AutoCloner

Multiple sequence alignment - TraesCS1D01G384100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G384100	chr1D	100.000	2508	0	0	1	2508	458206674	458209181	0.000000e+00	4632.0
1	TraesCS1D01G384100	chr1D	86.740	1365	95	30	26	1356	458166000	458167312	0.000000e+00	1439.0
2	TraesCS1D01G384100	chr1D	88.861	790	74	9	573	1353	458238137	458238921	0.000000e+00	959.0
3	TraesCS1D01G384100	chr1D	80.044	902	97	35	848	1704	458164347	458165210	2.150000e-165	592.0
4	TraesCS1D01G384100	chr1D	83.359	661	65	19	1060	1707	458266587	458267215	1.010000e-158	569.0
5	TraesCS1D01G384100	chr1D	88.804	393	37	5	1706	2093	458267258	458267648	2.260000e-130	475.0
6	TraesCS1D01G384100	chr1B	90.934	2548	139	33	1	2508	628873991	628876486	0.000000e+00	3341.0
7	TraesCS1D01G384100	chr1B	89.441	2273	125	38	1	2212	628826418	628828636	0.000000e+00	2761.0
8	TraesCS1D01G384100	chr1B	90.903	1572	92	20	1	1552	628987086	628988626	0.000000e+00	2063.0
9	TraesCS1D01G384100	chr1B	88.722	1596	92	26	1	1552	628911080	628912631	0.000000e+00	1869.0
10	TraesCS1D01G384100	chr1B	90.045	1346	74	23	1182	2508	628951039	628952343	0.000000e+00	1688.0
11	TraesCS1D01G384100	chr1B	89.917	1200	70	16	1	1180	628939591	628940759	0.000000e+00	1498.0
12	TraesCS1D01G384100	chr1B	88.704	1142	61	21	421	1552	629073434	629074517	0.000000e+00	1332.0
13	TraesCS1D01G384100	chr1B	82.647	1602	177	59	1	1542	629052991	629054551	0.000000e+00	1325.0
14	TraesCS1D01G384100	chr1B	82.568	1589	189	56	1	1542	628993648	628995195	0.000000e+00	1319.0
15	TraesCS1D01G384100	chr1B	82.114	1599	189	59	1	1542	628917302	628918860	0.000000e+00	1279.0
16	TraesCS1D01G384100	chr1B	82.603	1460	181	46	2	1429	628810508	628811926	0.000000e+00	1221.0
17	TraesCS1D01G384100	chr1B	89.130	828	65	9	1691	2508	628780329	628781141	0.000000e+00	1007.0
18	TraesCS1D01G384100	chr1B	85.090	892	81	31	1	877	628996772	628997626	0.000000e+00	863.0
19	TraesCS1D01G384100	chr1B	84.831	890	87	29	1	877	628920450	628921304	0.000000e+00	852.0
20	TraesCS1D01G384100	chr1B	84.193	892	89	31	1	877	629056135	629056989	0.000000e+00	819.0
21	TraesCS1D01G384100	chr1B	85.222	812	95	14	1706	2500	628784692	628785495	0.000000e+00	811.0
22	TraesCS1D01G384100	chr1B	94.510	510	26	2	2001	2508	628914614	628915123	0.000000e+00	785.0
23	TraesCS1D01G384100	chr1B	94.499	509	26	2	2002	2508	628990702	628991210	0.000000e+00	784.0
24	TraesCS1D01G384100	chr1B	92.745	510	35	2	2001	2508	629076287	629076796	0.000000e+00	736.0
25	TraesCS1D01G384100	chr1B	84.067	659	68	19	1063	1707	628783963	628784598	3.570000e-168	601.0
26	TraesCS1D01G384100	chr1B	91.981	424	28	5	3	425	629071522	629071940	7.730000e-165	590.0
27	TraesCS1D01G384100	chr1B	85.516	504	57	7	2006	2500	628807460	628807956	1.720000e-141	512.0
28	TraesCS1D01G384100	chr1B	81.989	372	42	9	1335	1697	628691176	628691531	2.440000e-75	292.0
29	TraesCS1D01G384100	chr1B	91.262	206	15	2	1	205	628826033	628826236	6.830000e-71	278.0
30	TraesCS1D01G384100	chr1B	90.798	163	13	2	1624	1785	628807235	628807396	1.510000e-52	217.0
31	TraesCS1D01G384100	chr1A	87.968	1255	107	23	125	1356	550823695	550824928	0.000000e+00	1441.0
32	TraesCS1D01G384100	chr1A	85.987	1099	91	23	1	1080	550682011	550683065	0.000000e+00	1118.0
33	TraesCS1D01G384100	chr1A	85.987	1099	91	23	1	1080	550691640	550692694	0.000000e+00	1118.0
34	TraesCS1D01G384100	chr1A	85.728	1051	92	15	394	1428	550654873	550655881	0.000000e+00	1057.0
35	TraesCS1D01G384100	chr1A	88.164	828	66	14	168	980	550668515	550669325	0.000000e+00	957.0
36	TraesCS1D01G384100	chr1A	81.132	954	86	29	858	1751	550783732	550784651	0.000000e+00	678.0
37	TraesCS1D01G384100	chr1A	88.235	544	52	6	1975	2508	550789266	550789807	7.560000e-180	640.0
38	TraesCS1D01G384100	chr1A	83.912	317	48	2	1793	2106	550686644	550686960	1.460000e-77	300.0
39	TraesCS1D01G384100	chr1A	83.596	317	49	2	1793	2106	550676863	550677179	6.780000e-76	294.0
40	TraesCS1D01G384100	chr1A	80.696	316	40	17	1335	1640	550664650	550664954	2.510000e-55	226.0
41	TraesCS1D01G384100	chr1A	78.723	282	35	18	1371	1640	550679554	550679822	5.550000e-37	165.0
42	TraesCS1D01G384100	chr1A	78.136	279	40	17	1371	1639	550689188	550689455	9.290000e-35	158.0
43	TraesCS1D01G384100	chr1A	83.908	174	9	5	1559	1732	550694922	550695076	5.590000e-32	148.0
44	TraesCS1D01G384100	chr1A	90.698	43	3	1	1756	1798	550786596	550786637	3.490000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G384100	chr1D	458206674	458209181	2507	False	4632.000000	4632	100.000000	1	2508	1	chr1D.!!$F1	2507
1	TraesCS1D01G384100	chr1D	458164347	458167312	2965	False	1015.500000	1439	83.392000	26	1704	2	chr1D.!!$F3	1678
2	TraesCS1D01G384100	chr1D	458238137	458238921	784	False	959.000000	959	88.861000	573	1353	1	chr1D.!!$F2	780
3	TraesCS1D01G384100	chr1D	458266587	458267648	1061	False	522.000000	569	86.081500	1060	2093	2	chr1D.!!$F4	1033
4	TraesCS1D01G384100	chr1B	628873991	628876486	2495	False	3341.000000	3341	90.934000	1	2508	1	chr1B.!!$F2	2507
5	TraesCS1D01G384100	chr1B	628951039	628952343	1304	False	1688.000000	1688	90.045000	1182	2508	1	chr1B.!!$F4	1326
6	TraesCS1D01G384100	chr1B	628826033	628828636	2603	False	1519.500000	2761	90.351500	1	2212	2	chr1B.!!$F7	2211
7	TraesCS1D01G384100	chr1B	628939591	628940759	1168	False	1498.000000	1498	89.917000	1	1180	1	chr1B.!!$F3	1179
8	TraesCS1D01G384100	chr1B	628987086	628997626	10540	False	1257.250000	2063	88.265000	1	2508	4	chr1B.!!$F9	2507
9	TraesCS1D01G384100	chr1B	628911080	628921304	10224	False	1196.250000	1869	87.544250	1	2508	4	chr1B.!!$F8	2507
10	TraesCS1D01G384100	chr1B	629052991	629056989	3998	False	1072.000000	1325	83.420000	1	1542	2	chr1B.!!$F10	1541
11	TraesCS1D01G384100	chr1B	629071522	629076796	5274	False	886.000000	1332	91.143333	3	2508	3	chr1B.!!$F11	2505
12	TraesCS1D01G384100	chr1B	628780329	628785495	5166	False	806.333333	1007	86.139667	1063	2508	3	chr1B.!!$F5	1445
13	TraesCS1D01G384100	chr1B	628807235	628811926	4691	False	650.000000	1221	86.305667	2	2500	3	chr1B.!!$F6	2498
14	TraesCS1D01G384100	chr1A	550823695	550824928	1233	False	1441.000000	1441	87.968000	125	1356	1	chr1A.!!$F2	1231
15	TraesCS1D01G384100	chr1A	550654873	550655881	1008	False	1057.000000	1057	85.728000	394	1428	1	chr1A.!!$F1	1034
16	TraesCS1D01G384100	chr1A	550664650	550669325	4675	False	591.500000	957	84.430000	168	1640	2	chr1A.!!$F3	1472
17	TraesCS1D01G384100	chr1A	550676863	550695076	18213	False	471.571429	1118	82.892714	1	2106	7	chr1A.!!$F4	2105
18	TraesCS1D01G384100	chr1A	550783732	550789807	6075	False	458.166667	678	86.688333	858	2508	3	chr1A.!!$F5	1650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
149	5318	2.166459	CAGAGACGAAGGGCAACAGATA	59.834	50.0	0.0	0.0	39.74	1.98	F
1238	16682	0.394192	CTTCATGCTATGGCCGAGGA	59.606	55.0	0.0	0.0	37.74	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1427	16923	0.034670	AGGAGCAAATCACCAGCCTC	60.035	55.0	0.00	0.0	0.00	4.70	R
2081	21213	0.540597	GGAGCTCCCAGCCAAAGTTT	60.541	55.0	23.19	0.0	43.77	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	5189	4.373348	CGTCCTTCTCTACCTTTACCAG	57.627	50.000	0.00	0.00	0.00	4.00
37	5205	6.088616	CCTTTACCAGACGAAAAACTACTACG	59.911	42.308	0.00	0.00	0.00	3.51
38	5206	4.574599	ACCAGACGAAAAACTACTACGT	57.425	40.909	0.00	0.00	39.82	3.57
49	5218	7.540055	CGAAAAACTACTACGTGGACTTCTATT	59.460	37.037	5.70	0.00	0.00	1.73
50	5219	9.201127	GAAAAACTACTACGTGGACTTCTATTT	57.799	33.333	5.70	0.00	0.00	1.40
82	5251	4.448395	TGCAATGTATTTCTGCAGCAAAAC	59.552	37.500	9.47	5.53	41.01	2.43
91	5260	4.870123	TCTGCAGCAAAACATTTGGTAT	57.130	36.364	9.47	0.00	0.00	2.73
95	5264	5.609423	TGCAGCAAAACATTTGGTATCTTT	58.391	33.333	7.15	0.00	0.00	2.52
96	5265	6.753180	TGCAGCAAAACATTTGGTATCTTTA	58.247	32.000	7.15	0.00	0.00	1.85
129	5298	3.189910	GTCAGCAGAACAATCTTGATGCA	59.810	43.478	16.00	0.00	37.77	3.96
149	5318	2.166459	CAGAGACGAAGGGCAACAGATA	59.834	50.000	0.00	0.00	39.74	1.98
169	5338	2.897972	CCGGTAGGTACTGGTGCC	59.102	66.667	6.82	0.00	45.63	5.01
226	12543	2.604462	CTGCACAAAAGTTGAAAGTGGC	59.396	45.455	0.00	0.00	0.00	5.01
236	12553	3.118038	AGTTGAAAGTGGCAGGTCTGTAA	60.118	43.478	0.00	0.00	0.00	2.41
237	12554	3.569194	TGAAAGTGGCAGGTCTGTAAA	57.431	42.857	0.00	0.00	0.00	2.01
277	12604	8.267894	GCTTACTGTGGATAATGGATATATGGT	58.732	37.037	0.00	0.00	0.00	3.55
347	12690	4.086706	TGTTCTTCTCCTCCCTTTGTTC	57.913	45.455	0.00	0.00	0.00	3.18
357	12700	2.552743	CTCCCTTTGTTCCTTTTCCGAC	59.447	50.000	0.00	0.00	0.00	4.79
519	14397	5.990996	CAGCCAAATTAAAATCGGGCAATAT	59.009	36.000	15.70	0.00	38.96	1.28
520	14398	5.990996	AGCCAAATTAAAATCGGGCAATATG	59.009	36.000	15.70	0.00	38.96	1.78
521	14399	5.334028	GCCAAATTAAAATCGGGCAATATGC	60.334	40.000	10.88	0.00	44.08	3.14
571	14449	2.175878	TCCAGTGCTTCTTCTCTTGC	57.824	50.000	0.00	0.00	0.00	4.01
772	14690	2.956333	AGATTCCATCACCACGTCGATA	59.044	45.455	0.00	0.00	0.00	2.92
773	14691	3.574396	AGATTCCATCACCACGTCGATAT	59.426	43.478	0.00	0.00	0.00	1.63
883	14803	2.497675	TGATTTTCCTCGTCAGCTAGCT	59.502	45.455	12.68	12.68	0.00	3.32
888	14808	2.932261	TCCTCGTCAGCTAGCTATGAA	58.068	47.619	18.86	2.88	0.00	2.57
1090	16534	3.508840	CCGATGGCGTTTCTGGGC	61.509	66.667	0.00	0.00	35.23	5.36
1134	16578	1.869767	CATTAGCAGCCGGAAGATGAC	59.130	52.381	5.05	0.00	0.00	3.06
1236	16680	1.563435	CGCTTCATGCTATGGCCGAG	61.563	60.000	0.00	0.00	40.11	4.63
1238	16682	0.394192	CTTCATGCTATGGCCGAGGA	59.606	55.000	0.00	0.00	37.74	3.71
1251	16695	4.148825	GAGGAGCCGTGCCGTGAT	62.149	66.667	0.00	0.00	0.00	3.06
1426	16922	1.107945	GGCTCGAGGCTAGAGAGTTT	58.892	55.000	30.02	0.00	41.46	2.66
1427	16923	1.202359	GGCTCGAGGCTAGAGAGTTTG	60.202	57.143	30.02	2.11	41.46	2.93
1433	16937	1.830477	AGGCTAGAGAGTTTGAGGCTG	59.170	52.381	0.00	0.00	42.66	4.85
1479	16984	7.255035	GGTCAGCTACGAGTGTATATTAGACAA	60.255	40.741	0.00	0.00	0.00	3.18
1544	17050	4.398988	TGCCAATGAAATGACAGTGTATCC	59.601	41.667	0.00	0.00	34.67	2.59
1551	17067	0.037697	TGACAGTGTATCCACGTGCC	60.038	55.000	10.91	0.00	46.56	5.01
1553	17069	0.037326	ACAGTGTATCCACGTGCCTG	60.037	55.000	10.91	10.39	46.56	4.85
1664	17497	7.483059	GCTACTGCTGTCATTTTATTTCTGTTC	59.517	37.037	0.00	0.00	36.03	3.18
1679	17512	4.128925	TCTGTTCATGCTAGCGAAGATT	57.871	40.909	10.77	0.00	0.00	2.40
1947	18999	1.065551	GCCATCGCCATGAAAGTAACC	59.934	52.381	0.00	0.00	30.57	2.85
1967	19019	1.201647	CCGTAGATGTGAGGTGTCGTT	59.798	52.381	0.00	0.00	0.00	3.85
1998	19051	0.822811	TGCCAGAACTTTGCAAGCAA	59.177	45.000	2.89	2.89	30.85	3.91
2081	21213	0.678366	AACGAGTGCCACCAAACACA	60.678	50.000	0.00	0.00	39.30	3.72
2191	21337	1.214062	CAAGAGAACGGAGCTCGCT	59.786	57.895	7.83	2.08	43.89	4.93
2275	21426	1.546773	CGAGGGGGAAACAAATGACCA	60.547	52.381	0.00	0.00	0.00	4.02
2328	21479	3.181476	CCCAAAAGGAAACCACTGAACAG	60.181	47.826	0.00	0.00	38.24	3.16
2482	21634	6.938596	TGATAGAGCATGGATATGAGGTTTTG	59.061	38.462	0.00	0.00	36.36	2.44
2500	21652	1.299976	GCTTGGACCAAGGGACGAT	59.700	57.895	30.87	0.00	41.31	3.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	5182	6.417635	CACGTAGTAGTTTTTCGTCTGGTAAA	59.582	38.462	0.00	0.00	41.61	2.01
21	5189	4.540824	AGTCCACGTAGTAGTTTTTCGTC	58.459	43.478	0.00	0.00	41.61	4.20
37	5205	6.371548	TGCAATACACTCAAATAGAAGTCCAC	59.628	38.462	0.00	0.00	0.00	4.02
38	5206	6.472016	TGCAATACACTCAAATAGAAGTCCA	58.528	36.000	0.00	0.00	0.00	4.02
49	5218	7.028962	GCAGAAATACATTGCAATACACTCAA	58.971	34.615	12.53	0.00	37.75	3.02
50	5219	6.150809	TGCAGAAATACATTGCAATACACTCA	59.849	34.615	12.53	0.00	44.13	3.41
103	5272	3.251729	TCAAGATTGTTCTGCTGACTTGC	59.748	43.478	12.98	0.00	35.00	4.01
114	5283	3.928992	TCGTCTCTGCATCAAGATTGTTC	59.071	43.478	0.00	0.00	0.00	3.18
129	5298	1.270907	ATCTGTTGCCCTTCGTCTCT	58.729	50.000	0.00	0.00	0.00	3.10
149	5318	1.968050	GCACCAGTACCTACCGGCAT	61.968	60.000	0.00	0.00	0.00	4.40
156	5325	2.512692	TCTAACGGCACCAGTACCTA	57.487	50.000	0.00	0.00	0.00	3.08
169	5338	6.192137	CGACATAAAAAGCGGAAATTCTAACG	59.808	38.462	0.00	0.00	0.00	3.18
237	12554	8.232913	TCCACAGTAAGCATTTTCTACTTTTT	57.767	30.769	0.00	0.00	0.00	1.94
277	12604	1.373622	CGCACCACACGGTCATGTA	60.374	57.895	0.00	0.00	44.71	2.29
286	12613	1.083015	CGCTTTACACGCACCACAC	60.083	57.895	0.00	0.00	0.00	3.82
347	12690	3.120304	GGACAAATCTTCGTCGGAAAAGG	60.120	47.826	0.00	0.00	32.74	3.11
519	14397	2.143122	GCTCAAATTCGGATATCGGCA	58.857	47.619	5.43	0.00	39.77	5.69
520	14398	2.096218	GTGCTCAAATTCGGATATCGGC	60.096	50.000	5.43	0.00	39.77	5.54
521	14399	2.480419	GGTGCTCAAATTCGGATATCGG	59.520	50.000	3.94	3.94	39.77	4.18
522	14400	3.130633	TGGTGCTCAAATTCGGATATCG	58.869	45.455	0.00	0.00	40.90	2.92
523	14401	3.058639	GCTGGTGCTCAAATTCGGATATC	60.059	47.826	0.00	0.00	36.03	1.63
524	14402	2.880890	GCTGGTGCTCAAATTCGGATAT	59.119	45.455	0.00	0.00	36.03	1.63
525	14403	2.288666	GCTGGTGCTCAAATTCGGATA	58.711	47.619	0.00	0.00	36.03	2.59
526	14404	1.098050	GCTGGTGCTCAAATTCGGAT	58.902	50.000	0.00	0.00	36.03	4.18
533	14411	0.961857	ATCGCATGCTGGTGCTCAAA	60.962	50.000	17.13	0.00	42.88	2.69
571	14449	9.146984	TCTAAATAGTGTTGTATCAAAAGGTCG	57.853	33.333	0.00	0.00	0.00	4.79
643	14528	1.838112	TTTCGCTTGAGGCATCCATT	58.162	45.000	0.00	0.00	41.91	3.16
772	14690	4.689612	ACACACCTACAGTCAAAGACAT	57.310	40.909	0.00	0.00	34.60	3.06
773	14691	4.647853	ACTACACACCTACAGTCAAAGACA	59.352	41.667	0.00	0.00	34.60	3.41
883	14803	0.326595	ACCACCCACGTGCATTCATA	59.673	50.000	10.91	0.00	38.79	2.15
939	14876	4.133796	GCCCGCCAAATGGACAGC	62.134	66.667	2.98	0.00	37.39	4.40
1090	16534	2.321060	GTCACGCGCAATGATCCG	59.679	61.111	13.87	0.00	0.00	4.18
1134	16578	1.990060	TGGCTCTTCTTCCCCTCCG	60.990	63.158	0.00	0.00	0.00	4.63
1251	16695	1.962807	TCTTGAGGTCGTACCCGAAAA	59.037	47.619	1.06	0.00	46.26	2.29
1380	16873	2.564458	CCGGGCGGCAAGTAAAAC	59.436	61.111	12.47	0.00	0.00	2.43
1400	16893	1.075970	TAGCCTCGAGCCATGGTCT	60.076	57.895	14.67	11.07	45.47	3.85
1426	16922	0.322816	GGAGCAAATCACCAGCCTCA	60.323	55.000	0.00	0.00	0.00	3.86
1427	16923	0.034670	AGGAGCAAATCACCAGCCTC	60.035	55.000	0.00	0.00	0.00	4.70
1433	16937	3.467374	CTAGAGGAGGAGCAAATCACC	57.533	52.381	0.00	0.00	0.00	4.02
1454	16959	7.187244	TGTCTAATATACACTCGTAGCTGAC	57.813	40.000	0.00	0.00	0.00	3.51
1479	16984	6.936900	AGTAAGCAACTTGTGATGAACAGTAT	59.063	34.615	0.00	0.00	40.74	2.12
1544	17050	2.530177	CAGACTACATACAGGCACGTG	58.470	52.381	12.28	12.28	0.00	4.49
1551	17067	2.196749	CGGCTTGCAGACTACATACAG	58.803	52.381	0.00	0.00	0.00	2.74
1553	17069	0.931005	GCGGCTTGCAGACTACATAC	59.069	55.000	0.00	0.00	45.45	2.39
1616	17446	1.135083	AGAGTGTATTCTTGGGCGACG	60.135	52.381	0.00	0.00	0.00	5.12
1664	17497	1.600957	CCCACAATCTTCGCTAGCATG	59.399	52.381	16.45	3.88	0.00	4.06
1947	18999	0.809385	ACGACACCTCACATCTACGG	59.191	55.000	0.00	0.00	0.00	4.02
1967	19019	2.306805	AGTTCTGGCATTGTGATCCTCA	59.693	45.455	0.00	0.00	0.00	3.86
1998	19051	1.070786	CCTGTGCGGTGTGTTAGGT	59.929	57.895	0.00	0.00	0.00	3.08
2081	21213	0.540597	GGAGCTCCCAGCCAAAGTTT	60.541	55.000	23.19	0.00	43.77	2.66
2162	21308	3.071023	TCCGTTCTCTTGGTGATGTCTTT	59.929	43.478	0.00	0.00	0.00	2.52
2191	21337	0.606130	ATGTCTGCCGATGTGTTGCA	60.606	50.000	0.00	0.00	0.00	4.08
2328	21479	2.438434	CTTGGGGTCGATGGTGGC	60.438	66.667	0.00	0.00	0.00	5.01
2482	21634	1.026718	CATCGTCCCTTGGTCCAAGC	61.027	60.000	24.19	11.19	39.85	4.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.