Multiple sequence alignment - TraesCS1D01G386300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G386300 chr1D 100.000 5831 0 0 1 5831 459043232 459037402 0.000000e+00 10768.0
1 TraesCS1D01G386300 chr1D 85.738 4130 532 42 840 4939 459031609 459027507 0.000000e+00 4311.0
2 TraesCS1D01G386300 chr1D 88.000 350 34 7 5267 5613 170043676 170043332 1.960000e-109 407.0
3 TraesCS1D01G386300 chr1B 90.362 4202 372 26 852 5039 631203883 631199701 0.000000e+00 5485.0
4 TraesCS1D01G386300 chr1B 90.369 4122 354 30 849 4940 631222082 631217974 0.000000e+00 5373.0
5 TraesCS1D01G386300 chr1B 79.752 484 45 25 211 646 631223152 631222674 9.500000e-78 302.0
6 TraesCS1D01G386300 chr1A 88.128 3302 364 20 876 4156 551463775 551460481 0.000000e+00 3901.0
7 TraesCS1D01G386300 chr1A 88.030 1345 149 8 3626 4964 551443294 551441956 0.000000e+00 1581.0
8 TraesCS1D01G386300 chr1A 85.035 715 96 9 4140 4847 551458803 551458093 0.000000e+00 717.0
9 TraesCS1D01G386300 chr1A 85.689 559 32 20 194 713 551464728 551464179 3.970000e-151 545.0
10 TraesCS1D01G386300 chr1A 92.283 311 21 3 37 346 551465333 551465025 6.940000e-119 438.0
11 TraesCS1D01G386300 chr3D 77.973 3927 776 64 998 4874 428251415 428255302 0.000000e+00 2377.0
12 TraesCS1D01G386300 chr3D 77.644 3914 769 75 981 4834 428245445 428249312 0.000000e+00 2283.0
13 TraesCS1D01G386300 chr3D 81.784 527 64 26 5267 5778 204564155 204563646 4.200000e-111 412.0
14 TraesCS1D01G386300 chr3D 81.168 531 63 26 5267 5778 204572509 204571997 5.480000e-105 392.0
15 TraesCS1D01G386300 chr3D 92.032 251 10 6 5536 5778 204579403 204579155 1.560000e-90 344.0
16 TraesCS1D01G386300 chr3A 77.863 3930 782 65 998 4877 557413356 557409465 0.000000e+00 2357.0
17 TraesCS1D01G386300 chr6D 76.039 3923 801 89 1009 4874 469800207 469804047 0.000000e+00 1908.0
18 TraesCS1D01G386300 chrUn 75.846 3962 799 99 1015 4910 62079765 62075896 0.000000e+00 1869.0
19 TraesCS1D01G386300 chrUn 76.981 1716 314 38 1015 2706 331320436 331318778 0.000000e+00 905.0
20 TraesCS1D01G386300 chr4A 74.719 3920 863 97 1024 4876 736147331 736151189 0.000000e+00 1631.0
21 TraesCS1D01G386300 chr4A 74.446 3432 761 85 1520 4874 736724764 736728156 0.000000e+00 1373.0
22 TraesCS1D01G386300 chr4A 76.515 2542 524 51 1037 3532 736055987 736058501 0.000000e+00 1319.0
23 TraesCS1D01G386300 chr4A 75.980 2602 537 66 1037 3582 735767166 735769735 0.000000e+00 1262.0
24 TraesCS1D01G386300 chr4A 75.292 1967 429 41 1024 2957 735818754 735820696 0.000000e+00 887.0
25 TraesCS1D01G386300 chr4A 74.003 1881 434 49 3029 4876 735005446 735007304 0.000000e+00 713.0
26 TraesCS1D01G386300 chr4A 74.765 531 106 22 4359 4874 736123090 736123607 4.580000e-51 213.0
27 TraesCS1D01G386300 chr4A 74.848 493 105 15 4391 4874 734881465 734881947 7.660000e-49 206.0
28 TraesCS1D01G386300 chr7A 74.586 3923 837 113 1037 4874 7322271 7318424 0.000000e+00 1574.0
29 TraesCS1D01G386300 chr7B 75.872 3067 657 72 1780 4812 746528366 746525349 0.000000e+00 1487.0
30 TraesCS1D01G386300 chr3B 78.982 1984 369 29 998 2957 559886835 559888794 0.000000e+00 1310.0
31 TraesCS1D01G386300 chr3B 77.378 1861 391 25 3035 4874 559890712 559892563 0.000000e+00 1077.0
32 TraesCS1D01G386300 chr3B 89.908 436 34 5 5349 5774 280937651 280938086 2.370000e-153 553.0
33 TraesCS1D01G386300 chr3B 88.800 250 19 6 5537 5778 280500427 280500675 1.230000e-76 298.0
34 TraesCS1D01G386300 chr3B 88.000 250 21 6 5537 5778 280508008 280508256 2.660000e-73 287.0
35 TraesCS1D01G386300 chr3B 95.098 102 4 1 5731 5831 649805863 649805762 6.050000e-35 159.0
36 TraesCS1D01G386300 chr3B 100.000 50 0 0 5782 5831 369244011 369243962 6.220000e-15 93.5
37 TraesCS1D01G386300 chr7D 74.800 2627 571 76 2241 4824 5665574 5662996 0.000000e+00 1099.0
38 TraesCS1D01G386300 chr2B 88.000 450 42 7 5340 5778 274695190 274694742 6.700000e-144 521.0
39 TraesCS1D01G386300 chr2B 87.783 442 41 7 5349 5778 281302075 281302515 6.740000e-139 505.0
40 TraesCS1D01G386300 chr2B 82.386 528 65 21 5267 5778 352142572 352142057 8.970000e-118 435.0
41 TraesCS1D01G386300 chr4D 89.049 347 30 7 5271 5614 407109037 407109378 1.940000e-114 424.0
42 TraesCS1D01G386300 chr4D 87.709 358 32 11 5267 5620 407102159 407102508 1.960000e-109 407.0
43 TraesCS1D01G386300 chr5D 88.515 357 30 10 5267 5620 129748443 129748791 6.990000e-114 422.0
44 TraesCS1D01G386300 chr5D 88.235 357 31 10 5267 5620 129756006 129756354 3.250000e-112 416.0
45 TraesCS1D01G386300 chr2D 88.034 351 32 8 5266 5613 69414436 69414779 1.960000e-109 407.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G386300 chr1D 459037402 459043232 5830 True 10768.00 10768 100.00000 1 5831 1 chr1D.!!$R3 5830
1 TraesCS1D01G386300 chr1D 459027507 459031609 4102 True 4311.00 4311 85.73800 840 4939 1 chr1D.!!$R2 4099
2 TraesCS1D01G386300 chr1B 631199701 631203883 4182 True 5485.00 5485 90.36200 852 5039 1 chr1B.!!$R1 4187
3 TraesCS1D01G386300 chr1B 631217974 631223152 5178 True 2837.50 5373 85.06050 211 4940 2 chr1B.!!$R2 4729
4 TraesCS1D01G386300 chr1A 551441956 551443294 1338 True 1581.00 1581 88.03000 3626 4964 1 chr1A.!!$R1 1338
5 TraesCS1D01G386300 chr1A 551458093 551465333 7240 True 1400.25 3901 87.78375 37 4847 4 chr1A.!!$R2 4810
6 TraesCS1D01G386300 chr3D 428245445 428255302 9857 False 2330.00 2377 77.80850 981 4874 2 chr3D.!!$F1 3893
7 TraesCS1D01G386300 chr3D 204563646 204564155 509 True 412.00 412 81.78400 5267 5778 1 chr3D.!!$R1 511
8 TraesCS1D01G386300 chr3D 204571997 204572509 512 True 392.00 392 81.16800 5267 5778 1 chr3D.!!$R2 511
9 TraesCS1D01G386300 chr3A 557409465 557413356 3891 True 2357.00 2357 77.86300 998 4877 1 chr3A.!!$R1 3879
10 TraesCS1D01G386300 chr6D 469800207 469804047 3840 False 1908.00 1908 76.03900 1009 4874 1 chr6D.!!$F1 3865
11 TraesCS1D01G386300 chrUn 62075896 62079765 3869 True 1869.00 1869 75.84600 1015 4910 1 chrUn.!!$R1 3895
12 TraesCS1D01G386300 chrUn 331318778 331320436 1658 True 905.00 905 76.98100 1015 2706 1 chrUn.!!$R2 1691
13 TraesCS1D01G386300 chr4A 736147331 736151189 3858 False 1631.00 1631 74.71900 1024 4876 1 chr4A.!!$F7 3852
14 TraesCS1D01G386300 chr4A 736724764 736728156 3392 False 1373.00 1373 74.44600 1520 4874 1 chr4A.!!$F8 3354
15 TraesCS1D01G386300 chr4A 736055987 736058501 2514 False 1319.00 1319 76.51500 1037 3532 1 chr4A.!!$F5 2495
16 TraesCS1D01G386300 chr4A 735767166 735769735 2569 False 1262.00 1262 75.98000 1037 3582 1 chr4A.!!$F3 2545
17 TraesCS1D01G386300 chr4A 735818754 735820696 1942 False 887.00 887 75.29200 1024 2957 1 chr4A.!!$F4 1933
18 TraesCS1D01G386300 chr4A 735005446 735007304 1858 False 713.00 713 74.00300 3029 4876 1 chr4A.!!$F2 1847
19 TraesCS1D01G386300 chr4A 736123090 736123607 517 False 213.00 213 74.76500 4359 4874 1 chr4A.!!$F6 515
20 TraesCS1D01G386300 chr7A 7318424 7322271 3847 True 1574.00 1574 74.58600 1037 4874 1 chr7A.!!$R1 3837
21 TraesCS1D01G386300 chr7B 746525349 746528366 3017 True 1487.00 1487 75.87200 1780 4812 1 chr7B.!!$R1 3032
22 TraesCS1D01G386300 chr3B 559886835 559892563 5728 False 1193.50 1310 78.18000 998 4874 2 chr3B.!!$F4 3876
23 TraesCS1D01G386300 chr7D 5662996 5665574 2578 True 1099.00 1099 74.80000 2241 4824 1 chr7D.!!$R1 2583
24 TraesCS1D01G386300 chr2B 352142057 352142572 515 True 435.00 435 82.38600 5267 5778 1 chr2B.!!$R2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 250 0.034059 CAAGGAGTCCAACTCAGCGT 59.966 55.0 12.86 0.0 46.79 5.07 F
531 1007 0.250901 ATCTGTCCTTTTGGCTGCGT 60.251 50.0 0.00 0.0 40.12 5.24 F
1188 2259 0.035439 GCAACCACAGGGCTAAGCTA 60.035 55.0 0.00 0.0 37.90 3.32 F
1420 2494 0.449388 GCTGAATGAACTGAAGGCCG 59.551 55.0 0.00 0.0 0.00 6.13 F
1802 2900 1.044231 TCTGCGGTAAAGGGCGGATA 61.044 55.0 0.00 0.0 39.51 2.59 F
3331 12266 0.919710 ACTTAGGGGCCTCACAATCC 59.080 55.0 4.79 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 2199 0.035317 TCAGCTCGAACTGTGGCATT 59.965 50.000 15.10 0.0 38.84 3.56 R
1420 2494 0.387565 TCCTTGCCTTTCGCCAAAAC 59.612 50.000 0.00 0.0 36.24 2.43 R
2360 3467 1.168714 GTGAACCAACTCCCTCATGC 58.831 55.000 0.00 0.0 0.00 4.06 R
3116 12051 1.503542 CCACCAAGCTCGTTCATGC 59.496 57.895 0.00 0.0 0.00 4.06 R
3456 12391 0.813821 GAAGTGAGCAGCAATTCCCC 59.186 55.000 8.12 0.0 43.75 4.81 R
5052 15740 0.029300 CACGGTTCCAGTTGCAGTTG 59.971 55.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.777865 TGTTTCTTCTATTCACTGACTATTGG 57.222 34.615 0.00 0.00 0.00 3.16
27 28 7.334421 TGTTTCTTCTATTCACTGACTATTGGC 59.666 37.037 0.00 0.00 0.00 4.52
28 29 5.918608 TCTTCTATTCACTGACTATTGGCC 58.081 41.667 0.00 0.00 0.00 5.36
29 30 4.689612 TCTATTCACTGACTATTGGCCC 57.310 45.455 0.00 0.00 0.00 5.80
30 31 2.332063 ATTCACTGACTATTGGCCCG 57.668 50.000 0.00 0.00 0.00 6.13
31 32 0.392461 TTCACTGACTATTGGCCCGC 60.392 55.000 0.00 0.00 0.00 6.13
32 33 2.173669 CACTGACTATTGGCCCGCG 61.174 63.158 0.00 0.00 0.00 6.46
33 34 2.186903 CTGACTATTGGCCCGCGT 59.813 61.111 4.92 0.00 0.00 6.01
34 35 1.324740 ACTGACTATTGGCCCGCGTA 61.325 55.000 4.92 0.00 0.00 4.42
35 36 0.874607 CTGACTATTGGCCCGCGTAC 60.875 60.000 4.92 0.00 0.00 3.67
40 41 1.042003 TATTGGCCCGCGTACCACTA 61.042 55.000 16.10 12.58 35.10 2.74
42 43 2.510012 GGCCCGCGTACCACTAAC 60.510 66.667 4.92 0.00 0.00 2.34
52 53 2.747989 CGTACCACTAACTGCTGAGAGA 59.252 50.000 0.00 0.00 0.00 3.10
98 99 8.774586 GTTGGCGAGTAATTCTATAACATGAAT 58.225 33.333 0.00 0.00 34.75 2.57
99 100 8.310406 TGGCGAGTAATTCTATAACATGAATG 57.690 34.615 0.00 0.00 33.72 2.67
102 103 7.624344 GCGAGTAATTCTATAACATGAATGGGC 60.624 40.741 0.00 0.00 33.72 5.36
110 111 0.682209 ACATGAATGGGCCTGTCAGC 60.682 55.000 4.53 0.00 0.00 4.26
114 115 1.303888 AATGGGCCTGTCAGCTGTG 60.304 57.895 14.67 5.43 0.00 3.66
145 146 1.533338 CGGTACAGCCTACGCTACTTG 60.533 57.143 0.00 0.00 46.25 3.16
231 233 8.570068 AGAGTGGTTACAGTTTAGTTTTTCAA 57.430 30.769 0.00 0.00 0.00 2.69
232 234 8.674607 AGAGTGGTTACAGTTTAGTTTTTCAAG 58.325 33.333 0.00 0.00 0.00 3.02
248 250 0.034059 CAAGGAGTCCAACTCAGCGT 59.966 55.000 12.86 0.00 46.79 5.07
249 251 0.759346 AAGGAGTCCAACTCAGCGTT 59.241 50.000 12.86 0.00 46.79 4.84
263 265 8.875803 CCAACTCAGCGTTAACTTAATTATACA 58.124 33.333 3.71 0.00 33.63 2.29
290 293 3.321950 AGATCTGGGGTTATCTTCCTGG 58.678 50.000 0.00 0.00 0.00 4.45
297 300 1.768870 GGTTATCTTCCTGGCCTGCTA 59.231 52.381 3.32 0.00 0.00 3.49
316 319 2.622064 ACTTTTGGAGACTTCTGCGT 57.378 45.000 0.00 0.00 37.10 5.24
318 321 2.103263 ACTTTTGGAGACTTCTGCGTCT 59.897 45.455 0.00 0.00 46.39 4.18
404 873 2.172505 TCTGACAACTTCCAAGCTCCAA 59.827 45.455 0.00 0.00 0.00 3.53
457 932 7.981142 TCTGACGTTTTCACTTGATAGTTTTT 58.019 30.769 0.00 0.00 30.26 1.94
497 972 5.918608 AGATATACTTCTGTCGGCACAAAT 58.081 37.500 0.00 0.00 29.82 2.32
506 981 2.253603 GTCGGCACAAATGAAGAATGC 58.746 47.619 0.00 0.00 35.51 3.56
519 995 5.633830 TGAAGAATGCAAGAAATCTGTCC 57.366 39.130 0.00 0.00 0.00 4.02
529 1005 2.560105 AGAAATCTGTCCTTTTGGCTGC 59.440 45.455 0.00 0.00 40.12 5.25
531 1007 0.250901 ATCTGTCCTTTTGGCTGCGT 60.251 50.000 0.00 0.00 40.12 5.24
648 1145 6.434965 TGCTCAATTTCATTTCCTCAGATCAA 59.565 34.615 0.00 0.00 0.00 2.57
649 1146 7.123697 TGCTCAATTTCATTTCCTCAGATCAAT 59.876 33.333 0.00 0.00 0.00 2.57
660 1157 6.627087 TCCTCAGATCAATCCATTATACCC 57.373 41.667 0.00 0.00 0.00 3.69
697 1194 2.094390 AGTCCACTTCTATTGCGCGTTA 60.094 45.455 8.43 0.00 0.00 3.18
713 1210 5.402867 TGCGCGTTATTCATTTCGTCATATA 59.597 36.000 8.43 0.00 0.00 0.86
714 1211 5.946389 GCGCGTTATTCATTTCGTCATATAG 59.054 40.000 8.43 0.00 0.00 1.31
715 1212 6.183359 GCGCGTTATTCATTTCGTCATATAGA 60.183 38.462 8.43 0.00 0.00 1.98
716 1213 7.462856 GCGCGTTATTCATTTCGTCATATAGAT 60.463 37.037 8.43 0.00 0.00 1.98
717 1214 8.044983 CGCGTTATTCATTTCGTCATATAGATC 58.955 37.037 0.00 0.00 0.00 2.75
718 1215 8.321716 GCGTTATTCATTTCGTCATATAGATCC 58.678 37.037 0.00 0.00 0.00 3.36
719 1216 9.353999 CGTTATTCATTTCGTCATATAGATCCA 57.646 33.333 0.00 0.00 0.00 3.41
728 1225 8.832458 TTCGTCATATAGATCCATTATACCCA 57.168 34.615 0.00 0.00 0.00 4.51
729 1226 8.465273 TCGTCATATAGATCCATTATACCCAG 57.535 38.462 0.00 0.00 0.00 4.45
730 1227 8.279361 TCGTCATATAGATCCATTATACCCAGA 58.721 37.037 0.00 0.00 0.00 3.86
731 1228 8.914011 CGTCATATAGATCCATTATACCCAGAA 58.086 37.037 0.00 0.00 0.00 3.02
761 1258 9.952030 AAAAAGAAAAATCCAAAAGTAGGAACA 57.048 25.926 0.00 0.00 38.93 3.18
762 1259 9.952030 AAAAGAAAAATCCAAAAGTAGGAACAA 57.048 25.926 0.00 0.00 38.93 2.83
770 1267 7.696992 TCCAAAAGTAGGAACAATTATGTCC 57.303 36.000 0.00 0.00 39.40 4.02
771 1268 6.661805 TCCAAAAGTAGGAACAATTATGTCCC 59.338 38.462 0.00 0.00 39.40 4.46
772 1269 6.404293 CCAAAAGTAGGAACAATTATGTCCCG 60.404 42.308 0.00 0.00 39.40 5.14
773 1270 3.805207 AGTAGGAACAATTATGTCCCGC 58.195 45.455 0.00 0.00 39.40 6.13
774 1271 2.052782 AGGAACAATTATGTCCCGCC 57.947 50.000 0.00 0.00 39.40 6.13
775 1272 1.029681 GGAACAATTATGTCCCGCCC 58.970 55.000 0.00 0.00 39.40 6.13
776 1273 1.409661 GGAACAATTATGTCCCGCCCT 60.410 52.381 0.00 0.00 39.40 5.19
777 1274 2.375146 GAACAATTATGTCCCGCCCTT 58.625 47.619 0.00 0.00 39.40 3.95
780 1517 2.240160 ACAATTATGTCCCGCCCTTGTA 59.760 45.455 0.00 0.00 33.41 2.41
786 1523 2.365901 CCCGCCCTTGTACCCCTA 60.366 66.667 0.00 0.00 0.00 3.53
814 1551 2.435069 CACTTCATCTCCTCCTGCATCT 59.565 50.000 0.00 0.00 0.00 2.90
817 1554 2.973710 TCATCTCCTCCTGCATCTCAT 58.026 47.619 0.00 0.00 0.00 2.90
827 1564 3.201487 TCCTGCATCTCATCATCCAAGTT 59.799 43.478 0.00 0.00 0.00 2.66
833 1570 2.777692 TCTCATCATCCAAGTTACCCCC 59.222 50.000 0.00 0.00 0.00 5.40
834 1571 2.509548 CTCATCATCCAAGTTACCCCCA 59.490 50.000 0.00 0.00 0.00 4.96
836 1573 0.996583 TCATCCAAGTTACCCCCACC 59.003 55.000 0.00 0.00 0.00 4.61
838 1575 1.568118 ATCCAAGTTACCCCCACCCG 61.568 60.000 0.00 0.00 0.00 5.28
839 1576 2.225596 CCAAGTTACCCCCACCCGA 61.226 63.158 0.00 0.00 0.00 5.14
841 1578 0.322187 CAAGTTACCCCCACCCGAAG 60.322 60.000 0.00 0.00 0.00 3.79
846 1583 0.694196 TACCCCCACCCGAAGAAAAG 59.306 55.000 0.00 0.00 0.00 2.27
847 1584 1.304134 CCCCCACCCGAAGAAAAGG 60.304 63.158 0.00 0.00 0.00 3.11
873 1761 4.625607 AATCTGTCTCCGGAGTTCTTTT 57.374 40.909 30.17 16.59 0.00 2.27
874 1942 5.740290 AATCTGTCTCCGGAGTTCTTTTA 57.260 39.130 30.17 7.04 0.00 1.52
876 1944 3.257624 TCTGTCTCCGGAGTTCTTTTACC 59.742 47.826 30.17 9.06 0.00 2.85
877 1945 3.236896 TGTCTCCGGAGTTCTTTTACCT 58.763 45.455 30.17 0.00 0.00 3.08
878 1946 3.006537 TGTCTCCGGAGTTCTTTTACCTG 59.993 47.826 30.17 1.44 0.00 4.00
919 1987 8.633561 CAGTTAAAATCTTCCAAAGTTTCCTCT 58.366 33.333 0.00 0.00 0.00 3.69
930 1998 5.106673 CCAAAGTTTCCTCTATTTCGTGTCC 60.107 44.000 0.00 0.00 0.00 4.02
933 2001 5.238583 AGTTTCCTCTATTTCGTGTCCTTG 58.761 41.667 0.00 0.00 0.00 3.61
995 2066 3.457610 AACATCCCAAACAAACTGCAG 57.542 42.857 13.48 13.48 0.00 4.41
1067 2138 1.066286 CCTGAAGAAGCTCCTCACTGG 60.066 57.143 0.00 0.00 37.10 4.00
1072 2143 2.452505 AGAAGCTCCTCACTGGTACTC 58.547 52.381 0.00 0.00 37.07 2.59
1188 2259 0.035439 GCAACCACAGGGCTAAGCTA 60.035 55.000 0.00 0.00 37.90 3.32
1218 2289 3.416156 GATCCAAGACCTCAAACAAGCT 58.584 45.455 0.00 0.00 0.00 3.74
1332 2406 2.432146 CTCCACCAGCAGCACTATTCTA 59.568 50.000 0.00 0.00 0.00 2.10
1420 2494 0.449388 GCTGAATGAACTGAAGGCCG 59.551 55.000 0.00 0.00 0.00 6.13
1560 2655 2.167900 AGTAATAGGCCGTGACAAGGAC 59.832 50.000 12.01 8.61 36.92 3.85
1802 2900 1.044231 TCTGCGGTAAAGGGCGGATA 61.044 55.000 0.00 0.00 39.51 2.59
1988 3089 7.480810 AGCAAAGTTTTGATAACTTCTCGTTT 58.519 30.769 8.70 0.00 39.36 3.60
2123 3224 4.867047 CAGAGAACATAGTTTGCGTCAGAT 59.133 41.667 0.00 0.00 0.00 2.90
2223 3324 3.206150 GAGCAGGAAAAAGGATATCGCA 58.794 45.455 0.00 0.00 0.00 5.10
2304 3411 6.802348 CGTGGAGTTATGATAAGTTAGATCCG 59.198 42.308 0.00 0.00 0.00 4.18
2360 3467 9.265901 CTTATATCCAAAAGGCTATCGATATGG 57.734 37.037 12.40 12.40 0.00 2.74
2492 3606 6.985645 TCAGTTTCATTCTTTCAACCAATTGG 59.014 34.615 23.31 23.31 42.17 3.16
2586 3715 5.234757 GCACTGCTTCAGATTAGAAGATGAG 59.765 44.000 7.81 3.05 46.18 2.90
2598 9681 2.235898 AGAAGATGAGAAGGTGGCAGAC 59.764 50.000 0.00 0.00 0.00 3.51
2781 9867 7.937649 AGTTGCGTGTACTATATCTGTCATTA 58.062 34.615 0.00 0.00 0.00 1.90
2804 9890 1.267806 CAACAGTAGCAAGTTGCCAGG 59.732 52.381 24.02 13.53 46.52 4.45
2920 10006 8.081025 ACTTACAGTTCCTTAAGTTAAGTCTCG 58.919 37.037 18.98 6.18 35.43 4.04
3072 12007 8.135529 ACTTTGCTCCAACAACTTTATAACTTC 58.864 33.333 0.00 0.00 0.00 3.01
3077 12012 7.435068 TCCAACAACTTTATAACTTCTCTGC 57.565 36.000 0.00 0.00 0.00 4.26
3078 12013 6.995686 TCCAACAACTTTATAACTTCTCTGCA 59.004 34.615 0.00 0.00 0.00 4.41
3209 12144 2.301009 AGTCGAACCTACACCGGAAAAT 59.699 45.455 9.46 0.00 0.00 1.82
3231 12166 6.899393 ATTCATCTTGAAAGTTTGCACCTA 57.101 33.333 0.00 0.00 40.12 3.08
3331 12266 0.919710 ACTTAGGGGCCTCACAATCC 59.080 55.000 4.79 0.00 0.00 3.01
3456 12391 4.789012 ACCAACCAATGCAGAACTATTG 57.211 40.909 0.00 0.00 34.79 1.90
3495 12430 1.962807 CACCTCAGGAATGTGCCAAAA 59.037 47.619 0.00 0.00 0.00 2.44
3544 12480 8.734386 CAGCAGGTCTTAAAGAGTTATCAATTT 58.266 33.333 0.00 0.00 0.00 1.82
3664 12603 2.097466 CCTTTGATAACGCATGTGGGTC 59.903 50.000 11.65 6.09 40.50 4.46
3681 12631 2.095415 GGGTCCAGTATCAAAAACACGC 60.095 50.000 0.00 0.00 0.00 5.34
3751 12701 4.586841 TGATGGATGTGGATATGTCACGTA 59.413 41.667 0.00 0.00 37.91 3.57
3982 12953 1.882623 CTTCACTGAGAAGTTTGGCCC 59.117 52.381 0.00 0.00 46.97 5.80
4071 13042 4.137543 GTGACCTGGAAATCAAGTCTTGT 58.862 43.478 12.30 0.00 37.63 3.16
4184 14852 4.521639 TGGAGATGAAATGCCATTATCTGC 59.478 41.667 12.33 12.33 36.94 4.26
4206 14874 6.929625 TGCTGAGGAGCTCATTATATTCTAC 58.070 40.000 17.19 0.00 46.39 2.59
4257 14927 0.743701 GTCTGCAGCACCTGAGATGG 60.744 60.000 9.47 0.00 32.44 3.51
4310 14980 4.393834 TCCTTGTCAATCGGTCATTTGAA 58.606 39.130 0.00 0.00 33.90 2.69
4322 14992 3.069443 GGTCATTTGAACTCCCTTGCAAA 59.931 43.478 0.00 0.00 35.07 3.68
4388 15061 2.777692 TGTCTTCCCTGAAACTTCACCT 59.222 45.455 0.00 0.00 32.90 4.00
4474 15147 2.158608 ACACTCTTTGTTAGCAGCCCTT 60.159 45.455 0.00 0.00 33.09 3.95
4482 15155 4.301072 TGTTAGCAGCCCTTTGATACTT 57.699 40.909 0.00 0.00 0.00 2.24
4578 15251 6.346040 CCGTTTCATTTGAAGAATCTGCAAAC 60.346 38.462 17.95 5.71 41.20 2.93
4608 15281 2.490115 CCTGCGGCACCTGTATTTAAAA 59.510 45.455 0.00 0.00 0.00 1.52
4977 15665 4.340097 TCATTAATTTGGATGCAGGCTCAG 59.660 41.667 0.00 0.00 0.00 3.35
5014 15702 1.757682 ACGTCCTCTGATGTCCTCTC 58.242 55.000 0.00 0.00 35.85 3.20
5020 15708 1.039785 TCTGATGTCCTCTCCGGCAG 61.040 60.000 0.00 0.00 0.00 4.85
5069 15757 1.008538 GCAACTGCAACTGGAACCG 60.009 57.895 0.00 0.00 41.59 4.44
5070 15758 1.724582 GCAACTGCAACTGGAACCGT 61.725 55.000 0.00 0.00 41.59 4.83
5071 15759 0.029300 CAACTGCAACTGGAACCGTG 59.971 55.000 0.00 0.00 0.00 4.94
5072 15760 1.724582 AACTGCAACTGGAACCGTGC 61.725 55.000 0.00 6.92 0.00 5.34
5073 15761 2.904866 TGCAACTGGAACCGTGCC 60.905 61.111 10.07 0.00 0.00 5.01
5074 15762 4.025401 GCAACTGGAACCGTGCCG 62.025 66.667 0.00 0.00 0.00 5.69
5075 15763 4.025401 CAACTGGAACCGTGCCGC 62.025 66.667 0.00 0.00 0.00 6.53
5109 15797 3.842923 CTCCGCTGGCGACCTCAT 61.843 66.667 16.79 0.00 42.83 2.90
5110 15798 3.781770 CTCCGCTGGCGACCTCATC 62.782 68.421 16.79 0.00 42.83 2.92
5120 15808 2.696893 ACCTCATCGGTAGGGCCT 59.303 61.111 12.58 12.58 46.73 5.19
5121 15809 1.457831 ACCTCATCGGTAGGGCCTC 60.458 63.158 10.74 1.12 46.73 4.70
5122 15810 1.152440 CCTCATCGGTAGGGCCTCT 60.152 63.158 10.74 0.00 34.25 3.69
5123 15811 1.467678 CCTCATCGGTAGGGCCTCTG 61.468 65.000 10.74 7.44 34.25 3.35
5124 15812 1.457643 TCATCGGTAGGGCCTCTGG 60.458 63.158 10.74 0.00 34.25 3.86
5125 15813 1.762460 CATCGGTAGGGCCTCTGGT 60.762 63.158 10.74 0.00 34.25 4.00
5126 15814 1.762460 ATCGGTAGGGCCTCTGGTG 60.762 63.158 10.74 0.00 34.25 4.17
5127 15815 4.162690 CGGTAGGGCCTCTGGTGC 62.163 72.222 10.74 0.00 34.25 5.01
5136 15824 4.803426 CTCTGGTGCCGCCGACTC 62.803 72.222 0.00 0.00 41.21 3.36
5140 15828 4.778143 GGTGCCGCCGACTCCATT 62.778 66.667 0.00 0.00 0.00 3.16
5141 15829 2.185867 GTGCCGCCGACTCCATTA 59.814 61.111 0.00 0.00 0.00 1.90
5142 15830 2.171725 GTGCCGCCGACTCCATTAC 61.172 63.158 0.00 0.00 0.00 1.89
5143 15831 2.588034 GCCGCCGACTCCATTACC 60.588 66.667 0.00 0.00 0.00 2.85
5144 15832 3.090219 GCCGCCGACTCCATTACCT 62.090 63.158 0.00 0.00 0.00 3.08
5145 15833 1.067582 CCGCCGACTCCATTACCTC 59.932 63.158 0.00 0.00 0.00 3.85
5146 15834 1.299165 CGCCGACTCCATTACCTCG 60.299 63.158 0.00 0.00 0.00 4.63
5147 15835 1.591863 GCCGACTCCATTACCTCGC 60.592 63.158 0.00 0.00 0.00 5.03
5148 15836 1.813859 CCGACTCCATTACCTCGCA 59.186 57.895 0.00 0.00 0.00 5.10
5149 15837 0.174845 CCGACTCCATTACCTCGCAA 59.825 55.000 0.00 0.00 0.00 4.85
5150 15838 1.404986 CCGACTCCATTACCTCGCAAA 60.405 52.381 0.00 0.00 0.00 3.68
5151 15839 1.659098 CGACTCCATTACCTCGCAAAC 59.341 52.381 0.00 0.00 0.00 2.93
5152 15840 2.007608 GACTCCATTACCTCGCAAACC 58.992 52.381 0.00 0.00 0.00 3.27
5153 15841 1.006832 CTCCATTACCTCGCAAACCG 58.993 55.000 0.00 0.00 38.61 4.44
5154 15842 0.609151 TCCATTACCTCGCAAACCGA 59.391 50.000 0.00 0.00 45.15 4.69
5155 15843 0.725117 CCATTACCTCGCAAACCGAC 59.275 55.000 0.00 0.00 41.89 4.79
5156 15844 0.368907 CATTACCTCGCAAACCGACG 59.631 55.000 0.00 0.00 41.89 5.12
5157 15845 0.244450 ATTACCTCGCAAACCGACGA 59.756 50.000 0.00 0.00 41.89 4.20
5158 15846 0.664166 TTACCTCGCAAACCGACGAC 60.664 55.000 0.00 0.00 41.89 4.34
5159 15847 2.476534 TACCTCGCAAACCGACGACC 62.477 60.000 0.00 0.00 41.89 4.79
5160 15848 2.355363 CTCGCAAACCGACGACCA 60.355 61.111 0.00 0.00 41.89 4.02
5161 15849 2.654912 CTCGCAAACCGACGACCAC 61.655 63.158 0.00 0.00 41.89 4.16
5162 15850 2.660552 CGCAAACCGACGACCACT 60.661 61.111 0.00 0.00 40.02 4.00
5163 15851 1.372004 CGCAAACCGACGACCACTA 60.372 57.895 0.00 0.00 40.02 2.74
5164 15852 1.342082 CGCAAACCGACGACCACTAG 61.342 60.000 0.00 0.00 40.02 2.57
5165 15853 0.319297 GCAAACCGACGACCACTAGT 60.319 55.000 0.00 0.00 0.00 2.57
5166 15854 1.694639 CAAACCGACGACCACTAGTC 58.305 55.000 0.00 0.00 42.54 2.59
5173 15861 4.711980 GACCACTAGTCGGATGCG 57.288 61.111 15.59 0.00 35.30 4.73
5174 15862 1.589196 GACCACTAGTCGGATGCGC 60.589 63.158 15.59 0.00 35.30 6.09
5175 15863 2.279502 GACCACTAGTCGGATGCGCA 62.280 60.000 14.96 14.96 35.30 6.09
5176 15864 1.589993 CCACTAGTCGGATGCGCAG 60.590 63.158 18.32 1.66 0.00 5.18
5190 15878 2.188994 GCAGCAGGAAGGCGAGAT 59.811 61.111 0.00 0.00 39.27 2.75
5191 15879 2.178890 GCAGCAGGAAGGCGAGATG 61.179 63.158 0.00 0.00 39.27 2.90
5192 15880 1.523258 CAGCAGGAAGGCGAGATGG 60.523 63.158 0.00 0.00 39.27 3.51
5193 15881 2.203126 GCAGGAAGGCGAGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
5194 15882 2.735772 GCAGGAAGGCGAGATGGGA 61.736 63.158 0.00 0.00 0.00 4.37
5195 15883 1.907739 CAGGAAGGCGAGATGGGAA 59.092 57.895 0.00 0.00 0.00 3.97
5196 15884 0.179062 CAGGAAGGCGAGATGGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
5197 15885 1.524849 GGAAGGCGAGATGGGAAGC 60.525 63.158 0.00 0.00 0.00 3.86
5198 15886 1.884926 GAAGGCGAGATGGGAAGCG 60.885 63.158 0.00 0.00 0.00 4.68
5199 15887 3.391665 AAGGCGAGATGGGAAGCGG 62.392 63.158 0.00 0.00 0.00 5.52
5202 15890 4.161295 CGAGATGGGAAGCGGCCA 62.161 66.667 2.24 0.00 0.00 5.36
5203 15891 2.514824 GAGATGGGAAGCGGCCAC 60.515 66.667 2.24 0.00 0.00 5.01
5204 15892 4.115199 AGATGGGAAGCGGCCACC 62.115 66.667 2.24 0.00 0.00 4.61
5232 15920 3.558411 GTGGCGATCTGCTGCGAC 61.558 66.667 8.94 0.00 45.43 5.19
5233 15921 4.067913 TGGCGATCTGCTGCGACA 62.068 61.111 8.94 0.00 44.33 4.35
5234 15922 3.558411 GGCGATCTGCTGCGACAC 61.558 66.667 8.94 0.00 45.43 3.67
5235 15923 2.810887 GCGATCTGCTGCGACACA 60.811 61.111 0.00 0.00 41.73 3.72
5236 15924 2.382746 GCGATCTGCTGCGACACAA 61.383 57.895 0.00 0.00 41.73 3.33
5237 15925 1.706301 CGATCTGCTGCGACACAAG 59.294 57.895 0.00 0.00 0.00 3.16
5238 15926 1.690283 CGATCTGCTGCGACACAAGG 61.690 60.000 0.00 0.00 0.00 3.61
5239 15927 0.390340 GATCTGCTGCGACACAAGGA 60.390 55.000 0.00 0.00 0.00 3.36
5240 15928 0.671781 ATCTGCTGCGACACAAGGAC 60.672 55.000 0.00 0.00 0.00 3.85
5241 15929 2.661537 TGCTGCGACACAAGGACG 60.662 61.111 0.00 0.00 0.00 4.79
5242 15930 3.414700 GCTGCGACACAAGGACGG 61.415 66.667 0.00 0.00 0.00 4.79
5243 15931 2.338620 CTGCGACACAAGGACGGA 59.661 61.111 0.00 0.00 0.00 4.69
5244 15932 1.734477 CTGCGACACAAGGACGGAG 60.734 63.158 0.00 0.00 38.81 4.63
5245 15933 2.142357 CTGCGACACAAGGACGGAGA 62.142 60.000 0.00 0.00 45.35 3.71
5246 15934 1.006571 GCGACACAAGGACGGAGAA 60.007 57.895 0.00 0.00 0.00 2.87
5247 15935 1.009389 GCGACACAAGGACGGAGAAG 61.009 60.000 0.00 0.00 0.00 2.85
5248 15936 1.009389 CGACACAAGGACGGAGAAGC 61.009 60.000 0.00 0.00 0.00 3.86
5249 15937 0.670854 GACACAAGGACGGAGAAGCC 60.671 60.000 0.00 0.00 0.00 4.35
5250 15938 1.371183 CACAAGGACGGAGAAGCCA 59.629 57.895 0.00 0.00 35.94 4.75
5251 15939 0.951040 CACAAGGACGGAGAAGCCAC 60.951 60.000 0.00 0.00 35.94 5.01
5252 15940 1.376037 CAAGGACGGAGAAGCCACC 60.376 63.158 0.00 0.00 35.94 4.61
5257 15945 4.697756 CGGAGAAGCCACCGCCAA 62.698 66.667 0.00 0.00 42.55 4.52
5258 15946 2.747855 GGAGAAGCCACCGCCAAG 60.748 66.667 0.00 0.00 36.34 3.61
5259 15947 2.347490 GAGAAGCCACCGCCAAGA 59.653 61.111 0.00 0.00 34.57 3.02
5260 15948 1.743252 GAGAAGCCACCGCCAAGAG 60.743 63.158 0.00 0.00 34.57 2.85
5261 15949 2.747855 GAAGCCACCGCCAAGAGG 60.748 66.667 0.00 0.00 34.57 3.69
5262 15950 3.249189 AAGCCACCGCCAAGAGGA 61.249 61.111 0.00 0.00 36.89 3.71
5263 15951 3.553095 AAGCCACCGCCAAGAGGAC 62.553 63.158 0.00 0.00 36.89 3.85
5265 15953 3.636231 CCACCGCCAAGAGGACCA 61.636 66.667 0.00 0.00 36.89 4.02
5285 15973 3.000819 TGACGCCCCAAGACCGAT 61.001 61.111 0.00 0.00 0.00 4.18
5297 15985 1.047596 AGACCGATGCTCCAGATGCT 61.048 55.000 0.00 0.00 0.00 3.79
5302 15990 1.474677 CGATGCTCCAGATGCTTTCCT 60.475 52.381 0.00 0.00 0.00 3.36
5320 16008 2.159448 TCCTTGTTTTGCGTGTCAGTTG 60.159 45.455 0.00 0.00 0.00 3.16
5390 16079 3.253955 GCACTCGTTGCCGTCATT 58.746 55.556 0.87 0.00 46.63 2.57
5391 16080 1.154413 GCACTCGTTGCCGTCATTG 60.154 57.895 0.87 0.00 46.63 2.82
5396 16085 2.098443 ACTCGTTGCCGTCATTGTTTTT 59.902 40.909 0.00 0.00 35.01 1.94
5411 16100 7.582319 GTCATTGTTTTTAAAACTTGCATTCGG 59.418 33.333 19.39 2.39 0.00 4.30
5431 16120 4.078516 GTAGTTGCCGCGTCCCCT 62.079 66.667 4.92 0.00 0.00 4.79
5440 16129 1.966451 CGCGTCCCCTCTTGCTTTT 60.966 57.895 0.00 0.00 0.00 2.27
5448 16137 1.001378 CCCTCTTGCTTTTGTTGACCG 60.001 52.381 0.00 0.00 0.00 4.79
5451 16140 3.363178 CTCTTGCTTTTGTTGACCGTTC 58.637 45.455 0.00 0.00 0.00 3.95
5453 16142 1.464734 TGCTTTTGTTGACCGTTCCA 58.535 45.000 0.00 0.00 0.00 3.53
5455 16144 2.159310 TGCTTTTGTTGACCGTTCCAAG 60.159 45.455 0.00 0.00 0.00 3.61
5457 16147 3.691498 CTTTTGTTGACCGTTCCAAGAC 58.309 45.455 0.00 0.00 0.00 3.01
5472 16170 3.699038 TCCAAGACCAACCTTGTTCTTTG 59.301 43.478 0.00 0.00 37.76 2.77
5473 16171 3.447229 CCAAGACCAACCTTGTTCTTTGT 59.553 43.478 0.00 0.00 37.76 2.83
5516 16214 4.402829 AGAGTCTCTCTGTAAAGTGCTCA 58.597 43.478 0.00 0.00 39.62 4.26
5517 16215 4.830046 AGAGTCTCTCTGTAAAGTGCTCAA 59.170 41.667 0.00 0.00 39.62 3.02
5519 16217 5.918608 AGTCTCTCTGTAAAGTGCTCAAAA 58.081 37.500 0.00 0.00 0.00 2.44
5525 16223 2.875933 TGTAAAGTGCTCAAAACCCTCG 59.124 45.455 0.00 0.00 0.00 4.63
5526 16224 0.668535 AAAGTGCTCAAAACCCTCGC 59.331 50.000 0.00 0.00 0.00 5.03
5528 16226 2.110213 TGCTCAAAACCCTCGCGT 59.890 55.556 5.77 0.00 0.00 6.01
5571 16270 0.463204 CTGACCCGCTCAGTCATCAT 59.537 55.000 1.45 0.00 43.04 2.45
5572 16271 0.904649 TGACCCGCTCAGTCATCATT 59.095 50.000 0.00 0.00 39.29 2.57
5593 16292 1.142870 GTTGGATTCGGATCATCCCCA 59.857 52.381 5.94 0.00 39.79 4.96
5596 16295 2.230660 GGATTCGGATCATCCCCAAAC 58.769 52.381 5.94 0.00 35.03 2.93
5598 16297 1.295020 TTCGGATCATCCCCAAACCT 58.705 50.000 0.00 0.00 31.13 3.50
5602 16301 1.570979 GGATCATCCCCAAACCTTCCT 59.429 52.381 0.00 0.00 0.00 3.36
5603 16302 2.783510 GGATCATCCCCAAACCTTCCTA 59.216 50.000 0.00 0.00 0.00 2.94
5607 16306 5.283876 TCATCCCCAAACCTTCCTAAAAT 57.716 39.130 0.00 0.00 0.00 1.82
5608 16307 6.410222 TCATCCCCAAACCTTCCTAAAATA 57.590 37.500 0.00 0.00 0.00 1.40
5609 16308 6.992235 TCATCCCCAAACCTTCCTAAAATAT 58.008 36.000 0.00 0.00 0.00 1.28
5611 16310 6.668133 TCCCCAAACCTTCCTAAAATATCT 57.332 37.500 0.00 0.00 0.00 1.98
5612 16311 6.669631 TCCCCAAACCTTCCTAAAATATCTC 58.330 40.000 0.00 0.00 0.00 2.75
5614 16313 7.036132 TCCCCAAACCTTCCTAAAATATCTCTT 60.036 37.037 0.00 0.00 0.00 2.85
5615 16314 7.619698 CCCCAAACCTTCCTAAAATATCTCTTT 59.380 37.037 0.00 0.00 0.00 2.52
5617 16316 9.025041 CCAAACCTTCCTAAAATATCTCTTTGT 57.975 33.333 0.00 0.00 0.00 2.83
5778 16486 3.402681 CCATCCACCCACTCGCCT 61.403 66.667 0.00 0.00 0.00 5.52
5779 16487 2.187946 CATCCACCCACTCGCCTC 59.812 66.667 0.00 0.00 0.00 4.70
5780 16488 3.461773 ATCCACCCACTCGCCTCG 61.462 66.667 0.00 0.00 0.00 4.63
5786 16494 4.379243 CCACTCGCCTCGCACCTT 62.379 66.667 0.00 0.00 0.00 3.50
5787 16495 3.114616 CACTCGCCTCGCACCTTG 61.115 66.667 0.00 0.00 0.00 3.61
5788 16496 4.379243 ACTCGCCTCGCACCTTGG 62.379 66.667 0.00 0.00 0.00 3.61
5791 16499 4.473520 CGCCTCGCACCTTGGGAT 62.474 66.667 0.00 0.00 38.67 3.85
5792 16500 2.514824 GCCTCGCACCTTGGGATC 60.515 66.667 0.00 0.00 38.67 3.36
5793 16501 2.190578 CCTCGCACCTTGGGATCC 59.809 66.667 1.92 1.92 38.67 3.36
5794 16502 2.370445 CCTCGCACCTTGGGATCCT 61.370 63.158 12.58 0.00 38.67 3.24
5795 16503 1.144936 CTCGCACCTTGGGATCCTC 59.855 63.158 12.58 2.25 38.67 3.71
5796 16504 2.190578 CGCACCTTGGGATCCTCC 59.809 66.667 12.58 0.00 35.23 4.30
5808 16516 1.284313 GATCCTCCCAGATCCATCCC 58.716 60.000 0.00 0.00 37.31 3.85
5809 16517 0.546267 ATCCTCCCAGATCCATCCCG 60.546 60.000 0.00 0.00 0.00 5.14
5810 16518 2.219875 CCTCCCAGATCCATCCCGG 61.220 68.421 0.00 0.00 0.00 5.73
5811 16519 2.122413 TCCCAGATCCATCCCGGG 60.122 66.667 16.85 16.85 39.97 5.73
5812 16520 3.958860 CCCAGATCCATCCCGGGC 61.959 72.222 18.49 0.00 34.42 6.13
5813 16521 3.958860 CCAGATCCATCCCGGGCC 61.959 72.222 18.49 0.00 34.36 5.80
5814 16522 3.170672 CAGATCCATCCCGGGCCA 61.171 66.667 18.49 0.00 34.36 5.36
5815 16523 2.368192 AGATCCATCCCGGGCCAA 60.368 61.111 18.49 0.00 34.36 4.52
5816 16524 2.203351 GATCCATCCCGGGCCAAC 60.203 66.667 18.49 0.63 34.36 3.77
5817 16525 3.792185 GATCCATCCCGGGCCAACC 62.792 68.421 18.49 0.00 34.36 3.77
5824 16532 4.047125 CCGGGCCAACCACCATCT 62.047 66.667 4.39 0.00 40.22 2.90
5825 16533 2.438434 CGGGCCAACCACCATCTC 60.438 66.667 4.39 0.00 40.22 2.75
5826 16534 2.043953 GGGCCAACCACCATCTCC 60.044 66.667 4.39 0.00 39.85 3.71
5827 16535 2.043953 GGCCAACCACCATCTCCC 60.044 66.667 0.00 0.00 35.26 4.30
5828 16536 2.043953 GCCAACCACCATCTCCCC 60.044 66.667 0.00 0.00 0.00 4.81
5829 16537 2.616458 GCCAACCACCATCTCCCCT 61.616 63.158 0.00 0.00 0.00 4.79
5830 16538 1.609783 CCAACCACCATCTCCCCTC 59.390 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.334421 GCCAATAGTCAGTGAATAGAAGAAACA 59.666 37.037 6.45 0.00 0.00 2.83
3 4 6.823689 GGCCAATAGTCAGTGAATAGAAGAAA 59.176 38.462 6.45 0.00 0.00 2.52
4 5 6.349300 GGCCAATAGTCAGTGAATAGAAGAA 58.651 40.000 6.45 0.00 0.00 2.52
5 6 5.163301 GGGCCAATAGTCAGTGAATAGAAGA 60.163 44.000 4.39 0.00 0.00 2.87
6 7 5.059833 GGGCCAATAGTCAGTGAATAGAAG 58.940 45.833 4.39 0.00 0.00 2.85
7 8 4.442893 CGGGCCAATAGTCAGTGAATAGAA 60.443 45.833 4.39 0.00 0.00 2.10
8 9 3.069586 CGGGCCAATAGTCAGTGAATAGA 59.930 47.826 4.39 0.00 0.00 1.98
9 10 3.393800 CGGGCCAATAGTCAGTGAATAG 58.606 50.000 4.39 0.00 0.00 1.73
10 11 2.484770 GCGGGCCAATAGTCAGTGAATA 60.485 50.000 4.39 2.28 0.00 1.75
11 12 1.747206 GCGGGCCAATAGTCAGTGAAT 60.747 52.381 4.39 0.00 0.00 2.57
12 13 0.392461 GCGGGCCAATAGTCAGTGAA 60.392 55.000 4.39 0.00 0.00 3.18
13 14 1.220749 GCGGGCCAATAGTCAGTGA 59.779 57.895 4.39 0.00 0.00 3.41
14 15 2.173669 CGCGGGCCAATAGTCAGTG 61.174 63.158 4.39 0.00 0.00 3.66
15 16 1.324740 TACGCGGGCCAATAGTCAGT 61.325 55.000 12.47 0.00 0.00 3.41
16 17 0.874607 GTACGCGGGCCAATAGTCAG 60.875 60.000 12.47 0.00 0.00 3.51
17 18 1.142314 GTACGCGGGCCAATAGTCA 59.858 57.895 12.47 0.00 0.00 3.41
18 19 1.593479 GGTACGCGGGCCAATAGTC 60.593 63.158 12.47 0.00 0.00 2.59
19 20 2.360767 TGGTACGCGGGCCAATAGT 61.361 57.895 19.18 0.79 0.00 2.12
20 21 1.885850 GTGGTACGCGGGCCAATAG 60.886 63.158 22.23 0.00 36.41 1.73
21 22 2.187424 GTGGTACGCGGGCCAATA 59.813 61.111 22.23 1.13 36.41 1.90
30 31 1.201647 TCTCAGCAGTTAGTGGTACGC 59.798 52.381 0.00 0.00 34.15 4.42
31 32 2.747989 TCTCTCAGCAGTTAGTGGTACG 59.252 50.000 0.00 0.00 34.15 3.67
32 33 4.993029 ATCTCTCAGCAGTTAGTGGTAC 57.007 45.455 0.00 0.00 34.15 3.34
33 34 6.606069 AGATATCTCTCAGCAGTTAGTGGTA 58.394 40.000 0.00 0.00 34.15 3.25
34 35 5.454062 AGATATCTCTCAGCAGTTAGTGGT 58.546 41.667 0.00 0.00 37.36 4.16
35 36 7.176515 ACATAGATATCTCTCAGCAGTTAGTGG 59.823 40.741 8.95 0.00 32.66 4.00
40 41 6.294675 GCTGACATAGATATCTCTCAGCAGTT 60.295 42.308 31.71 6.93 42.16 3.16
42 43 5.183522 TGCTGACATAGATATCTCTCAGCAG 59.816 44.000 33.51 24.49 44.44 4.24
52 53 6.238842 GCCAACAAACATGCTGACATAGATAT 60.239 38.462 2.54 0.00 33.67 1.63
98 99 1.200760 ATACACAGCTGACAGGCCCA 61.201 55.000 23.35 0.00 0.00 5.36
99 100 0.830648 TATACACAGCTGACAGGCCC 59.169 55.000 23.35 0.00 0.00 5.80
102 103 4.201950 GCCAAAATATACACAGCTGACAGG 60.202 45.833 23.35 9.22 0.00 4.00
110 111 4.260620 GCTGTACCGCCAAAATATACACAG 60.261 45.833 0.00 0.00 35.20 3.66
166 167 1.993956 AAACATGTGCAAGTGGCCTA 58.006 45.000 3.32 0.00 43.89 3.93
169 170 4.305769 TCAATAAAACATGTGCAAGTGGC 58.694 39.130 0.00 0.00 45.13 5.01
171 172 9.961266 CATTAATCAATAAAACATGTGCAAGTG 57.039 29.630 0.00 0.00 0.00 3.16
231 233 1.629043 TAACGCTGAGTTGGACTCCT 58.371 50.000 7.05 0.00 44.44 3.69
232 234 2.067013 GTTAACGCTGAGTTGGACTCC 58.933 52.381 7.05 0.00 44.44 3.85
263 265 5.788014 GGAAGATAACCCCAGATCTAATCCT 59.212 44.000 0.00 0.00 30.88 3.24
290 293 2.481289 AGTCTCCAAAAGTAGCAGGC 57.519 50.000 0.00 0.00 0.00 4.85
297 300 2.484889 GACGCAGAAGTCTCCAAAAGT 58.515 47.619 0.00 0.00 38.09 2.66
404 873 4.645136 TGATCTAGAAGCTTACACGGATGT 59.355 41.667 0.00 0.00 43.30 3.06
497 972 5.319453 AGGACAGATTTCTTGCATTCTTCA 58.681 37.500 0.00 0.00 0.00 3.02
506 981 4.553323 CAGCCAAAAGGACAGATTTCTTG 58.447 43.478 0.00 0.00 0.00 3.02
519 995 2.132740 TAGCAAAACGCAGCCAAAAG 57.867 45.000 0.00 0.00 46.13 2.27
529 1005 5.782255 ACGACGAGATAAATTAGCAAAACG 58.218 37.500 0.00 0.00 0.00 3.60
531 1007 6.369340 TGGAACGACGAGATAAATTAGCAAAA 59.631 34.615 0.00 0.00 0.00 2.44
628 1125 7.966339 TGGATTGATCTGAGGAAATGAAATT 57.034 32.000 0.00 0.00 38.98 1.82
668 1165 4.919754 GCAATAGAAGTGGACTGCTTTTTG 59.080 41.667 0.00 0.15 32.96 2.44
672 1169 2.350522 CGCAATAGAAGTGGACTGCTT 58.649 47.619 0.00 0.00 32.96 3.91
673 1170 2.009042 GCGCAATAGAAGTGGACTGCT 61.009 52.381 0.30 0.00 35.59 4.24
674 1171 0.375106 GCGCAATAGAAGTGGACTGC 59.625 55.000 0.30 0.00 0.00 4.40
735 1232 9.952030 TGTTCCTACTTTTGGATTTTTCTTTTT 57.048 25.926 0.00 0.00 33.09 1.94
736 1233 9.952030 TTGTTCCTACTTTTGGATTTTTCTTTT 57.048 25.926 0.00 0.00 33.09 2.27
744 1241 8.749354 GGACATAATTGTTCCTACTTTTGGATT 58.251 33.333 0.00 0.00 35.79 3.01
745 1242 7.342026 GGGACATAATTGTTCCTACTTTTGGAT 59.658 37.037 0.00 0.00 46.75 3.41
746 1243 6.661805 GGGACATAATTGTTCCTACTTTTGGA 59.338 38.462 0.00 0.00 46.75 3.53
747 1244 6.863275 GGGACATAATTGTTCCTACTTTTGG 58.137 40.000 0.00 0.00 46.75 3.28
756 1253 1.029681 GGGCGGGACATAATTGTTCC 58.970 55.000 0.00 0.00 46.80 3.62
757 1254 2.052782 AGGGCGGGACATAATTGTTC 57.947 50.000 0.00 0.00 35.79 3.18
758 1255 2.099405 CAAGGGCGGGACATAATTGTT 58.901 47.619 0.00 0.00 35.79 2.83
759 1256 1.005450 ACAAGGGCGGGACATAATTGT 59.995 47.619 0.00 0.00 39.32 2.71
760 1257 1.762708 ACAAGGGCGGGACATAATTG 58.237 50.000 0.00 0.00 0.00 2.32
761 1258 2.422377 GGTACAAGGGCGGGACATAATT 60.422 50.000 0.00 0.00 0.00 1.40
762 1259 1.142262 GGTACAAGGGCGGGACATAAT 59.858 52.381 0.00 0.00 0.00 1.28
763 1260 0.542805 GGTACAAGGGCGGGACATAA 59.457 55.000 0.00 0.00 0.00 1.90
764 1261 1.339644 GGGTACAAGGGCGGGACATA 61.340 60.000 0.00 0.00 0.00 2.29
765 1262 2.676265 GGGTACAAGGGCGGGACAT 61.676 63.158 0.00 0.00 0.00 3.06
766 1263 3.324108 GGGTACAAGGGCGGGACA 61.324 66.667 0.00 0.00 0.00 4.02
767 1264 4.105553 GGGGTACAAGGGCGGGAC 62.106 72.222 0.00 0.00 0.00 4.46
768 1265 2.474133 TTAGGGGTACAAGGGCGGGA 62.474 60.000 0.00 0.00 0.00 5.14
769 1266 1.564483 TTTAGGGGTACAAGGGCGGG 61.564 60.000 0.00 0.00 0.00 6.13
770 1267 0.549469 ATTTAGGGGTACAAGGGCGG 59.451 55.000 0.00 0.00 0.00 6.13
771 1268 3.564053 TTATTTAGGGGTACAAGGGCG 57.436 47.619 0.00 0.00 0.00 6.13
772 1269 4.400251 GTGTTTATTTAGGGGTACAAGGGC 59.600 45.833 0.00 0.00 0.00 5.19
773 1270 5.823312 AGTGTTTATTTAGGGGTACAAGGG 58.177 41.667 0.00 0.00 0.00 3.95
774 1271 6.943718 TGAAGTGTTTATTTAGGGGTACAAGG 59.056 38.462 0.00 0.00 0.00 3.61
775 1272 7.989416 TGAAGTGTTTATTTAGGGGTACAAG 57.011 36.000 0.00 0.00 0.00 3.16
776 1273 8.387813 AGATGAAGTGTTTATTTAGGGGTACAA 58.612 33.333 0.00 0.00 0.00 2.41
777 1274 7.924541 AGATGAAGTGTTTATTTAGGGGTACA 58.075 34.615 0.00 0.00 0.00 2.90
780 1517 6.217693 AGGAGATGAAGTGTTTATTTAGGGGT 59.782 38.462 0.00 0.00 0.00 4.95
786 1523 5.649831 GCAGGAGGAGATGAAGTGTTTATTT 59.350 40.000 0.00 0.00 0.00 1.40
814 1551 2.241176 GTGGGGGTAACTTGGATGATGA 59.759 50.000 0.00 0.00 0.00 2.92
817 1554 0.996583 GGTGGGGGTAACTTGGATGA 59.003 55.000 0.00 0.00 0.00 2.92
827 1564 0.694196 CTTTTCTTCGGGTGGGGGTA 59.306 55.000 0.00 0.00 0.00 3.69
919 1987 3.991773 GTGTAGTGCAAGGACACGAAATA 59.008 43.478 10.28 0.00 45.45 1.40
930 1998 5.078411 ACAGATCTTAGGTGTAGTGCAAG 57.922 43.478 0.00 0.00 0.00 4.01
933 2001 5.578005 TGTACAGATCTTAGGTGTAGTGC 57.422 43.478 0.00 0.00 0.00 4.40
968 2037 4.226168 AGTTTGTTTGGGATGTTTTTGGGA 59.774 37.500 0.00 0.00 0.00 4.37
1128 2199 0.035317 TCAGCTCGAACTGTGGCATT 59.965 50.000 15.10 0.00 38.84 3.56
1188 2259 3.588842 TGAGGTCTTGGATCCATTTGTCT 59.411 43.478 17.06 9.83 0.00 3.41
1240 2311 3.493176 CGGCTGTACTCATGATCATCCAA 60.493 47.826 4.86 0.00 0.00 3.53
1420 2494 0.387565 TCCTTGCCTTTCGCCAAAAC 59.612 50.000 0.00 0.00 36.24 2.43
1560 2655 4.750098 AGAAGGTCAATTATATTGTCGCGG 59.250 41.667 6.13 0.00 0.00 6.46
1802 2900 4.371624 TCAAGATTCTCAACATGTGGGT 57.628 40.909 0.00 0.00 0.00 4.51
1988 3089 8.982723 AGTAAAGAGAAGCTGGAAGTATATTCA 58.017 33.333 0.00 0.00 35.30 2.57
2123 3224 4.502016 CTTCTCTGCAATCACTTCTAGCA 58.498 43.478 0.00 0.00 0.00 3.49
2304 3411 3.273919 AGAAAACATCTCTGCAAACGC 57.726 42.857 0.00 0.00 30.46 4.84
2360 3467 1.168714 GTGAACCAACTCCCTCATGC 58.831 55.000 0.00 0.00 0.00 4.06
2492 3606 5.932303 ACATAGTATGTACGAAATCCATGGC 59.068 40.000 14.25 0.00 42.78 4.40
2586 3715 2.292267 CATGGTATGTCTGCCACCTTC 58.708 52.381 0.00 0.00 40.22 3.46
2598 9681 2.345876 TGTCGAACAGTGCATGGTATG 58.654 47.619 0.00 0.00 0.00 2.39
2735 9818 4.818546 ACTTGGAATTCCGCAATATCTCAG 59.181 41.667 19.57 5.12 39.43 3.35
2781 9867 3.750371 TGGCAACTTGCTACTGTTGTAT 58.250 40.909 13.43 0.00 44.28 2.29
2804 9890 4.895224 TGCTTCAGCTCATCAATTGATC 57.105 40.909 18.16 7.67 42.66 2.92
2920 10006 3.135994 TGTCGGGCAAACTCTTAACTTC 58.864 45.455 0.00 0.00 0.00 3.01
3077 12012 5.435291 ACTCATATCCCTTCTGCTTTTCTG 58.565 41.667 0.00 0.00 0.00 3.02
3078 12013 5.707066 ACTCATATCCCTTCTGCTTTTCT 57.293 39.130 0.00 0.00 0.00 2.52
3116 12051 1.503542 CCACCAAGCTCGTTCATGC 59.496 57.895 0.00 0.00 0.00 4.06
3209 12144 5.241506 CCTAGGTGCAAACTTTCAAGATGAA 59.758 40.000 0.00 0.00 34.03 2.57
3231 12166 4.234550 TGTCATCCATATAACTCCAGCCT 58.765 43.478 0.00 0.00 0.00 4.58
3331 12266 2.004583 TTCGCCGATCTGTAACCTTG 57.995 50.000 0.00 0.00 0.00 3.61
3456 12391 0.813821 GAAGTGAGCAGCAATTCCCC 59.186 55.000 8.12 0.00 43.75 4.81
3544 12480 5.435686 AATATAAGCAGTGGACACTTGGA 57.564 39.130 1.49 0.00 40.20 3.53
3664 12603 2.222213 TGTCGCGTGTTTTTGATACTGG 59.778 45.455 5.77 0.00 0.00 4.00
3681 12631 6.887368 TGAAAATTCCGATGCTATTATGTCG 58.113 36.000 0.00 0.00 0.00 4.35
3711 12661 2.502142 TCAATGCCATCAACTGCTCT 57.498 45.000 0.00 0.00 0.00 4.09
3777 12727 6.723298 TCCTCTATCACAAATTCCTCTCTC 57.277 41.667 0.00 0.00 0.00 3.20
4071 13042 2.571653 CCCTAATGACCTGAGACACCAA 59.428 50.000 0.00 0.00 0.00 3.67
4184 14852 8.028354 CACAGTAGAATATAATGAGCTCCTCAG 58.972 40.741 12.15 0.00 44.08 3.35
4206 14874 3.254166 AGAAATTAGCTGCAACCACACAG 59.746 43.478 1.02 0.00 36.96 3.66
4257 14927 0.602562 TGCAGCCAACCATGTTAAGC 59.397 50.000 0.00 0.00 0.00 3.09
4310 14980 6.543735 ACTAGTTCTAATTTTGCAAGGGAGT 58.456 36.000 0.00 0.00 0.00 3.85
4322 14992 6.850234 TCCGGGAGATCTACTAGTTCTAATT 58.150 40.000 4.57 0.00 0.00 1.40
4388 15061 5.867330 TCGGGACATCCTTTAAACTTACAA 58.133 37.500 0.00 0.00 35.95 2.41
4401 15074 1.084370 CGTTGAGCTTCGGGACATCC 61.084 60.000 0.00 0.00 0.00 3.51
4460 15133 4.301072 AGTATCAAAGGGCTGCTAACAA 57.699 40.909 0.00 0.00 0.00 2.83
4474 15147 5.109210 CGAGAGCATGTGGTTAAGTATCAA 58.891 41.667 0.00 0.00 0.00 2.57
4482 15155 4.932789 GCCGAGAGCATGTGGTTA 57.067 55.556 0.00 0.00 42.97 2.85
4608 15281 3.256631 GCAAGGACACCATTTCACATTCT 59.743 43.478 0.00 0.00 0.00 2.40
4849 15535 7.655732 ACTTACCTTTGCATTTATTTGTGGTTC 59.344 33.333 0.00 0.00 0.00 3.62
4853 15539 6.128580 GCCACTTACCTTTGCATTTATTTGTG 60.129 38.462 0.00 0.00 0.00 3.33
4977 15665 2.887568 CCGTGCGATCTGGCAGTC 60.888 66.667 15.27 10.34 44.93 3.51
5051 15739 1.008538 CGGTTCCAGTTGCAGTTGC 60.009 57.895 0.00 0.00 42.50 4.17
5052 15740 0.029300 CACGGTTCCAGTTGCAGTTG 59.971 55.000 0.00 0.00 0.00 3.16
5053 15741 1.724582 GCACGGTTCCAGTTGCAGTT 61.725 55.000 0.00 0.00 0.00 3.16
5054 15742 2.186826 GCACGGTTCCAGTTGCAGT 61.187 57.895 0.00 0.00 0.00 4.40
5055 15743 2.639286 GCACGGTTCCAGTTGCAG 59.361 61.111 0.00 0.00 0.00 4.41
5056 15744 2.904866 GGCACGGTTCCAGTTGCA 60.905 61.111 0.00 0.00 0.00 4.08
5092 15780 3.781770 GATGAGGTCGCCAGCGGAG 62.782 68.421 12.71 0.00 40.25 4.63
5093 15781 3.838271 GATGAGGTCGCCAGCGGA 61.838 66.667 12.71 0.00 40.25 5.54
5104 15792 1.152440 AGAGGCCCTACCGATGAGG 60.152 63.158 0.00 0.00 46.52 3.86
5105 15793 1.467678 CCAGAGGCCCTACCGATGAG 61.468 65.000 0.00 0.00 46.52 2.90
5106 15794 1.457643 CCAGAGGCCCTACCGATGA 60.458 63.158 0.00 0.00 46.52 2.92
5107 15795 1.762460 ACCAGAGGCCCTACCGATG 60.762 63.158 0.00 0.00 46.52 3.84
5108 15796 1.762460 CACCAGAGGCCCTACCGAT 60.762 63.158 0.00 0.00 46.52 4.18
5109 15797 2.363795 CACCAGAGGCCCTACCGA 60.364 66.667 0.00 0.00 46.52 4.69
5110 15798 4.162690 GCACCAGAGGCCCTACCG 62.163 72.222 0.00 0.00 46.52 4.02
5111 15799 3.798511 GGCACCAGAGGCCCTACC 61.799 72.222 0.00 0.00 45.87 3.18
5119 15807 4.803426 GAGTCGGCGGCACCAGAG 62.803 72.222 16.23 0.00 39.03 3.35
5123 15811 3.379865 TAATGGAGTCGGCGGCACC 62.380 63.158 21.20 21.20 0.00 5.01
5124 15812 2.171725 GTAATGGAGTCGGCGGCAC 61.172 63.158 16.23 7.51 0.00 5.01
5125 15813 2.185867 GTAATGGAGTCGGCGGCA 59.814 61.111 16.23 0.00 0.00 5.69
5126 15814 2.588034 GGTAATGGAGTCGGCGGC 60.588 66.667 1.71 1.71 0.00 6.53
5127 15815 1.067582 GAGGTAATGGAGTCGGCGG 59.932 63.158 7.21 0.00 0.00 6.13
5128 15816 1.299165 CGAGGTAATGGAGTCGGCG 60.299 63.158 0.00 0.00 0.00 6.46
5129 15817 1.591863 GCGAGGTAATGGAGTCGGC 60.592 63.158 0.00 0.00 32.99 5.54
5130 15818 0.174845 TTGCGAGGTAATGGAGTCGG 59.825 55.000 0.00 0.00 32.99 4.79
5131 15819 1.659098 GTTTGCGAGGTAATGGAGTCG 59.341 52.381 0.00 0.00 35.51 4.18
5132 15820 2.007608 GGTTTGCGAGGTAATGGAGTC 58.992 52.381 0.00 0.00 0.00 3.36
5133 15821 1.674817 CGGTTTGCGAGGTAATGGAGT 60.675 52.381 0.00 0.00 0.00 3.85
5134 15822 1.006832 CGGTTTGCGAGGTAATGGAG 58.993 55.000 0.00 0.00 0.00 3.86
5135 15823 0.609151 TCGGTTTGCGAGGTAATGGA 59.391 50.000 0.00 0.00 0.00 3.41
5136 15824 0.725117 GTCGGTTTGCGAGGTAATGG 59.275 55.000 0.00 0.00 0.00 3.16
5137 15825 0.368907 CGTCGGTTTGCGAGGTAATG 59.631 55.000 0.00 0.00 0.00 1.90
5138 15826 0.244450 TCGTCGGTTTGCGAGGTAAT 59.756 50.000 0.00 0.00 32.98 1.89
5139 15827 0.664166 GTCGTCGGTTTGCGAGGTAA 60.664 55.000 0.00 0.00 37.82 2.85
5140 15828 1.081242 GTCGTCGGTTTGCGAGGTA 60.081 57.895 0.00 0.00 37.82 3.08
5141 15829 2.355481 GTCGTCGGTTTGCGAGGT 60.355 61.111 0.00 0.00 37.82 3.85
5142 15830 3.110178 GGTCGTCGGTTTGCGAGG 61.110 66.667 0.00 0.00 37.82 4.63
5143 15831 2.355363 TGGTCGTCGGTTTGCGAG 60.355 61.111 0.00 0.00 37.82 5.03
5144 15832 1.794151 TAGTGGTCGTCGGTTTGCGA 61.794 55.000 0.00 0.00 34.54 5.10
5145 15833 1.342082 CTAGTGGTCGTCGGTTTGCG 61.342 60.000 0.00 0.00 0.00 4.85
5146 15834 0.319297 ACTAGTGGTCGTCGGTTTGC 60.319 55.000 0.00 0.00 0.00 3.68
5147 15835 1.694639 GACTAGTGGTCGTCGGTTTG 58.305 55.000 0.00 0.00 35.07 2.93
5156 15844 1.589196 GCGCATCCGACTAGTGGTC 60.589 63.158 0.30 0.00 41.28 4.02
5157 15845 2.284798 CTGCGCATCCGACTAGTGGT 62.285 60.000 12.24 0.00 36.29 4.16
5158 15846 1.589993 CTGCGCATCCGACTAGTGG 60.590 63.158 12.24 0.00 36.29 4.00
5159 15847 2.233654 GCTGCGCATCCGACTAGTG 61.234 63.158 12.24 0.00 36.29 2.74
5160 15848 2.105128 GCTGCGCATCCGACTAGT 59.895 61.111 12.24 0.00 36.29 2.57
5161 15849 1.948138 CTGCTGCGCATCCGACTAG 60.948 63.158 12.24 0.00 38.13 2.57
5162 15850 2.104928 CTGCTGCGCATCCGACTA 59.895 61.111 12.24 0.00 38.13 2.59
5163 15851 4.827087 CCTGCTGCGCATCCGACT 62.827 66.667 12.24 0.00 38.13 4.18
5164 15852 4.819761 TCCTGCTGCGCATCCGAC 62.820 66.667 12.24 0.00 38.13 4.79
5165 15853 4.081185 TTCCTGCTGCGCATCCGA 62.081 61.111 12.24 1.72 38.13 4.55
5166 15854 3.570638 CTTCCTGCTGCGCATCCG 61.571 66.667 12.24 2.30 38.13 4.18
5167 15855 3.207669 CCTTCCTGCTGCGCATCC 61.208 66.667 12.24 5.81 38.13 3.51
5168 15856 3.885521 GCCTTCCTGCTGCGCATC 61.886 66.667 12.24 7.67 38.13 3.91
5173 15861 2.178890 CATCTCGCCTTCCTGCTGC 61.179 63.158 0.00 0.00 0.00 5.25
5174 15862 1.523258 CCATCTCGCCTTCCTGCTG 60.523 63.158 0.00 0.00 0.00 4.41
5175 15863 2.739996 CCCATCTCGCCTTCCTGCT 61.740 63.158 0.00 0.00 0.00 4.24
5176 15864 2.203126 CCCATCTCGCCTTCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
5177 15865 0.179062 CTTCCCATCTCGCCTTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
5178 15866 1.977293 GCTTCCCATCTCGCCTTCCT 61.977 60.000 0.00 0.00 0.00 3.36
5179 15867 1.524849 GCTTCCCATCTCGCCTTCC 60.525 63.158 0.00 0.00 0.00 3.46
5180 15868 1.884926 CGCTTCCCATCTCGCCTTC 60.885 63.158 0.00 0.00 0.00 3.46
5181 15869 2.187946 CGCTTCCCATCTCGCCTT 59.812 61.111 0.00 0.00 0.00 4.35
5182 15870 3.854669 CCGCTTCCCATCTCGCCT 61.855 66.667 0.00 0.00 0.00 5.52
5185 15873 4.161295 TGGCCGCTTCCCATCTCG 62.161 66.667 0.00 0.00 0.00 4.04
5186 15874 2.514824 GTGGCCGCTTCCCATCTC 60.515 66.667 9.68 0.00 34.34 2.75
5187 15875 4.115199 GGTGGCCGCTTCCCATCT 62.115 66.667 17.49 0.00 34.34 2.90
5215 15903 3.558411 GTCGCAGCAGATCGCCAC 61.558 66.667 6.02 0.00 44.04 5.01
5216 15904 4.067913 TGTCGCAGCAGATCGCCA 62.068 61.111 6.02 0.00 44.04 5.69
5217 15905 3.558411 GTGTCGCAGCAGATCGCC 61.558 66.667 6.02 0.00 44.04 5.54
5218 15906 2.288926 CTTGTGTCGCAGCAGATCGC 62.289 60.000 0.00 1.92 42.91 4.58
5219 15907 1.690283 CCTTGTGTCGCAGCAGATCG 61.690 60.000 0.00 0.00 0.00 3.69
5220 15908 0.390340 TCCTTGTGTCGCAGCAGATC 60.390 55.000 0.00 0.00 0.00 2.75
5221 15909 0.671781 GTCCTTGTGTCGCAGCAGAT 60.672 55.000 0.00 0.00 0.00 2.90
5222 15910 1.300931 GTCCTTGTGTCGCAGCAGA 60.301 57.895 0.00 0.00 0.00 4.26
5223 15911 2.661566 CGTCCTTGTGTCGCAGCAG 61.662 63.158 0.00 0.00 0.00 4.24
5224 15912 2.661537 CGTCCTTGTGTCGCAGCA 60.662 61.111 0.00 0.00 0.00 4.41
5225 15913 3.414700 CCGTCCTTGTGTCGCAGC 61.415 66.667 0.00 0.00 0.00 5.25
5226 15914 1.734477 CTCCGTCCTTGTGTCGCAG 60.734 63.158 0.00 0.00 0.00 5.18
5227 15915 1.740332 TTCTCCGTCCTTGTGTCGCA 61.740 55.000 0.00 0.00 0.00 5.10
5228 15916 1.006571 TTCTCCGTCCTTGTGTCGC 60.007 57.895 0.00 0.00 0.00 5.19
5229 15917 1.009389 GCTTCTCCGTCCTTGTGTCG 61.009 60.000 0.00 0.00 0.00 4.35
5230 15918 0.670854 GGCTTCTCCGTCCTTGTGTC 60.671 60.000 0.00 0.00 0.00 3.67
5231 15919 1.371558 GGCTTCTCCGTCCTTGTGT 59.628 57.895 0.00 0.00 0.00 3.72
5232 15920 0.951040 GTGGCTTCTCCGTCCTTGTG 60.951 60.000 0.00 0.00 37.80 3.33
5233 15921 1.371558 GTGGCTTCTCCGTCCTTGT 59.628 57.895 0.00 0.00 37.80 3.16
5234 15922 1.376037 GGTGGCTTCTCCGTCCTTG 60.376 63.158 0.00 0.00 37.80 3.61
5235 15923 2.943978 CGGTGGCTTCTCCGTCCTT 61.944 63.158 0.00 0.00 41.17 3.36
5236 15924 3.382832 CGGTGGCTTCTCCGTCCT 61.383 66.667 0.00 0.00 41.17 3.85
5240 15928 4.697756 TTGGCGGTGGCTTCTCCG 62.698 66.667 0.00 0.00 46.68 4.63
5241 15929 2.747855 CTTGGCGGTGGCTTCTCC 60.748 66.667 0.00 0.00 39.81 3.71
5242 15930 1.743252 CTCTTGGCGGTGGCTTCTC 60.743 63.158 0.00 0.00 39.81 2.87
5243 15931 2.348998 CTCTTGGCGGTGGCTTCT 59.651 61.111 0.00 0.00 39.81 2.85
5244 15932 2.747855 CCTCTTGGCGGTGGCTTC 60.748 66.667 0.00 0.00 39.81 3.86
5245 15933 3.249189 TCCTCTTGGCGGTGGCTT 61.249 61.111 0.00 0.00 39.81 4.35
5246 15934 4.021925 GTCCTCTTGGCGGTGGCT 62.022 66.667 0.00 0.00 39.81 4.75
5248 15936 2.971598 ATGGTCCTCTTGGCGGTGG 61.972 63.158 0.00 0.00 0.00 4.61
5249 15937 1.746615 CATGGTCCTCTTGGCGGTG 60.747 63.158 0.00 0.00 0.00 4.94
5250 15938 2.224159 ACATGGTCCTCTTGGCGGT 61.224 57.895 0.00 0.00 0.00 5.68
5251 15939 1.746615 CACATGGTCCTCTTGGCGG 60.747 63.158 0.00 0.00 0.00 6.13
5252 15940 1.021390 GTCACATGGTCCTCTTGGCG 61.021 60.000 0.00 0.00 0.00 5.69
5253 15941 1.021390 CGTCACATGGTCCTCTTGGC 61.021 60.000 0.00 0.00 0.00 4.52
5254 15942 1.021390 GCGTCACATGGTCCTCTTGG 61.021 60.000 0.00 0.00 0.00 3.61
5255 15943 1.021390 GGCGTCACATGGTCCTCTTG 61.021 60.000 0.00 0.00 0.00 3.02
5256 15944 1.296715 GGCGTCACATGGTCCTCTT 59.703 57.895 0.00 0.00 0.00 2.85
5257 15945 2.660064 GGGCGTCACATGGTCCTCT 61.660 63.158 0.00 0.00 0.00 3.69
5258 15946 2.125106 GGGCGTCACATGGTCCTC 60.125 66.667 0.00 0.00 0.00 3.71
5259 15947 3.717294 GGGGCGTCACATGGTCCT 61.717 66.667 0.00 0.00 0.00 3.85
5260 15948 3.561120 TTGGGGCGTCACATGGTCC 62.561 63.158 0.00 0.00 0.00 4.46
5261 15949 2.033448 TTGGGGCGTCACATGGTC 59.967 61.111 0.00 0.00 0.00 4.02
5262 15950 2.034066 CTTGGGGCGTCACATGGT 59.966 61.111 0.00 0.00 0.00 3.55
5263 15951 2.040544 GTCTTGGGGCGTCACATGG 61.041 63.158 5.22 0.00 0.00 3.66
5264 15952 2.040544 GGTCTTGGGGCGTCACATG 61.041 63.158 0.00 0.00 0.00 3.21
5265 15953 2.351276 GGTCTTGGGGCGTCACAT 59.649 61.111 0.00 0.00 0.00 3.21
5285 15973 1.074405 ACAAGGAAAGCATCTGGAGCA 59.926 47.619 0.00 0.00 0.00 4.26
5297 15985 2.490115 ACTGACACGCAAAACAAGGAAA 59.510 40.909 0.00 0.00 0.00 3.13
5302 15990 2.030717 ACACAACTGACACGCAAAACAA 60.031 40.909 0.00 0.00 0.00 2.83
5346 16034 2.750712 CAATGCGGATGATGCCATGATA 59.249 45.455 0.00 0.00 32.09 2.15
5352 16040 0.388134 GATGCAATGCGGATGATGCC 60.388 55.000 10.56 0.00 38.00 4.40
5390 16079 5.230306 CGACCGAATGCAAGTTTTAAAAACA 59.770 36.000 1.31 0.00 0.00 2.83
5391 16080 5.230516 ACGACCGAATGCAAGTTTTAAAAAC 59.769 36.000 1.31 0.00 0.00 2.43
5396 16085 4.309099 ACTACGACCGAATGCAAGTTTTA 58.691 39.130 0.00 0.00 0.00 1.52
5411 16100 3.177249 GGACGCGGCAACTACGAC 61.177 66.667 17.00 0.00 37.50 4.34
5431 16120 2.098443 GGAACGGTCAACAAAAGCAAGA 59.902 45.455 1.31 0.00 0.00 3.02
5440 16129 0.542333 TGGTCTTGGAACGGTCAACA 59.458 50.000 1.31 0.00 0.00 3.33
5448 16137 3.710326 GAACAAGGTTGGTCTTGGAAC 57.290 47.619 0.24 0.00 46.04 3.62
5478 16176 1.494721 ACTCTGGTTTTGGCAAGAGGA 59.505 47.619 15.50 3.79 40.11 3.71
5494 16192 4.402829 TGAGCACTTTACAGAGAGACTCT 58.597 43.478 4.14 4.14 42.11 3.24
5506 16204 1.877443 GCGAGGGTTTTGAGCACTTTA 59.123 47.619 0.00 0.00 0.00 1.85
5510 16208 2.251642 ACGCGAGGGTTTTGAGCAC 61.252 57.895 15.93 0.00 0.00 4.40
5514 16212 3.342627 CGCACGCGAGGGTTTTGA 61.343 61.111 15.93 0.00 42.83 2.69
5571 16270 2.422803 GGGGATGATCCGAATCCAACAA 60.423 50.000 5.22 0.00 44.71 2.83
5572 16271 1.142870 GGGGATGATCCGAATCCAACA 59.857 52.381 5.22 0.00 44.71 3.33
5596 16295 9.243105 TCCAAACAAAGAGATATTTTAGGAAGG 57.757 33.333 0.00 0.00 0.00 3.46
5598 16297 9.807921 AGTCCAAACAAAGAGATATTTTAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
5602 16301 9.020731 GGGAAGTCCAAACAAAGAGATATTTTA 57.979 33.333 0.00 0.00 37.91 1.52
5603 16302 7.730332 AGGGAAGTCCAAACAAAGAGATATTTT 59.270 33.333 0.00 0.00 38.24 1.82
5607 16306 5.843019 AGGGAAGTCCAAACAAAGAGATA 57.157 39.130 0.00 0.00 38.24 1.98
5608 16307 4.731313 AGGGAAGTCCAAACAAAGAGAT 57.269 40.909 0.00 0.00 38.24 2.75
5609 16308 4.505039 GCTAGGGAAGTCCAAACAAAGAGA 60.505 45.833 0.00 0.00 38.24 3.10
5611 16310 3.497942 GGCTAGGGAAGTCCAAACAAAGA 60.498 47.826 0.00 0.00 38.24 2.52
5612 16311 2.820197 GGCTAGGGAAGTCCAAACAAAG 59.180 50.000 0.00 0.00 38.24 2.77
5614 16313 1.777878 TGGCTAGGGAAGTCCAAACAA 59.222 47.619 0.00 0.00 38.24 2.83
5615 16314 1.440618 TGGCTAGGGAAGTCCAAACA 58.559 50.000 0.00 0.00 38.24 2.83
5617 16316 5.466127 AAATATGGCTAGGGAAGTCCAAA 57.534 39.130 0.00 0.00 35.76 3.28
5778 16486 3.309582 GAGGATCCCAAGGTGCGA 58.690 61.111 8.55 0.00 0.00 5.10
5789 16497 1.284313 GGGATGGATCTGGGAGGATC 58.716 60.000 0.00 0.00 40.78 3.36
5790 16498 0.546267 CGGGATGGATCTGGGAGGAT 60.546 60.000 0.00 0.00 0.00 3.24
5791 16499 1.152247 CGGGATGGATCTGGGAGGA 60.152 63.158 0.00 0.00 0.00 3.71
5792 16500 2.219875 CCGGGATGGATCTGGGAGG 61.220 68.421 0.00 0.00 42.00 4.30
5793 16501 2.219875 CCCGGGATGGATCTGGGAG 61.220 68.421 18.48 0.00 41.76 4.30
5794 16502 2.122413 CCCGGGATGGATCTGGGA 60.122 66.667 18.48 0.00 41.76 4.37
5795 16503 3.958860 GCCCGGGATGGATCTGGG 61.959 72.222 29.31 11.17 42.00 4.45
5796 16504 3.958860 GGCCCGGGATGGATCTGG 61.959 72.222 29.31 0.00 42.00 3.86
5797 16505 2.756042 TTGGCCCGGGATGGATCTG 61.756 63.158 29.31 0.00 42.00 2.90
5798 16506 2.368192 TTGGCCCGGGATGGATCT 60.368 61.111 29.31 0.00 42.00 2.75
5799 16507 2.203351 GTTGGCCCGGGATGGATC 60.203 66.667 29.31 4.43 42.00 3.36
5800 16508 3.820843 GGTTGGCCCGGGATGGAT 61.821 66.667 29.31 0.00 42.00 3.41
5807 16515 3.995506 GAGATGGTGGTTGGCCCGG 62.996 68.421 0.00 0.00 35.15 5.73
5808 16516 2.438434 GAGATGGTGGTTGGCCCG 60.438 66.667 0.00 0.00 35.15 6.13
5809 16517 2.043953 GGAGATGGTGGTTGGCCC 60.044 66.667 0.00 0.00 0.00 5.80
5810 16518 2.043953 GGGAGATGGTGGTTGGCC 60.044 66.667 0.00 0.00 0.00 5.36
5811 16519 2.043953 GGGGAGATGGTGGTTGGC 60.044 66.667 0.00 0.00 0.00 4.52
5812 16520 1.609783 GAGGGGAGATGGTGGTTGG 59.390 63.158 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.