Multiple sequence alignment - TraesCS1D01G385500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G385500 chr1D 100.000 4628 0 0 1 4628 458809251 458804624 0.000000e+00 8547.0
1 TraesCS1D01G385500 chr1D 95.542 830 34 2 26 855 251724251 251725077 0.000000e+00 1325.0
2 TraesCS1D01G385500 chr1D 95.349 129 5 1 4234 4362 458802539 458802666 2.180000e-48 204.0
3 TraesCS1D01G385500 chr1D 96.639 119 4 0 4234 4352 118575086 118575204 1.020000e-46 198.0
4 TraesCS1D01G385500 chr1D 96.639 119 4 0 4234 4352 118578642 118578524 1.020000e-46 198.0
5 TraesCS1D01G385500 chr1A 95.608 2846 103 9 877 3714 551281270 551278439 0.000000e+00 4543.0
6 TraesCS1D01G385500 chr1A 96.350 274 9 1 4356 4628 127296968 127296695 2.540000e-122 449.0
7 TraesCS1D01G385500 chr1A 96.532 173 6 0 3708 3880 493207981 493208153 2.110000e-73 287.0
8 TraesCS1D01G385500 chr1A 91.613 155 13 0 3173 3327 551232767 551232613 1.010000e-51 215.0
9 TraesCS1D01G385500 chr1A 98.936 94 1 0 3081 3174 551232983 551232890 7.960000e-38 169.0
10 TraesCS1D01G385500 chr1A 84.444 180 16 10 3874 4042 551278442 551278264 2.860000e-37 167.0
11 TraesCS1D01G385500 chr1B 88.807 1501 113 32 958 2443 630703265 630701805 0.000000e+00 1790.0
12 TraesCS1D01G385500 chr1B 93.357 843 54 1 2872 3714 630701483 630700643 0.000000e+00 1245.0
13 TraesCS1D01G385500 chr1B 85.308 211 21 7 2624 2830 630701691 630701487 4.690000e-50 209.0
14 TraesCS1D01G385500 chr1B 83.616 177 19 8 3874 4042 630700646 630700472 1.720000e-34 158.0
15 TraesCS1D01G385500 chr1B 89.189 111 6 1 3081 3185 630690419 630690309 2.910000e-27 134.0
16 TraesCS1D01G385500 chr7D 95.783 830 32 2 26 855 83146777 83145951 0.000000e+00 1336.0
17 TraesCS1D01G385500 chr7D 95.422 830 35 2 26 855 617929953 617929127 0.000000e+00 1319.0
18 TraesCS1D01G385500 chr7D 97.445 274 6 1 4356 4628 405192210 405191937 2.520000e-127 466.0
19 TraesCS1D01G385500 chr7D 97.093 172 5 0 3711 3882 56399806 56399635 1.630000e-74 291.0
20 TraesCS1D01G385500 chr7D 90.551 127 12 0 4042 4168 525768131 525768005 7.960000e-38 169.0
21 TraesCS1D01G385500 chr7D 86.364 154 12 5 4055 4199 296501229 296501076 4.790000e-35 159.0
22 TraesCS1D01G385500 chr4D 95.783 830 32 2 26 855 484328135 484327309 0.000000e+00 1336.0
23 TraesCS1D01G385500 chr4D 97.445 274 6 1 4356 4628 115128008 115127735 2.520000e-127 466.0
24 TraesCS1D01G385500 chr4D 97.080 274 7 1 4356 4628 504104620 504104347 1.170000e-125 460.0
25 TraesCS1D01G385500 chr4D 98.214 168 3 0 3708 3875 93336851 93336684 1.260000e-75 294.0
26 TraesCS1D01G385500 chr4D 85.350 157 16 6 4044 4196 63251482 63251329 6.200000e-34 156.0
27 TraesCS1D01G385500 chr4D 90.816 98 8 1 3129 3225 146028349 146028252 3.760000e-26 130.0
28 TraesCS1D01G385500 chr4D 91.566 83 7 0 1603 1685 462618149 462618231 1.050000e-21 115.0
29 TraesCS1D01G385500 chr2D 95.783 830 31 3 26 855 545101141 545100316 0.000000e+00 1336.0
30 TraesCS1D01G385500 chr2D 95.537 829 34 2 27 855 633934375 633935200 0.000000e+00 1323.0
31 TraesCS1D01G385500 chr2D 97.080 274 7 1 4356 4628 240221853 240222126 1.170000e-125 460.0
32 TraesCS1D01G385500 chr2D 96.715 274 8 1 4356 4628 136751311 136751038 5.460000e-124 455.0
33 TraesCS1D01G385500 chr2D 87.546 273 28 3 2971 3242 538959578 538959311 1.250000e-80 311.0
34 TraesCS1D01G385500 chr2D 93.798 129 8 0 4224 4352 136753633 136753505 1.310000e-45 195.0
35 TraesCS1D01G385500 chr2D 85.542 166 15 6 4042 4198 81004755 81004920 1.030000e-36 165.0
36 TraesCS1D01G385500 chr2D 84.393 173 17 7 4041 4204 362930805 362930976 1.330000e-35 161.0
37 TraesCS1D01G385500 chr6D 95.542 830 33 3 26 855 391340156 391340981 0.000000e+00 1325.0
38 TraesCS1D01G385500 chr6D 86.813 273 28 5 2971 3242 42091850 42091585 9.730000e-77 298.0
39 TraesCS1D01G385500 chr6D 95.000 180 8 1 3708 3886 27494654 27494475 9.800000e-72 281.0
40 TraesCS1D01G385500 chr5D 95.542 830 33 3 26 855 370799659 370800484 0.000000e+00 1325.0
41 TraesCS1D01G385500 chr5D 95.422 830 34 3 26 855 348518534 348519359 0.000000e+00 1319.0
42 TraesCS1D01G385500 chr5D 97.810 274 5 1 4356 4628 520903266 520903539 5.420000e-129 472.0
43 TraesCS1D01G385500 chr5D 97.701 174 4 0 3703 3876 42949552 42949725 2.710000e-77 300.0
44 TraesCS1D01G385500 chr5D 99.394 165 1 0 3711 3875 460392860 460393024 2.710000e-77 300.0
45 TraesCS1D01G385500 chr5D 96.571 175 5 1 3703 3877 5112179 5112352 5.860000e-74 289.0
46 TraesCS1D01G385500 chr5D 93.846 130 7 1 4224 4352 520899315 520899444 1.310000e-45 195.0
47 TraesCS1D01G385500 chr5D 84.848 165 16 5 4044 4199 53583238 53583074 1.720000e-34 158.0
48 TraesCS1D01G385500 chr3A 96.654 269 8 1 4361 4628 206094329 206094061 3.290000e-121 446.0
49 TraesCS1D01G385500 chr3A 93.023 129 8 1 4234 4362 513527072 513527199 2.200000e-43 187.0
50 TraesCS1D01G385500 chr5A 95.985 274 10 1 4356 4628 111561740 111561467 1.180000e-120 444.0
51 TraesCS1D01G385500 chr5A 93.023 129 8 1 4234 4362 111559409 111559536 2.200000e-43 187.0
52 TraesCS1D01G385500 chr3D 97.633 169 4 0 3708 3876 556140975 556141143 1.630000e-74 291.0
53 TraesCS1D01G385500 chr3D 97.076 171 4 1 3709 3879 450884457 450884626 2.110000e-73 287.0
54 TraesCS1D01G385500 chr2B 94.262 122 7 0 4233 4354 335418289 335418168 2.200000e-43 187.0
55 TraesCS1D01G385500 chr2B 91.200 125 11 0 4044 4168 727714951 727715075 2.210000e-38 171.0
56 TraesCS1D01G385500 chr2B 84.242 165 19 6 4042 4199 709625955 709626119 2.230000e-33 154.0
57 TraesCS1D01G385500 chr5B 92.366 131 9 1 4235 4365 538577664 538577535 7.910000e-43 185.0
58 TraesCS1D01G385500 chrUn 85.976 164 15 4 4044 4199 116287317 116287154 7.960000e-38 169.0
59 TraesCS1D01G385500 chr4A 85.714 161 17 4 4044 4198 250740970 250741130 1.030000e-36 165.0
60 TraesCS1D01G385500 chr4A 100.000 28 0 0 1 28 11177519 11177546 8.000000e-03 52.8
61 TraesCS1D01G385500 chr7B 80.526 190 20 11 4042 4217 349324608 349324422 3.760000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G385500 chr1D 458804624 458809251 4627 True 8547.0 8547 100.0000 1 4628 1 chr1D.!!$R2 4627
1 TraesCS1D01G385500 chr1D 251724251 251725077 826 False 1325.0 1325 95.5420 26 855 1 chr1D.!!$F2 829
2 TraesCS1D01G385500 chr1A 551278264 551281270 3006 True 2355.0 4543 90.0260 877 4042 2 chr1A.!!$R3 3165
3 TraesCS1D01G385500 chr1B 630700472 630703265 2793 True 850.5 1790 87.7720 958 4042 4 chr1B.!!$R2 3084
4 TraesCS1D01G385500 chr7D 83145951 83146777 826 True 1336.0 1336 95.7830 26 855 1 chr7D.!!$R2 829
5 TraesCS1D01G385500 chr7D 617929127 617929953 826 True 1319.0 1319 95.4220 26 855 1 chr7D.!!$R6 829
6 TraesCS1D01G385500 chr4D 484327309 484328135 826 True 1336.0 1336 95.7830 26 855 1 chr4D.!!$R5 829
7 TraesCS1D01G385500 chr2D 545100316 545101141 825 True 1336.0 1336 95.7830 26 855 1 chr2D.!!$R2 829
8 TraesCS1D01G385500 chr2D 633934375 633935200 825 False 1323.0 1323 95.5370 27 855 1 chr2D.!!$F4 828
9 TraesCS1D01G385500 chr2D 136751038 136753633 2595 True 325.0 455 95.2565 4224 4628 2 chr2D.!!$R3 404
10 TraesCS1D01G385500 chr6D 391340156 391340981 825 False 1325.0 1325 95.5420 26 855 1 chr6D.!!$F1 829
11 TraesCS1D01G385500 chr5D 370799659 370800484 825 False 1325.0 1325 95.5420 26 855 1 chr5D.!!$F4 829
12 TraesCS1D01G385500 chr5D 348518534 348519359 825 False 1319.0 1319 95.4220 26 855 1 chr5D.!!$F3 829
13 TraesCS1D01G385500 chr5D 520899315 520903539 4224 False 333.5 472 95.8280 4224 4628 2 chr5D.!!$F6 404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 900 1.156736 AACACACGGCTGAATGCTAC 58.843 50.0 0.00 0.0 42.39 3.58 F
2355 2369 0.109723 AGCGCCTTTTGGACACCTTA 59.890 50.0 2.29 0.0 44.07 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2672 2695 1.005748 TGAGGCAACAGTCAGAGCG 60.006 57.895 0.0 0.0 41.41 5.03 R
3857 3887 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.0 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.334435 ACTCATAATGCAAATCGTCATCG 57.666 39.130 0.00 0.00 38.55 3.84
77 78 9.914131 CCACATATTCTACGAAGATCTTTATCA 57.086 33.333 9.87 0.00 34.28 2.15
420 421 3.744426 ACGTTTGATAGCACACAAGGTAC 59.256 43.478 0.00 0.00 0.00 3.34
613 614 7.554118 CACATGTCTATGGTCAGGAAACTTAAT 59.446 37.037 0.00 0.00 37.29 1.40
858 859 9.647797 TTACAATGTAATGATTCTAACACGAGT 57.352 29.630 1.08 0.00 0.00 4.18
859 860 8.547967 ACAATGTAATGATTCTAACACGAGTT 57.452 30.769 3.19 3.19 41.74 3.01
860 861 9.647797 ACAATGTAATGATTCTAACACGAGTTA 57.352 29.630 5.33 5.33 39.15 2.24
867 868 8.786826 ATGATTCTAACACGAGTTAATTTGGA 57.213 30.769 6.89 0.00 39.58 3.53
868 869 8.786826 TGATTCTAACACGAGTTAATTTGGAT 57.213 30.769 6.89 0.00 39.58 3.41
869 870 9.226606 TGATTCTAACACGAGTTAATTTGGATT 57.773 29.630 6.89 0.00 39.58 3.01
872 873 9.672086 TTCTAACACGAGTTAATTTGGATTTTG 57.328 29.630 6.89 0.00 39.58 2.44
873 874 9.058174 TCTAACACGAGTTAATTTGGATTTTGA 57.942 29.630 6.89 0.00 39.58 2.69
874 875 9.672086 CTAACACGAGTTAATTTGGATTTTGAA 57.328 29.630 6.89 0.00 39.58 2.69
875 876 8.934507 AACACGAGTTAATTTGGATTTTGAAA 57.065 26.923 0.00 0.00 35.85 2.69
876 877 8.934507 ACACGAGTTAATTTGGATTTTGAAAA 57.065 26.923 0.00 0.00 0.00 2.29
877 878 9.372369 ACACGAGTTAATTTGGATTTTGAAAAA 57.628 25.926 0.00 0.00 0.00 1.94
896 897 1.851658 AAAAACACACGGCTGAATGC 58.148 45.000 0.00 0.00 41.94 3.56
899 900 1.156736 AACACACGGCTGAATGCTAC 58.843 50.000 0.00 0.00 42.39 3.58
906 907 4.154195 ACACGGCTGAATGCTACTTAAAAG 59.846 41.667 0.00 0.00 42.39 2.27
924 925 9.030301 ACTTAAAAGTCAATTTGGATTTTGTCG 57.970 29.630 16.24 10.15 32.86 4.35
926 927 3.913089 AGTCAATTTGGATTTTGTCGCC 58.087 40.909 0.00 0.00 0.00 5.54
927 928 3.320541 AGTCAATTTGGATTTTGTCGCCA 59.679 39.130 0.00 0.00 0.00 5.69
928 929 4.021192 AGTCAATTTGGATTTTGTCGCCAT 60.021 37.500 0.00 0.00 0.00 4.40
929 930 4.690280 GTCAATTTGGATTTTGTCGCCATT 59.310 37.500 0.00 0.00 0.00 3.16
1693 1697 4.284550 TGCCCAACCAGACCCAGC 62.285 66.667 0.00 0.00 0.00 4.85
1755 1759 1.134699 CCCACGCATGTGTCTGTCTAT 60.135 52.381 9.44 0.00 44.92 1.98
1758 1762 3.451526 CACGCATGTGTCTGTCTATGAT 58.548 45.455 9.44 0.00 41.34 2.45
1767 1771 5.128335 TGTGTCTGTCTATGATCTGCAGATT 59.872 40.000 29.26 17.43 38.28 2.40
1799 1803 2.102925 CCAAGTTTGGGCAAATGTGAGT 59.897 45.455 2.87 0.00 44.70 3.41
1802 1806 4.486125 AGTTTGGGCAAATGTGAGTTTT 57.514 36.364 0.00 0.00 32.36 2.43
1815 1819 9.559958 CAAATGTGAGTTTTATTCTGTCCATAC 57.440 33.333 0.00 0.00 0.00 2.39
1852 1856 6.861065 TCCCTATCTTGAAAACATTATCGC 57.139 37.500 0.00 0.00 0.00 4.58
1980 1989 5.700373 ACAAGTGTTGTTTTGATTTGCACTT 59.300 32.000 0.00 0.00 42.22 3.16
2036 2045 5.503002 TGGAAAGGGGCTACTTGTATTAAC 58.497 41.667 0.00 0.00 0.00 2.01
2123 2132 2.634600 TGTAGAACACCACCACACAAC 58.365 47.619 0.00 0.00 0.00 3.32
2125 2134 2.435372 AGAACACCACCACACAACAT 57.565 45.000 0.00 0.00 0.00 2.71
2187 2201 8.862325 TGTTATCCTGCTTTTAGATTTTGAGA 57.138 30.769 0.00 0.00 0.00 3.27
2200 2214 9.559732 TTTAGATTTTGAGAATTCTGTGACTCA 57.440 29.630 14.00 0.24 37.56 3.41
2216 2230 2.485814 GACTCAGGAATTCAGGCAACAC 59.514 50.000 7.93 0.00 41.41 3.32
2271 2285 2.292267 GACCAGCACAACATATGAGGG 58.708 52.381 10.38 3.72 0.00 4.30
2355 2369 0.109723 AGCGCCTTTTGGACACCTTA 59.890 50.000 2.29 0.00 44.07 2.69
2412 2427 4.197498 GGCATCGTGGCACCATGC 62.197 66.667 33.24 33.24 43.14 4.06
2456 2471 6.824305 TTTTCCTCTTTGATTCTGATCACC 57.176 37.500 0.00 0.00 41.84 4.02
2503 2518 1.956297 CGGTAAAACTGGTGTCCACA 58.044 50.000 0.00 0.00 0.00 4.17
2617 2640 6.791303 TGCCCTTTTCATCGTATTCATTTAC 58.209 36.000 0.00 0.00 0.00 2.01
2751 2774 6.974932 TCAGTCTTCTTATTGAACTCATGC 57.025 37.500 0.00 0.00 0.00 4.06
2791 2815 7.433680 AGTTAAAAGGCTTAACTGGATTTGTG 58.566 34.615 13.25 0.00 41.94 3.33
2794 2818 5.453567 AAGGCTTAACTGGATTTGTGTTC 57.546 39.130 0.00 0.00 0.00 3.18
2969 2993 7.230108 CCTTAAATATGTGTCAGATTGATGCCT 59.770 37.037 0.00 0.00 0.00 4.75
2976 3000 4.749099 GTGTCAGATTGATGCCTATCTCAC 59.251 45.833 0.00 0.00 33.63 3.51
2982 3006 6.424509 CAGATTGATGCCTATCTCACTCTTTC 59.575 42.308 0.00 0.00 33.63 2.62
2988 3012 6.352016 TGCCTATCTCACTCTTTCCATATC 57.648 41.667 0.00 0.00 0.00 1.63
3069 3093 6.195613 CGAACTTCTACAAGATAGCTTCGAAG 59.804 42.308 21.02 21.02 36.73 3.79
3239 3263 1.969923 CTCTAGGCCCAGAGGAATGAG 59.030 57.143 19.57 1.45 38.74 2.90
3249 3273 1.405821 AGAGGAATGAGGAACTACGCG 59.594 52.381 3.53 3.53 41.55 6.01
3267 3291 1.826385 CGGATTGGGTTCAGAAGCTT 58.174 50.000 12.07 0.00 0.00 3.74
3276 3300 2.548067 GGTTCAGAAGCTTGAAGACGGA 60.548 50.000 2.10 0.00 37.72 4.69
3298 3322 1.877576 CTGGTGCCACGAGTCTAGCA 61.878 60.000 0.00 0.00 0.00 3.49
3309 3333 2.566913 GAGTCTAGCATCTCCGAGACA 58.433 52.381 0.00 0.00 40.67 3.41
3342 3366 0.668535 TGGACTCGGTGATGCTATCG 59.331 55.000 0.00 0.00 0.00 2.92
3398 3422 6.207614 AGTTTCAGTAAATCTTTTGGAGAGGC 59.792 38.462 0.00 0.00 37.93 4.70
3447 3471 1.494721 AGGCCTTTTGTTGAGAGTGGA 59.505 47.619 0.00 0.00 0.00 4.02
3498 3522 1.200948 GCCCTGCAGTTCAATGAGTTC 59.799 52.381 13.81 0.00 0.00 3.01
3511 3535 4.931601 TCAATGAGTTCGAGTCAGATTTGG 59.068 41.667 5.85 0.00 29.98 3.28
3512 3536 4.808414 ATGAGTTCGAGTCAGATTTGGA 57.192 40.909 5.85 0.00 29.98 3.53
3513 3537 4.600692 TGAGTTCGAGTCAGATTTGGAA 57.399 40.909 0.00 0.00 0.00 3.53
3514 3538 4.956085 TGAGTTCGAGTCAGATTTGGAAA 58.044 39.130 0.00 0.00 0.00 3.13
3515 3539 4.991056 TGAGTTCGAGTCAGATTTGGAAAG 59.009 41.667 0.00 0.00 0.00 2.62
3516 3540 3.748568 AGTTCGAGTCAGATTTGGAAAGC 59.251 43.478 0.00 0.00 0.00 3.51
3541 3571 0.041684 TGAGATGAGTGGGAGCAGGA 59.958 55.000 0.00 0.00 0.00 3.86
3567 3597 1.606601 CCTCCGTCTGAGTGACCCA 60.607 63.158 0.00 0.00 42.49 4.51
3669 3699 6.497437 TCGCATTGATAATTCCACATTCTTG 58.503 36.000 0.00 0.00 0.00 3.02
3710 3740 9.725019 TCTGACAAAATTGACACTTACTGATAT 57.275 29.630 0.00 0.00 0.00 1.63
3716 3746 9.614792 AAAATTGACACTTACTGATATACTCCC 57.385 33.333 0.00 0.00 0.00 4.30
3717 3747 8.554490 AATTGACACTTACTGATATACTCCCT 57.446 34.615 0.00 0.00 0.00 4.20
3718 3748 7.584122 TTGACACTTACTGATATACTCCCTC 57.416 40.000 0.00 0.00 0.00 4.30
3719 3749 6.069331 TGACACTTACTGATATACTCCCTCC 58.931 44.000 0.00 0.00 0.00 4.30
3720 3750 5.071370 ACACTTACTGATATACTCCCTCCG 58.929 45.833 0.00 0.00 0.00 4.63
3721 3751 5.071370 CACTTACTGATATACTCCCTCCGT 58.929 45.833 0.00 0.00 0.00 4.69
3722 3752 5.535406 CACTTACTGATATACTCCCTCCGTT 59.465 44.000 0.00 0.00 0.00 4.44
3723 3753 5.769162 ACTTACTGATATACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
3724 3754 3.498334 ACTGATATACTCCCTCCGTTCC 58.502 50.000 0.00 0.00 0.00 3.62
3725 3755 3.140519 ACTGATATACTCCCTCCGTTCCT 59.859 47.826 0.00 0.00 0.00 3.36
3726 3756 4.353191 ACTGATATACTCCCTCCGTTCCTA 59.647 45.833 0.00 0.00 0.00 2.94
3727 3757 5.163012 ACTGATATACTCCCTCCGTTCCTAA 60.163 44.000 0.00 0.00 0.00 2.69
3728 3758 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
3729 3759 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
3730 3760 7.472741 TGATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
3731 3761 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
3732 3762 9.638176 GATATACTCCCTCCGTTCCTAAATATA 57.362 37.037 0.00 0.00 0.00 0.86
3734 3764 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3735 3765 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3736 3766 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3737 3767 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3738 3768 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3739 3769 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3740 3770 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3741 3771 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3758 3788 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
3759 3789 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
3764 3794 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
3765 3795 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
3766 3796 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
3767 3797 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
3768 3798 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
3769 3799 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
3770 3800 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
3771 3801 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
3772 3802 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
3773 3803 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
3775 3805 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
3776 3806 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
3791 3821 7.962964 ACGGATGTATGTAGACATATTTTGG 57.037 36.000 5.69 0.21 40.18 3.28
3792 3822 7.732025 ACGGATGTATGTAGACATATTTTGGA 58.268 34.615 5.69 0.00 40.18 3.53
3793 3823 7.872993 ACGGATGTATGTAGACATATTTTGGAG 59.127 37.037 5.69 0.00 40.18 3.86
3794 3824 7.872993 CGGATGTATGTAGACATATTTTGGAGT 59.127 37.037 5.69 0.00 40.18 3.85
3795 3825 8.993121 GGATGTATGTAGACATATTTTGGAGTG 58.007 37.037 5.69 0.00 40.18 3.51
3796 3826 9.547753 GATGTATGTAGACATATTTTGGAGTGT 57.452 33.333 5.69 0.00 40.18 3.55
3802 3832 9.817809 TGTAGACATATTTTGGAGTGTAGATTC 57.182 33.333 0.00 0.00 0.00 2.52
3803 3833 9.817809 GTAGACATATTTTGGAGTGTAGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
3804 3834 8.723942 AGACATATTTTGGAGTGTAGATTCAC 57.276 34.615 0.00 0.00 38.46 3.18
3815 3845 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3816 3846 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3817 3847 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3818 3848 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3819 3849 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3820 3850 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3821 3851 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3822 3852 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3823 3853 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3824 3854 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3825 3855 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3826 3856 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3827 3857 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3828 3858 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3829 3859 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3830 3860 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3831 3861 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3832 3862 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3833 3863 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3834 3864 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3835 3865 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
3836 3866 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
3837 3867 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
3838 3868 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
3839 3869 6.153170 TCCGTATGTAGTCACTTGTTGGAATA 59.847 38.462 0.00 0.00 0.00 1.75
3840 3870 6.984474 CCGTATGTAGTCACTTGTTGGAATAT 59.016 38.462 0.00 0.00 0.00 1.28
3841 3871 7.169308 CCGTATGTAGTCACTTGTTGGAATATC 59.831 40.741 0.00 0.00 0.00 1.63
3842 3872 7.921214 CGTATGTAGTCACTTGTTGGAATATCT 59.079 37.037 0.00 0.00 0.00 1.98
3845 3875 8.589701 TGTAGTCACTTGTTGGAATATCTAGA 57.410 34.615 0.00 0.00 0.00 2.43
3846 3876 9.031537 TGTAGTCACTTGTTGGAATATCTAGAA 57.968 33.333 0.00 0.00 0.00 2.10
3847 3877 9.871238 GTAGTCACTTGTTGGAATATCTAGAAA 57.129 33.333 0.00 0.00 0.00 2.52
3849 3879 8.816894 AGTCACTTGTTGGAATATCTAGAAAGA 58.183 33.333 0.00 0.00 35.80 2.52
3850 3880 8.874816 GTCACTTGTTGGAATATCTAGAAAGAC 58.125 37.037 0.00 0.00 33.57 3.01
3851 3881 8.816894 TCACTTGTTGGAATATCTAGAAAGACT 58.183 33.333 0.00 0.00 33.57 3.24
3852 3882 9.442047 CACTTGTTGGAATATCTAGAAAGACTT 57.558 33.333 0.00 0.00 33.57 3.01
3865 3895 9.765795 ATCTAGAAAGACTTATATTTGGGAACG 57.234 33.333 0.00 0.00 33.57 3.95
3866 3896 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3867 3897 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
3868 3898 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
3869 3899 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
3870 3900 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
3871 3901 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
3872 3902 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
3908 3938 3.996921 GATCACTGGGATCCATAGCAT 57.003 47.619 15.23 6.99 45.58 3.79
3946 3983 4.712051 ATTATTCAGCCAGCACCTATCA 57.288 40.909 0.00 0.00 0.00 2.15
3962 3999 2.717580 ATCAGTGCGTTTACGAGACA 57.282 45.000 6.44 0.00 43.02 3.41
4001 4039 4.859798 TGAATTTAAATTTAACTGGGCGCG 59.140 37.500 14.45 0.00 0.00 6.86
4003 4041 3.474693 TTAAATTTAACTGGGCGCGTC 57.525 42.857 8.43 4.38 0.00 5.19
4004 4042 1.530323 AAATTTAACTGGGCGCGTCT 58.470 45.000 11.94 0.00 0.00 4.18
4005 4043 1.084289 AATTTAACTGGGCGCGTCTC 58.916 50.000 11.94 1.28 0.00 3.36
4006 4044 0.743345 ATTTAACTGGGCGCGTCTCC 60.743 55.000 11.94 9.55 0.00 3.71
4020 4061 1.001706 CGTCTCCGTCAGTTGAGTTCA 60.002 52.381 0.00 0.00 0.00 3.18
4024 4065 1.478916 TCCGTCAGTTGAGTTCACACA 59.521 47.619 0.00 0.00 0.00 3.72
4048 4089 6.641169 TCCTGAGATGATGATGTGTACTAC 57.359 41.667 0.00 0.00 0.00 2.73
4049 4090 5.536538 TCCTGAGATGATGATGTGTACTACC 59.463 44.000 0.00 0.00 0.00 3.18
4050 4091 5.538053 CCTGAGATGATGATGTGTACTACCT 59.462 44.000 0.00 0.00 0.00 3.08
4051 4092 6.294453 CCTGAGATGATGATGTGTACTACCTC 60.294 46.154 0.00 0.00 0.00 3.85
4052 4093 5.536538 TGAGATGATGATGTGTACTACCTCC 59.463 44.000 0.00 0.00 0.00 4.30
4053 4094 4.520874 AGATGATGATGTGTACTACCTCCG 59.479 45.833 0.00 0.00 0.00 4.63
4054 4095 2.956333 TGATGATGTGTACTACCTCCGG 59.044 50.000 0.00 0.00 0.00 5.14
4055 4096 2.519771 TGATGTGTACTACCTCCGGT 57.480 50.000 0.00 0.00 40.16 5.28
4056 4097 2.811410 TGATGTGTACTACCTCCGGTT 58.189 47.619 0.00 0.00 37.09 4.44
4057 4098 2.756760 TGATGTGTACTACCTCCGGTTC 59.243 50.000 0.00 0.00 37.09 3.62
4058 4099 2.592102 TGTGTACTACCTCCGGTTCT 57.408 50.000 0.00 0.00 37.09 3.01
4059 4100 3.719268 TGTGTACTACCTCCGGTTCTA 57.281 47.619 0.00 0.00 37.09 2.10
4060 4101 4.032960 TGTGTACTACCTCCGGTTCTAA 57.967 45.455 0.00 0.00 37.09 2.10
4061 4102 4.406456 TGTGTACTACCTCCGGTTCTAAA 58.594 43.478 0.00 0.00 37.09 1.85
4062 4103 5.018809 TGTGTACTACCTCCGGTTCTAAAT 58.981 41.667 0.00 0.00 37.09 1.40
4063 4104 6.186957 TGTGTACTACCTCCGGTTCTAAATA 58.813 40.000 0.00 0.00 37.09 1.40
4064 4105 6.835488 TGTGTACTACCTCCGGTTCTAAATAT 59.165 38.462 0.00 0.00 37.09 1.28
4065 4106 7.998383 TGTGTACTACCTCCGGTTCTAAATATA 59.002 37.037 0.00 0.00 37.09 0.86
4066 4107 8.850156 GTGTACTACCTCCGGTTCTAAATATAA 58.150 37.037 0.00 0.00 37.09 0.98
4067 4108 9.071276 TGTACTACCTCCGGTTCTAAATATAAG 57.929 37.037 0.00 0.00 37.09 1.73
4068 4109 9.072375 GTACTACCTCCGGTTCTAAATATAAGT 57.928 37.037 0.00 0.00 37.09 2.24
4069 4110 8.175925 ACTACCTCCGGTTCTAAATATAAGTC 57.824 38.462 0.00 0.00 37.09 3.01
4070 4111 8.003629 ACTACCTCCGGTTCTAAATATAAGTCT 58.996 37.037 0.00 0.00 37.09 3.24
4071 4112 7.672122 ACCTCCGGTTCTAAATATAAGTCTT 57.328 36.000 0.00 0.00 27.29 3.01
4072 4113 8.087303 ACCTCCGGTTCTAAATATAAGTCTTT 57.913 34.615 0.00 0.00 27.29 2.52
4073 4114 8.202811 ACCTCCGGTTCTAAATATAAGTCTTTC 58.797 37.037 0.00 0.00 27.29 2.62
4074 4115 8.422566 CCTCCGGTTCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
4091 4132 9.653516 AAGTCTTTCTAGAGATCTCAATATGGA 57.346 33.333 24.39 8.44 0.00 3.41
4092 4133 9.077885 AGTCTTTCTAGAGATCTCAATATGGAC 57.922 37.037 24.39 21.06 0.00 4.02
4093 4134 9.077885 GTCTTTCTAGAGATCTCAATATGGACT 57.922 37.037 24.39 3.15 0.00 3.85
4096 4137 9.868160 TTTCTAGAGATCTCAATATGGACTACA 57.132 33.333 24.39 0.00 0.00 2.74
4100 4141 8.275015 AGAGATCTCAATATGGACTACATACG 57.725 38.462 24.39 0.00 44.41 3.06
4101 4142 7.338196 AGAGATCTCAATATGGACTACATACGG 59.662 40.741 24.39 0.00 44.41 4.02
4102 4143 7.175797 AGATCTCAATATGGACTACATACGGA 58.824 38.462 0.00 0.00 44.41 4.69
4103 4144 6.819397 TCTCAATATGGACTACATACGGAG 57.181 41.667 0.00 0.00 44.41 4.63
4104 4145 5.183331 TCTCAATATGGACTACATACGGAGC 59.817 44.000 6.29 0.00 44.41 4.70
4105 4146 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
4106 4147 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
4107 4148 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4108 4149 4.689612 ATGGACTACATACGGAGCAAAT 57.310 40.909 0.00 0.00 38.26 2.32
4109 4150 4.481368 TGGACTACATACGGAGCAAATT 57.519 40.909 0.00 0.00 0.00 1.82
4110 4151 4.188462 TGGACTACATACGGAGCAAATTG 58.812 43.478 0.00 0.00 0.00 2.32
4111 4152 3.002348 GGACTACATACGGAGCAAATTGC 59.998 47.826 10.41 10.41 45.46 3.56
4123 4164 2.839474 GCAAATTGCGTGACTCTACAC 58.161 47.619 0.90 0.00 37.42 2.90
4124 4165 2.480419 GCAAATTGCGTGACTCTACACT 59.520 45.455 0.90 0.00 38.47 3.55
4125 4166 3.423645 GCAAATTGCGTGACTCTACACTC 60.424 47.826 0.90 0.00 38.47 3.51
4126 4167 3.944055 AATTGCGTGACTCTACACTCT 57.056 42.857 0.00 0.00 38.47 3.24
4127 4168 5.161358 CAAATTGCGTGACTCTACACTCTA 58.839 41.667 0.00 0.00 38.47 2.43
4128 4169 5.386958 AATTGCGTGACTCTACACTCTAA 57.613 39.130 0.00 0.00 38.47 2.10
4129 4170 4.841443 TTGCGTGACTCTACACTCTAAA 57.159 40.909 0.00 0.00 38.47 1.85
4130 4171 4.156664 TGCGTGACTCTACACTCTAAAC 57.843 45.455 0.00 0.00 38.47 2.01
4131 4172 3.819337 TGCGTGACTCTACACTCTAAACT 59.181 43.478 0.00 0.00 38.47 2.66
4132 4173 4.999311 TGCGTGACTCTACACTCTAAACTA 59.001 41.667 0.00 0.00 38.47 2.24
4133 4174 5.106791 TGCGTGACTCTACACTCTAAACTAC 60.107 44.000 0.00 0.00 38.47 2.73
4134 4175 5.549159 CGTGACTCTACACTCTAAACTACG 58.451 45.833 0.00 0.00 38.47 3.51
4135 4176 5.119898 CGTGACTCTACACTCTAAACTACGT 59.880 44.000 0.00 0.00 38.47 3.57
4136 4177 6.533185 GTGACTCTACACTCTAAACTACGTC 58.467 44.000 0.00 0.00 37.73 4.34
4137 4178 6.368516 GTGACTCTACACTCTAAACTACGTCT 59.631 42.308 0.00 0.00 37.73 4.18
4138 4179 7.543868 GTGACTCTACACTCTAAACTACGTCTA 59.456 40.741 0.00 0.00 37.73 2.59
4139 4180 8.256605 TGACTCTACACTCTAAACTACGTCTAT 58.743 37.037 0.00 0.00 0.00 1.98
4140 4181 9.743057 GACTCTACACTCTAAACTACGTCTATA 57.257 37.037 0.00 0.00 0.00 1.31
4191 4232 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
4192 4233 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
4193 4234 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
4194 4235 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4195 4236 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4196 4237 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
4197 4238 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
4198 4239 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
4199 4240 1.558233 AGGAACGGAGGGAGTAGTTG 58.442 55.000 0.00 0.00 0.00 3.16
4200 4241 1.203149 AGGAACGGAGGGAGTAGTTGT 60.203 52.381 0.00 0.00 0.00 3.32
4201 4242 1.067071 GGAACGGAGGGAGTAGTTGTG 60.067 57.143 0.00 0.00 0.00 3.33
4202 4243 0.320697 AACGGAGGGAGTAGTTGTGC 59.679 55.000 0.00 0.00 0.00 4.57
4203 4244 0.830444 ACGGAGGGAGTAGTTGTGCA 60.830 55.000 0.00 0.00 0.00 4.57
4204 4245 0.389948 CGGAGGGAGTAGTTGTGCAC 60.390 60.000 10.75 10.75 0.00 4.57
4205 4246 0.977395 GGAGGGAGTAGTTGTGCACT 59.023 55.000 19.41 0.00 39.87 4.40
4206 4247 2.176889 GGAGGGAGTAGTTGTGCACTA 58.823 52.381 19.41 7.83 36.88 2.74
4207 4248 2.766828 GGAGGGAGTAGTTGTGCACTAT 59.233 50.000 19.41 6.33 40.29 2.12
4208 4249 3.958798 GGAGGGAGTAGTTGTGCACTATA 59.041 47.826 19.41 5.30 40.29 1.31
4209 4250 4.202131 GGAGGGAGTAGTTGTGCACTATAC 60.202 50.000 19.41 16.59 40.29 1.47
4210 4251 4.611367 AGGGAGTAGTTGTGCACTATACT 58.389 43.478 19.41 20.61 40.29 2.12
4211 4252 5.763355 AGGGAGTAGTTGTGCACTATACTA 58.237 41.667 19.41 18.12 40.29 1.82
4212 4253 5.593502 AGGGAGTAGTTGTGCACTATACTAC 59.406 44.000 29.59 29.59 40.29 2.73
4213 4254 5.221204 GGGAGTAGTTGTGCACTATACTACC 60.221 48.000 31.18 29.44 42.35 3.18
4214 4255 5.593502 GGAGTAGTTGTGCACTATACTACCT 59.406 44.000 31.18 24.29 42.35 3.08
4215 4256 6.452494 AGTAGTTGTGCACTATACTACCTG 57.548 41.667 31.18 0.00 42.35 4.00
4216 4257 4.124851 AGTTGTGCACTATACTACCTGC 57.875 45.455 19.41 0.00 31.97 4.85
4217 4258 3.118738 AGTTGTGCACTATACTACCTGCC 60.119 47.826 19.41 0.00 31.97 4.85
4218 4259 1.407618 TGTGCACTATACTACCTGCCG 59.592 52.381 19.41 0.00 0.00 5.69
4219 4260 1.679680 GTGCACTATACTACCTGCCGA 59.320 52.381 10.32 0.00 0.00 5.54
4220 4261 1.954382 TGCACTATACTACCTGCCGAG 59.046 52.381 0.00 0.00 0.00 4.63
4221 4262 1.269998 GCACTATACTACCTGCCGAGG 59.730 57.143 0.00 0.00 46.21 4.63
4222 4263 1.887198 CACTATACTACCTGCCGAGGG 59.113 57.143 0.00 0.00 44.84 4.30
4223 4264 1.498145 ACTATACTACCTGCCGAGGGT 59.502 52.381 0.00 0.00 44.84 4.34
4224 4265 2.091444 ACTATACTACCTGCCGAGGGTT 60.091 50.000 0.00 0.00 44.84 4.11
4225 4266 1.875488 ATACTACCTGCCGAGGGTTT 58.125 50.000 0.00 0.00 44.84 3.27
4226 4267 1.648116 TACTACCTGCCGAGGGTTTT 58.352 50.000 0.00 0.00 44.84 2.43
4227 4268 1.648116 ACTACCTGCCGAGGGTTTTA 58.352 50.000 0.00 0.00 44.84 1.52
4228 4269 2.193993 ACTACCTGCCGAGGGTTTTAT 58.806 47.619 0.00 0.00 44.84 1.40
4229 4270 2.574824 ACTACCTGCCGAGGGTTTTATT 59.425 45.455 0.00 0.00 44.84 1.40
4230 4271 2.597578 ACCTGCCGAGGGTTTTATTT 57.402 45.000 0.00 0.00 44.84 1.40
4231 4272 2.884320 ACCTGCCGAGGGTTTTATTTT 58.116 42.857 0.00 0.00 44.84 1.82
4232 4273 2.560981 ACCTGCCGAGGGTTTTATTTTG 59.439 45.455 0.00 0.00 44.84 2.44
4271 4312 1.795286 GTCACTGAACTTGCGAAGAGG 59.205 52.381 3.37 0.00 0.00 3.69
4277 4318 0.326264 AACTTGCGAAGAGGGCTCAT 59.674 50.000 3.37 0.00 0.00 2.90
4310 4351 7.656137 CACTGTACTTAGAAATACGGCCAATAT 59.344 37.037 2.24 0.00 31.87 1.28
4324 4365 3.561143 GCCAATATGGTCACCCAATACA 58.439 45.455 0.00 0.00 46.04 2.29
4352 4393 2.285371 CGTGTTTGTACGGTCACTGTTG 60.285 50.000 0.00 0.00 40.22 3.33
4354 4395 1.937899 GTTTGTACGGTCACTGTTGCT 59.062 47.619 0.00 0.00 0.00 3.91
4375 8237 1.561076 TGTTATGTCATGCAGAGGCCT 59.439 47.619 3.86 3.86 40.13 5.19
4438 8300 3.769739 TTCCTTTCTGCTGCTCAGTTA 57.230 42.857 0.00 0.00 43.32 2.24
4498 8360 2.363683 CAAGGAGAGATGGCCAAGAAC 58.636 52.381 10.96 1.52 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.580911 TCGATGACGATTTGCATTATGAG 57.419 39.130 0.00 0.00 43.81 2.90
14 15 0.109458 CAGGTTCCGTTCGATGACGA 60.109 55.000 11.09 0.00 45.47 4.20
15 16 1.076533 CCAGGTTCCGTTCGATGACG 61.077 60.000 2.65 2.65 42.43 4.35
16 17 0.245539 TCCAGGTTCCGTTCGATGAC 59.754 55.000 0.00 0.00 0.00 3.06
18 19 1.290203 CATCCAGGTTCCGTTCGATG 58.710 55.000 0.00 0.00 0.00 3.84
19 20 0.462047 GCATCCAGGTTCCGTTCGAT 60.462 55.000 0.00 0.00 0.00 3.59
20 21 1.079405 GCATCCAGGTTCCGTTCGA 60.079 57.895 0.00 0.00 0.00 3.71
21 22 1.079127 AGCATCCAGGTTCCGTTCG 60.079 57.895 0.00 0.00 0.00 3.95
22 23 0.036388 TGAGCATCCAGGTTCCGTTC 60.036 55.000 0.00 0.00 0.00 3.95
23 24 0.620556 ATGAGCATCCAGGTTCCGTT 59.379 50.000 0.00 0.00 0.00 4.44
24 25 1.496060 TATGAGCATCCAGGTTCCGT 58.504 50.000 0.00 0.00 0.00 4.69
77 78 5.005012 CGTATGTTGTCATAACGGTTCGATT 59.995 40.000 0.00 0.00 38.13 3.34
78 79 4.501559 CGTATGTTGTCATAACGGTTCGAT 59.498 41.667 0.00 0.00 38.13 3.59
613 614 7.101652 AGACTAGCTCGTTAATCAAAGATGA 57.898 36.000 0.00 0.00 40.57 2.92
832 833 9.647797 ACTCGTGTTAGAATCATTACATTGTAA 57.352 29.630 11.47 11.47 0.00 2.41
833 834 9.647797 AACTCGTGTTAGAATCATTACATTGTA 57.352 29.630 0.05 0.00 34.15 2.41
877 878 1.851658 GCATTCAGCCGTGTGTTTTT 58.148 45.000 0.00 0.00 37.23 1.94
878 879 3.568093 GCATTCAGCCGTGTGTTTT 57.432 47.368 0.00 0.00 37.23 2.43
882 883 9.866864 GACTTTTAAGTAGCATTCAGCCGTGTG 62.867 44.444 0.00 0.00 41.47 3.82
883 884 7.994060 GACTTTTAAGTAGCATTCAGCCGTGT 61.994 42.308 0.00 0.00 41.47 4.49
884 885 5.671329 GACTTTTAAGTAGCATTCAGCCGTG 60.671 44.000 0.00 0.00 41.47 4.94
885 886 4.392138 GACTTTTAAGTAGCATTCAGCCGT 59.608 41.667 0.00 0.00 41.47 5.68
886 887 4.391830 TGACTTTTAAGTAGCATTCAGCCG 59.608 41.667 0.00 0.00 41.47 5.52
887 888 5.880054 TGACTTTTAAGTAGCATTCAGCC 57.120 39.130 0.00 0.00 41.47 4.85
888 889 8.642020 CAAATTGACTTTTAAGTAGCATTCAGC 58.358 33.333 0.00 0.00 39.88 4.26
889 890 9.132521 CCAAATTGACTTTTAAGTAGCATTCAG 57.867 33.333 0.00 0.00 39.88 3.02
890 891 8.855110 TCCAAATTGACTTTTAAGTAGCATTCA 58.145 29.630 0.00 0.00 39.88 2.57
891 892 9.860898 ATCCAAATTGACTTTTAAGTAGCATTC 57.139 29.630 0.00 0.00 39.88 2.67
899 900 8.003784 GCGACAAAATCCAAATTGACTTTTAAG 58.996 33.333 0.00 0.00 0.00 1.85
906 907 3.648009 TGGCGACAAAATCCAAATTGAC 58.352 40.909 0.00 0.00 37.44 3.18
921 922 2.663119 GCATTGAGTTGAAAATGGCGAC 59.337 45.455 0.00 0.00 34.90 5.19
922 923 2.295629 TGCATTGAGTTGAAAATGGCGA 59.704 40.909 0.00 0.00 34.90 5.54
923 924 2.674954 TGCATTGAGTTGAAAATGGCG 58.325 42.857 0.00 0.00 34.90 5.69
924 925 5.421212 TTTTGCATTGAGTTGAAAATGGC 57.579 34.783 0.00 0.00 34.90 4.40
926 927 8.339714 AGACAATTTTGCATTGAGTTGAAAATG 58.660 29.630 5.55 0.00 36.95 2.32
927 928 8.441312 AGACAATTTTGCATTGAGTTGAAAAT 57.559 26.923 5.55 0.00 33.51 1.82
928 929 7.765360 AGAGACAATTTTGCATTGAGTTGAAAA 59.235 29.630 5.55 0.00 33.51 2.29
929 930 7.267128 AGAGACAATTTTGCATTGAGTTGAAA 58.733 30.769 5.55 0.00 33.51 2.69
980 981 2.435120 TACTGACCACTCGCCTCCCA 62.435 60.000 0.00 0.00 0.00 4.37
1155 1159 3.702048 GGGAGGTGCACGTAGGCA 61.702 66.667 12.81 0.00 42.53 4.75
1188 1192 0.737715 GGAAGTCGCAGTAGTGGCAG 60.738 60.000 0.00 0.00 30.63 4.85
1347 1351 0.867753 CGCCGAAGAAGATGGTCTCG 60.868 60.000 0.00 0.00 0.00 4.04
1348 1352 0.528684 CCGCCGAAGAAGATGGTCTC 60.529 60.000 0.00 0.00 0.00 3.36
1693 1697 1.134461 CAAGCTCTCCTCCCACATCTG 60.134 57.143 0.00 0.00 0.00 2.90
1746 1750 5.840715 TCAATCTGCAGATCATAGACAGAC 58.159 41.667 28.83 0.00 39.97 3.51
1749 1753 4.100498 TGCTCAATCTGCAGATCATAGACA 59.900 41.667 28.83 20.95 35.31 3.41
1767 1771 1.108727 CAAACTTGGTGCCCTGCTCA 61.109 55.000 0.00 0.00 0.00 4.26
1799 1803 8.034313 AGCTCATAGGTATGGACAGAATAAAA 57.966 34.615 0.00 0.00 34.50 1.52
1815 1819 6.838090 TCAAGATAGGGATCATAGCTCATAGG 59.162 42.308 0.00 0.00 34.17 2.57
1852 1856 5.947228 ACAACACACATATTTGTCAGGAG 57.053 39.130 0.00 0.00 32.34 3.69
1980 1989 7.681939 AGACTGAACTTCTAAAACACAAACA 57.318 32.000 0.00 0.00 0.00 2.83
2036 2045 4.201930 CGTAACCTCAGCTCTGTAACCTAG 60.202 50.000 0.00 0.00 0.00 3.02
2123 2132 5.446143 AGCTCGATACTGTAGAAAGGATG 57.554 43.478 0.00 0.00 0.00 3.51
2125 2134 6.183360 GGTTTAGCTCGATACTGTAGAAAGGA 60.183 42.308 0.00 0.00 0.00 3.36
2200 2214 1.347707 TCTCGTGTTGCCTGAATTCCT 59.652 47.619 2.27 0.00 0.00 3.36
2216 2230 2.611292 GGCATTCAGGAGATTTGTCTCG 59.389 50.000 0.00 0.00 37.61 4.04
2355 2369 2.854963 ACCATTGCATCGCATGTCTAT 58.145 42.857 0.00 0.00 38.76 1.98
2412 2427 2.040178 AGTAATTCTGTCCGCCTAGGG 58.960 52.381 11.72 0.14 41.52 3.53
2456 2471 1.019278 ATACTGCAACTTGGACGGCG 61.019 55.000 4.80 4.80 0.00 6.46
2503 2518 9.281371 CTGATGTCAGATGGTTTATGTCATTAT 57.719 33.333 3.96 0.00 46.59 1.28
2569 2584 2.000447 GTGTAATCCACGGACAAGCTC 59.000 52.381 0.00 0.00 33.61 4.09
2672 2695 1.005748 TGAGGCAACAGTCAGAGCG 60.006 57.895 0.00 0.00 41.41 5.03
2751 2774 6.088824 CCTTTTAACTTGCAACTATCAGCAG 58.911 40.000 0.00 0.00 42.39 4.24
2791 2815 3.929094 TGGTTGAGTAATACACCCGAAC 58.071 45.455 0.00 0.00 0.00 3.95
2794 2818 4.438200 GCAATTGGTTGAGTAATACACCCG 60.438 45.833 7.72 0.00 37.53 5.28
2976 3000 5.747197 GCTGCAACATTTGATATGGAAAGAG 59.253 40.000 0.00 0.00 0.00 2.85
2982 3006 6.309436 CGTATAGCTGCAACATTTGATATGG 58.691 40.000 1.02 0.00 0.00 2.74
3239 3263 0.392060 AACCCAATCCGCGTAGTTCC 60.392 55.000 4.92 0.00 0.00 3.62
3249 3273 2.795329 TCAAGCTTCTGAACCCAATCC 58.205 47.619 0.00 0.00 0.00 3.01
3267 3291 1.070786 GCACCAGGTTCCGTCTTCA 59.929 57.895 0.00 0.00 0.00 3.02
3276 3300 0.830444 TAGACTCGTGGCACCAGGTT 60.830 55.000 16.62 6.61 33.97 3.50
3298 3322 3.007398 GCCATATCCTTTGTCTCGGAGAT 59.993 47.826 11.46 0.00 33.89 2.75
3309 3333 2.289072 CGAGTCCATCGCCATATCCTTT 60.289 50.000 0.00 0.00 45.98 3.11
3354 3378 3.916544 TGCAGATCTAGCCCGCGG 61.917 66.667 21.04 21.04 0.00 6.46
3363 3387 6.471146 AGATTTACTGAAACTGTGCAGATCT 58.529 36.000 15.23 10.81 36.07 2.75
3398 3422 0.792640 GCACAATGACCGTGTCAGAG 59.207 55.000 11.50 8.94 46.04 3.35
3447 3471 1.221840 GTCCATGGCGATCACCAGT 59.778 57.895 6.96 0.00 44.71 4.00
3498 3522 2.337583 TCGCTTTCCAAATCTGACTCG 58.662 47.619 0.00 0.00 0.00 4.18
3511 3535 1.205893 ACTCATCTCACCCTCGCTTTC 59.794 52.381 0.00 0.00 0.00 2.62
3512 3536 1.066573 CACTCATCTCACCCTCGCTTT 60.067 52.381 0.00 0.00 0.00 3.51
3513 3537 0.534412 CACTCATCTCACCCTCGCTT 59.466 55.000 0.00 0.00 0.00 4.68
3514 3538 1.326213 CCACTCATCTCACCCTCGCT 61.326 60.000 0.00 0.00 0.00 4.93
3515 3539 1.142748 CCACTCATCTCACCCTCGC 59.857 63.158 0.00 0.00 0.00 5.03
3516 3540 0.684479 TCCCACTCATCTCACCCTCG 60.684 60.000 0.00 0.00 0.00 4.63
3541 3571 1.306141 TCAGACGGAGGAAGGCCAT 60.306 57.895 5.01 0.00 36.29 4.40
3567 3597 3.350833 GTTGGACAGCAGAAATCCATCT 58.649 45.455 0.00 0.00 42.09 2.90
3710 3740 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3711 3741 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3712 3742 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3713 3743 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3714 3744 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3715 3745 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3732 3762 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
3733 3763 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
3738 3768 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
3739 3769 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
3740 3770 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
3741 3771 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
3742 3772 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
3743 3773 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
3744 3774 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
3745 3775 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
3746 3776 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
3747 3777 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
3748 3778 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
3749 3779 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
3750 3780 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
3751 3781 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
3752 3782 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
3753 3783 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
3754 3784 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
3765 3795 9.653287 CCAAAATATGTCTACATACATCCGTAT 57.347 33.333 4.98 0.00 41.15 3.06
3766 3796 8.862085 TCCAAAATATGTCTACATACATCCGTA 58.138 33.333 4.98 0.00 41.15 4.02
3767 3797 7.732025 TCCAAAATATGTCTACATACATCCGT 58.268 34.615 4.98 0.00 41.15 4.69
3768 3798 7.872993 ACTCCAAAATATGTCTACATACATCCG 59.127 37.037 4.98 0.00 41.15 4.18
3769 3799 8.993121 CACTCCAAAATATGTCTACATACATCC 58.007 37.037 4.98 0.00 41.15 3.51
3770 3800 9.547753 ACACTCCAAAATATGTCTACATACATC 57.452 33.333 4.98 0.00 41.15 3.06
3776 3806 9.817809 GAATCTACACTCCAAAATATGTCTACA 57.182 33.333 0.00 0.00 0.00 2.74
3777 3807 9.817809 TGAATCTACACTCCAAAATATGTCTAC 57.182 33.333 0.00 0.00 0.00 2.59
3778 3808 9.817809 GTGAATCTACACTCCAAAATATGTCTA 57.182 33.333 0.00 0.00 37.73 2.59
3779 3809 8.543774 AGTGAATCTACACTCCAAAATATGTCT 58.456 33.333 0.00 0.00 46.36 3.41
3780 3810 8.723942 AGTGAATCTACACTCCAAAATATGTC 57.276 34.615 0.00 0.00 46.36 3.06
3793 3823 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3794 3824 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3795 3825 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3796 3826 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3797 3827 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3798 3828 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3799 3829 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3800 3830 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3801 3831 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3802 3832 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3803 3833 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3804 3834 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3805 3835 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3806 3836 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3807 3837 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3808 3838 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3809 3839 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3810 3840 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3811 3841 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3812 3842 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3813 3843 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
3814 3844 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
3815 3845 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
3816 3846 7.921214 AGATATTCCAACAAGTGACTACATACG 59.079 37.037 0.00 0.00 0.00 3.06
3819 3849 9.201989 TCTAGATATTCCAACAAGTGACTACAT 57.798 33.333 0.00 0.00 0.00 2.29
3820 3850 8.589701 TCTAGATATTCCAACAAGTGACTACA 57.410 34.615 0.00 0.00 0.00 2.74
3821 3851 9.871238 TTTCTAGATATTCCAACAAGTGACTAC 57.129 33.333 0.00 0.00 0.00 2.73
3823 3853 8.816894 TCTTTCTAGATATTCCAACAAGTGACT 58.183 33.333 0.00 0.00 0.00 3.41
3824 3854 8.874816 GTCTTTCTAGATATTCCAACAAGTGAC 58.125 37.037 0.00 0.00 31.86 3.67
3825 3855 8.816894 AGTCTTTCTAGATATTCCAACAAGTGA 58.183 33.333 0.00 0.00 31.86 3.41
3826 3856 9.442047 AAGTCTTTCTAGATATTCCAACAAGTG 57.558 33.333 0.00 0.00 31.86 3.16
3839 3869 9.765795 CGTTCCCAAATATAAGTCTTTCTAGAT 57.234 33.333 0.00 0.00 31.86 1.98
3840 3870 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
3841 3871 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
3842 3872 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
3843 3873 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
3844 3874 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
3845 3875 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
3846 3876 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
3847 3877 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
3848 3878 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
3849 3879 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
3850 3880 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3851 3881 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3852 3882 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3853 3883 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3854 3884 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3855 3885 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
3856 3886 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
3857 3887 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3858 3888 1.002069 TAGTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3859 3889 1.213926 TCTAGTACTCCCTCCGTTCCC 59.786 57.143 0.00 0.00 0.00 3.97
3860 3890 2.296792 GTCTAGTACTCCCTCCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
3861 3891 2.996631 TGTCTAGTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
3862 3892 3.666345 ATGTCTAGTACTCCCTCCGTT 57.334 47.619 0.00 0.00 0.00 4.44
3863 3893 3.666345 AATGTCTAGTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
3864 3894 3.502979 GCTAATGTCTAGTACTCCCTCCG 59.497 52.174 0.00 0.00 0.00 4.63
3865 3895 4.521256 CAGCTAATGTCTAGTACTCCCTCC 59.479 50.000 0.00 0.00 0.00 4.30
3866 3896 5.378332 TCAGCTAATGTCTAGTACTCCCTC 58.622 45.833 0.00 0.00 0.00 4.30
3867 3897 5.390087 TCAGCTAATGTCTAGTACTCCCT 57.610 43.478 0.00 0.00 0.00 4.20
3868 3898 5.770663 TGATCAGCTAATGTCTAGTACTCCC 59.229 44.000 0.00 0.00 0.00 4.30
3869 3899 6.488683 AGTGATCAGCTAATGTCTAGTACTCC 59.511 42.308 0.00 0.00 0.00 3.85
3870 3900 7.359595 CAGTGATCAGCTAATGTCTAGTACTC 58.640 42.308 0.00 0.00 0.00 2.59
3871 3901 6.264292 CCAGTGATCAGCTAATGTCTAGTACT 59.736 42.308 0.00 0.00 0.00 2.73
3872 3902 6.442952 CCAGTGATCAGCTAATGTCTAGTAC 58.557 44.000 0.00 0.00 0.00 2.73
3914 3944 6.210385 TGCTGGCTGAATAATTGAACCTTTAA 59.790 34.615 0.00 0.00 0.00 1.52
3916 3946 4.527816 TGCTGGCTGAATAATTGAACCTTT 59.472 37.500 0.00 0.00 0.00 3.11
3917 3947 4.082026 GTGCTGGCTGAATAATTGAACCTT 60.082 41.667 0.00 0.00 0.00 3.50
3918 3948 3.445096 GTGCTGGCTGAATAATTGAACCT 59.555 43.478 0.00 0.00 0.00 3.50
3919 3949 3.429410 GGTGCTGGCTGAATAATTGAACC 60.429 47.826 0.00 0.00 0.00 3.62
3928 3965 1.842562 ACTGATAGGTGCTGGCTGAAT 59.157 47.619 0.00 0.00 0.00 2.57
3946 3983 0.672342 AGGTGTCTCGTAAACGCACT 59.328 50.000 10.20 0.00 39.60 4.40
3974 4011 7.117092 GCGCCCAGTTAAATTTAAATTCAGAAA 59.883 33.333 13.68 4.38 0.00 2.52
4001 4039 2.223735 TGTGAACTCAACTGACGGAGAC 60.224 50.000 0.00 0.00 35.17 3.36
4003 4041 2.128035 GTGTGAACTCAACTGACGGAG 58.872 52.381 0.00 0.00 37.18 4.63
4004 4042 1.478916 TGTGTGAACTCAACTGACGGA 59.521 47.619 0.00 0.00 0.00 4.69
4005 4043 1.934589 TGTGTGAACTCAACTGACGG 58.065 50.000 0.00 0.00 0.00 4.79
4006 4044 2.476619 GGATGTGTGAACTCAACTGACG 59.523 50.000 0.00 0.00 0.00 4.35
4024 4065 6.210385 GGTAGTACACATCATCATCTCAGGAT 59.790 42.308 2.06 0.00 0.00 3.24
4065 4106 9.653516 TCCATATTGAGATCTCTAGAAAGACTT 57.346 33.333 22.95 1.53 0.00 3.01
4066 4107 9.077885 GTCCATATTGAGATCTCTAGAAAGACT 57.922 37.037 22.95 2.23 0.00 3.24
4067 4108 9.077885 AGTCCATATTGAGATCTCTAGAAAGAC 57.922 37.037 22.95 20.08 0.00 3.01
4070 4111 9.868160 TGTAGTCCATATTGAGATCTCTAGAAA 57.132 33.333 22.95 9.74 0.00 2.52
4074 4115 9.384764 CGTATGTAGTCCATATTGAGATCTCTA 57.615 37.037 22.95 16.42 38.29 2.43
4075 4116 7.338196 CCGTATGTAGTCCATATTGAGATCTCT 59.662 40.741 22.95 6.99 38.29 3.10
4076 4117 7.337184 TCCGTATGTAGTCCATATTGAGATCTC 59.663 40.741 16.21 16.21 38.29 2.75
4077 4118 7.175797 TCCGTATGTAGTCCATATTGAGATCT 58.824 38.462 0.00 0.00 38.29 2.75
4078 4119 7.392494 TCCGTATGTAGTCCATATTGAGATC 57.608 40.000 0.00 0.00 38.29 2.75
4079 4120 6.127591 GCTCCGTATGTAGTCCATATTGAGAT 60.128 42.308 7.97 0.00 38.02 2.75
4080 4121 5.183331 GCTCCGTATGTAGTCCATATTGAGA 59.817 44.000 7.97 0.00 38.02 3.27
4081 4122 5.048013 TGCTCCGTATGTAGTCCATATTGAG 60.048 44.000 0.00 0.00 38.29 3.02
4082 4123 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
4083 4124 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
4084 4125 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4085 4126 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4086 4127 5.801531 ATTTGCTCCGTATGTAGTCCATA 57.198 39.130 0.00 0.00 34.86 2.74
4087 4128 4.689612 ATTTGCTCCGTATGTAGTCCAT 57.310 40.909 0.00 0.00 37.58 3.41
4088 4129 4.188462 CAATTTGCTCCGTATGTAGTCCA 58.812 43.478 0.00 0.00 0.00 4.02
4089 4130 3.002348 GCAATTTGCTCCGTATGTAGTCC 59.998 47.826 14.11 0.00 40.96 3.85
4090 4131 3.302480 CGCAATTTGCTCCGTATGTAGTC 60.302 47.826 18.57 0.00 42.25 2.59
4091 4132 2.607635 CGCAATTTGCTCCGTATGTAGT 59.392 45.455 18.57 0.00 42.25 2.73
4092 4133 2.607635 ACGCAATTTGCTCCGTATGTAG 59.392 45.455 18.57 2.44 42.25 2.74
4093 4134 2.350192 CACGCAATTTGCTCCGTATGTA 59.650 45.455 18.57 0.00 42.25 2.29
4094 4135 1.130373 CACGCAATTTGCTCCGTATGT 59.870 47.619 18.57 5.08 42.25 2.29
4095 4136 1.396648 TCACGCAATTTGCTCCGTATG 59.603 47.619 18.57 4.47 42.25 2.39
4096 4137 1.396996 GTCACGCAATTTGCTCCGTAT 59.603 47.619 18.57 0.00 42.25 3.06
4097 4138 0.793861 GTCACGCAATTTGCTCCGTA 59.206 50.000 18.57 0.00 42.25 4.02
4098 4139 0.884704 AGTCACGCAATTTGCTCCGT 60.885 50.000 18.57 7.14 42.25 4.69
4099 4140 0.179215 GAGTCACGCAATTTGCTCCG 60.179 55.000 18.57 6.52 42.25 4.63
4100 4141 1.160137 AGAGTCACGCAATTTGCTCC 58.840 50.000 18.57 4.47 42.25 4.70
4101 4142 2.736721 TGTAGAGTCACGCAATTTGCTC 59.263 45.455 18.57 9.25 42.25 4.26
4102 4143 2.480419 GTGTAGAGTCACGCAATTTGCT 59.520 45.455 18.57 3.95 42.25 3.91
4103 4144 2.480419 AGTGTAGAGTCACGCAATTTGC 59.520 45.455 11.42 11.42 42.40 3.68
4104 4145 3.990469 AGAGTGTAGAGTCACGCAATTTG 59.010 43.478 0.00 0.00 42.40 2.32
4105 4146 4.258702 AGAGTGTAGAGTCACGCAATTT 57.741 40.909 0.00 0.00 42.40 1.82
4106 4147 3.944055 AGAGTGTAGAGTCACGCAATT 57.056 42.857 0.00 0.00 42.40 2.32
4107 4148 5.047943 AGTTTAGAGTGTAGAGTCACGCAAT 60.048 40.000 0.00 0.00 42.40 3.56
4108 4149 4.277672 AGTTTAGAGTGTAGAGTCACGCAA 59.722 41.667 0.00 0.00 42.40 4.85
4109 4150 3.819337 AGTTTAGAGTGTAGAGTCACGCA 59.181 43.478 0.00 0.00 42.40 5.24
4110 4151 4.422546 AGTTTAGAGTGTAGAGTCACGC 57.577 45.455 0.00 0.00 42.40 5.34
4111 4152 5.119898 ACGTAGTTTAGAGTGTAGAGTCACG 59.880 44.000 0.00 0.17 37.78 4.35
4112 4153 6.479095 ACGTAGTTTAGAGTGTAGAGTCAC 57.521 41.667 0.00 0.00 37.78 3.67
4166 4207 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
4167 4208 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
4168 4209 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
4169 4210 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
4170 4211 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4171 4212 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4172 4213 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4173 4214 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4174 4215 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4175 4216 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4176 4217 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4177 4218 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4178 4219 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
4179 4220 2.042162 ACAACTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
4180 4221 1.203149 ACAACTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
4181 4222 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62
4182 4223 1.672145 GCACAACTACTCCCTCCGTTC 60.672 57.143 0.00 0.00 0.00 3.95
4183 4224 0.320697 GCACAACTACTCCCTCCGTT 59.679 55.000 0.00 0.00 0.00 4.44
4184 4225 0.830444 TGCACAACTACTCCCTCCGT 60.830 55.000 0.00 0.00 0.00 4.69
4185 4226 0.389948 GTGCACAACTACTCCCTCCG 60.390 60.000 13.17 0.00 0.00 4.63
4186 4227 0.977395 AGTGCACAACTACTCCCTCC 59.023 55.000 21.04 0.00 37.36 4.30
4187 4228 4.645588 AGTATAGTGCACAACTACTCCCTC 59.354 45.833 21.04 0.00 44.20 4.30
4188 4229 4.611367 AGTATAGTGCACAACTACTCCCT 58.389 43.478 21.04 0.00 44.20 4.20
4189 4230 5.221204 GGTAGTATAGTGCACAACTACTCCC 60.221 48.000 32.90 24.73 44.20 4.30
4190 4231 5.593502 AGGTAGTATAGTGCACAACTACTCC 59.406 44.000 32.90 25.32 44.20 3.85
4191 4232 6.496571 CAGGTAGTATAGTGCACAACTACTC 58.503 44.000 32.90 27.02 44.20 2.59
4192 4233 5.163540 GCAGGTAGTATAGTGCACAACTACT 60.164 44.000 32.90 27.83 44.20 2.57
4193 4234 5.041940 GCAGGTAGTATAGTGCACAACTAC 58.958 45.833 30.03 30.03 44.20 2.73
4194 4235 4.098960 GGCAGGTAGTATAGTGCACAACTA 59.901 45.833 21.04 18.97 45.47 2.24
4195 4236 3.118738 GGCAGGTAGTATAGTGCACAACT 60.119 47.826 21.04 19.96 43.40 3.16
4196 4237 3.195661 GGCAGGTAGTATAGTGCACAAC 58.804 50.000 21.04 13.81 34.25 3.32
4197 4238 2.159156 CGGCAGGTAGTATAGTGCACAA 60.159 50.000 21.04 0.37 34.25 3.33
4198 4239 1.407618 CGGCAGGTAGTATAGTGCACA 59.592 52.381 21.04 5.47 34.25 4.57
4199 4240 1.679680 TCGGCAGGTAGTATAGTGCAC 59.320 52.381 9.40 9.40 34.25 4.57
4200 4241 1.954382 CTCGGCAGGTAGTATAGTGCA 59.046 52.381 0.00 0.00 34.25 4.57
4201 4242 1.269998 CCTCGGCAGGTAGTATAGTGC 59.730 57.143 0.00 0.00 34.60 4.40
4202 4243 1.887198 CCCTCGGCAGGTAGTATAGTG 59.113 57.143 2.95 0.00 38.30 2.74
4203 4244 1.498145 ACCCTCGGCAGGTAGTATAGT 59.502 52.381 2.95 0.00 38.30 2.12
4204 4245 2.289592 ACCCTCGGCAGGTAGTATAG 57.710 55.000 2.95 0.00 38.30 1.31
4205 4246 2.761786 AACCCTCGGCAGGTAGTATA 57.238 50.000 2.95 0.00 38.30 1.47
4206 4247 1.875488 AAACCCTCGGCAGGTAGTAT 58.125 50.000 2.95 0.00 38.30 2.12
4207 4248 1.648116 AAAACCCTCGGCAGGTAGTA 58.352 50.000 2.95 0.00 38.30 1.82
4208 4249 1.648116 TAAAACCCTCGGCAGGTAGT 58.352 50.000 2.95 0.00 38.30 2.73
4209 4250 3.277142 AATAAAACCCTCGGCAGGTAG 57.723 47.619 2.95 0.00 38.30 3.18
4210 4251 3.724732 AAATAAAACCCTCGGCAGGTA 57.275 42.857 2.95 0.00 38.30 3.08
4211 4252 2.560981 CAAAATAAAACCCTCGGCAGGT 59.439 45.455 2.95 0.00 38.30 4.00
4212 4253 2.094234 CCAAAATAAAACCCTCGGCAGG 60.094 50.000 0.00 0.00 39.98 4.85
4213 4254 2.823154 TCCAAAATAAAACCCTCGGCAG 59.177 45.455 0.00 0.00 0.00 4.85
4214 4255 2.823154 CTCCAAAATAAAACCCTCGGCA 59.177 45.455 0.00 0.00 0.00 5.69
4215 4256 2.823747 ACTCCAAAATAAAACCCTCGGC 59.176 45.455 0.00 0.00 0.00 5.54
4216 4257 6.578163 TTTACTCCAAAATAAAACCCTCGG 57.422 37.500 0.00 0.00 0.00 4.63
4217 4258 7.062956 GCATTTTACTCCAAAATAAAACCCTCG 59.937 37.037 0.00 0.00 43.51 4.63
4218 4259 7.875554 TGCATTTTACTCCAAAATAAAACCCTC 59.124 33.333 0.00 0.00 43.51 4.30
4219 4260 7.659799 GTGCATTTTACTCCAAAATAAAACCCT 59.340 33.333 0.00 0.00 43.51 4.34
4220 4261 7.659799 AGTGCATTTTACTCCAAAATAAAACCC 59.340 33.333 0.00 0.00 43.51 4.11
4221 4262 8.495148 CAGTGCATTTTACTCCAAAATAAAACC 58.505 33.333 0.00 0.00 43.51 3.27
4222 4263 8.495148 CCAGTGCATTTTACTCCAAAATAAAAC 58.505 33.333 0.00 0.00 43.51 2.43
4223 4264 7.172361 GCCAGTGCATTTTACTCCAAAATAAAA 59.828 33.333 0.00 0.00 43.51 1.52
4224 4265 6.648725 GCCAGTGCATTTTACTCCAAAATAAA 59.351 34.615 0.00 0.00 43.51 1.40
4225 4266 6.162777 GCCAGTGCATTTTACTCCAAAATAA 58.837 36.000 0.00 0.00 43.51 1.40
4226 4267 5.244851 TGCCAGTGCATTTTACTCCAAAATA 59.755 36.000 0.00 0.00 43.51 1.40
4227 4268 4.040217 TGCCAGTGCATTTTACTCCAAAAT 59.960 37.500 0.00 0.00 45.72 1.82
4228 4269 3.386078 TGCCAGTGCATTTTACTCCAAAA 59.614 39.130 0.00 0.00 44.23 2.44
4229 4270 2.961741 TGCCAGTGCATTTTACTCCAAA 59.038 40.909 0.00 0.00 44.23 3.28
4230 4271 2.591923 TGCCAGTGCATTTTACTCCAA 58.408 42.857 0.00 0.00 44.23 3.53
4231 4272 2.284754 TGCCAGTGCATTTTACTCCA 57.715 45.000 0.00 0.00 44.23 3.86
4271 4312 3.412386 AGTACAGTGACCAAAATGAGCC 58.588 45.455 0.00 0.00 0.00 4.70
4277 4318 7.385752 CCGTATTTCTAAGTACAGTGACCAAAA 59.614 37.037 0.00 0.00 0.00 2.44
4352 4393 2.223433 GCCTCTGCATGACATAACAAGC 60.223 50.000 0.00 0.00 37.47 4.01
4354 4395 2.025981 AGGCCTCTGCATGACATAACAA 60.026 45.455 0.00 0.00 40.13 2.83
4375 8237 0.953727 GTGCAATCACTCTTGGCACA 59.046 50.000 9.90 0.00 40.03 4.57
4498 8360 7.748241 GTCTCTCTGCTTTTTAATGCAAGTAAG 59.252 37.037 0.00 0.00 38.40 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.