Multiple sequence alignment - TraesCS1D01G389400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G389400 chr1D 100.000 2769 0 0 1 2769 461118683 461115915 0.000000e+00 5114.0
1 TraesCS1D01G389400 chr1D 82.692 312 43 10 2014 2317 220742513 220742821 1.630000e-67 267.0
2 TraesCS1D01G389400 chr1D 80.534 262 49 2 108 367 371219970 371220231 1.680000e-47 200.0
3 TraesCS1D01G389400 chr1D 89.286 84 8 1 2686 2769 461057475 461057393 1.360000e-18 104.0
4 TraesCS1D01G389400 chr1A 94.016 1972 79 14 30 1998 552183034 552181099 0.000000e+00 2952.0
5 TraesCS1D01G389400 chr1A 94.231 1820 66 9 2 1806 552203518 552201723 0.000000e+00 2743.0
6 TraesCS1D01G389400 chr1A 80.159 252 49 1 108 358 470396909 470397160 1.310000e-43 187.0
7 TraesCS1D01G389400 chr1A 88.525 61 5 2 4 63 552203072 552203013 3.830000e-09 73.1
8 TraesCS1D01G389400 chr1B 92.861 2045 95 16 1 1998 633322070 633320030 0.000000e+00 2920.0
9 TraesCS1D01G389400 chr1B 77.936 281 53 9 113 390 408655114 408654840 1.710000e-37 167.0
10 TraesCS1D01G389400 chr1B 89.091 55 4 2 10 63 633321615 633321562 1.780000e-07 67.6
11 TraesCS1D01G389400 chr2D 87.248 298 30 7 2019 2310 27538916 27539211 1.590000e-87 333.0
12 TraesCS1D01G389400 chr2D 82.278 316 44 11 2012 2318 518207756 518208068 2.110000e-66 263.0
13 TraesCS1D01G389400 chr3D 84.091 308 40 8 2014 2314 578759124 578759429 3.490000e-74 289.0
14 TraesCS1D01G389400 chr3D 83.067 313 40 12 2012 2316 162734204 162733897 3.510000e-69 272.0
15 TraesCS1D01G389400 chr3D 82.278 316 44 11 2014 2321 343695534 343695845 2.110000e-66 263.0
16 TraesCS1D01G389400 chr5D 81.250 368 50 18 2011 2367 390529547 390529906 2.100000e-71 279.0
17 TraesCS1D01G389400 chr2B 83.713 307 39 10 2012 2310 167774605 167774908 2.100000e-71 279.0
18 TraesCS1D01G389400 chr2B 77.039 331 61 11 250 577 599664447 599664765 2.830000e-40 176.0
19 TraesCS1D01G389400 chr5A 83.007 306 41 10 2012 2309 668245137 668244835 1.630000e-67 267.0
20 TraesCS1D01G389400 chr7B 77.136 398 84 6 108 503 509511218 509511610 9.980000e-55 224.0
21 TraesCS1D01G389400 chr5B 82.857 245 35 5 136 379 692280627 692280865 2.160000e-51 213.0
22 TraesCS1D01G389400 chr2A 80.216 278 45 10 108 379 680101592 680101865 1.680000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G389400 chr1D 461115915 461118683 2768 True 5114.00 5114 100.000 1 2769 1 chr1D.!!$R2 2768
1 TraesCS1D01G389400 chr1A 552181099 552183034 1935 True 2952.00 2952 94.016 30 1998 1 chr1A.!!$R1 1968
2 TraesCS1D01G389400 chr1A 552201723 552203518 1795 True 1408.05 2743 91.378 2 1806 2 chr1A.!!$R2 1804
3 TraesCS1D01G389400 chr1B 633320030 633322070 2040 True 1493.80 2920 90.976 1 1998 2 chr1B.!!$R2 1997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 489 1.169577 ATTTTGTGCGGCATCGGTTA 58.83 45.0 5.72 0.0 36.79 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2462 2513 0.040499 ACCAAACACACACCCTGGTT 59.96 50.0 0.0 0.0 37.05 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
253 273 9.495382 AGTTTGGATAGGAGAAGACTAGTAAAT 57.505 33.333 0.00 0.00 0.00 1.40
332 352 5.584649 GGAAGGGAAGGAAAGTTTTGTTTTG 59.415 40.000 0.00 0.00 0.00 2.44
469 489 1.169577 ATTTTGTGCGGCATCGGTTA 58.830 45.000 5.72 0.00 36.79 2.85
625 645 9.073475 ACACTAATTTTGACTGGCTTGTTAATA 57.927 29.630 0.00 0.00 0.00 0.98
650 670 5.006896 TGGATACTGACCGTATTCCCTAT 57.993 43.478 0.00 0.00 38.90 2.57
1006 1026 3.009723 GTGCAACTAAGAAGCATGGCTA 58.990 45.455 0.00 0.00 38.25 3.93
1007 1027 3.629398 GTGCAACTAAGAAGCATGGCTAT 59.371 43.478 0.00 0.00 38.25 2.97
1070 1090 2.018515 CTTCGTGGTACCTCTCTCTCC 58.981 57.143 14.36 0.00 0.00 3.71
1082 1102 3.312890 CTCTCTCTCCCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
1086 1106 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
1088 1108 2.036475 CTCCCTCTCTCTCTCTCTCTCG 59.964 59.091 0.00 0.00 0.00 4.04
1100 1148 7.663493 TCTCTCTCTCTCTCGCAATATATCAAA 59.337 37.037 0.00 0.00 0.00 2.69
1135 1183 5.879237 ACATATGTTTAACCATGAGTTGCG 58.121 37.500 1.41 0.00 39.67 4.85
1199 1248 8.795842 AGAATCATACAAACCGGTATGTTTAA 57.204 30.769 8.00 0.00 46.78 1.52
1230 1279 0.888736 CATGGTGCTGGTGAAACGGA 60.889 55.000 0.00 0.00 38.12 4.69
1399 1449 8.523915 AAATTCTAAGTCCATGCATGTCAATA 57.476 30.769 24.58 11.55 0.00 1.90
1527 1578 6.872628 AAGTAATATGCATGATGGTGTCAG 57.127 37.500 10.16 0.00 40.92 3.51
1663 1714 8.677300 CCATGCAATTTCTATTGTAACTACTGT 58.323 33.333 0.00 0.00 42.56 3.55
1744 1795 3.630312 GCTACAACAACTTGAAGACCCAA 59.370 43.478 0.00 0.00 0.00 4.12
1818 1869 8.514330 TCCAAGTTTTACAGTCTTGTTGTATT 57.486 30.769 0.00 0.00 38.76 1.89
1819 1870 8.617809 TCCAAGTTTTACAGTCTTGTTGTATTC 58.382 33.333 0.00 0.00 38.76 1.75
1958 2009 1.686355 ATGGGTCGTTTGCTTGTCAA 58.314 45.000 0.00 0.00 0.00 3.18
1969 2020 5.348164 GTTTGCTTGTCAACCATACTTTGT 58.652 37.500 0.00 0.00 33.73 2.83
1990 2041 8.902540 TTTGTCACACATCTTATAGACAAGTT 57.097 30.769 0.00 0.00 43.95 2.66
1993 2044 8.147704 TGTCACACATCTTATAGACAAGTTTGA 58.852 33.333 0.00 0.00 33.55 2.69
1998 2049 7.959651 CACATCTTATAGACAAGTTTGACAAGC 59.040 37.037 0.00 0.00 0.00 4.01
1999 2050 6.706055 TCTTATAGACAAGTTTGACAAGCG 57.294 37.500 0.00 0.00 0.00 4.68
2000 2051 5.637810 TCTTATAGACAAGTTTGACAAGCGG 59.362 40.000 0.00 0.00 0.00 5.52
2001 2052 2.038387 AGACAAGTTTGACAAGCGGT 57.962 45.000 0.00 2.91 0.00 5.68
2002 2053 3.188159 AGACAAGTTTGACAAGCGGTA 57.812 42.857 0.00 0.00 0.00 4.02
2003 2054 3.740115 AGACAAGTTTGACAAGCGGTAT 58.260 40.909 0.00 0.00 0.00 2.73
2004 2055 3.498397 AGACAAGTTTGACAAGCGGTATG 59.502 43.478 0.00 0.00 0.00 2.39
2005 2056 2.552315 ACAAGTTTGACAAGCGGTATGG 59.448 45.455 0.00 0.00 0.00 2.74
2006 2057 2.811431 CAAGTTTGACAAGCGGTATGGA 59.189 45.455 0.00 0.00 0.00 3.41
2007 2058 3.350219 AGTTTGACAAGCGGTATGGAT 57.650 42.857 0.00 0.00 0.00 3.41
2008 2059 4.481368 AGTTTGACAAGCGGTATGGATA 57.519 40.909 0.00 0.00 0.00 2.59
2009 2060 4.189231 AGTTTGACAAGCGGTATGGATAC 58.811 43.478 0.00 0.00 0.00 2.24
2010 2061 4.081087 AGTTTGACAAGCGGTATGGATACT 60.081 41.667 0.00 0.00 33.81 2.12
2011 2062 5.128171 AGTTTGACAAGCGGTATGGATACTA 59.872 40.000 0.00 0.00 33.81 1.82
2012 2063 5.801531 TTGACAAGCGGTATGGATACTAT 57.198 39.130 0.00 0.00 33.81 2.12
2013 2064 5.801531 TGACAAGCGGTATGGATACTATT 57.198 39.130 0.00 0.00 33.81 1.73
2014 2065 6.169557 TGACAAGCGGTATGGATACTATTT 57.830 37.500 0.00 0.00 33.81 1.40
2015 2066 6.588204 TGACAAGCGGTATGGATACTATTTT 58.412 36.000 0.00 0.00 33.81 1.82
2016 2067 7.051623 TGACAAGCGGTATGGATACTATTTTT 58.948 34.615 0.00 0.00 33.81 1.94
2042 2093 9.693739 TTTCAGATTTTACTATTAATGCTGGGA 57.306 29.630 0.00 0.00 0.00 4.37
2043 2094 9.866655 TTCAGATTTTACTATTAATGCTGGGAT 57.133 29.630 0.00 0.00 0.00 3.85
2044 2095 9.507329 TCAGATTTTACTATTAATGCTGGGATC 57.493 33.333 0.00 0.00 0.00 3.36
2045 2096 9.288576 CAGATTTTACTATTAATGCTGGGATCA 57.711 33.333 0.00 0.00 0.00 2.92
2052 2103 8.212259 ACTATTAATGCTGGGATCATAAGAGT 57.788 34.615 0.00 0.00 0.00 3.24
2053 2104 8.317679 ACTATTAATGCTGGGATCATAAGAGTC 58.682 37.037 0.00 0.00 0.00 3.36
2054 2105 6.499106 TTAATGCTGGGATCATAAGAGTCA 57.501 37.500 0.00 0.00 0.00 3.41
2055 2106 5.378230 AATGCTGGGATCATAAGAGTCAA 57.622 39.130 0.00 0.00 0.00 3.18
2056 2107 4.842531 TGCTGGGATCATAAGAGTCAAA 57.157 40.909 0.00 0.00 0.00 2.69
2057 2108 4.517285 TGCTGGGATCATAAGAGTCAAAC 58.483 43.478 0.00 0.00 0.00 2.93
2058 2109 4.225942 TGCTGGGATCATAAGAGTCAAACT 59.774 41.667 0.00 0.00 0.00 2.66
2059 2110 4.813697 GCTGGGATCATAAGAGTCAAACTC 59.186 45.833 0.00 0.00 45.38 3.01
2070 2121 4.278975 GAGTCAAACTCAGATGGGAACT 57.721 45.455 2.28 0.00 44.45 3.01
2071 2122 4.646572 GAGTCAAACTCAGATGGGAACTT 58.353 43.478 2.28 0.00 44.45 2.66
2072 2123 5.053978 AGTCAAACTCAGATGGGAACTTT 57.946 39.130 0.00 0.00 0.00 2.66
2073 2124 5.066593 AGTCAAACTCAGATGGGAACTTTC 58.933 41.667 0.00 0.00 0.00 2.62
2074 2125 4.216472 GTCAAACTCAGATGGGAACTTTCC 59.784 45.833 0.00 0.00 46.82 3.13
2106 2157 4.868314 TCATGAATGAAAACCACATGCA 57.132 36.364 0.00 0.00 37.64 3.96
2107 2158 4.558178 TCATGAATGAAAACCACATGCAC 58.442 39.130 0.00 0.00 36.32 4.57
2108 2159 4.038883 TCATGAATGAAAACCACATGCACA 59.961 37.500 0.00 0.00 36.32 4.57
2109 2160 4.603989 TGAATGAAAACCACATGCACAT 57.396 36.364 0.00 0.00 29.47 3.21
2110 2161 5.718724 TGAATGAAAACCACATGCACATA 57.281 34.783 0.00 0.00 29.47 2.29
2111 2162 6.283544 TGAATGAAAACCACATGCACATAT 57.716 33.333 0.00 0.00 29.47 1.78
2112 2163 7.401955 TGAATGAAAACCACATGCACATATA 57.598 32.000 0.00 0.00 29.47 0.86
2113 2164 7.482474 TGAATGAAAACCACATGCACATATAG 58.518 34.615 0.00 0.00 29.47 1.31
2114 2165 5.833406 TGAAAACCACATGCACATATAGG 57.167 39.130 0.00 0.00 0.00 2.57
2115 2166 5.260424 TGAAAACCACATGCACATATAGGT 58.740 37.500 0.00 0.00 0.00 3.08
2116 2167 5.125257 TGAAAACCACATGCACATATAGGTG 59.875 40.000 13.10 13.10 41.72 4.00
2117 2168 4.502105 AACCACATGCACATATAGGTGA 57.498 40.909 21.10 6.89 41.32 4.02
2118 2169 4.712051 ACCACATGCACATATAGGTGAT 57.288 40.909 21.10 8.79 41.32 3.06
2119 2170 4.392047 ACCACATGCACATATAGGTGATG 58.608 43.478 21.10 19.99 41.32 3.07
2120 2171 4.141413 ACCACATGCACATATAGGTGATGT 60.141 41.667 21.10 20.53 41.32 3.06
2121 2172 4.823442 CCACATGCACATATAGGTGATGTT 59.177 41.667 21.10 9.31 41.32 2.71
2122 2173 5.300034 CCACATGCACATATAGGTGATGTTT 59.700 40.000 21.10 4.96 41.32 2.83
2123 2174 6.183360 CCACATGCACATATAGGTGATGTTTT 60.183 38.462 21.10 4.38 41.32 2.43
2124 2175 7.259882 CACATGCACATATAGGTGATGTTTTT 58.740 34.615 21.10 4.09 41.32 1.94
2125 2176 7.433131 CACATGCACATATAGGTGATGTTTTTC 59.567 37.037 21.10 1.55 41.32 2.29
2126 2177 7.340232 ACATGCACATATAGGTGATGTTTTTCT 59.660 33.333 21.10 3.21 41.32 2.52
2127 2178 7.087409 TGCACATATAGGTGATGTTTTTCTG 57.913 36.000 21.10 0.00 41.32 3.02
2128 2179 6.883756 TGCACATATAGGTGATGTTTTTCTGA 59.116 34.615 21.10 0.00 41.32 3.27
2129 2180 7.392953 TGCACATATAGGTGATGTTTTTCTGAA 59.607 33.333 21.10 0.00 41.32 3.02
2130 2181 7.698130 GCACATATAGGTGATGTTTTTCTGAAC 59.302 37.037 21.10 0.00 41.32 3.18
2131 2182 8.729756 CACATATAGGTGATGTTTTTCTGAACA 58.270 33.333 12.10 0.00 43.08 3.18
2166 2217 8.459521 TTTTTGCATATTTCCGAGTTTGTATG 57.540 30.769 0.00 0.00 0.00 2.39
2167 2218 6.993786 TTGCATATTTCCGAGTTTGTATGA 57.006 33.333 0.00 0.00 0.00 2.15
2168 2219 6.993786 TGCATATTTCCGAGTTTGTATGAA 57.006 33.333 0.00 0.00 0.00 2.57
2169 2220 7.566760 TGCATATTTCCGAGTTTGTATGAAT 57.433 32.000 0.00 0.00 0.00 2.57
2170 2221 7.995289 TGCATATTTCCGAGTTTGTATGAATT 58.005 30.769 0.00 0.00 0.00 2.17
2171 2222 8.465999 TGCATATTTCCGAGTTTGTATGAATTT 58.534 29.630 0.00 0.00 0.00 1.82
2172 2223 9.301153 GCATATTTCCGAGTTTGTATGAATTTT 57.699 29.630 0.00 0.00 0.00 1.82
2194 2245 7.979115 TTTTTATGAGGTTTTCAAAGTGACG 57.021 32.000 0.00 0.00 39.77 4.35
2195 2246 5.682943 TTATGAGGTTTTCAAAGTGACGG 57.317 39.130 0.00 0.00 39.77 4.79
2196 2247 2.993937 TGAGGTTTTCAAAGTGACGGT 58.006 42.857 0.00 0.00 31.34 4.83
2197 2248 2.940410 TGAGGTTTTCAAAGTGACGGTC 59.060 45.455 0.00 0.00 31.34 4.79
2198 2249 2.940410 GAGGTTTTCAAAGTGACGGTCA 59.060 45.455 6.76 6.76 0.00 4.02
2199 2250 3.349022 AGGTTTTCAAAGTGACGGTCAA 58.651 40.909 13.23 0.00 0.00 3.18
2200 2251 3.759618 AGGTTTTCAAAGTGACGGTCAAA 59.240 39.130 13.23 0.00 0.00 2.69
2201 2252 4.218852 AGGTTTTCAAAGTGACGGTCAAAA 59.781 37.500 13.23 6.62 0.00 2.44
2202 2253 4.561213 GGTTTTCAAAGTGACGGTCAAAAG 59.439 41.667 13.23 3.78 0.00 2.27
2203 2254 4.364415 TTTCAAAGTGACGGTCAAAAGG 57.636 40.909 13.23 3.76 0.00 3.11
2204 2255 1.673920 TCAAAGTGACGGTCAAAAGGC 59.326 47.619 13.23 0.00 0.00 4.35
2205 2256 1.403679 CAAAGTGACGGTCAAAAGGCA 59.596 47.619 13.23 0.00 0.00 4.75
2206 2257 1.757682 AAGTGACGGTCAAAAGGCAA 58.242 45.000 13.23 0.00 0.00 4.52
2207 2258 1.757682 AGTGACGGTCAAAAGGCAAA 58.242 45.000 13.23 0.00 0.00 3.68
2208 2259 2.096248 AGTGACGGTCAAAAGGCAAAA 58.904 42.857 13.23 0.00 0.00 2.44
2209 2260 2.693074 AGTGACGGTCAAAAGGCAAAAT 59.307 40.909 13.23 0.00 0.00 1.82
2210 2261 3.049912 GTGACGGTCAAAAGGCAAAATC 58.950 45.455 13.23 0.00 0.00 2.17
2211 2262 2.690497 TGACGGTCAAAAGGCAAAATCA 59.310 40.909 8.68 0.00 0.00 2.57
2212 2263 3.320541 TGACGGTCAAAAGGCAAAATCAT 59.679 39.130 8.68 0.00 0.00 2.45
2213 2264 4.520874 TGACGGTCAAAAGGCAAAATCATA 59.479 37.500 8.68 0.00 0.00 2.15
2214 2265 5.010112 TGACGGTCAAAAGGCAAAATCATAA 59.990 36.000 8.68 0.00 0.00 1.90
2215 2266 5.469479 ACGGTCAAAAGGCAAAATCATAAG 58.531 37.500 0.00 0.00 0.00 1.73
2216 2267 5.242838 ACGGTCAAAAGGCAAAATCATAAGA 59.757 36.000 0.00 0.00 0.00 2.10
2217 2268 5.801947 CGGTCAAAAGGCAAAATCATAAGAG 59.198 40.000 0.00 0.00 0.00 2.85
2218 2269 6.570378 CGGTCAAAAGGCAAAATCATAAGAGT 60.570 38.462 0.00 0.00 0.00 3.24
2219 2270 6.587608 GGTCAAAAGGCAAAATCATAAGAGTG 59.412 38.462 0.00 0.00 0.00 3.51
2220 2271 7.370383 GTCAAAAGGCAAAATCATAAGAGTGA 58.630 34.615 0.00 0.00 0.00 3.41
2221 2272 7.867403 GTCAAAAGGCAAAATCATAAGAGTGAA 59.133 33.333 0.00 0.00 0.00 3.18
2222 2273 8.084073 TCAAAAGGCAAAATCATAAGAGTGAAG 58.916 33.333 0.00 0.00 0.00 3.02
2223 2274 7.530426 AAAGGCAAAATCATAAGAGTGAAGT 57.470 32.000 0.00 0.00 0.00 3.01
2224 2275 6.506500 AGGCAAAATCATAAGAGTGAAGTG 57.493 37.500 0.00 0.00 0.00 3.16
2225 2276 5.416952 AGGCAAAATCATAAGAGTGAAGTGG 59.583 40.000 0.00 0.00 0.00 4.00
2226 2277 5.098211 GCAAAATCATAAGAGTGAAGTGGC 58.902 41.667 0.00 0.00 0.00 5.01
2227 2278 5.105997 GCAAAATCATAAGAGTGAAGTGGCT 60.106 40.000 0.00 0.00 0.00 4.75
2228 2279 6.571150 GCAAAATCATAAGAGTGAAGTGGCTT 60.571 38.462 0.00 0.00 0.00 4.35
2229 2280 6.506500 AAATCATAAGAGTGAAGTGGCTTG 57.493 37.500 0.00 0.00 0.00 4.01
2230 2281 3.942829 TCATAAGAGTGAAGTGGCTTGG 58.057 45.455 0.00 0.00 0.00 3.61
2231 2282 2.859165 TAAGAGTGAAGTGGCTTGGG 57.141 50.000 0.00 0.00 0.00 4.12
2232 2283 0.846693 AAGAGTGAAGTGGCTTGGGT 59.153 50.000 0.00 0.00 0.00 4.51
2233 2284 1.729586 AGAGTGAAGTGGCTTGGGTA 58.270 50.000 0.00 0.00 0.00 3.69
2234 2285 1.625818 AGAGTGAAGTGGCTTGGGTAG 59.374 52.381 0.00 0.00 0.00 3.18
2235 2286 1.623811 GAGTGAAGTGGCTTGGGTAGA 59.376 52.381 0.00 0.00 0.00 2.59
2236 2287 2.038557 GAGTGAAGTGGCTTGGGTAGAA 59.961 50.000 0.00 0.00 0.00 2.10
2237 2288 2.152016 GTGAAGTGGCTTGGGTAGAAC 58.848 52.381 0.00 0.00 0.00 3.01
2238 2289 1.771854 TGAAGTGGCTTGGGTAGAACA 59.228 47.619 0.00 0.00 0.00 3.18
2239 2290 2.173782 TGAAGTGGCTTGGGTAGAACAA 59.826 45.455 0.00 0.00 0.00 2.83
2240 2291 2.568623 AGTGGCTTGGGTAGAACAAG 57.431 50.000 0.00 0.00 46.15 3.16
2241 2292 1.774856 AGTGGCTTGGGTAGAACAAGT 59.225 47.619 6.98 0.00 45.38 3.16
2242 2293 1.880027 GTGGCTTGGGTAGAACAAGTG 59.120 52.381 6.98 0.00 45.38 3.16
2243 2294 0.881796 GGCTTGGGTAGAACAAGTGC 59.118 55.000 6.98 0.00 45.38 4.40
2244 2295 1.545651 GGCTTGGGTAGAACAAGTGCT 60.546 52.381 6.98 0.00 45.38 4.40
2245 2296 2.230660 GCTTGGGTAGAACAAGTGCTT 58.769 47.619 6.98 0.00 45.38 3.91
2246 2297 2.623416 GCTTGGGTAGAACAAGTGCTTT 59.377 45.455 6.98 0.00 45.38 3.51
2247 2298 3.304726 GCTTGGGTAGAACAAGTGCTTTC 60.305 47.826 6.98 0.00 45.38 2.62
2248 2299 3.857157 TGGGTAGAACAAGTGCTTTCT 57.143 42.857 0.00 0.00 36.10 2.52
2249 2300 3.476552 TGGGTAGAACAAGTGCTTTCTG 58.523 45.455 0.00 0.00 33.96 3.02
2250 2301 3.135712 TGGGTAGAACAAGTGCTTTCTGA 59.864 43.478 0.00 0.00 33.96 3.27
2251 2302 4.134563 GGGTAGAACAAGTGCTTTCTGAA 58.865 43.478 0.00 0.00 33.96 3.02
2252 2303 4.578928 GGGTAGAACAAGTGCTTTCTGAAA 59.421 41.667 2.44 2.44 33.96 2.69
2253 2304 5.067283 GGGTAGAACAAGTGCTTTCTGAAAA 59.933 40.000 4.18 0.00 33.96 2.29
2254 2305 6.239036 GGGTAGAACAAGTGCTTTCTGAAAAT 60.239 38.462 4.18 0.00 33.96 1.82
2255 2306 7.203218 GGTAGAACAAGTGCTTTCTGAAAATT 58.797 34.615 4.18 0.00 33.96 1.82
2256 2307 8.349983 GGTAGAACAAGTGCTTTCTGAAAATTA 58.650 33.333 4.18 0.00 33.96 1.40
2257 2308 9.730420 GTAGAACAAGTGCTTTCTGAAAATTAA 57.270 29.630 4.18 0.00 33.96 1.40
2258 2309 8.862550 AGAACAAGTGCTTTCTGAAAATTAAG 57.137 30.769 4.18 0.00 30.65 1.85
2259 2310 7.922811 AGAACAAGTGCTTTCTGAAAATTAAGG 59.077 33.333 4.18 0.00 30.65 2.69
2260 2311 6.515832 ACAAGTGCTTTCTGAAAATTAAGGG 58.484 36.000 4.18 0.00 0.00 3.95
2261 2312 6.098266 ACAAGTGCTTTCTGAAAATTAAGGGT 59.902 34.615 4.18 0.00 0.00 4.34
2262 2313 7.286775 ACAAGTGCTTTCTGAAAATTAAGGGTA 59.713 33.333 4.18 0.00 0.00 3.69
2263 2314 7.833285 AGTGCTTTCTGAAAATTAAGGGTAA 57.167 32.000 4.18 0.00 0.00 2.85
2264 2315 8.245195 AGTGCTTTCTGAAAATTAAGGGTAAA 57.755 30.769 4.18 0.00 0.00 2.01
2265 2316 8.700973 AGTGCTTTCTGAAAATTAAGGGTAAAA 58.299 29.630 4.18 0.00 0.00 1.52
2266 2317 8.761497 GTGCTTTCTGAAAATTAAGGGTAAAAC 58.239 33.333 4.18 0.00 0.00 2.43
2267 2318 8.478877 TGCTTTCTGAAAATTAAGGGTAAAACA 58.521 29.630 4.18 0.00 0.00 2.83
2268 2319 9.320352 GCTTTCTGAAAATTAAGGGTAAAACAA 57.680 29.630 4.18 0.00 0.00 2.83
2270 2321 9.602568 TTTCTGAAAATTAAGGGTAAAACAACC 57.397 29.630 0.00 0.00 38.94 3.77
2271 2322 7.427214 TCTGAAAATTAAGGGTAAAACAACCG 58.573 34.615 0.00 0.00 40.73 4.44
2272 2323 7.284944 TCTGAAAATTAAGGGTAAAACAACCGA 59.715 33.333 0.00 0.00 40.73 4.69
2273 2324 7.427214 TGAAAATTAAGGGTAAAACAACCGAG 58.573 34.615 0.00 0.00 40.73 4.63
2274 2325 6.964807 AAATTAAGGGTAAAACAACCGAGT 57.035 33.333 0.00 0.00 40.73 4.18
2275 2326 5.952526 ATTAAGGGTAAAACAACCGAGTG 57.047 39.130 0.00 0.00 40.73 3.51
2276 2327 3.564053 AAGGGTAAAACAACCGAGTGA 57.436 42.857 0.00 0.00 40.73 3.41
2277 2328 3.121738 AGGGTAAAACAACCGAGTGAG 57.878 47.619 0.00 0.00 40.73 3.51
2278 2329 2.701951 AGGGTAAAACAACCGAGTGAGA 59.298 45.455 0.00 0.00 40.73 3.27
2279 2330 3.326880 AGGGTAAAACAACCGAGTGAGAT 59.673 43.478 0.00 0.00 40.73 2.75
2280 2331 4.529377 AGGGTAAAACAACCGAGTGAGATA 59.471 41.667 0.00 0.00 40.73 1.98
2281 2332 4.628766 GGGTAAAACAACCGAGTGAGATAC 59.371 45.833 0.00 0.00 40.73 2.24
2282 2333 5.232463 GGTAAAACAACCGAGTGAGATACA 58.768 41.667 0.00 0.00 0.00 2.29
2283 2334 5.697633 GGTAAAACAACCGAGTGAGATACAA 59.302 40.000 0.00 0.00 0.00 2.41
2284 2335 5.668558 AAAACAACCGAGTGAGATACAAC 57.331 39.130 0.00 0.00 0.00 3.32
2285 2336 4.602340 AACAACCGAGTGAGATACAACT 57.398 40.909 0.00 0.00 0.00 3.16
2286 2337 5.717078 AACAACCGAGTGAGATACAACTA 57.283 39.130 0.00 0.00 0.00 2.24
2287 2338 5.312120 ACAACCGAGTGAGATACAACTAG 57.688 43.478 0.00 0.00 0.00 2.57
2288 2339 4.158025 ACAACCGAGTGAGATACAACTAGG 59.842 45.833 0.00 1.06 33.01 3.02
2289 2340 3.288964 ACCGAGTGAGATACAACTAGGG 58.711 50.000 6.86 0.26 32.01 3.53
2290 2341 2.623889 CCGAGTGAGATACAACTAGGGG 59.376 54.545 0.00 0.00 0.00 4.79
2291 2342 2.034812 CGAGTGAGATACAACTAGGGGC 59.965 54.545 0.00 0.00 0.00 5.80
2292 2343 3.031736 GAGTGAGATACAACTAGGGGCA 58.968 50.000 0.00 0.00 0.00 5.36
2293 2344 3.643792 GAGTGAGATACAACTAGGGGCAT 59.356 47.826 0.00 0.00 0.00 4.40
2294 2345 4.816126 AGTGAGATACAACTAGGGGCATA 58.184 43.478 0.00 0.00 0.00 3.14
2295 2346 5.216622 AGTGAGATACAACTAGGGGCATAA 58.783 41.667 0.00 0.00 0.00 1.90
2296 2347 5.665812 AGTGAGATACAACTAGGGGCATAAA 59.334 40.000 0.00 0.00 0.00 1.40
2297 2348 6.157994 AGTGAGATACAACTAGGGGCATAAAA 59.842 38.462 0.00 0.00 0.00 1.52
2298 2349 6.998673 GTGAGATACAACTAGGGGCATAAAAT 59.001 38.462 0.00 0.00 0.00 1.82
2299 2350 7.502561 GTGAGATACAACTAGGGGCATAAAATT 59.497 37.037 0.00 0.00 0.00 1.82
2300 2351 8.719596 TGAGATACAACTAGGGGCATAAAATTA 58.280 33.333 0.00 0.00 0.00 1.40
2301 2352 9.569122 GAGATACAACTAGGGGCATAAAATTAA 57.431 33.333 0.00 0.00 0.00 1.40
2343 2394 8.843885 TTGCAAACATTTTATGGAATTCATGA 57.156 26.923 7.93 0.00 37.30 3.07
2344 2395 8.843885 TGCAAACATTTTATGGAATTCATGAA 57.156 26.923 11.26 11.26 37.30 2.57
2345 2396 9.451002 TGCAAACATTTTATGGAATTCATGAAT 57.549 25.926 15.36 15.36 37.30 2.57
2419 2470 7.846644 AACTGATTGAAAATCTGTTTTGCAA 57.153 28.000 15.39 6.99 37.65 4.08
2420 2471 7.846644 ACTGATTGAAAATCTGTTTTGCAAA 57.153 28.000 8.05 8.05 37.65 3.68
2421 2472 8.266392 ACTGATTGAAAATCTGTTTTGCAAAA 57.734 26.923 20.46 20.46 37.65 2.44
2422 2473 8.392612 ACTGATTGAAAATCTGTTTTGCAAAAG 58.607 29.630 24.46 14.19 37.65 2.27
2423 2474 8.489990 TGATTGAAAATCTGTTTTGCAAAAGA 57.510 26.923 24.46 21.76 37.65 2.52
2424 2475 8.944029 TGATTGAAAATCTGTTTTGCAAAAGAA 58.056 25.926 24.46 14.72 37.65 2.52
2425 2476 9.771915 GATTGAAAATCTGTTTTGCAAAAGAAA 57.228 25.926 24.46 11.34 37.65 2.52
2427 2478 9.956720 TTGAAAATCTGTTTTGCAAAAGAAAAA 57.043 22.222 24.46 11.93 37.65 1.94
2459 2510 6.895607 AAAAACCGATAAAACAAACACCAG 57.104 33.333 0.00 0.00 0.00 4.00
2460 2511 5.838531 AAACCGATAAAACAAACACCAGA 57.161 34.783 0.00 0.00 0.00 3.86
2461 2512 5.432885 AACCGATAAAACAAACACCAGAG 57.567 39.130 0.00 0.00 0.00 3.35
2462 2513 4.710324 ACCGATAAAACAAACACCAGAGA 58.290 39.130 0.00 0.00 0.00 3.10
2463 2514 5.127491 ACCGATAAAACAAACACCAGAGAA 58.873 37.500 0.00 0.00 0.00 2.87
2464 2515 5.008316 ACCGATAAAACAAACACCAGAGAAC 59.992 40.000 0.00 0.00 0.00 3.01
2465 2516 5.449304 CGATAAAACAAACACCAGAGAACC 58.551 41.667 0.00 0.00 0.00 3.62
2466 2517 5.008217 CGATAAAACAAACACCAGAGAACCA 59.992 40.000 0.00 0.00 0.00 3.67
2467 2518 4.718940 AAAACAAACACCAGAGAACCAG 57.281 40.909 0.00 0.00 0.00 4.00
2468 2519 2.348411 ACAAACACCAGAGAACCAGG 57.652 50.000 0.00 0.00 0.00 4.45
2469 2520 1.133792 ACAAACACCAGAGAACCAGGG 60.134 52.381 0.00 0.00 0.00 4.45
2470 2521 1.133792 CAAACACCAGAGAACCAGGGT 60.134 52.381 0.00 0.00 0.00 4.34
2472 2523 2.145865 CACCAGAGAACCAGGGTGT 58.854 57.895 0.00 0.00 44.47 4.16
2473 2524 0.250467 CACCAGAGAACCAGGGTGTG 60.250 60.000 0.00 0.00 44.47 3.82
2474 2525 0.694444 ACCAGAGAACCAGGGTGTGT 60.694 55.000 0.00 0.00 31.04 3.72
2475 2526 0.250467 CCAGAGAACCAGGGTGTGTG 60.250 60.000 0.00 0.00 0.00 3.82
2476 2527 0.469917 CAGAGAACCAGGGTGTGTGT 59.530 55.000 0.00 0.00 0.00 3.72
2477 2528 1.134098 CAGAGAACCAGGGTGTGTGTT 60.134 52.381 0.00 0.00 0.00 3.32
2478 2529 1.564348 AGAGAACCAGGGTGTGTGTTT 59.436 47.619 0.00 0.00 0.00 2.83
2479 2530 1.676006 GAGAACCAGGGTGTGTGTTTG 59.324 52.381 0.00 0.00 0.00 2.93
2480 2531 0.744281 GAACCAGGGTGTGTGTTTGG 59.256 55.000 0.00 0.00 35.07 3.28
2481 2532 0.040499 AACCAGGGTGTGTGTTTGGT 59.960 50.000 0.00 0.00 43.66 3.67
2482 2533 0.395173 ACCAGGGTGTGTGTTTGGTC 60.395 55.000 0.00 0.00 37.60 4.02
2483 2534 1.444119 CCAGGGTGTGTGTTTGGTCG 61.444 60.000 0.00 0.00 0.00 4.79
2484 2535 1.153046 AGGGTGTGTGTTTGGTCGG 60.153 57.895 0.00 0.00 0.00 4.79
2485 2536 1.452470 GGGTGTGTGTTTGGTCGGT 60.452 57.895 0.00 0.00 0.00 4.69
2486 2537 1.441732 GGGTGTGTGTTTGGTCGGTC 61.442 60.000 0.00 0.00 0.00 4.79
2487 2538 1.441732 GGTGTGTGTTTGGTCGGTCC 61.442 60.000 0.00 0.00 0.00 4.46
2488 2539 1.153127 TGTGTGTTTGGTCGGTCCC 60.153 57.895 0.00 0.00 34.77 4.46
2489 2540 1.895231 GTGTGTTTGGTCGGTCCCC 60.895 63.158 0.00 0.00 34.77 4.81
2490 2541 2.376165 TGTGTTTGGTCGGTCCCCA 61.376 57.895 0.00 0.00 34.77 4.96
2491 2542 1.895231 GTGTTTGGTCGGTCCCCAC 60.895 63.158 0.00 0.00 34.77 4.61
2492 2543 2.281970 GTTTGGTCGGTCCCCACC 60.282 66.667 0.00 0.00 39.69 4.61
2500 2551 3.698820 GGTCCCCACCGCGTTACT 61.699 66.667 4.92 0.00 31.06 2.24
2501 2552 2.125793 GTCCCCACCGCGTTACTC 60.126 66.667 4.92 0.00 0.00 2.59
2502 2553 2.283388 TCCCCACCGCGTTACTCT 60.283 61.111 4.92 0.00 0.00 3.24
2503 2554 2.183555 CCCCACCGCGTTACTCTC 59.816 66.667 4.92 0.00 0.00 3.20
2504 2555 2.348888 CCCCACCGCGTTACTCTCT 61.349 63.158 4.92 0.00 0.00 3.10
2505 2556 1.139095 CCCACCGCGTTACTCTCTC 59.861 63.158 4.92 0.00 0.00 3.20
2506 2557 1.313812 CCCACCGCGTTACTCTCTCT 61.314 60.000 4.92 0.00 0.00 3.10
2507 2558 0.099082 CCACCGCGTTACTCTCTCTC 59.901 60.000 4.92 0.00 0.00 3.20
2508 2559 1.088306 CACCGCGTTACTCTCTCTCT 58.912 55.000 4.92 0.00 0.00 3.10
2509 2560 1.062880 CACCGCGTTACTCTCTCTCTC 59.937 57.143 4.92 0.00 0.00 3.20
2510 2561 1.065998 ACCGCGTTACTCTCTCTCTCT 60.066 52.381 4.92 0.00 0.00 3.10
2511 2562 1.595794 CCGCGTTACTCTCTCTCTCTC 59.404 57.143 4.92 0.00 0.00 3.20
2512 2563 2.546778 CGCGTTACTCTCTCTCTCTCT 58.453 52.381 0.00 0.00 0.00 3.10
2513 2564 2.538449 CGCGTTACTCTCTCTCTCTCTC 59.462 54.545 0.00 0.00 0.00 3.20
2514 2565 3.737047 CGCGTTACTCTCTCTCTCTCTCT 60.737 52.174 0.00 0.00 0.00 3.10
2515 2566 3.555956 GCGTTACTCTCTCTCTCTCTCTG 59.444 52.174 0.00 0.00 0.00 3.35
2516 2567 4.755411 CGTTACTCTCTCTCTCTCTCTGT 58.245 47.826 0.00 0.00 0.00 3.41
2517 2568 5.680408 GCGTTACTCTCTCTCTCTCTCTGTA 60.680 48.000 0.00 0.00 0.00 2.74
2518 2569 5.977725 CGTTACTCTCTCTCTCTCTCTGTAG 59.022 48.000 0.00 0.00 0.00 2.74
2519 2570 4.408182 ACTCTCTCTCTCTCTCTGTAGC 57.592 50.000 0.00 0.00 0.00 3.58
2520 2571 3.774766 ACTCTCTCTCTCTCTCTGTAGCA 59.225 47.826 0.00 0.00 0.00 3.49
2521 2572 4.410228 ACTCTCTCTCTCTCTCTGTAGCAT 59.590 45.833 0.00 0.00 0.00 3.79
2522 2573 4.960938 TCTCTCTCTCTCTCTGTAGCATC 58.039 47.826 0.00 0.00 0.00 3.91
2523 2574 4.067896 CTCTCTCTCTCTCTGTAGCATCC 58.932 52.174 0.00 0.00 0.00 3.51
2524 2575 2.807967 CTCTCTCTCTCTGTAGCATCCG 59.192 54.545 0.00 0.00 0.00 4.18
2525 2576 2.171659 TCTCTCTCTCTGTAGCATCCGT 59.828 50.000 0.00 0.00 0.00 4.69
2526 2577 2.948979 CTCTCTCTCTGTAGCATCCGTT 59.051 50.000 0.00 0.00 0.00 4.44
2527 2578 3.357203 TCTCTCTCTGTAGCATCCGTTT 58.643 45.455 0.00 0.00 0.00 3.60
2528 2579 3.129462 TCTCTCTCTGTAGCATCCGTTTG 59.871 47.826 0.00 0.00 0.00 2.93
2529 2580 1.929836 CTCTCTGTAGCATCCGTTTGC 59.070 52.381 0.00 0.00 43.09 3.68
2530 2581 1.009829 CTCTGTAGCATCCGTTTGCC 58.990 55.000 3.45 0.00 43.83 4.52
2531 2582 0.392461 TCTGTAGCATCCGTTTGCCC 60.392 55.000 3.45 0.00 43.83 5.36
2532 2583 0.676466 CTGTAGCATCCGTTTGCCCA 60.676 55.000 3.45 1.20 43.83 5.36
2533 2584 0.034574 TGTAGCATCCGTTTGCCCAT 60.035 50.000 3.45 0.00 43.83 4.00
2534 2585 1.102978 GTAGCATCCGTTTGCCCATT 58.897 50.000 3.45 0.00 43.83 3.16
2535 2586 1.476488 GTAGCATCCGTTTGCCCATTT 59.524 47.619 3.45 0.00 43.83 2.32
2536 2587 0.247185 AGCATCCGTTTGCCCATTTG 59.753 50.000 3.45 0.00 43.83 2.32
2537 2588 0.740516 GCATCCGTTTGCCCATTTGG 60.741 55.000 0.00 0.00 36.60 3.28
2538 2589 0.607620 CATCCGTTTGCCCATTTGGT 59.392 50.000 0.00 0.00 36.04 3.67
2539 2590 0.894835 ATCCGTTTGCCCATTTGGTC 59.105 50.000 0.00 0.00 36.04 4.02
2540 2591 0.178975 TCCGTTTGCCCATTTGGTCT 60.179 50.000 0.00 0.00 36.04 3.85
2541 2592 0.678950 CCGTTTGCCCATTTGGTCTT 59.321 50.000 0.00 0.00 36.04 3.01
2542 2593 1.069978 CCGTTTGCCCATTTGGTCTTT 59.930 47.619 0.00 0.00 36.04 2.52
2543 2594 2.484594 CCGTTTGCCCATTTGGTCTTTT 60.485 45.455 0.00 0.00 36.04 2.27
2544 2595 2.543430 CGTTTGCCCATTTGGTCTTTTG 59.457 45.455 0.00 0.00 36.04 2.44
2545 2596 2.877786 GTTTGCCCATTTGGTCTTTTGG 59.122 45.455 0.00 0.00 36.04 3.28
2546 2597 2.094100 TGCCCATTTGGTCTTTTGGA 57.906 45.000 0.00 0.00 36.04 3.53
2547 2598 1.691434 TGCCCATTTGGTCTTTTGGAC 59.309 47.619 0.00 0.00 43.79 4.02
2548 2599 1.970640 GCCCATTTGGTCTTTTGGACT 59.029 47.619 0.00 0.00 43.97 3.85
2549 2600 2.029020 GCCCATTTGGTCTTTTGGACTC 60.029 50.000 0.00 0.00 43.97 3.36
2550 2601 3.230134 CCCATTTGGTCTTTTGGACTCA 58.770 45.455 0.00 0.00 43.97 3.41
2551 2602 3.640967 CCCATTTGGTCTTTTGGACTCAA 59.359 43.478 0.00 0.00 43.97 3.02
2552 2603 4.100808 CCCATTTGGTCTTTTGGACTCAAA 59.899 41.667 11.56 11.56 42.83 2.69
2553 2604 5.396213 CCCATTTGGTCTTTTGGACTCAAAA 60.396 40.000 12.50 4.55 46.81 2.44
2576 2627 8.472007 AAAAAGAAAAAGTTTTCCCTTTTGGT 57.528 26.923 25.58 16.49 45.84 3.67
2577 2628 7.681939 AAAGAAAAAGTTTTCCCTTTTGGTC 57.318 32.000 16.57 3.86 45.84 4.02
2578 2629 6.367374 AGAAAAAGTTTTCCCTTTTGGTCA 57.633 33.333 11.90 0.00 45.84 4.02
2579 2630 6.170506 AGAAAAAGTTTTCCCTTTTGGTCAC 58.829 36.000 11.90 0.00 45.84 3.67
2580 2631 4.481368 AAAGTTTTCCCTTTTGGTCACC 57.519 40.909 0.00 0.00 38.10 4.02
2581 2632 2.394632 AGTTTTCCCTTTTGGTCACCC 58.605 47.619 0.00 0.00 38.10 4.61
2582 2633 1.414919 GTTTTCCCTTTTGGTCACCCC 59.585 52.381 0.00 0.00 38.10 4.95
2583 2634 0.938192 TTTCCCTTTTGGTCACCCCT 59.062 50.000 0.00 0.00 38.10 4.79
2584 2635 0.938192 TTCCCTTTTGGTCACCCCTT 59.062 50.000 0.00 0.00 38.10 3.95
2585 2636 0.938192 TCCCTTTTGGTCACCCCTTT 59.062 50.000 0.00 0.00 38.10 3.11
2586 2637 1.292546 TCCCTTTTGGTCACCCCTTTT 59.707 47.619 0.00 0.00 38.10 2.27
2587 2638 1.416030 CCCTTTTGGTCACCCCTTTTG 59.584 52.381 0.00 0.00 38.10 2.44
2588 2639 2.393646 CCTTTTGGTCACCCCTTTTGA 58.606 47.619 0.00 0.00 34.07 2.69
2589 2640 2.102420 CCTTTTGGTCACCCCTTTTGAC 59.898 50.000 0.00 0.00 42.35 3.18
2590 2641 2.838637 TTTGGTCACCCCTTTTGACT 57.161 45.000 0.00 0.00 42.63 3.41
2591 2642 2.838637 TTGGTCACCCCTTTTGACTT 57.161 45.000 0.00 0.00 42.63 3.01
2592 2643 2.358322 TGGTCACCCCTTTTGACTTC 57.642 50.000 0.00 0.00 42.63 3.01
2593 2644 1.850345 TGGTCACCCCTTTTGACTTCT 59.150 47.619 0.00 0.00 42.63 2.85
2594 2645 2.243736 TGGTCACCCCTTTTGACTTCTT 59.756 45.455 0.00 0.00 42.63 2.52
2595 2646 2.885266 GGTCACCCCTTTTGACTTCTTC 59.115 50.000 2.73 0.00 42.63 2.87
2596 2647 2.885266 GTCACCCCTTTTGACTTCTTCC 59.115 50.000 0.00 0.00 40.30 3.46
2597 2648 2.783510 TCACCCCTTTTGACTTCTTCCT 59.216 45.455 0.00 0.00 0.00 3.36
2598 2649 3.977999 TCACCCCTTTTGACTTCTTCCTA 59.022 43.478 0.00 0.00 0.00 2.94
2599 2650 4.601857 TCACCCCTTTTGACTTCTTCCTAT 59.398 41.667 0.00 0.00 0.00 2.57
2600 2651 5.074515 TCACCCCTTTTGACTTCTTCCTATT 59.925 40.000 0.00 0.00 0.00 1.73
2601 2652 5.775195 CACCCCTTTTGACTTCTTCCTATTT 59.225 40.000 0.00 0.00 0.00 1.40
2602 2653 6.267699 CACCCCTTTTGACTTCTTCCTATTTT 59.732 38.462 0.00 0.00 0.00 1.82
2603 2654 6.493802 ACCCCTTTTGACTTCTTCCTATTTTC 59.506 38.462 0.00 0.00 0.00 2.29
2604 2655 6.721668 CCCCTTTTGACTTCTTCCTATTTTCT 59.278 38.462 0.00 0.00 0.00 2.52
2605 2656 7.888546 CCCCTTTTGACTTCTTCCTATTTTCTA 59.111 37.037 0.00 0.00 0.00 2.10
2606 2657 9.297037 CCCTTTTGACTTCTTCCTATTTTCTAA 57.703 33.333 0.00 0.00 0.00 2.10
2612 2663 9.503399 TGACTTCTTCCTATTTTCTAAAACTCC 57.497 33.333 0.00 0.00 0.00 3.85
2613 2664 8.549338 ACTTCTTCCTATTTTCTAAAACTCCG 57.451 34.615 0.00 0.00 0.00 4.63
2614 2665 6.980051 TCTTCCTATTTTCTAAAACTCCGC 57.020 37.500 0.00 0.00 0.00 5.54
2615 2666 6.708285 TCTTCCTATTTTCTAAAACTCCGCT 58.292 36.000 0.00 0.00 0.00 5.52
2616 2667 6.594159 TCTTCCTATTTTCTAAAACTCCGCTG 59.406 38.462 0.00 0.00 0.00 5.18
2617 2668 5.183228 TCCTATTTTCTAAAACTCCGCTGG 58.817 41.667 0.00 0.00 0.00 4.85
2618 2669 3.850122 ATTTTCTAAAACTCCGCTGGC 57.150 42.857 0.00 0.00 0.00 4.85
2619 2670 2.561478 TTTCTAAAACTCCGCTGGCT 57.439 45.000 0.00 0.00 0.00 4.75
2620 2671 2.561478 TTCTAAAACTCCGCTGGCTT 57.439 45.000 0.00 0.00 0.00 4.35
2621 2672 3.688694 TTCTAAAACTCCGCTGGCTTA 57.311 42.857 0.00 0.00 0.00 3.09
2622 2673 3.906720 TCTAAAACTCCGCTGGCTTAT 57.093 42.857 0.00 0.00 0.00 1.73
2623 2674 4.216411 TCTAAAACTCCGCTGGCTTATT 57.784 40.909 0.00 0.00 0.00 1.40
2624 2675 5.347620 TCTAAAACTCCGCTGGCTTATTA 57.652 39.130 0.00 0.00 0.00 0.98
2625 2676 5.736813 TCTAAAACTCCGCTGGCTTATTAA 58.263 37.500 0.00 0.00 0.00 1.40
2626 2677 6.354130 TCTAAAACTCCGCTGGCTTATTAAT 58.646 36.000 0.00 0.00 0.00 1.40
2627 2678 5.914898 AAAACTCCGCTGGCTTATTAATT 57.085 34.783 0.00 0.00 0.00 1.40
2628 2679 5.914898 AAACTCCGCTGGCTTATTAATTT 57.085 34.783 0.00 0.00 0.00 1.82
2629 2680 5.500645 AACTCCGCTGGCTTATTAATTTC 57.499 39.130 0.00 0.00 0.00 2.17
2630 2681 4.523083 ACTCCGCTGGCTTATTAATTTCA 58.477 39.130 0.00 0.00 0.00 2.69
2631 2682 4.947388 ACTCCGCTGGCTTATTAATTTCAA 59.053 37.500 0.00 0.00 0.00 2.69
2632 2683 5.594317 ACTCCGCTGGCTTATTAATTTCAAT 59.406 36.000 0.00 0.00 0.00 2.57
2633 2684 5.830912 TCCGCTGGCTTATTAATTTCAATG 58.169 37.500 0.00 0.00 0.00 2.82
2634 2685 4.984161 CCGCTGGCTTATTAATTTCAATGG 59.016 41.667 0.00 0.00 0.00 3.16
2635 2686 5.451798 CCGCTGGCTTATTAATTTCAATGGT 60.452 40.000 0.00 0.00 0.00 3.55
2636 2687 5.687285 CGCTGGCTTATTAATTTCAATGGTC 59.313 40.000 0.00 0.00 0.00 4.02
2637 2688 5.985530 GCTGGCTTATTAATTTCAATGGTCC 59.014 40.000 0.00 0.00 0.00 4.46
2638 2689 6.183360 GCTGGCTTATTAATTTCAATGGTCCT 60.183 38.462 0.00 0.00 0.00 3.85
2639 2690 7.346751 TGGCTTATTAATTTCAATGGTCCTC 57.653 36.000 0.00 0.00 0.00 3.71
2640 2691 6.323739 TGGCTTATTAATTTCAATGGTCCTCC 59.676 38.462 0.00 0.00 0.00 4.30
2641 2692 6.438763 GCTTATTAATTTCAATGGTCCTCCG 58.561 40.000 0.00 0.00 36.30 4.63
2642 2693 4.918810 ATTAATTTCAATGGTCCTCCGC 57.081 40.909 0.00 0.00 36.30 5.54
2643 2694 2.214376 AATTTCAATGGTCCTCCGCA 57.786 45.000 0.00 0.00 36.30 5.69
2644 2695 2.214376 ATTTCAATGGTCCTCCGCAA 57.786 45.000 0.00 0.00 36.30 4.85
2645 2696 1.533625 TTTCAATGGTCCTCCGCAAG 58.466 50.000 0.00 0.00 36.30 4.01
2646 2697 0.690192 TTCAATGGTCCTCCGCAAGA 59.310 50.000 0.00 0.00 43.02 3.02
2647 2698 0.690192 TCAATGGTCCTCCGCAAGAA 59.310 50.000 0.00 0.00 43.02 2.52
2648 2699 1.089920 CAATGGTCCTCCGCAAGAAG 58.910 55.000 0.00 0.00 43.02 2.85
2649 2700 0.693049 AATGGTCCTCCGCAAGAAGT 59.307 50.000 0.00 0.00 43.02 3.01
2650 2701 0.250513 ATGGTCCTCCGCAAGAAGTC 59.749 55.000 0.00 0.00 43.02 3.01
2651 2702 1.118965 TGGTCCTCCGCAAGAAGTCA 61.119 55.000 0.00 0.00 43.02 3.41
2652 2703 0.034896 GGTCCTCCGCAAGAAGTCAA 59.965 55.000 0.00 0.00 43.02 3.18
2653 2704 1.542547 GGTCCTCCGCAAGAAGTCAAA 60.543 52.381 0.00 0.00 43.02 2.69
2654 2705 1.801178 GTCCTCCGCAAGAAGTCAAAG 59.199 52.381 0.00 0.00 43.02 2.77
2655 2706 1.416401 TCCTCCGCAAGAAGTCAAAGT 59.584 47.619 0.00 0.00 43.02 2.66
2656 2707 2.158813 TCCTCCGCAAGAAGTCAAAGTT 60.159 45.455 0.00 0.00 43.02 2.66
2657 2708 2.618709 CCTCCGCAAGAAGTCAAAGTTT 59.381 45.455 0.00 0.00 43.02 2.66
2658 2709 3.548818 CCTCCGCAAGAAGTCAAAGTTTG 60.549 47.826 9.44 9.44 43.02 2.93
2659 2710 2.119457 CCGCAAGAAGTCAAAGTTTGC 58.881 47.619 10.90 6.35 40.40 3.68
2660 2711 2.479389 CCGCAAGAAGTCAAAGTTTGCA 60.479 45.455 10.90 0.00 43.10 4.08
2661 2712 3.178267 CGCAAGAAGTCAAAGTTTGCAA 58.822 40.909 10.90 0.00 43.10 4.08
2662 2713 3.000773 CGCAAGAAGTCAAAGTTTGCAAC 60.001 43.478 10.90 5.11 43.10 4.17
2663 2714 3.306973 GCAAGAAGTCAAAGTTTGCAACC 59.693 43.478 10.90 0.00 42.63 3.77
2664 2715 4.747810 CAAGAAGTCAAAGTTTGCAACCT 58.252 39.130 10.90 0.00 0.00 3.50
2665 2716 5.678616 GCAAGAAGTCAAAGTTTGCAACCTA 60.679 40.000 10.90 0.00 42.63 3.08
2666 2717 5.500645 AGAAGTCAAAGTTTGCAACCTAC 57.499 39.130 10.90 2.98 0.00 3.18
2667 2718 5.193679 AGAAGTCAAAGTTTGCAACCTACT 58.806 37.500 10.90 5.26 0.00 2.57
2668 2719 5.297029 AGAAGTCAAAGTTTGCAACCTACTC 59.703 40.000 10.90 3.45 0.00 2.59
2669 2720 4.781934 AGTCAAAGTTTGCAACCTACTCT 58.218 39.130 10.90 0.00 0.00 3.24
2670 2721 5.193679 AGTCAAAGTTTGCAACCTACTCTT 58.806 37.500 10.90 0.00 0.00 2.85
2671 2722 5.066505 AGTCAAAGTTTGCAACCTACTCTTG 59.933 40.000 10.90 8.15 0.00 3.02
2672 2723 4.338118 TCAAAGTTTGCAACCTACTCTTGG 59.662 41.667 10.90 0.00 0.00 3.61
2673 2724 3.857157 AGTTTGCAACCTACTCTTGGA 57.143 42.857 0.00 0.00 0.00 3.53
2674 2725 3.477530 AGTTTGCAACCTACTCTTGGAC 58.522 45.455 0.00 0.00 0.00 4.02
2675 2726 2.163818 TTGCAACCTACTCTTGGACG 57.836 50.000 0.00 0.00 0.00 4.79
2676 2727 0.320374 TGCAACCTACTCTTGGACGG 59.680 55.000 0.00 0.00 0.00 4.79
2677 2728 0.606604 GCAACCTACTCTTGGACGGA 59.393 55.000 0.00 0.00 0.00 4.69
2678 2729 1.404315 GCAACCTACTCTTGGACGGAG 60.404 57.143 0.00 0.00 36.92 4.63
2679 2730 1.204941 CAACCTACTCTTGGACGGAGG 59.795 57.143 0.00 0.00 35.34 4.30
2680 2731 0.324460 ACCTACTCTTGGACGGAGGG 60.324 60.000 0.00 0.00 35.34 4.30
2681 2732 0.033405 CCTACTCTTGGACGGAGGGA 60.033 60.000 0.00 0.00 35.34 4.20
2682 2733 1.394618 CTACTCTTGGACGGAGGGAG 58.605 60.000 0.00 0.00 35.34 4.30
2683 2734 0.702902 TACTCTTGGACGGAGGGAGT 59.297 55.000 0.00 0.00 39.95 3.85
2684 2735 0.702902 ACTCTTGGACGGAGGGAGTA 59.297 55.000 0.00 0.00 35.79 2.59
2685 2736 1.341187 ACTCTTGGACGGAGGGAGTAG 60.341 57.143 0.00 0.00 35.79 2.57
2686 2737 0.683504 TCTTGGACGGAGGGAGTAGC 60.684 60.000 0.00 0.00 0.00 3.58
2687 2738 0.684805 CTTGGACGGAGGGAGTAGCT 60.685 60.000 0.00 0.00 0.00 3.32
2688 2739 0.252103 TTGGACGGAGGGAGTAGCTT 60.252 55.000 0.00 0.00 0.00 3.74
2689 2740 0.252103 TGGACGGAGGGAGTAGCTTT 60.252 55.000 0.00 0.00 0.00 3.51
2690 2741 0.903236 GGACGGAGGGAGTAGCTTTT 59.097 55.000 0.00 0.00 0.00 2.27
2691 2742 2.105766 GGACGGAGGGAGTAGCTTTTA 58.894 52.381 0.00 0.00 0.00 1.52
2692 2743 2.498885 GGACGGAGGGAGTAGCTTTTAA 59.501 50.000 0.00 0.00 0.00 1.52
2693 2744 3.055602 GGACGGAGGGAGTAGCTTTTAAA 60.056 47.826 0.00 0.00 0.00 1.52
2694 2745 4.383880 GGACGGAGGGAGTAGCTTTTAAAT 60.384 45.833 0.00 0.00 0.00 1.40
2695 2746 5.175388 ACGGAGGGAGTAGCTTTTAAATT 57.825 39.130 0.00 0.00 0.00 1.82
2696 2747 5.183969 ACGGAGGGAGTAGCTTTTAAATTC 58.816 41.667 0.00 0.00 0.00 2.17
2697 2748 4.575236 CGGAGGGAGTAGCTTTTAAATTCC 59.425 45.833 0.00 0.00 0.00 3.01
2698 2749 5.506708 GGAGGGAGTAGCTTTTAAATTCCA 58.493 41.667 0.00 0.00 0.00 3.53
2699 2750 5.590663 GGAGGGAGTAGCTTTTAAATTCCAG 59.409 44.000 0.00 0.00 0.00 3.86
2700 2751 6.140968 AGGGAGTAGCTTTTAAATTCCAGT 57.859 37.500 0.00 0.00 0.00 4.00
2701 2752 6.552932 AGGGAGTAGCTTTTAAATTCCAGTT 58.447 36.000 0.00 0.00 0.00 3.16
2702 2753 7.696017 AGGGAGTAGCTTTTAAATTCCAGTTA 58.304 34.615 0.00 0.00 0.00 2.24
2703 2754 8.336987 AGGGAGTAGCTTTTAAATTCCAGTTAT 58.663 33.333 0.00 0.00 0.00 1.89
2704 2755 8.967918 GGGAGTAGCTTTTAAATTCCAGTTATT 58.032 33.333 0.00 0.00 0.00 1.40
2750 2801 8.815565 TTATTAACCAAACATATTCTCCTGCA 57.184 30.769 0.00 0.00 0.00 4.41
2751 2802 7.716799 ATTAACCAAACATATTCTCCTGCAA 57.283 32.000 0.00 0.00 0.00 4.08
2752 2803 7.716799 TTAACCAAACATATTCTCCTGCAAT 57.283 32.000 0.00 0.00 0.00 3.56
2753 2804 6.610075 AACCAAACATATTCTCCTGCAATT 57.390 33.333 0.00 0.00 0.00 2.32
2754 2805 6.610075 ACCAAACATATTCTCCTGCAATTT 57.390 33.333 0.00 0.00 0.00 1.82
2755 2806 7.008021 ACCAAACATATTCTCCTGCAATTTT 57.992 32.000 0.00 0.00 0.00 1.82
2756 2807 7.099120 ACCAAACATATTCTCCTGCAATTTTC 58.901 34.615 0.00 0.00 0.00 2.29
2757 2808 6.254157 CCAAACATATTCTCCTGCAATTTTCG 59.746 38.462 0.00 0.00 0.00 3.46
2758 2809 6.515272 AACATATTCTCCTGCAATTTTCGT 57.485 33.333 0.00 0.00 0.00 3.85
2759 2810 6.515272 ACATATTCTCCTGCAATTTTCGTT 57.485 33.333 0.00 0.00 0.00 3.85
2760 2811 7.624360 ACATATTCTCCTGCAATTTTCGTTA 57.376 32.000 0.00 0.00 0.00 3.18
2761 2812 7.472543 ACATATTCTCCTGCAATTTTCGTTAC 58.527 34.615 0.00 0.00 0.00 2.50
2762 2813 7.336931 ACATATTCTCCTGCAATTTTCGTTACT 59.663 33.333 0.00 0.00 0.00 2.24
2763 2814 6.575162 ATTCTCCTGCAATTTTCGTTACTT 57.425 33.333 0.00 0.00 0.00 2.24
2764 2815 7.681939 ATTCTCCTGCAATTTTCGTTACTTA 57.318 32.000 0.00 0.00 0.00 2.24
2765 2816 7.499321 TTCTCCTGCAATTTTCGTTACTTAA 57.501 32.000 0.00 0.00 0.00 1.85
2766 2817 7.499321 TCTCCTGCAATTTTCGTTACTTAAA 57.501 32.000 0.00 0.00 0.00 1.52
2767 2818 8.106247 TCTCCTGCAATTTTCGTTACTTAAAT 57.894 30.769 0.00 0.00 0.00 1.40
2768 2819 9.221933 TCTCCTGCAATTTTCGTTACTTAAATA 57.778 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
449 469 0.316841 AACCGATGCCGCACAAAATT 59.683 45.000 0.00 0.00 0.00 1.82
484 504 4.473444 TGCTCTCCTTGGTTTTCTTTGAT 58.527 39.130 0.00 0.00 0.00 2.57
625 645 4.658901 AGGGAATACGGTCAGTATCCAAAT 59.341 41.667 0.00 0.00 44.78 2.32
951 971 3.192944 AGGATCTGATCTTGGGGAAACA 58.807 45.455 16.61 0.00 0.00 2.83
1006 1026 0.512952 GAAAGAGTGCGTGCGACAAT 59.487 50.000 0.00 0.00 0.00 2.71
1007 1027 1.495584 GGAAAGAGTGCGTGCGACAA 61.496 55.000 0.00 0.00 0.00 3.18
1070 1090 1.138859 TGCGAGAGAGAGAGAGAGAGG 59.861 57.143 0.00 0.00 0.00 3.69
1109 1157 7.328249 CGCAACTCATGGTTAAACATATGTTTT 59.672 33.333 32.58 19.35 46.22 2.43
1199 1248 4.079787 ACCAGCACCATGGAAATAGTACAT 60.080 41.667 21.47 0.00 43.57 2.29
1216 1265 3.886505 ACTTATTTTCCGTTTCACCAGCA 59.113 39.130 0.00 0.00 0.00 4.41
1230 1279 5.965334 CGACATAATGCTTGCGACTTATTTT 59.035 36.000 0.00 0.00 0.00 1.82
1558 1609 5.509972 TCATCGTGCGCAACATATTAAAAAC 59.490 36.000 14.00 0.00 0.00 2.43
1744 1795 3.181526 GCACTTAGGCTTGCCATCT 57.818 52.632 14.54 0.00 32.21 2.90
1927 1978 3.814005 ACGACCCATAGATTGGTACAC 57.186 47.619 0.00 0.00 44.83 2.90
1932 1983 2.643551 AGCAAACGACCCATAGATTGG 58.356 47.619 0.00 0.00 46.00 3.16
1942 1993 3.544615 GGTTGACAAGCAAACGACC 57.455 52.632 12.42 0.00 38.44 4.79
1958 2009 8.758829 TCTATAAGATGTGTGACAAAGTATGGT 58.241 33.333 0.00 0.00 0.00 3.55
1969 2020 8.147704 TGTCAAACTTGTCTATAAGATGTGTGA 58.852 33.333 0.00 0.00 0.00 3.58
1990 2041 5.801531 ATAGTATCCATACCGCTTGTCAA 57.198 39.130 0.00 0.00 33.79 3.18
2016 2067 9.693739 TCCCAGCATTAATAGTAAAATCTGAAA 57.306 29.630 9.51 0.00 0.00 2.69
2017 2068 9.866655 ATCCCAGCATTAATAGTAAAATCTGAA 57.133 29.630 9.51 1.82 0.00 3.02
2018 2069 9.507329 GATCCCAGCATTAATAGTAAAATCTGA 57.493 33.333 9.51 0.00 0.00 3.27
2019 2070 9.288576 TGATCCCAGCATTAATAGTAAAATCTG 57.711 33.333 0.00 0.00 0.00 2.90
2026 2077 9.326489 ACTCTTATGATCCCAGCATTAATAGTA 57.674 33.333 0.00 0.00 0.00 1.82
2027 2078 8.212259 ACTCTTATGATCCCAGCATTAATAGT 57.788 34.615 0.00 0.00 0.00 2.12
2028 2079 8.316946 TGACTCTTATGATCCCAGCATTAATAG 58.683 37.037 0.00 0.00 0.00 1.73
2029 2080 8.206126 TGACTCTTATGATCCCAGCATTAATA 57.794 34.615 0.00 0.00 0.00 0.98
2030 2081 7.083062 TGACTCTTATGATCCCAGCATTAAT 57.917 36.000 0.00 0.00 0.00 1.40
2031 2082 6.499106 TGACTCTTATGATCCCAGCATTAA 57.501 37.500 0.00 0.00 0.00 1.40
2032 2083 6.499106 TTGACTCTTATGATCCCAGCATTA 57.501 37.500 0.00 0.00 0.00 1.90
2033 2084 5.378230 TTGACTCTTATGATCCCAGCATT 57.622 39.130 0.00 0.00 0.00 3.56
2034 2085 5.104193 AGTTTGACTCTTATGATCCCAGCAT 60.104 40.000 0.00 0.00 0.00 3.79
2035 2086 4.225942 AGTTTGACTCTTATGATCCCAGCA 59.774 41.667 0.00 0.00 0.00 4.41
2036 2087 4.775236 AGTTTGACTCTTATGATCCCAGC 58.225 43.478 0.00 0.00 0.00 4.85
2037 2088 5.982356 TGAGTTTGACTCTTATGATCCCAG 58.018 41.667 9.27 0.00 45.27 4.45
2038 2089 5.721480 TCTGAGTTTGACTCTTATGATCCCA 59.279 40.000 9.27 0.00 45.27 4.37
2039 2090 6.227298 TCTGAGTTTGACTCTTATGATCCC 57.773 41.667 9.27 0.00 45.27 3.85
2040 2091 6.705381 CCATCTGAGTTTGACTCTTATGATCC 59.295 42.308 17.23 0.00 45.27 3.36
2041 2092 6.705381 CCCATCTGAGTTTGACTCTTATGATC 59.295 42.308 17.23 0.00 45.27 2.92
2042 2093 6.385176 TCCCATCTGAGTTTGACTCTTATGAT 59.615 38.462 17.23 10.26 45.27 2.45
2043 2094 5.721480 TCCCATCTGAGTTTGACTCTTATGA 59.279 40.000 17.23 8.99 45.27 2.15
2044 2095 5.982356 TCCCATCTGAGTTTGACTCTTATG 58.018 41.667 9.27 11.11 45.27 1.90
2045 2096 6.214412 AGTTCCCATCTGAGTTTGACTCTTAT 59.786 38.462 9.27 1.05 45.27 1.73
2046 2097 5.544176 AGTTCCCATCTGAGTTTGACTCTTA 59.456 40.000 9.27 0.00 45.27 2.10
2047 2098 4.349342 AGTTCCCATCTGAGTTTGACTCTT 59.651 41.667 9.27 0.00 45.27 2.85
2048 2099 3.906846 AGTTCCCATCTGAGTTTGACTCT 59.093 43.478 9.27 0.00 45.27 3.24
2049 2100 4.278975 AGTTCCCATCTGAGTTTGACTC 57.721 45.455 1.21 1.21 45.26 3.36
2050 2101 4.713792 AAGTTCCCATCTGAGTTTGACT 57.286 40.909 0.00 0.00 0.00 3.41
2051 2102 4.216472 GGAAAGTTCCCATCTGAGTTTGAC 59.784 45.833 0.00 0.00 41.62 3.18
2052 2103 4.398319 GGAAAGTTCCCATCTGAGTTTGA 58.602 43.478 0.00 0.00 41.62 2.69
2053 2104 4.773323 GGAAAGTTCCCATCTGAGTTTG 57.227 45.455 0.00 0.00 41.62 2.93
2084 2135 4.989797 GTGCATGTGGTTTTCATTCATGAA 59.010 37.500 11.26 11.26 44.42 2.57
2085 2136 4.038883 TGTGCATGTGGTTTTCATTCATGA 59.961 37.500 7.49 0.00 38.35 3.07
2086 2137 4.308265 TGTGCATGTGGTTTTCATTCATG 58.692 39.130 0.00 0.00 38.87 3.07
2087 2138 4.603989 TGTGCATGTGGTTTTCATTCAT 57.396 36.364 0.00 0.00 0.00 2.57
2088 2139 4.603989 ATGTGCATGTGGTTTTCATTCA 57.396 36.364 0.00 0.00 0.00 2.57
2089 2140 6.919662 CCTATATGTGCATGTGGTTTTCATTC 59.080 38.462 0.00 0.00 0.00 2.67
2090 2141 6.380846 ACCTATATGTGCATGTGGTTTTCATT 59.619 34.615 0.00 0.00 0.00 2.57
2091 2142 5.893255 ACCTATATGTGCATGTGGTTTTCAT 59.107 36.000 0.00 0.00 0.00 2.57
2092 2143 5.125257 CACCTATATGTGCATGTGGTTTTCA 59.875 40.000 0.00 0.00 0.00 2.69
2093 2144 5.356751 TCACCTATATGTGCATGTGGTTTTC 59.643 40.000 3.46 0.00 36.17 2.29
2094 2145 5.260424 TCACCTATATGTGCATGTGGTTTT 58.740 37.500 3.46 0.00 36.17 2.43
2095 2146 4.854173 TCACCTATATGTGCATGTGGTTT 58.146 39.130 3.46 0.00 36.17 3.27
2096 2147 4.502105 TCACCTATATGTGCATGTGGTT 57.498 40.909 3.46 0.00 36.17 3.67
2097 2148 4.141413 ACATCACCTATATGTGCATGTGGT 60.141 41.667 17.12 0.00 36.52 4.16
2098 2149 4.392047 ACATCACCTATATGTGCATGTGG 58.608 43.478 17.12 0.00 36.52 4.17
2099 2150 6.381481 AAACATCACCTATATGTGCATGTG 57.619 37.500 17.88 10.95 37.62 3.21
2100 2151 7.340232 AGAAAAACATCACCTATATGTGCATGT 59.660 33.333 14.45 14.45 37.62 3.21
2101 2152 7.646526 CAGAAAAACATCACCTATATGTGCATG 59.353 37.037 3.46 9.83 37.62 4.06
2102 2153 7.557358 TCAGAAAAACATCACCTATATGTGCAT 59.443 33.333 3.46 0.00 37.62 3.96
2103 2154 6.883756 TCAGAAAAACATCACCTATATGTGCA 59.116 34.615 3.46 0.00 37.62 4.57
2104 2155 7.320443 TCAGAAAAACATCACCTATATGTGC 57.680 36.000 3.46 0.00 37.62 4.57
2105 2156 8.729756 TGTTCAGAAAAACATCACCTATATGTG 58.270 33.333 1.97 1.97 37.62 3.21
2106 2157 8.862325 TGTTCAGAAAAACATCACCTATATGT 57.138 30.769 0.00 0.00 39.22 2.29
2110 2161 9.480053 CAAAATGTTCAGAAAAACATCACCTAT 57.520 29.630 3.00 0.00 46.49 2.57
2111 2162 8.690884 TCAAAATGTTCAGAAAAACATCACCTA 58.309 29.630 3.00 0.00 46.49 3.08
2112 2163 7.555087 TCAAAATGTTCAGAAAAACATCACCT 58.445 30.769 3.00 0.00 46.49 4.00
2113 2164 7.769272 TCAAAATGTTCAGAAAAACATCACC 57.231 32.000 3.00 0.00 46.49 4.02
2141 2192 8.300286 TCATACAAACTCGGAAATATGCAAAAA 58.700 29.630 0.00 0.00 0.00 1.94
2142 2193 7.821652 TCATACAAACTCGGAAATATGCAAAA 58.178 30.769 0.00 0.00 0.00 2.44
2143 2194 7.384439 TCATACAAACTCGGAAATATGCAAA 57.616 32.000 0.00 0.00 0.00 3.68
2144 2195 6.993786 TCATACAAACTCGGAAATATGCAA 57.006 33.333 0.00 0.00 0.00 4.08
2145 2196 6.993786 TTCATACAAACTCGGAAATATGCA 57.006 33.333 0.00 0.00 0.00 3.96
2146 2197 8.856490 AAATTCATACAAACTCGGAAATATGC 57.144 30.769 0.00 0.00 0.00 3.14
2170 2221 6.975772 CCGTCACTTTGAAAACCTCATAAAAA 59.024 34.615 0.00 0.00 32.78 1.94
2171 2222 6.095720 ACCGTCACTTTGAAAACCTCATAAAA 59.904 34.615 0.00 0.00 32.78 1.52
2172 2223 5.591067 ACCGTCACTTTGAAAACCTCATAAA 59.409 36.000 0.00 0.00 32.78 1.40
2173 2224 5.127491 ACCGTCACTTTGAAAACCTCATAA 58.873 37.500 0.00 0.00 32.78 1.90
2174 2225 4.710324 ACCGTCACTTTGAAAACCTCATA 58.290 39.130 0.00 0.00 32.78 2.15
2175 2226 3.551846 ACCGTCACTTTGAAAACCTCAT 58.448 40.909 0.00 0.00 32.78 2.90
2176 2227 2.940410 GACCGTCACTTTGAAAACCTCA 59.060 45.455 0.00 0.00 0.00 3.86
2177 2228 2.940410 TGACCGTCACTTTGAAAACCTC 59.060 45.455 0.00 0.00 0.00 3.85
2178 2229 2.993937 TGACCGTCACTTTGAAAACCT 58.006 42.857 0.00 0.00 0.00 3.50
2179 2230 3.768468 TTGACCGTCACTTTGAAAACC 57.232 42.857 0.00 0.00 0.00 3.27
2180 2231 4.561213 CCTTTTGACCGTCACTTTGAAAAC 59.439 41.667 0.00 0.00 0.00 2.43
2181 2232 4.739195 CCTTTTGACCGTCACTTTGAAAA 58.261 39.130 0.00 0.00 0.00 2.29
2182 2233 3.428316 GCCTTTTGACCGTCACTTTGAAA 60.428 43.478 0.00 0.00 0.00 2.69
2183 2234 2.098443 GCCTTTTGACCGTCACTTTGAA 59.902 45.455 0.00 0.00 0.00 2.69
2184 2235 1.673920 GCCTTTTGACCGTCACTTTGA 59.326 47.619 0.00 0.00 0.00 2.69
2185 2236 1.403679 TGCCTTTTGACCGTCACTTTG 59.596 47.619 0.00 0.00 0.00 2.77
2186 2237 1.757682 TGCCTTTTGACCGTCACTTT 58.242 45.000 0.00 0.00 0.00 2.66
2187 2238 1.757682 TTGCCTTTTGACCGTCACTT 58.242 45.000 0.00 0.00 0.00 3.16
2188 2239 1.757682 TTTGCCTTTTGACCGTCACT 58.242 45.000 0.00 0.00 0.00 3.41
2189 2240 2.570442 TTTTGCCTTTTGACCGTCAC 57.430 45.000 0.00 0.00 0.00 3.67
2190 2241 2.690497 TGATTTTGCCTTTTGACCGTCA 59.310 40.909 0.00 0.00 0.00 4.35
2191 2242 3.363341 TGATTTTGCCTTTTGACCGTC 57.637 42.857 0.00 0.00 0.00 4.79
2192 2243 5.242838 TCTTATGATTTTGCCTTTTGACCGT 59.757 36.000 0.00 0.00 0.00 4.83
2193 2244 5.708948 TCTTATGATTTTGCCTTTTGACCG 58.291 37.500 0.00 0.00 0.00 4.79
2194 2245 6.587608 CACTCTTATGATTTTGCCTTTTGACC 59.412 38.462 0.00 0.00 0.00 4.02
2195 2246 7.370383 TCACTCTTATGATTTTGCCTTTTGAC 58.630 34.615 0.00 0.00 0.00 3.18
2196 2247 7.523293 TCACTCTTATGATTTTGCCTTTTGA 57.477 32.000 0.00 0.00 0.00 2.69
2197 2248 7.869429 ACTTCACTCTTATGATTTTGCCTTTTG 59.131 33.333 0.00 0.00 0.00 2.44
2198 2249 7.869429 CACTTCACTCTTATGATTTTGCCTTTT 59.131 33.333 0.00 0.00 0.00 2.27
2199 2250 7.373493 CACTTCACTCTTATGATTTTGCCTTT 58.627 34.615 0.00 0.00 0.00 3.11
2200 2251 6.071728 CCACTTCACTCTTATGATTTTGCCTT 60.072 38.462 0.00 0.00 0.00 4.35
2201 2252 5.416952 CCACTTCACTCTTATGATTTTGCCT 59.583 40.000 0.00 0.00 0.00 4.75
2202 2253 5.644644 CCACTTCACTCTTATGATTTTGCC 58.355 41.667 0.00 0.00 0.00 4.52
2203 2254 5.098211 GCCACTTCACTCTTATGATTTTGC 58.902 41.667 0.00 0.00 0.00 3.68
2204 2255 6.506500 AGCCACTTCACTCTTATGATTTTG 57.493 37.500 0.00 0.00 0.00 2.44
2205 2256 6.071728 CCAAGCCACTTCACTCTTATGATTTT 60.072 38.462 0.00 0.00 0.00 1.82
2206 2257 5.416952 CCAAGCCACTTCACTCTTATGATTT 59.583 40.000 0.00 0.00 0.00 2.17
2207 2258 4.946157 CCAAGCCACTTCACTCTTATGATT 59.054 41.667 0.00 0.00 0.00 2.57
2208 2259 4.521146 CCAAGCCACTTCACTCTTATGAT 58.479 43.478 0.00 0.00 0.00 2.45
2209 2260 3.307691 CCCAAGCCACTTCACTCTTATGA 60.308 47.826 0.00 0.00 0.00 2.15
2210 2261 3.012518 CCCAAGCCACTTCACTCTTATG 58.987 50.000 0.00 0.00 0.00 1.90
2211 2262 2.644798 ACCCAAGCCACTTCACTCTTAT 59.355 45.455 0.00 0.00 0.00 1.73
2212 2263 2.054799 ACCCAAGCCACTTCACTCTTA 58.945 47.619 0.00 0.00 0.00 2.10
2213 2264 0.846693 ACCCAAGCCACTTCACTCTT 59.153 50.000 0.00 0.00 0.00 2.85
2214 2265 1.625818 CTACCCAAGCCACTTCACTCT 59.374 52.381 0.00 0.00 0.00 3.24
2215 2266 1.623811 TCTACCCAAGCCACTTCACTC 59.376 52.381 0.00 0.00 0.00 3.51
2216 2267 1.729586 TCTACCCAAGCCACTTCACT 58.270 50.000 0.00 0.00 0.00 3.41
2217 2268 2.152016 GTTCTACCCAAGCCACTTCAC 58.848 52.381 0.00 0.00 0.00 3.18
2218 2269 1.771854 TGTTCTACCCAAGCCACTTCA 59.228 47.619 0.00 0.00 0.00 3.02
2219 2270 2.561478 TGTTCTACCCAAGCCACTTC 57.439 50.000 0.00 0.00 0.00 3.01
2220 2271 2.174854 ACTTGTTCTACCCAAGCCACTT 59.825 45.455 0.00 0.00 42.41 3.16
2221 2272 1.774856 ACTTGTTCTACCCAAGCCACT 59.225 47.619 0.00 0.00 42.41 4.00
2222 2273 1.880027 CACTTGTTCTACCCAAGCCAC 59.120 52.381 0.00 0.00 42.41 5.01
2223 2274 1.817740 GCACTTGTTCTACCCAAGCCA 60.818 52.381 0.00 0.00 42.41 4.75
2224 2275 0.881796 GCACTTGTTCTACCCAAGCC 59.118 55.000 0.00 0.00 42.41 4.35
2225 2276 1.897560 AGCACTTGTTCTACCCAAGC 58.102 50.000 0.00 0.00 42.41 4.01
2226 2277 4.023707 CAGAAAGCACTTGTTCTACCCAAG 60.024 45.833 0.00 0.00 43.87 3.61
2227 2278 3.882888 CAGAAAGCACTTGTTCTACCCAA 59.117 43.478 0.00 0.00 32.79 4.12
2228 2279 3.135712 TCAGAAAGCACTTGTTCTACCCA 59.864 43.478 0.00 0.00 32.79 4.51
2229 2280 3.740115 TCAGAAAGCACTTGTTCTACCC 58.260 45.455 0.00 0.00 32.79 3.69
2230 2281 5.751243 TTTCAGAAAGCACTTGTTCTACC 57.249 39.130 0.00 0.00 32.79 3.18
2231 2282 9.730420 TTAATTTTCAGAAAGCACTTGTTCTAC 57.270 29.630 0.00 0.00 32.79 2.59
2232 2283 9.950680 CTTAATTTTCAGAAAGCACTTGTTCTA 57.049 29.630 0.00 0.00 32.79 2.10
2233 2284 7.922811 CCTTAATTTTCAGAAAGCACTTGTTCT 59.077 33.333 0.00 0.00 34.37 3.01
2234 2285 7.169813 CCCTTAATTTTCAGAAAGCACTTGTTC 59.830 37.037 0.00 0.00 0.00 3.18
2235 2286 6.986231 CCCTTAATTTTCAGAAAGCACTTGTT 59.014 34.615 0.00 0.00 0.00 2.83
2236 2287 6.098266 ACCCTTAATTTTCAGAAAGCACTTGT 59.902 34.615 0.00 0.00 0.00 3.16
2237 2288 6.515832 ACCCTTAATTTTCAGAAAGCACTTG 58.484 36.000 0.00 0.00 0.00 3.16
2238 2289 6.731292 ACCCTTAATTTTCAGAAAGCACTT 57.269 33.333 0.00 0.00 0.00 3.16
2239 2290 7.833285 TTACCCTTAATTTTCAGAAAGCACT 57.167 32.000 0.00 0.00 0.00 4.40
2240 2291 8.761497 GTTTTACCCTTAATTTTCAGAAAGCAC 58.239 33.333 0.00 0.00 0.00 4.40
2241 2292 8.478877 TGTTTTACCCTTAATTTTCAGAAAGCA 58.521 29.630 0.00 0.00 0.00 3.91
2242 2293 8.880878 TGTTTTACCCTTAATTTTCAGAAAGC 57.119 30.769 0.00 0.00 0.00 3.51
2244 2295 9.602568 GGTTGTTTTACCCTTAATTTTCAGAAA 57.397 29.630 0.00 0.00 31.71 2.52
2245 2296 7.921745 CGGTTGTTTTACCCTTAATTTTCAGAA 59.078 33.333 0.00 0.00 34.56 3.02
2246 2297 7.284944 TCGGTTGTTTTACCCTTAATTTTCAGA 59.715 33.333 0.00 0.00 34.56 3.27
2247 2298 7.427214 TCGGTTGTTTTACCCTTAATTTTCAG 58.573 34.615 0.00 0.00 34.56 3.02
2248 2299 7.068470 ACTCGGTTGTTTTACCCTTAATTTTCA 59.932 33.333 0.00 0.00 34.56 2.69
2249 2300 7.380333 CACTCGGTTGTTTTACCCTTAATTTTC 59.620 37.037 0.00 0.00 34.56 2.29
2250 2301 7.068470 TCACTCGGTTGTTTTACCCTTAATTTT 59.932 33.333 0.00 0.00 34.56 1.82
2251 2302 6.546772 TCACTCGGTTGTTTTACCCTTAATTT 59.453 34.615 0.00 0.00 34.56 1.82
2252 2303 6.063404 TCACTCGGTTGTTTTACCCTTAATT 58.937 36.000 0.00 0.00 34.56 1.40
2253 2304 5.623169 TCACTCGGTTGTTTTACCCTTAAT 58.377 37.500 0.00 0.00 34.56 1.40
2254 2305 5.033589 TCACTCGGTTGTTTTACCCTTAA 57.966 39.130 0.00 0.00 34.56 1.85
2255 2306 4.344679 TCTCACTCGGTTGTTTTACCCTTA 59.655 41.667 0.00 0.00 34.56 2.69
2256 2307 3.135167 TCTCACTCGGTTGTTTTACCCTT 59.865 43.478 0.00 0.00 34.56 3.95
2257 2308 2.701951 TCTCACTCGGTTGTTTTACCCT 59.298 45.455 0.00 0.00 34.56 4.34
2258 2309 3.116079 TCTCACTCGGTTGTTTTACCC 57.884 47.619 0.00 0.00 34.56 3.69
2259 2310 5.232463 TGTATCTCACTCGGTTGTTTTACC 58.768 41.667 0.00 0.00 34.72 2.85
2260 2311 6.423001 AGTTGTATCTCACTCGGTTGTTTTAC 59.577 38.462 0.00 0.00 0.00 2.01
2261 2312 6.518493 AGTTGTATCTCACTCGGTTGTTTTA 58.482 36.000 0.00 0.00 0.00 1.52
2262 2313 5.365619 AGTTGTATCTCACTCGGTTGTTTT 58.634 37.500 0.00 0.00 0.00 2.43
2263 2314 4.957296 AGTTGTATCTCACTCGGTTGTTT 58.043 39.130 0.00 0.00 0.00 2.83
2264 2315 4.602340 AGTTGTATCTCACTCGGTTGTT 57.398 40.909 0.00 0.00 0.00 2.83
2265 2316 4.158025 CCTAGTTGTATCTCACTCGGTTGT 59.842 45.833 0.00 0.00 0.00 3.32
2266 2317 4.440250 CCCTAGTTGTATCTCACTCGGTTG 60.440 50.000 0.00 0.00 0.00 3.77
2267 2318 3.700038 CCCTAGTTGTATCTCACTCGGTT 59.300 47.826 0.00 0.00 0.00 4.44
2268 2319 3.288964 CCCTAGTTGTATCTCACTCGGT 58.711 50.000 0.00 0.00 0.00 4.69
2269 2320 2.623889 CCCCTAGTTGTATCTCACTCGG 59.376 54.545 0.00 0.00 0.00 4.63
2270 2321 2.034812 GCCCCTAGTTGTATCTCACTCG 59.965 54.545 0.00 0.00 0.00 4.18
2271 2322 3.031736 TGCCCCTAGTTGTATCTCACTC 58.968 50.000 0.00 0.00 0.00 3.51
2272 2323 3.116096 TGCCCCTAGTTGTATCTCACT 57.884 47.619 0.00 0.00 0.00 3.41
2273 2324 5.546621 TTATGCCCCTAGTTGTATCTCAC 57.453 43.478 0.00 0.00 0.00 3.51
2274 2325 6.569127 TTTTATGCCCCTAGTTGTATCTCA 57.431 37.500 0.00 0.00 0.00 3.27
2275 2326 9.569122 TTAATTTTATGCCCCTAGTTGTATCTC 57.431 33.333 0.00 0.00 0.00 2.75
2317 2368 9.451002 TCATGAATTCCATAAAATGTTTGCAAT 57.549 25.926 0.00 0.00 33.31 3.56
2318 2369 8.843885 TCATGAATTCCATAAAATGTTTGCAA 57.156 26.923 2.27 0.00 33.31 4.08
2319 2370 8.843885 TTCATGAATTCCATAAAATGTTTGCA 57.156 26.923 3.38 0.00 33.31 4.08
2393 2444 9.545105 TTGCAAAACAGATTTTCAATCAGTTAT 57.455 25.926 0.00 0.00 35.79 1.89
2394 2445 8.939201 TTGCAAAACAGATTTTCAATCAGTTA 57.061 26.923 0.00 0.00 35.79 2.24
2395 2446 7.846644 TTGCAAAACAGATTTTCAATCAGTT 57.153 28.000 0.00 2.38 35.79 3.16
2396 2447 7.846644 TTTGCAAAACAGATTTTCAATCAGT 57.153 28.000 10.02 0.00 35.79 3.41
2397 2448 8.605746 TCTTTTGCAAAACAGATTTTCAATCAG 58.394 29.630 20.46 5.38 35.79 2.90
2398 2449 8.489990 TCTTTTGCAAAACAGATTTTCAATCA 57.510 26.923 20.46 0.00 35.79 2.57
2399 2450 9.771915 TTTCTTTTGCAAAACAGATTTTCAATC 57.228 25.926 20.46 0.00 35.79 2.67
2401 2452 9.956720 TTTTTCTTTTGCAAAACAGATTTTCAA 57.043 22.222 20.46 5.81 35.79 2.69
2436 2487 6.631962 TCTGGTGTTTGTTTTATCGGTTTTT 58.368 32.000 0.00 0.00 0.00 1.94
2437 2488 6.095720 TCTCTGGTGTTTGTTTTATCGGTTTT 59.904 34.615 0.00 0.00 0.00 2.43
2438 2489 5.591067 TCTCTGGTGTTTGTTTTATCGGTTT 59.409 36.000 0.00 0.00 0.00 3.27
2439 2490 5.127491 TCTCTGGTGTTTGTTTTATCGGTT 58.873 37.500 0.00 0.00 0.00 4.44
2440 2491 4.710324 TCTCTGGTGTTTGTTTTATCGGT 58.290 39.130 0.00 0.00 0.00 4.69
2441 2492 5.449304 GTTCTCTGGTGTTTGTTTTATCGG 58.551 41.667 0.00 0.00 0.00 4.18
2442 2493 5.008217 TGGTTCTCTGGTGTTTGTTTTATCG 59.992 40.000 0.00 0.00 0.00 2.92
2443 2494 6.385649 TGGTTCTCTGGTGTTTGTTTTATC 57.614 37.500 0.00 0.00 0.00 1.75
2444 2495 5.301805 CCTGGTTCTCTGGTGTTTGTTTTAT 59.698 40.000 0.00 0.00 0.00 1.40
2445 2496 4.642885 CCTGGTTCTCTGGTGTTTGTTTTA 59.357 41.667 0.00 0.00 0.00 1.52
2446 2497 3.447229 CCTGGTTCTCTGGTGTTTGTTTT 59.553 43.478 0.00 0.00 0.00 2.43
2447 2498 3.023832 CCTGGTTCTCTGGTGTTTGTTT 58.976 45.455 0.00 0.00 0.00 2.83
2448 2499 2.654863 CCTGGTTCTCTGGTGTTTGTT 58.345 47.619 0.00 0.00 0.00 2.83
2449 2500 1.133792 CCCTGGTTCTCTGGTGTTTGT 60.134 52.381 0.00 0.00 33.14 2.83
2450 2501 1.133792 ACCCTGGTTCTCTGGTGTTTG 60.134 52.381 0.00 0.00 33.14 2.93
2451 2502 1.133792 CACCCTGGTTCTCTGGTGTTT 60.134 52.381 0.00 0.00 42.61 2.83
2452 2503 0.474184 CACCCTGGTTCTCTGGTGTT 59.526 55.000 0.00 0.00 42.61 3.32
2453 2504 2.145865 CACCCTGGTTCTCTGGTGT 58.854 57.895 0.00 0.00 42.61 4.16
2455 2506 0.694444 ACACACCCTGGTTCTCTGGT 60.694 55.000 0.00 0.00 33.14 4.00
2456 2507 0.250467 CACACACCCTGGTTCTCTGG 60.250 60.000 0.00 0.00 0.00 3.86
2457 2508 0.469917 ACACACACCCTGGTTCTCTG 59.530 55.000 0.00 0.00 0.00 3.35
2458 2509 1.213296 AACACACACCCTGGTTCTCT 58.787 50.000 0.00 0.00 0.00 3.10
2459 2510 1.676006 CAAACACACACCCTGGTTCTC 59.324 52.381 0.00 0.00 0.00 2.87
2460 2511 1.684869 CCAAACACACACCCTGGTTCT 60.685 52.381 0.00 0.00 0.00 3.01
2461 2512 0.744281 CCAAACACACACCCTGGTTC 59.256 55.000 0.00 0.00 0.00 3.62
2462 2513 0.040499 ACCAAACACACACCCTGGTT 59.960 50.000 0.00 0.00 37.05 3.67
2463 2514 0.395173 GACCAAACACACACCCTGGT 60.395 55.000 0.00 0.00 43.08 4.00
2464 2515 1.444119 CGACCAAACACACACCCTGG 61.444 60.000 0.00 0.00 0.00 4.45
2465 2516 1.444119 CCGACCAAACACACACCCTG 61.444 60.000 0.00 0.00 0.00 4.45
2466 2517 1.153046 CCGACCAAACACACACCCT 60.153 57.895 0.00 0.00 0.00 4.34
2467 2518 1.441732 GACCGACCAAACACACACCC 61.442 60.000 0.00 0.00 0.00 4.61
2468 2519 1.441732 GGACCGACCAAACACACACC 61.442 60.000 0.00 0.00 38.79 4.16
2469 2520 1.441732 GGGACCGACCAAACACACAC 61.442 60.000 0.00 0.00 41.20 3.82
2470 2521 1.153127 GGGACCGACCAAACACACA 60.153 57.895 0.00 0.00 41.20 3.72
2471 2522 1.895231 GGGGACCGACCAAACACAC 60.895 63.158 0.00 0.00 40.86 3.82
2472 2523 2.511900 GGGGACCGACCAAACACA 59.488 61.111 0.00 0.00 40.86 3.72
2484 2535 2.125793 GAGTAACGCGGTGGGGAC 60.126 66.667 7.07 0.00 0.00 4.46
2485 2536 2.283388 AGAGTAACGCGGTGGGGA 60.283 61.111 7.07 0.00 0.00 4.81
2486 2537 2.183555 GAGAGTAACGCGGTGGGG 59.816 66.667 7.07 0.00 0.00 4.96
2487 2538 1.139095 GAGAGAGTAACGCGGTGGG 59.861 63.158 7.07 0.00 0.00 4.61
2488 2539 0.099082 GAGAGAGAGTAACGCGGTGG 59.901 60.000 7.07 0.00 0.00 4.61
2489 2540 1.062880 GAGAGAGAGAGTAACGCGGTG 59.937 57.143 7.07 0.00 0.00 4.94
2490 2541 1.065998 AGAGAGAGAGAGTAACGCGGT 60.066 52.381 12.47 6.42 0.00 5.68
2491 2542 1.595794 GAGAGAGAGAGAGTAACGCGG 59.404 57.143 12.47 0.00 0.00 6.46
2492 2543 2.538449 GAGAGAGAGAGAGAGTAACGCG 59.462 54.545 3.53 3.53 0.00 6.01
2493 2544 3.555956 CAGAGAGAGAGAGAGAGTAACGC 59.444 52.174 0.00 0.00 0.00 4.84
2494 2545 4.755411 ACAGAGAGAGAGAGAGAGTAACG 58.245 47.826 0.00 0.00 0.00 3.18
2495 2546 5.753921 GCTACAGAGAGAGAGAGAGAGTAAC 59.246 48.000 0.00 0.00 0.00 2.50
2496 2547 5.423931 TGCTACAGAGAGAGAGAGAGAGTAA 59.576 44.000 0.00 0.00 0.00 2.24
2497 2548 4.959839 TGCTACAGAGAGAGAGAGAGAGTA 59.040 45.833 0.00 0.00 0.00 2.59
2498 2549 3.774766 TGCTACAGAGAGAGAGAGAGAGT 59.225 47.826 0.00 0.00 0.00 3.24
2499 2550 4.406648 TGCTACAGAGAGAGAGAGAGAG 57.593 50.000 0.00 0.00 0.00 3.20
2500 2551 4.202357 GGATGCTACAGAGAGAGAGAGAGA 60.202 50.000 0.00 0.00 0.00 3.10
2501 2552 4.067896 GGATGCTACAGAGAGAGAGAGAG 58.932 52.174 0.00 0.00 0.00 3.20
2502 2553 3.494223 CGGATGCTACAGAGAGAGAGAGA 60.494 52.174 0.00 0.00 0.00 3.10
2503 2554 2.807967 CGGATGCTACAGAGAGAGAGAG 59.192 54.545 0.00 0.00 0.00 3.20
2504 2555 2.171659 ACGGATGCTACAGAGAGAGAGA 59.828 50.000 0.00 0.00 0.00 3.10
2505 2556 2.571212 ACGGATGCTACAGAGAGAGAG 58.429 52.381 0.00 0.00 0.00 3.20
2506 2557 2.719531 ACGGATGCTACAGAGAGAGA 57.280 50.000 0.00 0.00 0.00 3.10
2507 2558 3.443037 CAAACGGATGCTACAGAGAGAG 58.557 50.000 0.00 0.00 0.00 3.20
2508 2559 2.417379 GCAAACGGATGCTACAGAGAGA 60.417 50.000 7.37 0.00 43.06 3.10
2509 2560 1.929836 GCAAACGGATGCTACAGAGAG 59.070 52.381 7.37 0.00 43.06 3.20
2510 2561 1.405526 GGCAAACGGATGCTACAGAGA 60.406 52.381 13.35 0.00 45.68 3.10
2511 2562 1.009829 GGCAAACGGATGCTACAGAG 58.990 55.000 13.35 0.00 45.68 3.35
2512 2563 0.392461 GGGCAAACGGATGCTACAGA 60.392 55.000 13.35 0.00 45.68 3.41
2513 2564 0.676466 TGGGCAAACGGATGCTACAG 60.676 55.000 13.35 0.00 45.68 2.74
2514 2565 0.034574 ATGGGCAAACGGATGCTACA 60.035 50.000 13.35 12.67 45.68 2.74
2515 2566 1.102978 AATGGGCAAACGGATGCTAC 58.897 50.000 13.35 8.28 45.68 3.58
2516 2567 1.476085 CAAATGGGCAAACGGATGCTA 59.524 47.619 13.35 5.05 45.68 3.49
2517 2568 0.247185 CAAATGGGCAAACGGATGCT 59.753 50.000 13.35 0.00 45.68 3.79
2518 2569 0.740516 CCAAATGGGCAAACGGATGC 60.741 55.000 6.17 6.17 45.67 3.91
2519 2570 0.607620 ACCAAATGGGCAAACGGATG 59.392 50.000 4.17 0.00 42.05 3.51
2520 2571 0.894835 GACCAAATGGGCAAACGGAT 59.105 50.000 0.00 0.00 44.76 4.18
2521 2572 2.346597 GACCAAATGGGCAAACGGA 58.653 52.632 0.00 0.00 44.76 4.69
2522 2573 4.985845 GACCAAATGGGCAAACGG 57.014 55.556 0.00 0.00 44.76 4.44
2528 2579 2.455674 GTCCAAAAGACCAAATGGGC 57.544 50.000 4.17 0.00 46.16 5.36
2551 2602 8.472007 ACCAAAAGGGAAAACTTTTTCTTTTT 57.528 26.923 17.47 13.79 45.61 1.94
2552 2603 7.721842 TGACCAAAAGGGAAAACTTTTTCTTTT 59.278 29.630 12.90 15.84 45.61 2.27
2553 2604 7.174253 GTGACCAAAAGGGAAAACTTTTTCTTT 59.826 33.333 12.90 9.70 45.61 2.52
2554 2605 6.653320 GTGACCAAAAGGGAAAACTTTTTCTT 59.347 34.615 12.90 5.19 45.61 2.52
2555 2606 6.170506 GTGACCAAAAGGGAAAACTTTTTCT 58.829 36.000 12.90 0.00 45.61 2.52
2556 2607 5.353123 GGTGACCAAAAGGGAAAACTTTTTC 59.647 40.000 0.00 5.97 45.61 2.29
2557 2608 5.250200 GGTGACCAAAAGGGAAAACTTTTT 58.750 37.500 0.00 0.00 45.61 1.94
2559 2610 4.481368 GGTGACCAAAAGGGAAAACTTT 57.519 40.909 0.00 0.00 42.17 2.66
2575 2626 2.885266 GGAAGAAGTCAAAAGGGGTGAC 59.115 50.000 0.00 0.00 44.75 3.67
2576 2627 2.783510 AGGAAGAAGTCAAAAGGGGTGA 59.216 45.455 0.00 0.00 0.00 4.02
2577 2628 3.229697 AGGAAGAAGTCAAAAGGGGTG 57.770 47.619 0.00 0.00 0.00 4.61
2578 2629 5.600669 AATAGGAAGAAGTCAAAAGGGGT 57.399 39.130 0.00 0.00 0.00 4.95
2579 2630 6.721668 AGAAAATAGGAAGAAGTCAAAAGGGG 59.278 38.462 0.00 0.00 0.00 4.79
2580 2631 7.767250 AGAAAATAGGAAGAAGTCAAAAGGG 57.233 36.000 0.00 0.00 0.00 3.95
2586 2637 9.503399 GGAGTTTTAGAAAATAGGAAGAAGTCA 57.497 33.333 0.00 0.00 0.00 3.41
2587 2638 8.657729 CGGAGTTTTAGAAAATAGGAAGAAGTC 58.342 37.037 0.00 0.00 0.00 3.01
2588 2639 7.119407 GCGGAGTTTTAGAAAATAGGAAGAAGT 59.881 37.037 0.00 0.00 0.00 3.01
2589 2640 7.334671 AGCGGAGTTTTAGAAAATAGGAAGAAG 59.665 37.037 0.00 0.00 0.00 2.85
2590 2641 7.119262 CAGCGGAGTTTTAGAAAATAGGAAGAA 59.881 37.037 0.00 0.00 0.00 2.52
2591 2642 6.594159 CAGCGGAGTTTTAGAAAATAGGAAGA 59.406 38.462 0.00 0.00 0.00 2.87
2592 2643 6.183360 CCAGCGGAGTTTTAGAAAATAGGAAG 60.183 42.308 0.00 0.00 0.00 3.46
2593 2644 5.646360 CCAGCGGAGTTTTAGAAAATAGGAA 59.354 40.000 0.00 0.00 0.00 3.36
2594 2645 5.183228 CCAGCGGAGTTTTAGAAAATAGGA 58.817 41.667 0.00 0.00 0.00 2.94
2595 2646 4.201920 GCCAGCGGAGTTTTAGAAAATAGG 60.202 45.833 0.00 0.00 0.00 2.57
2596 2647 4.636206 AGCCAGCGGAGTTTTAGAAAATAG 59.364 41.667 0.00 0.00 0.00 1.73
2597 2648 4.585879 AGCCAGCGGAGTTTTAGAAAATA 58.414 39.130 0.00 0.00 0.00 1.40
2598 2649 3.421844 AGCCAGCGGAGTTTTAGAAAAT 58.578 40.909 0.00 0.00 0.00 1.82
2599 2650 2.858745 AGCCAGCGGAGTTTTAGAAAA 58.141 42.857 0.00 0.00 0.00 2.29
2600 2651 2.561478 AGCCAGCGGAGTTTTAGAAA 57.439 45.000 0.00 0.00 0.00 2.52
2601 2652 2.561478 AAGCCAGCGGAGTTTTAGAA 57.439 45.000 0.00 0.00 0.00 2.10
2602 2653 3.906720 ATAAGCCAGCGGAGTTTTAGA 57.093 42.857 0.00 0.00 0.00 2.10
2603 2654 6.619801 ATTAATAAGCCAGCGGAGTTTTAG 57.380 37.500 0.00 0.00 0.00 1.85
2604 2655 7.121463 TGAAATTAATAAGCCAGCGGAGTTTTA 59.879 33.333 0.00 0.00 0.00 1.52
2605 2656 5.914898 AATTAATAAGCCAGCGGAGTTTT 57.085 34.783 0.00 0.00 0.00 2.43
2606 2657 5.417580 TGAAATTAATAAGCCAGCGGAGTTT 59.582 36.000 0.00 0.00 0.00 2.66
2607 2658 4.947388 TGAAATTAATAAGCCAGCGGAGTT 59.053 37.500 0.00 0.00 0.00 3.01
2608 2659 4.523083 TGAAATTAATAAGCCAGCGGAGT 58.477 39.130 0.00 0.00 0.00 3.85
2609 2660 5.499139 TTGAAATTAATAAGCCAGCGGAG 57.501 39.130 0.00 0.00 0.00 4.63
2610 2661 5.221224 CCATTGAAATTAATAAGCCAGCGGA 60.221 40.000 0.00 0.00 0.00 5.54
2611 2662 4.984161 CCATTGAAATTAATAAGCCAGCGG 59.016 41.667 0.00 0.00 0.00 5.52
2612 2663 5.591099 ACCATTGAAATTAATAAGCCAGCG 58.409 37.500 0.00 0.00 0.00 5.18
2613 2664 5.985530 GGACCATTGAAATTAATAAGCCAGC 59.014 40.000 0.00 0.00 0.00 4.85
2614 2665 7.352079 AGGACCATTGAAATTAATAAGCCAG 57.648 36.000 0.00 0.00 0.00 4.85
2615 2666 6.323739 GGAGGACCATTGAAATTAATAAGCCA 59.676 38.462 0.00 0.00 35.97 4.75
2616 2667 6.515035 CGGAGGACCATTGAAATTAATAAGCC 60.515 42.308 0.00 0.00 35.59 4.35
2617 2668 6.438763 CGGAGGACCATTGAAATTAATAAGC 58.561 40.000 0.00 0.00 35.59 3.09
2618 2669 6.039270 TGCGGAGGACCATTGAAATTAATAAG 59.961 38.462 0.00 0.00 35.59 1.73
2619 2670 5.888724 TGCGGAGGACCATTGAAATTAATAA 59.111 36.000 0.00 0.00 35.59 1.40
2620 2671 5.441500 TGCGGAGGACCATTGAAATTAATA 58.558 37.500 0.00 0.00 35.59 0.98
2621 2672 4.277476 TGCGGAGGACCATTGAAATTAAT 58.723 39.130 0.00 0.00 35.59 1.40
2622 2673 3.691575 TGCGGAGGACCATTGAAATTAA 58.308 40.909 0.00 0.00 35.59 1.40
2623 2674 3.358111 TGCGGAGGACCATTGAAATTA 57.642 42.857 0.00 0.00 35.59 1.40
2624 2675 2.214376 TGCGGAGGACCATTGAAATT 57.786 45.000 0.00 0.00 35.59 1.82
2625 2676 2.094675 CTTGCGGAGGACCATTGAAAT 58.905 47.619 0.00 0.00 35.59 2.17
2626 2677 1.073125 TCTTGCGGAGGACCATTGAAA 59.927 47.619 0.00 0.00 35.59 2.69
2627 2678 0.690192 TCTTGCGGAGGACCATTGAA 59.310 50.000 0.00 0.00 35.59 2.69
2628 2679 0.690192 TTCTTGCGGAGGACCATTGA 59.310 50.000 0.00 0.00 35.59 2.57
2629 2680 1.089920 CTTCTTGCGGAGGACCATTG 58.910 55.000 0.00 0.00 35.59 2.82
2630 2681 0.693049 ACTTCTTGCGGAGGACCATT 59.307 50.000 0.00 0.00 35.59 3.16
2631 2682 0.250513 GACTTCTTGCGGAGGACCAT 59.749 55.000 0.00 0.00 35.59 3.55
2632 2683 1.118965 TGACTTCTTGCGGAGGACCA 61.119 55.000 0.00 0.00 35.59 4.02
2633 2684 0.034896 TTGACTTCTTGCGGAGGACC 59.965 55.000 0.00 0.00 0.00 4.46
2634 2685 1.801178 CTTTGACTTCTTGCGGAGGAC 59.199 52.381 0.00 0.00 0.00 3.85
2635 2686 1.416401 ACTTTGACTTCTTGCGGAGGA 59.584 47.619 0.00 0.00 0.00 3.71
2636 2687 1.884235 ACTTTGACTTCTTGCGGAGG 58.116 50.000 0.00 0.00 0.00 4.30
2637 2688 3.621794 CAAACTTTGACTTCTTGCGGAG 58.378 45.455 0.00 0.00 0.00 4.63
2638 2689 2.223479 GCAAACTTTGACTTCTTGCGGA 60.223 45.455 5.65 0.00 33.74 5.54
2639 2690 2.119457 GCAAACTTTGACTTCTTGCGG 58.881 47.619 5.65 0.00 33.74 5.69
2640 2691 2.796304 TGCAAACTTTGACTTCTTGCG 58.204 42.857 5.65 0.00 44.16 4.85
2641 2692 4.505301 GTTGCAAACTTTGACTTCTTGC 57.495 40.909 0.00 0.00 45.32 4.01
2655 2706 2.489971 CGTCCAAGAGTAGGTTGCAAA 58.510 47.619 0.00 0.00 0.00 3.68
2656 2707 1.270625 CCGTCCAAGAGTAGGTTGCAA 60.271 52.381 0.00 0.00 0.00 4.08
2657 2708 0.320374 CCGTCCAAGAGTAGGTTGCA 59.680 55.000 0.00 0.00 0.00 4.08
2658 2709 0.606604 TCCGTCCAAGAGTAGGTTGC 59.393 55.000 0.00 0.00 0.00 4.17
2659 2710 1.204941 CCTCCGTCCAAGAGTAGGTTG 59.795 57.143 0.00 0.00 0.00 3.77
2660 2711 1.558233 CCTCCGTCCAAGAGTAGGTT 58.442 55.000 0.00 0.00 0.00 3.50
2661 2712 0.324460 CCCTCCGTCCAAGAGTAGGT 60.324 60.000 0.00 0.00 0.00 3.08
2662 2713 0.033405 TCCCTCCGTCCAAGAGTAGG 60.033 60.000 0.00 0.00 0.00 3.18
2663 2714 1.341187 ACTCCCTCCGTCCAAGAGTAG 60.341 57.143 0.00 0.00 36.08 2.57
2664 2715 0.702902 ACTCCCTCCGTCCAAGAGTA 59.297 55.000 0.00 0.00 36.08 2.59
2665 2716 0.702902 TACTCCCTCCGTCCAAGAGT 59.297 55.000 0.00 0.00 40.70 3.24
2666 2717 1.394618 CTACTCCCTCCGTCCAAGAG 58.605 60.000 0.00 0.00 0.00 2.85
2667 2718 0.683504 GCTACTCCCTCCGTCCAAGA 60.684 60.000 0.00 0.00 0.00 3.02
2668 2719 0.684805 AGCTACTCCCTCCGTCCAAG 60.685 60.000 0.00 0.00 0.00 3.61
2669 2720 0.252103 AAGCTACTCCCTCCGTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2670 2721 0.252103 AAAGCTACTCCCTCCGTCCA 60.252 55.000 0.00 0.00 0.00 4.02
2671 2722 0.903236 AAAAGCTACTCCCTCCGTCC 59.097 55.000 0.00 0.00 0.00 4.79
2672 2723 3.881937 TTAAAAGCTACTCCCTCCGTC 57.118 47.619 0.00 0.00 0.00 4.79
2673 2724 4.838904 ATTTAAAAGCTACTCCCTCCGT 57.161 40.909 0.00 0.00 0.00 4.69
2674 2725 4.575236 GGAATTTAAAAGCTACTCCCTCCG 59.425 45.833 0.00 0.00 0.00 4.63
2675 2726 5.506708 TGGAATTTAAAAGCTACTCCCTCC 58.493 41.667 0.00 0.00 0.00 4.30
2676 2727 6.181190 ACTGGAATTTAAAAGCTACTCCCTC 58.819 40.000 0.00 0.00 0.00 4.30
2677 2728 6.140968 ACTGGAATTTAAAAGCTACTCCCT 57.859 37.500 0.00 0.00 0.00 4.20
2678 2729 6.835819 AACTGGAATTTAAAAGCTACTCCC 57.164 37.500 0.00 0.00 0.00 4.30
2724 2775 9.420118 TGCAGGAGAATATGTTTGGTTAATAAT 57.580 29.630 0.00 0.00 0.00 1.28
2725 2776 8.815565 TGCAGGAGAATATGTTTGGTTAATAA 57.184 30.769 0.00 0.00 0.00 1.40
2726 2777 8.815565 TTGCAGGAGAATATGTTTGGTTAATA 57.184 30.769 0.00 0.00 0.00 0.98
2727 2778 7.716799 TTGCAGGAGAATATGTTTGGTTAAT 57.283 32.000 0.00 0.00 0.00 1.40
2728 2779 7.716799 ATTGCAGGAGAATATGTTTGGTTAA 57.283 32.000 0.00 0.00 0.00 2.01
2729 2780 7.716799 AATTGCAGGAGAATATGTTTGGTTA 57.283 32.000 0.00 0.00 0.00 2.85
2730 2781 6.610075 AATTGCAGGAGAATATGTTTGGTT 57.390 33.333 0.00 0.00 0.00 3.67
2731 2782 6.610075 AAATTGCAGGAGAATATGTTTGGT 57.390 33.333 0.00 0.00 0.00 3.67
2732 2783 6.254157 CGAAAATTGCAGGAGAATATGTTTGG 59.746 38.462 0.00 0.00 0.00 3.28
2733 2784 6.808212 ACGAAAATTGCAGGAGAATATGTTTG 59.192 34.615 0.00 0.00 0.00 2.93
2734 2785 6.924111 ACGAAAATTGCAGGAGAATATGTTT 58.076 32.000 0.00 0.00 0.00 2.83
2735 2786 6.515272 ACGAAAATTGCAGGAGAATATGTT 57.485 33.333 0.00 0.00 0.00 2.71
2736 2787 6.515272 AACGAAAATTGCAGGAGAATATGT 57.485 33.333 0.00 0.00 0.00 2.29
2737 2788 7.697691 AGTAACGAAAATTGCAGGAGAATATG 58.302 34.615 0.00 0.00 0.00 1.78
2738 2789 7.865706 AGTAACGAAAATTGCAGGAGAATAT 57.134 32.000 0.00 0.00 0.00 1.28
2739 2790 7.681939 AAGTAACGAAAATTGCAGGAGAATA 57.318 32.000 0.00 0.00 0.00 1.75
2740 2791 6.575162 AAGTAACGAAAATTGCAGGAGAAT 57.425 33.333 0.00 0.00 0.00 2.40
2741 2792 7.499321 TTAAGTAACGAAAATTGCAGGAGAA 57.501 32.000 0.00 0.00 0.00 2.87
2742 2793 7.499321 TTTAAGTAACGAAAATTGCAGGAGA 57.501 32.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.