63.158 0.00 0.00 0.00 4.44
407 408 2.044555 GGGAAGCCCGCTACAAACC 61.045 63.158 0.00 0.00 32.13 3.27
408 409 2.044555 GGGGAAGCCCGCTACAAAC 61.045 63.158 0.00 0.00 46.66 2.93
409 410 2.353573 GGGGAAGCCCGCTACAAA 59.646 61.111 0.00 0.00 46.66 2.83
410 411 4.090588 CGGGGAAGCCCGCTACAA 62.091 66.667 0.00 0.00 46.66 2.41
424 425 1.591504 AATAAACAGGTTGCGGCGGG 61.592 55.000 9.78 0.00 0.00 6.13
425 426 0.455972 CAATAAACAGGTTGCGGCGG 60.456 55.000 9.78 0.00 0.00 6.13
426 427 1.070471 GCAATAAACAGGTTGCGGCG 61.070 55.000 0.51 0.51 0.00 6.46
427 428 0.735978 GGCAATAAACAGGTTGCGGC 60.736 55.000 0.00 0.00 41.01 6.53
428 429 0.108851 GGGCAATAAACAGGTTGCGG 60.109 55.000 4.28 0.00 41.01 5.69
429 430 0.108851 GGGGCAATAAACAGGTTGCG 60.109 55.000 4.28 0.00 41.01 4.85
430 431 0.972883 TGGGGCAATAAACAGGTTGC 59.027 50.000 1.70 1.70 39.51 4.17
431 432 1.275010 GGTGGGGCAATAAACAGGTTG 59.725 52.381 0.00 0.00 0.00 3.77
432 433 1.149077 AGGTGGGGCAATAAACAGGTT 59.851 47.619 0.00 0.00 0.00 3.50
433 434 0.783850 AGGTGGGGCAATAAACAGGT 59.216 50.000 0.00 0.00 0.00 4.00
434 435 2.025321 ACTAGGTGGGGCAATAAACAGG 60.025 50.000 0.00 0.00 0.00 4.00
435 436 3.366052 ACTAGGTGGGGCAATAAACAG 57.634 47.619 0.00 0.00 0.00 3.16
436 437 3.818295 AACTAGGTGGGGCAATAAACA 57.182 42.857 0.00 0.00 0.00 2.83
437 438 3.194755 CCAAACTAGGTGGGGCAATAAAC 59.805 47.826 0.00 0.00 32.03 2.01
438 439 3.436243 CCAAACTAGGTGGGGCAATAAA 58.564 45.455 0.00 0.00 32.03 1.40
439 440 3.094484 CCAAACTAGGTGGGGCAATAA 57.906 47.619 0.00 0.00 32.03 1.40
440 441 2.818751 CCAAACTAGGTGGGGCAATA 57.181 50.000 0.00 0.00 32.03 1.90
441 442 3.689832 CCAAACTAGGTGGGGCAAT 57.310 52.632 0.00 0.00 32.03 3.56
447 448 0.035056 CAGAGGCCCAAACTAGGTGG 60.035 60.000 0.00 7.58 35.77 4.61
448 449 0.035056 CCAGAGGCCCAAACTAGGTG 60.035 60.000 0.00 0.00 0.00 4.00
449 450 1.208165 CCCAGAGGCCCAAACTAGGT 61.208 60.000 0.00 0.00 0.00 3.08
450 451 1.609783 CCCAGAGGCCCAAACTAGG 59.390 63.158 0.00 0.00 0.00 3.02
461 462 1.821136 CAAAGCCTAAAAGCCCAGAGG 59.179 52.381 0.00 0.00 0.00 3.69
462 463 2.795329 TCAAAGCCTAAAAGCCCAGAG 58.205 47.619 0.00 0.00 0.00 3.35
463 464 2.969821 TCAAAGCCTAAAAGCCCAGA 57.030 45.000 0.00 0.00 0.00 3.86
464 465 2.353109 GCTTCAAAGCCTAAAAGCCCAG 60.353 50.000 3.27 0.00 46.20 4.45
465 466 1.618343 GCTTCAAAGCCTAAAAGCCCA 59.382 47.619 3.27 0.00 46.20 5.36
466 467 2.370281 GCTTCAAAGCCTAAAAGCCC 57.630 50.000 3.27 0.00 46.20 5.19
476 477 4.437524 GAATTCCGTTCTAGGCTTCAAAGC 60.438 45.833 6.18 6.18 41.22 3.51
477 478 4.695455 TGAATTCCGTTCTAGGCTTCAAAG 59.305 41.667 2.27 0.00 37.72 2.77
478 479 4.647611 TGAATTCCGTTCTAGGCTTCAAA 58.352 39.130 2.27 0.00 37.72 2.69
479 480 4.280436 TGAATTCCGTTCTAGGCTTCAA 57.720 40.909 2.27 0.00 37.72 2.69
480 481 3.973206 TGAATTCCGTTCTAGGCTTCA 57.027 42.857 2.27 0.00 37.72 3.02
481 482 5.815740 TGTTATGAATTCCGTTCTAGGCTTC 59.184 40.000 2.27 0.00 37.72 3.86
482 483 5.741011 TGTTATGAATTCCGTTCTAGGCTT 58.259 37.500 2.27 0.00 37.72 4.35
483 484 5.353394 TGTTATGAATTCCGTTCTAGGCT 57.647 39.130 2.27 0.00 37.72 4.58
484 485 6.038271 ACATTGTTATGAATTCCGTTCTAGGC 59.962 38.462 2.27 0.00 37.72 3.93
485 486 7.409697 CACATTGTTATGAATTCCGTTCTAGG 58.590 38.462 2.27 0.00 37.72 3.02
486 487 7.409697 CCACATTGTTATGAATTCCGTTCTAG 58.590 38.462 2.27 0.00 37.72 2.43
487 488 6.317642 CCCACATTGTTATGAATTCCGTTCTA 59.682 38.462 2.27 0.00 37.72 2.10
488 489 5.125417 CCCACATTGTTATGAATTCCGTTCT 59.875 40.000 2.27 0.00 37.72 3.01
489 490 5.339990 CCCACATTGTTATGAATTCCGTTC 58.660 41.667 2.27 0.00 35.65 3.95
490 491 4.381505 GCCCACATTGTTATGAATTCCGTT 60.382 41.667 2.27 0.00 35.65 4.44
491 492 3.130340 GCCCACATTGTTATGAATTCCGT 59.870 43.478 2.27 0.00 35.65 4.69
492 493 3.381272 AGCCCACATTGTTATGAATTCCG 59.619 43.478 2.27 0.00 35.65 4.30
493 494 5.343307 AAGCCCACATTGTTATGAATTCC 57.657 39.130 2.27 0.00 35.65 3.01
494 495 6.092533 CCAAAAGCCCACATTGTTATGAATTC 59.907 38.462 0.00 0.00 35.65 2.17
495 496 5.939296 CCAAAAGCCCACATTGTTATGAATT 59.061 36.000 0.00 0.00 35.65 2.17
496 497 5.490159 CCAAAAGCCCACATTGTTATGAAT 58.510 37.500 0.00 0.00 35.65 2.57
497 498 4.802248 GCCAAAAGCCCACATTGTTATGAA 60.802 41.667 0.00 0.00 33.68 2.57
498 499 3.306641 GCCAAAAGCCCACATTGTTATGA 60.307 43.478 0.00 0.00 33.68 2.15
499 500 3.002102 GCCAAAAGCCCACATTGTTATG 58.998 45.455 0.00 0.00 34.91 1.90
500 501 2.905736 AGCCAAAAGCCCACATTGTTAT 59.094 40.909 0.00 0.00 45.47 1.89
501 502 2.324541 AGCCAAAAGCCCACATTGTTA 58.675 42.857 0.00 0.00 45.47 2.41
509 510 1.757423 GAGCCAAAGCCAAAAGCCCA 61.757 55.000 0.00 0.00 45.47 5.36
523 524 2.092429 GGAATCCCACAATACAGAGCCA 60.092 50.000 0.00 0.00 0.00 4.75
554 555 6.411630 AAAACTTTAAAGCCACGGAAAAAC 57.588 33.333 15.24 0.00 0.00 2.43
588 589 2.757099 CAACCTCCTGCATGGGCC 60.757 66.667 0.00 0.00 40.13 5.80
733 1371 9.161629 TCGATGTGTTGTCATTAATTTAGACAT 57.838 29.630 7.66 4.05 41.42 3.06
844 3132 7.044510 CGTGCACTTATCTTCATGCTTAAATTG 60.045 37.037 16.19 0.00 38.90 2.32
867 3155 2.309693 CAGTGTGCTATGCAAAACGTG 58.690 47.619 0.00 0.00 41.47 4.49
952 3244 3.282021 CAATACTTATGCAGGCAGGTGT 58.718 45.455 0.00 1.09 0.00 4.16
1016 3308 2.158534 ACAAGGTAGAACATGGCAACCA 60.159 45.455 6.56 0.00 38.19 3.67
1035 3327 4.913335 AGAGAACGTCACAGAAACTACA 57.087 40.909 0.00 0.00 0.00 2.74
1043 3335 4.119862 TGGAAAAGAAGAGAACGTCACAG 58.880 43.478 0.00 0.00 0.00 3.66
1058 3350 3.260380 TGCCCATGTATGGTTTGGAAAAG 59.740 43.478 9.87 0.00 46.65 2.27
1095 3387 4.112634 TCACCTGATCTTTTTCGATAGCG 58.887 43.478 0.00 0.00 39.35 4.26
1098 3390 6.233905 TCCATCACCTGATCTTTTTCGATA 57.766 37.500 0.00 0.00 31.21 2.92
1111 3403 3.955471 ACCTACAATGTTCCATCACCTG 58.045 45.455 0.00 0.00 0.00 4.00
1130 3422 5.417580 TGCACACCTTTCCTAATATTGAACC 59.582 40.000 0.00 0.00 0.00 3.62
1314 3606 1.102978 ACAAACCTGCACAGTTGTCC 58.897 50.000 0.00 0.00 28.08 4.02
1631 3933 5.920193 TTGCAAGATCAAATAAAGGGGAG 57.080 39.130 0.00 0.00 0.00 4.30
1700 4315 6.998074 AGATGTGTTGAATCTCCACAACTTTA 59.002 34.615 8.98 0.00 44.25 1.85
1775 4390 5.749596 ATCGTTTTGCATTCCATATCGAA 57.250 34.783 0.00 0.00 32.89 3.71
1819 4440 5.753438 TCCATATCGTATGACACAAGCTTTC 59.247 40.000 0.00 0.00 0.00 2.62
1855 4476 6.206243 CCTCTCAAAACTGAAGATGACACAAT 59.794 38.462 0.00 0.00 0.00 2.71
1945 4567 2.419667 GCAATCATGGTGCTGCTTTTT 58.580 42.857 13.22 0.00 39.00 1.94
1958 4580 2.017049 GCAAACTCGGTAGGCAATCAT 58.983 47.619 0.00 0.00 0.00 2.45
2159 4781 6.224420 ACTAGTACATGAAAGCAAACGAAC 57.776 37.500 0.00 0.00 0.00 3.95
2308 4930 2.727123 TGTGGTTGAGGTGAACATGT 57.273 45.000 0.00 0.00 0.00 3.21
2399 5021 3.251729 CACAGTTACTTCACAGCTTGCAT 59.748 43.478 0.00 0.00 0.00 3.96
2406 5028 5.009710 TGACTAGGACACAGTTACTTCACAG 59.990 44.000 0.00 0.00 0.00 3.66
2419 5041 8.398665 GGAAATGAATTATGTTGACTAGGACAC 58.601 37.037 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.