Multiple sequence alignment - TraesCS1D01G383800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G383800 chr1D 100.000 6012 0 0 1 6012 458148016 458142005 0.000000e+00 11103.0
1 TraesCS1D01G383800 chr1D 82.533 229 35 5 3209 3435 386257562 386257787 4.750000e-46 196.0
2 TraesCS1D01G383800 chr1D 95.745 94 4 0 5085 5178 458142839 458142932 1.040000e-32 152.0
3 TraesCS1D01G383800 chr1D 91.667 96 8 0 5336 5431 458142585 458142490 3.780000e-27 134.0
4 TraesCS1D01G383800 chr1D 91.667 96 8 0 5432 5527 458142681 458142586 3.780000e-27 134.0
5 TraesCS1D01G383800 chr1A 95.790 4988 172 19 111 5087 550638775 550633815 0.000000e+00 8013.0
6 TraesCS1D01G383800 chr1A 91.216 296 17 1 5426 5712 550633661 550633366 1.570000e-105 394.0
7 TraesCS1D01G383800 chr1A 90.661 257 23 1 5176 5431 550633816 550633560 2.080000e-89 340.0
8 TraesCS1D01G383800 chr1A 81.673 251 30 8 5732 5978 550633391 550633153 1.710000e-45 195.0
9 TraesCS1D01G383800 chr1A 91.429 70 6 0 5486 5555 550633715 550633646 4.960000e-16 97.1
10 TraesCS1D01G383800 chr1A 97.727 44 1 0 5390 5433 550633715 550633672 6.460000e-10 76.8
11 TraesCS1D01G383800 chr1B 94.992 2596 101 11 2505 5085 628618884 628616303 0.000000e+00 4047.0
12 TraesCS1D01G383800 chr1B 97.059 1258 33 2 599 1853 628626587 628625331 0.000000e+00 2115.0
13 TraesCS1D01G383800 chr1B 95.802 262 11 0 1853 2114 628621164 628620903 2.000000e-114 424.0
14 TraesCS1D01G383800 chr1B 95.930 172 7 0 377 548 628626758 628626587 4.590000e-71 279.0
15 TraesCS1D01G383800 chr1B 93.082 159 11 0 110 268 628648013 628647855 3.620000e-57 233.0
16 TraesCS1D01G383800 chr1B 78.477 302 54 7 5589 5883 628615271 628614974 2.860000e-43 187.0
17 TraesCS1D01G383800 chr1B 79.654 231 35 10 5350 5574 628616240 628616016 8.070000e-34 156.0
18 TraesCS1D01G383800 chr1B 95.556 90 2 1 267 354 628626839 628626750 6.280000e-30 143.0
19 TraesCS1D01G383800 chr1B 80.110 181 30 6 5350 5527 628615626 628615449 4.890000e-26 130.0
20 TraesCS1D01G383800 chr1B 89.189 74 5 3 5070 5140 675401966 675402039 8.300000e-14 89.8
21 TraesCS1D01G383800 chr4D 82.269 1190 183 22 934 2105 1821880 1823059 0.000000e+00 1003.0
22 TraesCS1D01G383800 chr4D 75.000 2116 488 36 2816 4909 1823272 1825368 0.000000e+00 939.0
23 TraesCS1D01G383800 chr4D 82.096 229 37 4 3209 3435 475962494 475962268 6.150000e-45 193.0
24 TraesCS1D01G383800 chr4D 81.223 229 40 3 3209 3435 202863199 202863426 1.330000e-41 182.0
25 TraesCS1D01G383800 chr4D 82.266 203 27 6 4803 4998 2889493 2889693 3.730000e-37 167.0
26 TraesCS1D01G383800 chr4D 81.081 185 28 3 4812 4989 2117065 2116881 2.260000e-29 141.0
27 TraesCS1D01G383800 chr4B 82.862 1132 173 18 926 2042 3732368 3733493 0.000000e+00 996.0
28 TraesCS1D01G383800 chr4B 83.648 1058 157 13 990 2037 3484234 3483183 0.000000e+00 981.0
29 TraesCS1D01G383800 chr4B 83.365 1058 161 13 990 2037 3514208 3513156 0.000000e+00 965.0
30 TraesCS1D01G383800 chr4B 82.292 1056 156 13 990 2037 3454120 3453088 0.000000e+00 885.0
31 TraesCS1D01G383800 chr4B 75.632 1662 360 35 2820 4454 3733780 3735423 0.000000e+00 784.0
32 TraesCS1D01G383800 chr4B 90.625 96 7 1 5082 5177 461692152 461692245 6.330000e-25 126.0
33 TraesCS1D01G383800 chr4B 96.610 59 2 0 1979 2037 3426309 3426251 1.380000e-16 99.0
34 TraesCS1D01G383800 chrUn 83.554 1058 159 13 990 2037 48044872 48045924 0.000000e+00 976.0
35 TraesCS1D01G383800 chrUn 83.333 1068 160 15 987 2042 47630216 47631277 0.000000e+00 970.0
36 TraesCS1D01G383800 chrUn 83.459 1058 160 13 990 2037 48075143 48076195 0.000000e+00 970.0
37 TraesCS1D01G383800 chrUn 74.717 2120 482 45 2820 4909 47631565 47633660 0.000000e+00 896.0
38 TraesCS1D01G383800 chrUn 74.174 2118 494 47 2820 4909 47452166 47454258 0.000000e+00 832.0
39 TraesCS1D01G383800 chrUn 73.440 2195 508 64 2842 4998 47949888 47952045 0.000000e+00 754.0
40 TraesCS1D01G383800 chrUn 72.311 1069 248 40 2857 3901 96217812 96216768 2.120000e-74 291.0
41 TraesCS1D01G383800 chrUn 71.737 1111 268 36 2814 3901 96298485 96297398 2.760000e-68 270.0
42 TraesCS1D01G383800 chrUn 70.761 1091 260 44 2857 3920 95985523 95986581 6.150000e-45 193.0
43 TraesCS1D01G383800 chrUn 89.362 47 2 2 5066 5112 27987536 27987493 8.420000e-04 56.5
44 TraesCS1D01G383800 chr5A 75.046 2196 469 59 2802 4948 33929427 33931592 0.000000e+00 946.0
45 TraesCS1D01G383800 chr5A 92.784 97 5 1 5086 5180 662431438 662431342 8.130000e-29 139.0
46 TraesCS1D01G383800 chr5A 92.553 94 5 1 5086 5177 662431345 662431438 3.780000e-27 134.0
47 TraesCS1D01G383800 chr5A 89.899 99 8 2 5086 5184 555588318 555588222 6.330000e-25 126.0
48 TraesCS1D01G383800 chr5A 87.013 77 6 4 5073 5145 569987025 569986949 3.860000e-12 84.2
49 TraesCS1D01G383800 chr3A 73.290 2164 505 67 2793 4924 24012197 24014319 0.000000e+00 726.0
50 TraesCS1D01G383800 chr3A 90.000 100 5 3 5086 5180 509858972 509858873 2.280000e-24 124.0
51 TraesCS1D01G383800 chr3A 86.842 76 8 2 5067 5140 57259497 57259572 3.860000e-12 84.2
52 TraesCS1D01G383800 chr5D 74.577 1774 386 47 2793 4533 43962338 43964079 0.000000e+00 717.0
53 TraesCS1D01G383800 chr3D 76.068 1124 241 26 2810 3920 13179915 13178807 1.460000e-155 560.0
54 TraesCS1D01G383800 chr7D 77.670 515 97 11 3209 3721 45171971 45171473 1.270000e-76 298.0
55 TraesCS1D01G383800 chr7D 82.533 229 36 4 3209 3435 590795792 590795566 1.320000e-46 198.0
56 TraesCS1D01G383800 chr6B 70.293 1535 390 57 2814 4312 47280361 47278857 1.290000e-61 248.0
57 TraesCS1D01G383800 chr6B 91.667 60 2 3 5086 5143 685667282 685667224 4.990000e-11 80.5
58 TraesCS1D01G383800 chr4A 85.890 163 20 2 4808 4967 603047697 603047859 2.880000e-38 171.0
59 TraesCS1D01G383800 chr4A 87.671 73 5 3 5073 5141 29077389 29077461 1.390000e-11 82.4
60 TraesCS1D01G383800 chr2B 87.402 127 11 5 5058 5180 619948796 619948671 2.260000e-29 141.0
61 TraesCS1D01G383800 chr2B 93.617 94 4 1 5086 5177 619948674 619948767 8.130000e-29 139.0
62 TraesCS1D01G383800 chr7A 90.816 98 4 4 5085 5177 136415557 136415460 6.330000e-25 126.0
63 TraesCS1D01G383800 chr2A 90.667 75 2 5 5070 5140 712286575 712286648 1.780000e-15 95.3
64 TraesCS1D01G383800 chr3B 88.158 76 5 3 5067 5140 453164774 453164847 2.980000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G383800 chr1D 458142005 458148016 6011 True 11103.000000 11103 100.000000 1 6012 1 chr1D.!!$R1 6011
1 TraesCS1D01G383800 chr1A 550633153 550638775 5622 True 1519.316667 8013 91.416000 111 5978 6 chr1A.!!$R1 5867
2 TraesCS1D01G383800 chr1B 628614974 628621164 6190 True 988.800000 4047 85.807000 1853 5883 5 chr1B.!!$R2 4030
3 TraesCS1D01G383800 chr1B 628625331 628626839 1508 True 845.666667 2115 96.181667 267 1853 3 chr1B.!!$R3 1586
4 TraesCS1D01G383800 chr4D 1821880 1825368 3488 False 971.000000 1003 78.634500 934 4909 2 chr4D.!!$F3 3975
5 TraesCS1D01G383800 chr4B 3483183 3484234 1051 True 981.000000 981 83.648000 990 2037 1 chr4B.!!$R3 1047
6 TraesCS1D01G383800 chr4B 3513156 3514208 1052 True 965.000000 965 83.365000 990 2037 1 chr4B.!!$R4 1047
7 TraesCS1D01G383800 chr4B 3732368 3735423 3055 False 890.000000 996 79.247000 926 4454 2 chr4B.!!$F2 3528
8 TraesCS1D01G383800 chr4B 3453088 3454120 1032 True 885.000000 885 82.292000 990 2037 1 chr4B.!!$R2 1047
9 TraesCS1D01G383800 chrUn 48044872 48045924 1052 False 976.000000 976 83.554000 990 2037 1 chrUn.!!$F3 1047
10 TraesCS1D01G383800 chrUn 48075143 48076195 1052 False 970.000000 970 83.459000 990 2037 1 chrUn.!!$F4 1047
11 TraesCS1D01G383800 chrUn 47630216 47633660 3444 False 933.000000 970 79.025000 987 4909 2 chrUn.!!$F6 3922
12 TraesCS1D01G383800 chrUn 47452166 47454258 2092 False 832.000000 832 74.174000 2820 4909 1 chrUn.!!$F1 2089
13 TraesCS1D01G383800 chrUn 47949888 47952045 2157 False 754.000000 754 73.440000 2842 4998 1 chrUn.!!$F2 2156
14 TraesCS1D01G383800 chrUn 96216768 96217812 1044 True 291.000000 291 72.311000 2857 3901 1 chrUn.!!$R2 1044
15 TraesCS1D01G383800 chrUn 96297398 96298485 1087 True 270.000000 270 71.737000 2814 3901 1 chrUn.!!$R3 1087
16 TraesCS1D01G383800 chr5A 33929427 33931592 2165 False 946.000000 946 75.046000 2802 4948 1 chr5A.!!$F1 2146
17 TraesCS1D01G383800 chr3A 24012197 24014319 2122 False 726.000000 726 73.290000 2793 4924 1 chr3A.!!$F1 2131
18 TraesCS1D01G383800 chr5D 43962338 43964079 1741 False 717.000000 717 74.577000 2793 4533 1 chr5D.!!$F1 1740
19 TraesCS1D01G383800 chr3D 13178807 13179915 1108 True 560.000000 560 76.068000 2810 3920 1 chr3D.!!$R1 1110
20 TraesCS1D01G383800 chr6B 47278857 47280361 1504 True 248.000000 248 70.293000 2814 4312 1 chr6B.!!$R1 1498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.036875 GGCCTGTTTGAGCCTACACT 59.963 55.000 0.00 0.00 46.14 3.55 F
115 116 0.251341 GCAAGAAGAGGGGCCTTTCA 60.251 55.000 0.84 0.00 0.00 2.69 F
625 628 0.537653 GGTAGTTGGTCTGGAGCTCC 59.462 60.000 26.78 26.78 0.00 4.70 F
1473 1479 0.040514 TTGCCACTGATCGCAAAACG 60.041 50.000 3.60 0.00 41.80 3.60 F
2213 4195 0.692756 TGTCTGTGTGTGGAAGGGGA 60.693 55.000 0.00 0.00 0.00 4.81 F
2356 4342 0.929824 CCGCTTTCTTGTGTGCAACG 60.930 55.000 0.00 0.00 42.39 4.10 F
2357 4343 0.929824 CGCTTTCTTGTGTGCAACGG 60.930 55.000 0.00 0.00 42.39 4.44 F
2486 4472 1.083806 TTCATGCTCGTGATCACCGC 61.084 55.000 20.03 20.94 0.00 5.68 F
2503 4489 1.352056 GCCGAGCATTAAAGTCCGC 59.648 57.895 0.00 0.00 0.00 5.54 F
4248 6311 1.628340 TGGATTGTGTCGACTCCCATT 59.372 47.619 17.92 7.24 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1417 1423 1.829222 CCGGTCTTGGTAGGCTTCTAA 59.171 52.381 0.00 0.00 0.00 2.10 R
1473 1479 3.397482 CGACCTCTCCATCAATGAATCC 58.603 50.000 0.00 0.00 0.00 3.01 R
2486 4472 1.299541 ATGCGGACTTTAATGCTCGG 58.700 50.000 0.00 2.30 0.00 4.63 R
2806 4801 4.935808 AGTACCTGCAAGCAGTTATAACAC 59.064 41.667 19.60 9.15 42.15 3.32 R
3557 5584 2.889045 ACACAGATTCAAGCAATGCTGT 59.111 40.909 9.14 0.00 39.62 4.40 R
4222 6285 1.009829 GTCGACACAATCCATCAGGC 58.990 55.000 11.55 0.00 33.74 4.85 R
4248 6311 6.500041 CGATTGACCTGTAAAAACTCCAAAA 58.500 36.000 0.00 0.00 0.00 2.44 R
4683 6752 5.420409 ACCTCCGAAGTGAATTCATCTTAC 58.580 41.667 12.12 9.58 37.83 2.34 R
4699 6768 2.372264 ACTATAAGCACGAACCTCCGA 58.628 47.619 0.00 0.00 0.00 4.55 R
5287 7360 0.319083 CCATTGCTTTGGCTTCAGCA 59.681 50.000 0.30 2.28 44.43 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.868026 TGCCACGGATTATTCGGG 57.132 55.556 0.00 0.00 0.00 5.14
18 19 2.213280 TGCCACGGATTATTCGGGA 58.787 52.632 0.00 0.00 31.91 5.14
19 20 0.542333 TGCCACGGATTATTCGGGAA 59.458 50.000 0.00 0.00 31.91 3.97
20 21 1.226746 GCCACGGATTATTCGGGAAG 58.773 55.000 0.00 0.00 31.91 3.46
21 22 1.202604 GCCACGGATTATTCGGGAAGA 60.203 52.381 0.00 0.00 31.91 2.87
22 23 2.743838 GCCACGGATTATTCGGGAAGAA 60.744 50.000 0.00 0.00 43.93 2.52
23 24 3.537580 CCACGGATTATTCGGGAAGAAA 58.462 45.455 0.00 0.00 42.91 2.52
24 25 3.560068 CCACGGATTATTCGGGAAGAAAG 59.440 47.826 0.00 0.00 42.91 2.62
25 26 4.189231 CACGGATTATTCGGGAAGAAAGT 58.811 43.478 0.00 0.00 42.91 2.66
26 27 4.034048 CACGGATTATTCGGGAAGAAAGTG 59.966 45.833 0.00 1.65 42.91 3.16
27 28 4.081309 ACGGATTATTCGGGAAGAAAGTGA 60.081 41.667 0.00 0.00 42.91 3.41
28 29 4.873827 CGGATTATTCGGGAAGAAAGTGAA 59.126 41.667 0.00 0.00 42.91 3.18
29 30 5.353123 CGGATTATTCGGGAAGAAAGTGAAA 59.647 40.000 0.00 0.00 42.91 2.69
30 31 6.128117 CGGATTATTCGGGAAGAAAGTGAAAA 60.128 38.462 0.00 0.00 42.91 2.29
31 32 7.251281 GGATTATTCGGGAAGAAAGTGAAAAG 58.749 38.462 0.00 0.00 42.91 2.27
32 33 6.569179 TTATTCGGGAAGAAAGTGAAAAGG 57.431 37.500 0.00 0.00 42.91 3.11
33 34 3.849563 TCGGGAAGAAAGTGAAAAGGA 57.150 42.857 0.00 0.00 0.00 3.36
34 35 4.159244 TCGGGAAGAAAGTGAAAAGGAA 57.841 40.909 0.00 0.00 0.00 3.36
35 36 4.134563 TCGGGAAGAAAGTGAAAAGGAAG 58.865 43.478 0.00 0.00 0.00 3.46
36 37 3.253432 CGGGAAGAAAGTGAAAAGGAAGG 59.747 47.826 0.00 0.00 0.00 3.46
37 38 4.470602 GGGAAGAAAGTGAAAAGGAAGGA 58.529 43.478 0.00 0.00 0.00 3.36
38 39 4.893524 GGGAAGAAAGTGAAAAGGAAGGAA 59.106 41.667 0.00 0.00 0.00 3.36
39 40 5.362717 GGGAAGAAAGTGAAAAGGAAGGAAA 59.637 40.000 0.00 0.00 0.00 3.13
40 41 6.127168 GGGAAGAAAGTGAAAAGGAAGGAAAA 60.127 38.462 0.00 0.00 0.00 2.29
41 42 7.327975 GGAAGAAAGTGAAAAGGAAGGAAAAA 58.672 34.615 0.00 0.00 0.00 1.94
42 43 7.492669 GGAAGAAAGTGAAAAGGAAGGAAAAAG 59.507 37.037 0.00 0.00 0.00 2.27
43 44 7.718334 AGAAAGTGAAAAGGAAGGAAAAAGA 57.282 32.000 0.00 0.00 0.00 2.52
44 45 7.776107 AGAAAGTGAAAAGGAAGGAAAAAGAG 58.224 34.615 0.00 0.00 0.00 2.85
45 46 6.471233 AAGTGAAAAGGAAGGAAAAAGAGG 57.529 37.500 0.00 0.00 0.00 3.69
46 47 4.895889 AGTGAAAAGGAAGGAAAAAGAGGG 59.104 41.667 0.00 0.00 0.00 4.30
47 48 4.039245 GTGAAAAGGAAGGAAAAAGAGGGG 59.961 45.833 0.00 0.00 0.00 4.79
48 49 2.310779 AAGGAAGGAAAAAGAGGGGC 57.689 50.000 0.00 0.00 0.00 5.80
49 50 0.409876 AGGAAGGAAAAAGAGGGGCC 59.590 55.000 0.00 0.00 0.00 5.80
50 51 0.409876 GGAAGGAAAAAGAGGGGCCT 59.590 55.000 0.84 0.00 0.00 5.19
51 52 1.550327 GAAGGAAAAAGAGGGGCCTG 58.450 55.000 0.84 0.00 0.00 4.85
52 53 0.860457 AAGGAAAAAGAGGGGCCTGT 59.140 50.000 0.84 0.00 0.00 4.00
53 54 0.860457 AGGAAAAAGAGGGGCCTGTT 59.140 50.000 0.84 0.00 0.00 3.16
54 55 1.220493 AGGAAAAAGAGGGGCCTGTTT 59.780 47.619 0.84 0.00 40.55 2.83
55 56 1.344438 GGAAAAAGAGGGGCCTGTTTG 59.656 52.381 0.84 0.00 39.10 2.93
56 57 2.316108 GAAAAAGAGGGGCCTGTTTGA 58.684 47.619 0.84 0.00 39.10 2.69
57 58 2.001076 AAAAGAGGGGCCTGTTTGAG 57.999 50.000 0.84 0.00 39.10 3.02
58 59 0.540597 AAAGAGGGGCCTGTTTGAGC 60.541 55.000 0.84 0.00 37.98 4.26
64 65 2.556286 GGCCTGTTTGAGCCTACAC 58.444 57.895 0.00 0.00 46.14 2.90
65 66 0.036875 GGCCTGTTTGAGCCTACACT 59.963 55.000 0.00 0.00 46.14 3.55
66 67 1.443802 GCCTGTTTGAGCCTACACTC 58.556 55.000 0.00 0.00 37.19 3.51
67 68 1.946283 GCCTGTTTGAGCCTACACTCC 60.946 57.143 0.00 0.00 35.72 3.85
68 69 1.347707 CCTGTTTGAGCCTACACTCCA 59.652 52.381 0.00 0.00 35.72 3.86
69 70 2.026822 CCTGTTTGAGCCTACACTCCAT 60.027 50.000 0.00 0.00 35.72 3.41
70 71 3.560025 CCTGTTTGAGCCTACACTCCATT 60.560 47.826 0.00 0.00 35.72 3.16
71 72 4.074970 CTGTTTGAGCCTACACTCCATTT 58.925 43.478 0.00 0.00 35.72 2.32
72 73 4.469657 TGTTTGAGCCTACACTCCATTTT 58.530 39.130 0.00 0.00 35.72 1.82
73 74 5.626142 TGTTTGAGCCTACACTCCATTTTA 58.374 37.500 0.00 0.00 35.72 1.52
74 75 6.245408 TGTTTGAGCCTACACTCCATTTTAT 58.755 36.000 0.00 0.00 35.72 1.40
75 76 6.719370 TGTTTGAGCCTACACTCCATTTTATT 59.281 34.615 0.00 0.00 35.72 1.40
76 77 7.094377 TGTTTGAGCCTACACTCCATTTTATTC 60.094 37.037 0.00 0.00 35.72 1.75
77 78 5.437060 TGAGCCTACACTCCATTTTATTCC 58.563 41.667 0.00 0.00 35.72 3.01
78 79 5.191722 TGAGCCTACACTCCATTTTATTCCT 59.808 40.000 0.00 0.00 35.72 3.36
79 80 6.385759 TGAGCCTACACTCCATTTTATTCCTA 59.614 38.462 0.00 0.00 35.72 2.94
80 81 6.831976 AGCCTACACTCCATTTTATTCCTAG 58.168 40.000 0.00 0.00 0.00 3.02
81 82 6.615726 AGCCTACACTCCATTTTATTCCTAGA 59.384 38.462 0.00 0.00 0.00 2.43
82 83 7.293535 AGCCTACACTCCATTTTATTCCTAGAT 59.706 37.037 0.00 0.00 0.00 1.98
83 84 7.939588 GCCTACACTCCATTTTATTCCTAGATT 59.060 37.037 0.00 0.00 0.00 2.40
84 85 9.853177 CCTACACTCCATTTTATTCCTAGATTT 57.147 33.333 0.00 0.00 0.00 2.17
86 87 8.000780 ACACTCCATTTTATTCCTAGATTTGC 57.999 34.615 0.00 0.00 0.00 3.68
87 88 7.068716 ACACTCCATTTTATTCCTAGATTTGCC 59.931 37.037 0.00 0.00 0.00 4.52
88 89 7.068593 CACTCCATTTTATTCCTAGATTTGCCA 59.931 37.037 0.00 0.00 0.00 4.92
89 90 7.068716 ACTCCATTTTATTCCTAGATTTGCCAC 59.931 37.037 0.00 0.00 0.00 5.01
90 91 7.125391 TCCATTTTATTCCTAGATTTGCCACT 58.875 34.615 0.00 0.00 0.00 4.00
91 92 7.068593 TCCATTTTATTCCTAGATTTGCCACTG 59.931 37.037 0.00 0.00 0.00 3.66
92 93 6.773976 TTTTATTCCTAGATTTGCCACTGG 57.226 37.500 0.00 0.00 0.00 4.00
103 104 3.058160 CCACTGGCCGGCAAGAAG 61.058 66.667 37.65 26.27 0.00 2.85
104 105 2.032528 CACTGGCCGGCAAGAAGA 59.967 61.111 37.65 7.58 0.00 2.87
105 106 2.037136 CACTGGCCGGCAAGAAGAG 61.037 63.158 37.65 18.83 0.00 2.85
106 107 2.437359 CTGGCCGGCAAGAAGAGG 60.437 66.667 27.95 0.00 0.00 3.69
107 108 3.984193 CTGGCCGGCAAGAAGAGGG 62.984 68.421 27.95 0.00 0.00 4.30
108 109 4.803908 GGCCGGCAAGAAGAGGGG 62.804 72.222 30.85 0.00 0.00 4.79
110 111 4.803908 CCGGCAAGAAGAGGGGCC 62.804 72.222 0.00 0.00 42.98 5.80
111 112 3.721706 CGGCAAGAAGAGGGGCCT 61.722 66.667 0.84 0.00 44.23 5.19
112 113 2.766660 GGCAAGAAGAGGGGCCTT 59.233 61.111 0.84 0.00 43.09 4.35
113 114 1.077445 GGCAAGAAGAGGGGCCTTT 59.923 57.895 0.84 0.00 43.09 3.11
114 115 0.967887 GGCAAGAAGAGGGGCCTTTC 60.968 60.000 0.84 5.69 43.09 2.62
115 116 0.251341 GCAAGAAGAGGGGCCTTTCA 60.251 55.000 0.84 0.00 0.00 2.69
119 120 1.563410 AGAAGAGGGGCCTTTCATCAG 59.437 52.381 0.84 0.00 0.00 2.90
134 135 6.146837 CCTTTCATCAGTACAGTCACTTGAAG 59.853 42.308 0.00 0.00 30.75 3.02
171 172 3.118956 GCTCTCTCGATTCAGGAAGGAAA 60.119 47.826 0.00 0.00 0.00 3.13
194 195 4.080129 ACAGCCATGATGTAATGAAGAGGT 60.080 41.667 0.00 0.00 27.33 3.85
235 236 9.282247 CACTAGTTTTGTATTCAATCAATCTGC 57.718 33.333 0.00 0.00 33.32 4.26
237 238 7.230849 AGTTTTGTATTCAATCAATCTGCCA 57.769 32.000 0.00 0.00 33.32 4.92
238 239 7.844009 AGTTTTGTATTCAATCAATCTGCCAT 58.156 30.769 0.00 0.00 33.32 4.40
239 240 7.762615 AGTTTTGTATTCAATCAATCTGCCATG 59.237 33.333 0.00 0.00 33.32 3.66
240 241 6.778834 TTGTATTCAATCAATCTGCCATGT 57.221 33.333 0.00 0.00 0.00 3.21
241 242 6.381481 TGTATTCAATCAATCTGCCATGTC 57.619 37.500 0.00 0.00 0.00 3.06
242 243 5.887035 TGTATTCAATCAATCTGCCATGTCA 59.113 36.000 0.00 0.00 0.00 3.58
243 244 5.925506 ATTCAATCAATCTGCCATGTCAA 57.074 34.783 0.00 0.00 0.00 3.18
244 245 5.925506 TTCAATCAATCTGCCATGTCAAT 57.074 34.783 0.00 0.00 0.00 2.57
245 246 5.925506 TCAATCAATCTGCCATGTCAATT 57.074 34.783 0.00 0.00 0.00 2.32
246 247 7.407393 TTCAATCAATCTGCCATGTCAATTA 57.593 32.000 0.00 0.00 0.00 1.40
247 248 7.034685 TCAATCAATCTGCCATGTCAATTAG 57.965 36.000 0.00 0.00 0.00 1.73
248 249 6.040054 TCAATCAATCTGCCATGTCAATTAGG 59.960 38.462 0.00 0.00 0.00 2.69
253 254 2.214387 GCCATGTCAATTAGGCTTGC 57.786 50.000 0.00 0.00 43.70 4.01
254 255 1.202452 GCCATGTCAATTAGGCTTGCC 60.202 52.381 2.97 2.97 43.70 4.52
476 479 5.105595 CCTTGTTCAATCCAAGAATCCCTTC 60.106 44.000 1.89 0.00 41.44 3.46
487 490 1.803453 AATCCCTTCCTTGCCCTGCA 61.803 55.000 0.00 0.00 36.47 4.41
488 491 2.220786 ATCCCTTCCTTGCCCTGCAG 62.221 60.000 6.78 6.78 40.61 4.41
513 516 9.154632 AGAAAAACAAAAAGGAATACATACCCT 57.845 29.630 0.00 0.00 0.00 4.34
602 605 1.474077 CTTCCACATGCAGTTTAGCCC 59.526 52.381 0.00 0.00 0.00 5.19
625 628 0.537653 GGTAGTTGGTCTGGAGCTCC 59.462 60.000 26.78 26.78 0.00 4.70
626 629 1.267121 GTAGTTGGTCTGGAGCTCCA 58.733 55.000 33.04 33.04 45.30 3.86
632 635 0.980423 GGTCTGGAGCTCCAAACTCT 59.020 55.000 32.80 0.00 46.97 3.24
695 698 2.608016 GGCTAGCTTTGTTGTTGCTTCC 60.608 50.000 15.72 0.00 38.15 3.46
734 737 2.864114 CAGATGGTGCCCTCTGTTG 58.136 57.895 13.22 0.00 35.28 3.33
745 748 3.244422 TGCCCTCTGTTGTATTTCGAGTT 60.244 43.478 0.00 0.00 0.00 3.01
746 749 3.125316 GCCCTCTGTTGTATTTCGAGTTG 59.875 47.826 0.00 0.00 0.00 3.16
748 751 3.997021 CCTCTGTTGTATTTCGAGTTGCT 59.003 43.478 0.00 0.00 0.00 3.91
751 754 6.978659 CCTCTGTTGTATTTCGAGTTGCTATA 59.021 38.462 0.00 0.00 0.00 1.31
752 755 7.043325 CCTCTGTTGTATTTCGAGTTGCTATAC 60.043 40.741 0.00 0.00 0.00 1.47
798 801 7.378461 CAGTTTTGTTTTCACGTATAGCAATGT 59.622 33.333 0.00 0.00 0.00 2.71
898 901 5.482908 ACAGTGAGATGTATGAACCAACTC 58.517 41.667 0.00 0.00 0.00 3.01
1417 1423 5.291971 GTGGCAGTTTCAATTTCATCAAGT 58.708 37.500 0.00 0.00 0.00 3.16
1473 1479 0.040514 TTGCCACTGATCGCAAAACG 60.041 50.000 3.60 0.00 41.80 3.60
1959 1968 1.768684 ATGACACTGTTGCCCGGAGT 61.769 55.000 0.73 0.00 0.00 3.85
2044 2056 3.851976 AGAAGCAGGTCAGTACTTACG 57.148 47.619 0.00 0.00 0.00 3.18
2048 2060 2.233922 AGCAGGTCAGTACTTACGCATT 59.766 45.455 8.99 0.00 0.00 3.56
2078 2090 3.255969 ACACCCGTATTTTAGCGTCAT 57.744 42.857 0.00 0.00 0.00 3.06
2079 2091 2.933906 ACACCCGTATTTTAGCGTCATG 59.066 45.455 0.00 0.00 0.00 3.07
2080 2092 3.191669 CACCCGTATTTTAGCGTCATGA 58.808 45.455 0.00 0.00 0.00 3.07
2132 4114 8.181573 ACATATCACCACGTTGTTAATTTGATC 58.818 33.333 0.00 0.00 0.00 2.92
2213 4195 0.692756 TGTCTGTGTGTGGAAGGGGA 60.693 55.000 0.00 0.00 0.00 4.81
2301 4287 3.589641 TGTTAACTGGTAGAGGGTTCCA 58.410 45.455 7.22 0.00 0.00 3.53
2356 4342 0.929824 CCGCTTTCTTGTGTGCAACG 60.930 55.000 0.00 0.00 42.39 4.10
2357 4343 0.929824 CGCTTTCTTGTGTGCAACGG 60.930 55.000 0.00 0.00 42.39 4.44
2385 4371 7.214467 TGTTATTTCTTCCCATCTTGTTCAC 57.786 36.000 0.00 0.00 0.00 3.18
2395 4381 6.493166 TCCCATCTTGTTCACCTCAATTAAT 58.507 36.000 0.00 0.00 0.00 1.40
2409 4395 9.057089 CACCTCAATTAATTGTATTCCTCTACC 57.943 37.037 23.95 0.00 38.84 3.18
2469 4455 8.764287 CCCAACATGTTTTCTTTTATTGACTTC 58.236 33.333 8.77 0.00 0.00 3.01
2486 4472 1.083806 TTCATGCTCGTGATCACCGC 61.084 55.000 20.03 20.94 0.00 5.68
2492 4478 4.794439 CGTGATCACCGCCGAGCA 62.794 66.667 20.03 0.00 0.00 4.26
2502 4488 1.636340 CGCCGAGCATTAAAGTCCG 59.364 57.895 0.00 0.00 0.00 4.79
2503 4489 1.352056 GCCGAGCATTAAAGTCCGC 59.648 57.895 0.00 0.00 0.00 5.54
2615 4604 4.344359 TTGGTACGCCTTCATATGCATA 57.656 40.909 9.27 9.27 35.27 3.14
2680 4669 7.497579 ACGTATGTGTGGCAATCTAATTTATCA 59.502 33.333 0.00 0.00 0.00 2.15
2684 4673 7.874940 TGTGTGGCAATCTAATTTATCATAGC 58.125 34.615 0.00 0.00 0.00 2.97
2784 4778 3.254166 CACCTAGCCATTGCCAACATATC 59.746 47.826 0.00 0.00 38.69 1.63
2795 4790 3.067106 GCCAACATATCATGTACCCTCG 58.933 50.000 0.00 0.00 44.07 4.63
2806 4801 9.706691 ATATCATGTACCCTCGTTAACTTTATG 57.293 33.333 3.71 0.00 0.00 1.90
3217 5236 6.174049 AGGAAAAAGGTACTACAATGAGCTC 58.826 40.000 6.82 6.82 38.49 4.09
3970 6022 6.992063 AGAGTAGGTGCAAAACAATATCTG 57.008 37.500 0.00 0.00 0.00 2.90
4048 6111 2.159544 CCGAGTCTCTAACGAGGAACAC 60.160 54.545 0.00 0.00 37.86 3.32
4135 6198 1.890489 GGGTATTTTGGGCGTCAACTT 59.110 47.619 0.00 0.00 34.67 2.66
4248 6311 1.628340 TGGATTGTGTCGACTCCCATT 59.372 47.619 17.92 7.24 0.00 3.16
4444 6513 2.289565 GAAGTTAAAGCTATGCCCGCT 58.710 47.619 0.00 0.00 39.94 5.52
4683 6752 3.810941 TGCCCAAAACTTGAGTTACTACG 59.189 43.478 0.00 0.00 37.25 3.51
4699 6768 9.570488 GAGTTACTACGTAAGATGAATTCACTT 57.430 33.333 11.07 16.96 43.62 3.16
4714 6783 0.600255 CACTTCGGAGGTTCGTGCTT 60.600 55.000 0.00 0.00 0.00 3.91
4934 7003 8.673626 TCTATTTTACTCAAGTAAACCGTACG 57.326 34.615 8.69 8.69 46.48 3.67
5062 7134 6.648725 GTCATCTTCCATTCCATTCTAGTAGC 59.351 42.308 0.00 0.00 0.00 3.58
5068 7140 5.840693 TCCATTCCATTCTAGTAGCTCATCA 59.159 40.000 0.00 0.00 0.00 3.07
5090 7162 5.986501 ACTATGCTAGTGCCTAATACTCC 57.013 43.478 0.00 0.00 37.69 3.85
5091 7163 4.773149 ACTATGCTAGTGCCTAATACTCCC 59.227 45.833 0.00 0.00 37.69 4.30
5092 7164 3.330126 TGCTAGTGCCTAATACTCCCT 57.670 47.619 0.00 0.00 38.71 4.20
5093 7165 3.231818 TGCTAGTGCCTAATACTCCCTC 58.768 50.000 0.00 0.00 38.71 4.30
5094 7166 2.563620 GCTAGTGCCTAATACTCCCTCC 59.436 54.545 0.00 0.00 0.00 4.30
5095 7167 1.705873 AGTGCCTAATACTCCCTCCG 58.294 55.000 0.00 0.00 0.00 4.63
5096 7168 1.063114 AGTGCCTAATACTCCCTCCGT 60.063 52.381 0.00 0.00 0.00 4.69
5097 7169 1.761198 GTGCCTAATACTCCCTCCGTT 59.239 52.381 0.00 0.00 0.00 4.44
5098 7170 2.037144 TGCCTAATACTCCCTCCGTTC 58.963 52.381 0.00 0.00 0.00 3.95
5099 7171 2.317973 GCCTAATACTCCCTCCGTTCT 58.682 52.381 0.00 0.00 0.00 3.01
5100 7172 2.036089 GCCTAATACTCCCTCCGTTCTG 59.964 54.545 0.00 0.00 0.00 3.02
5101 7173 3.563223 CCTAATACTCCCTCCGTTCTGA 58.437 50.000 0.00 0.00 0.00 3.27
5102 7174 3.958798 CCTAATACTCCCTCCGTTCTGAA 59.041 47.826 0.00 0.00 0.00 3.02
5103 7175 4.589374 CCTAATACTCCCTCCGTTCTGAAT 59.411 45.833 0.00 0.00 0.00 2.57
5104 7176 5.070580 CCTAATACTCCCTCCGTTCTGAATT 59.929 44.000 0.00 0.00 0.00 2.17
5105 7177 6.267014 CCTAATACTCCCTCCGTTCTGAATTA 59.733 42.308 0.00 0.00 0.00 1.40
5106 7178 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
5107 7179 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
5108 7180 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
5109 7181 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
5110 7182 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
5111 7183 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
5112 7184 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
5113 7185 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
5114 7186 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
5115 7187 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
5116 7188 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
5117 7189 7.837863 TCCGTTCTGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
5118 7190 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
5119 7191 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
5120 7192 9.746711 CGTTCTGAATTACTTGTCTTAGATTTG 57.253 33.333 0.00 0.00 0.00 2.32
5163 7235 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
5164 7236 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
5165 7237 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
5166 7238 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
5270 7343 1.376812 GCAACGGGGAAGGAACGAT 60.377 57.895 0.00 0.00 0.00 3.73
5284 7357 0.393808 AACGATTTATGGCCACCGCT 60.394 50.000 8.16 0.00 34.44 5.52
5287 7360 0.814010 GATTTATGGCCACCGCTCGT 60.814 55.000 8.16 0.00 34.44 4.18
5347 7420 2.709475 GCACACGCCGAATCCATC 59.291 61.111 0.00 0.00 0.00 3.51
5362 7435 2.036256 ATCGCCCTTGCCAAAGCT 59.964 55.556 0.00 0.00 40.80 3.74
5363 7436 1.031571 CATCGCCCTTGCCAAAGCTA 61.032 55.000 0.00 0.00 40.80 3.32
5364 7437 0.749454 ATCGCCCTTGCCAAAGCTAG 60.749 55.000 0.00 0.00 40.98 3.42
5366 7439 0.960364 CGCCCTTGCCAAAGCTAGAA 60.960 55.000 0.00 0.00 43.58 2.10
5380 7453 2.535331 GCTAGAACAGCGAAGAAGGAG 58.465 52.381 0.00 0.00 41.37 3.69
5382 7455 0.681733 AGAACAGCGAAGAAGGAGCA 59.318 50.000 0.00 0.00 0.00 4.26
5383 7456 0.793250 GAACAGCGAAGAAGGAGCAC 59.207 55.000 0.00 0.00 0.00 4.40
5385 7458 1.080501 CAGCGAAGAAGGAGCACGA 60.081 57.895 0.00 0.00 0.00 4.35
5426 8017 1.676967 GCCAAAGCAGTGGAGGAGG 60.677 63.158 9.74 0.00 41.65 4.30
5427 8018 1.676967 CCAAAGCAGTGGAGGAGGC 60.677 63.158 0.00 0.00 41.65 4.70
5468 8059 0.476338 TGCCAAAGCCAGAACAGGTA 59.524 50.000 0.00 0.00 38.69 3.08
5673 8341 1.204146 GAGGTAGAACAGGCCATGGA 58.796 55.000 18.40 0.00 0.00 3.41
5677 8345 2.572095 TAGAACAGGCCATGGACGCG 62.572 60.000 18.40 12.70 0.00 6.01
5712 8380 2.788191 AAAGCAACGGAGGAGGAGCG 62.788 60.000 0.00 0.00 0.00 5.03
5713 8381 4.821589 GCAACGGAGGAGGAGCGG 62.822 72.222 0.00 0.00 0.00 5.52
5714 8382 3.382832 CAACGGAGGAGGAGCGGT 61.383 66.667 0.00 0.00 0.00 5.68
5715 8383 3.382832 AACGGAGGAGGAGCGGTG 61.383 66.667 0.00 0.00 0.00 4.94
5717 8385 3.382832 CGGAGGAGGAGCGGTGTT 61.383 66.667 0.00 0.00 0.00 3.32
5718 8386 2.579738 GGAGGAGGAGCGGTGTTC 59.420 66.667 0.00 0.00 0.00 3.18
5741 8460 4.675029 ACCCCACCGAAGCGAACG 62.675 66.667 0.00 0.00 0.00 3.95
5743 8462 2.259204 CCCACCGAAGCGAACGTA 59.741 61.111 0.00 0.00 0.00 3.57
5784 8506 4.572571 TTCCGCCCACGCCAAAGT 62.573 61.111 0.00 0.00 38.22 2.66
5899 8623 7.588854 CCATGTAAAAGATGTCGATAAGCAATG 59.411 37.037 0.00 0.00 0.00 2.82
5901 8625 7.684670 TGTAAAAGATGTCGATAAGCAATGTC 58.315 34.615 0.00 0.00 0.00 3.06
5902 8626 6.741992 AAAAGATGTCGATAAGCAATGTCA 57.258 33.333 0.00 0.00 0.00 3.58
5903 8627 6.932356 AAAGATGTCGATAAGCAATGTCAT 57.068 33.333 0.00 0.00 0.00 3.06
5904 8628 6.932356 AAGATGTCGATAAGCAATGTCATT 57.068 33.333 0.00 0.00 0.00 2.57
5908 8632 3.876914 GTCGATAAGCAATGTCATTCCCA 59.123 43.478 0.00 0.00 0.00 4.37
5911 8635 5.056480 CGATAAGCAATGTCATTCCCAGTA 58.944 41.667 0.00 0.00 0.00 2.74
5915 8639 4.392940 AGCAATGTCATTCCCAGTATAGC 58.607 43.478 0.00 0.00 0.00 2.97
5916 8640 3.503748 GCAATGTCATTCCCAGTATAGCC 59.496 47.826 0.00 0.00 0.00 3.93
5926 8650 4.880164 TCCCAGTATAGCCTAGTTCAACT 58.120 43.478 0.00 0.00 0.00 3.16
5943 8667 7.603651 AGTTCAACTATCTAAATCTCGTGTGT 58.396 34.615 0.00 0.00 0.00 3.72
5944 8668 7.542477 AGTTCAACTATCTAAATCTCGTGTGTG 59.458 37.037 0.00 0.00 0.00 3.82
5945 8669 7.153217 TCAACTATCTAAATCTCGTGTGTGA 57.847 36.000 0.00 0.00 0.00 3.58
5960 8684 4.149922 CGTGTGTGAGACATTTTATCGTGT 59.850 41.667 0.00 0.00 36.78 4.49
5965 8689 7.439955 TGTGTGAGACATTTTATCGTGTAAGTT 59.560 33.333 0.00 0.00 0.00 2.66
5966 8690 8.280497 GTGTGAGACATTTTATCGTGTAAGTTT 58.720 33.333 0.00 0.00 0.00 2.66
5980 8704 9.953697 ATCGTGTAAGTTTCATCTTATCTACTC 57.046 33.333 0.00 0.00 33.39 2.59
5981 8705 9.175312 TCGTGTAAGTTTCATCTTATCTACTCT 57.825 33.333 0.00 0.00 33.39 3.24
5982 8706 9.440784 CGTGTAAGTTTCATCTTATCTACTCTC 57.559 37.037 0.00 0.00 33.39 3.20
5986 8710 7.833285 AGTTTCATCTTATCTACTCTCTCCC 57.167 40.000 0.00 0.00 0.00 4.30
5987 8711 7.591821 AGTTTCATCTTATCTACTCTCTCCCT 58.408 38.462 0.00 0.00 0.00 4.20
5988 8712 8.729047 AGTTTCATCTTATCTACTCTCTCCCTA 58.271 37.037 0.00 0.00 0.00 3.53
5989 8713 9.528489 GTTTCATCTTATCTACTCTCTCCCTAT 57.472 37.037 0.00 0.00 0.00 2.57
5990 8714 9.747898 TTTCATCTTATCTACTCTCTCCCTATC 57.252 37.037 0.00 0.00 0.00 2.08
5991 8715 8.456221 TCATCTTATCTACTCTCTCCCTATCA 57.544 38.462 0.00 0.00 0.00 2.15
5992 8716 8.895624 TCATCTTATCTACTCTCTCCCTATCAA 58.104 37.037 0.00 0.00 0.00 2.57
5993 8717 9.527157 CATCTTATCTACTCTCTCCCTATCAAA 57.473 37.037 0.00 0.00 0.00 2.69
5999 8723 8.698973 TCTACTCTCTCCCTATCAAATACAAG 57.301 38.462 0.00 0.00 0.00 3.16
6000 8724 8.503573 TCTACTCTCTCCCTATCAAATACAAGA 58.496 37.037 0.00 0.00 0.00 3.02
6001 8725 9.308000 CTACTCTCTCCCTATCAAATACAAGAT 57.692 37.037 0.00 0.00 0.00 2.40
6002 8726 7.961351 ACTCTCTCCCTATCAAATACAAGATG 58.039 38.462 0.00 0.00 0.00 2.90
6003 8727 7.786943 ACTCTCTCCCTATCAAATACAAGATGA 59.213 37.037 0.00 0.00 0.00 2.92
6004 8728 8.733092 TCTCTCCCTATCAAATACAAGATGAT 57.267 34.615 0.00 0.00 37.54 2.45
6005 8729 8.591940 TCTCTCCCTATCAAATACAAGATGATG 58.408 37.037 0.00 0.00 35.53 3.07
6006 8730 8.267620 TCTCCCTATCAAATACAAGATGATGT 57.732 34.615 0.00 0.00 35.53 3.06
6007 8731 8.717717 TCTCCCTATCAAATACAAGATGATGTT 58.282 33.333 0.00 0.00 35.53 2.71
6008 8732 9.347240 CTCCCTATCAAATACAAGATGATGTTT 57.653 33.333 0.00 0.00 35.53 2.83
6009 8733 9.699410 TCCCTATCAAATACAAGATGATGTTTT 57.301 29.630 0.00 0.00 35.53 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.202604 TCTTCCCGAATAATCCGTGGC 60.203 52.381 0.00 0.00 0.00 5.01
2 3 2.902705 TCTTCCCGAATAATCCGTGG 57.097 50.000 0.00 0.00 0.00 4.94
3 4 4.034048 CACTTTCTTCCCGAATAATCCGTG 59.966 45.833 0.00 0.00 0.00 4.94
4 5 4.081309 TCACTTTCTTCCCGAATAATCCGT 60.081 41.667 0.00 0.00 0.00 4.69
7 8 7.120726 TCCTTTTCACTTTCTTCCCGAATAATC 59.879 37.037 0.00 0.00 0.00 1.75
8 9 6.946009 TCCTTTTCACTTTCTTCCCGAATAAT 59.054 34.615 0.00 0.00 0.00 1.28
9 10 6.300703 TCCTTTTCACTTTCTTCCCGAATAA 58.699 36.000 0.00 0.00 0.00 1.40
10 11 5.871834 TCCTTTTCACTTTCTTCCCGAATA 58.128 37.500 0.00 0.00 0.00 1.75
12 13 4.159244 TCCTTTTCACTTTCTTCCCGAA 57.841 40.909 0.00 0.00 0.00 4.30
13 14 3.849563 TCCTTTTCACTTTCTTCCCGA 57.150 42.857 0.00 0.00 0.00 5.14
14 15 3.253432 CCTTCCTTTTCACTTTCTTCCCG 59.747 47.826 0.00 0.00 0.00 5.14
15 16 4.470602 TCCTTCCTTTTCACTTTCTTCCC 58.529 43.478 0.00 0.00 0.00 3.97
16 17 6.465439 TTTCCTTCCTTTTCACTTTCTTCC 57.535 37.500 0.00 0.00 0.00 3.46
17 18 8.251026 TCTTTTTCCTTCCTTTTCACTTTCTTC 58.749 33.333 0.00 0.00 0.00 2.87
18 19 8.134202 TCTTTTTCCTTCCTTTTCACTTTCTT 57.866 30.769 0.00 0.00 0.00 2.52
19 20 7.147828 CCTCTTTTTCCTTCCTTTTCACTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
20 21 6.980978 CCTCTTTTTCCTTCCTTTTCACTTTC 59.019 38.462 0.00 0.00 0.00 2.62
21 22 6.127054 CCCTCTTTTTCCTTCCTTTTCACTTT 60.127 38.462 0.00 0.00 0.00 2.66
22 23 5.363868 CCCTCTTTTTCCTTCCTTTTCACTT 59.636 40.000 0.00 0.00 0.00 3.16
23 24 4.895889 CCCTCTTTTTCCTTCCTTTTCACT 59.104 41.667 0.00 0.00 0.00 3.41
24 25 4.039245 CCCCTCTTTTTCCTTCCTTTTCAC 59.961 45.833 0.00 0.00 0.00 3.18
25 26 4.223144 CCCCTCTTTTTCCTTCCTTTTCA 58.777 43.478 0.00 0.00 0.00 2.69
26 27 3.006967 GCCCCTCTTTTTCCTTCCTTTTC 59.993 47.826 0.00 0.00 0.00 2.29
27 28 2.972713 GCCCCTCTTTTTCCTTCCTTTT 59.027 45.455 0.00 0.00 0.00 2.27
28 29 2.609747 GCCCCTCTTTTTCCTTCCTTT 58.390 47.619 0.00 0.00 0.00 3.11
29 30 1.203187 GGCCCCTCTTTTTCCTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
30 31 0.409876 GGCCCCTCTTTTTCCTTCCT 59.590 55.000 0.00 0.00 0.00 3.36
31 32 0.409876 AGGCCCCTCTTTTTCCTTCC 59.590 55.000 0.00 0.00 0.00 3.46
32 33 1.203063 ACAGGCCCCTCTTTTTCCTTC 60.203 52.381 0.00 0.00 0.00 3.46
33 34 0.860457 ACAGGCCCCTCTTTTTCCTT 59.140 50.000 0.00 0.00 0.00 3.36
34 35 0.860457 AACAGGCCCCTCTTTTTCCT 59.140 50.000 0.00 0.00 0.00 3.36
35 36 1.344438 CAAACAGGCCCCTCTTTTTCC 59.656 52.381 0.00 0.00 0.00 3.13
36 37 2.297315 CTCAAACAGGCCCCTCTTTTTC 59.703 50.000 0.00 0.00 0.00 2.29
37 38 2.319844 CTCAAACAGGCCCCTCTTTTT 58.680 47.619 0.00 0.00 0.00 1.94
38 39 2.001076 CTCAAACAGGCCCCTCTTTT 57.999 50.000 0.00 0.00 0.00 2.27
39 40 0.540597 GCTCAAACAGGCCCCTCTTT 60.541 55.000 0.00 0.00 0.00 2.52
40 41 1.075659 GCTCAAACAGGCCCCTCTT 59.924 57.895 0.00 0.00 0.00 2.85
41 42 2.759795 GCTCAAACAGGCCCCTCT 59.240 61.111 0.00 0.00 0.00 3.69
42 43 2.361737 GGCTCAAACAGGCCCCTC 60.362 66.667 0.00 0.00 42.12 4.30
48 49 1.347707 TGGAGTGTAGGCTCAAACAGG 59.652 52.381 0.00 0.00 37.24 4.00
49 50 2.839486 TGGAGTGTAGGCTCAAACAG 57.161 50.000 0.00 0.00 37.24 3.16
50 51 3.788227 AATGGAGTGTAGGCTCAAACA 57.212 42.857 0.00 0.00 37.24 2.83
51 52 6.759497 ATAAAATGGAGTGTAGGCTCAAAC 57.241 37.500 0.00 0.00 37.24 2.93
52 53 6.377146 GGAATAAAATGGAGTGTAGGCTCAAA 59.623 38.462 0.00 0.00 37.24 2.69
53 54 5.885912 GGAATAAAATGGAGTGTAGGCTCAA 59.114 40.000 0.00 0.00 37.24 3.02
54 55 5.191722 AGGAATAAAATGGAGTGTAGGCTCA 59.808 40.000 0.00 0.00 37.24 4.26
55 56 5.685728 AGGAATAAAATGGAGTGTAGGCTC 58.314 41.667 0.00 0.00 34.89 4.70
56 57 5.717119 AGGAATAAAATGGAGTGTAGGCT 57.283 39.130 0.00 0.00 0.00 4.58
57 58 6.827727 TCTAGGAATAAAATGGAGTGTAGGC 58.172 40.000 0.00 0.00 0.00 3.93
58 59 9.853177 AAATCTAGGAATAAAATGGAGTGTAGG 57.147 33.333 0.00 0.00 0.00 3.18
60 61 9.120538 GCAAATCTAGGAATAAAATGGAGTGTA 57.879 33.333 0.00 0.00 0.00 2.90
61 62 7.068716 GGCAAATCTAGGAATAAAATGGAGTGT 59.931 37.037 0.00 0.00 0.00 3.55
62 63 7.068593 TGGCAAATCTAGGAATAAAATGGAGTG 59.931 37.037 0.00 0.00 0.00 3.51
63 64 7.068716 GTGGCAAATCTAGGAATAAAATGGAGT 59.931 37.037 0.00 0.00 0.00 3.85
64 65 7.286316 AGTGGCAAATCTAGGAATAAAATGGAG 59.714 37.037 0.00 0.00 0.00 3.86
65 66 7.068593 CAGTGGCAAATCTAGGAATAAAATGGA 59.931 37.037 0.00 0.00 0.00 3.41
66 67 7.205297 CAGTGGCAAATCTAGGAATAAAATGG 58.795 38.462 0.00 0.00 0.00 3.16
67 68 7.205297 CCAGTGGCAAATCTAGGAATAAAATG 58.795 38.462 0.00 0.00 0.00 2.32
68 69 7.352079 CCAGTGGCAAATCTAGGAATAAAAT 57.648 36.000 0.00 0.00 0.00 1.82
69 70 6.773976 CCAGTGGCAAATCTAGGAATAAAA 57.226 37.500 0.00 0.00 0.00 1.52
86 87 3.058160 CTTCTTGCCGGCCAGTGG 61.058 66.667 26.77 15.16 0.00 4.00
87 88 2.032528 TCTTCTTGCCGGCCAGTG 59.967 61.111 26.77 18.76 0.00 3.66
88 89 2.348998 CTCTTCTTGCCGGCCAGT 59.651 61.111 26.77 0.00 0.00 4.00
89 90 2.437359 CCTCTTCTTGCCGGCCAG 60.437 66.667 26.77 23.81 0.00 4.85
90 91 4.033776 CCCTCTTCTTGCCGGCCA 62.034 66.667 26.77 13.22 0.00 5.36
91 92 4.803908 CCCCTCTTCTTGCCGGCC 62.804 72.222 26.77 6.44 0.00 6.13
93 94 4.803908 GGCCCCTCTTCTTGCCGG 62.804 72.222 0.00 0.00 33.59 6.13
95 96 0.967887 GAAAGGCCCCTCTTCTTGCC 60.968 60.000 0.00 0.00 44.35 4.52
96 97 0.251341 TGAAAGGCCCCTCTTCTTGC 60.251 55.000 0.00 0.00 0.00 4.01
97 98 2.291153 TGATGAAAGGCCCCTCTTCTTG 60.291 50.000 0.00 0.00 0.00 3.02
98 99 1.995542 TGATGAAAGGCCCCTCTTCTT 59.004 47.619 0.00 0.00 0.00 2.52
99 100 1.563410 CTGATGAAAGGCCCCTCTTCT 59.437 52.381 0.00 0.00 0.00 2.85
100 101 1.283321 ACTGATGAAAGGCCCCTCTTC 59.717 52.381 0.00 4.86 0.00 2.87
101 102 1.376649 ACTGATGAAAGGCCCCTCTT 58.623 50.000 0.00 0.00 0.00 2.85
102 103 1.840635 GTACTGATGAAAGGCCCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
103 104 1.559682 TGTACTGATGAAAGGCCCCTC 59.440 52.381 0.00 0.00 0.00 4.30
104 105 1.561542 CTGTACTGATGAAAGGCCCCT 59.438 52.381 0.00 0.00 0.00 4.79
105 106 1.282157 ACTGTACTGATGAAAGGCCCC 59.718 52.381 0.00 0.00 0.00 5.80
106 107 2.027192 TGACTGTACTGATGAAAGGCCC 60.027 50.000 0.00 0.00 0.00 5.80
107 108 3.003480 GTGACTGTACTGATGAAAGGCC 58.997 50.000 6.77 0.00 0.00 5.19
108 109 3.931578 AGTGACTGTACTGATGAAAGGC 58.068 45.455 6.77 0.00 0.00 4.35
109 110 5.541845 TCAAGTGACTGTACTGATGAAAGG 58.458 41.667 6.77 0.00 0.00 3.11
110 111 6.703607 ACTTCAAGTGACTGTACTGATGAAAG 59.296 38.462 6.77 3.89 30.99 2.62
111 112 6.582636 ACTTCAAGTGACTGTACTGATGAAA 58.417 36.000 6.77 0.00 30.99 2.69
112 113 6.161855 ACTTCAAGTGACTGTACTGATGAA 57.838 37.500 6.77 7.74 30.74 2.57
113 114 5.791336 ACTTCAAGTGACTGTACTGATGA 57.209 39.130 6.77 0.95 0.00 2.92
114 115 6.851222 AAACTTCAAGTGACTGTACTGATG 57.149 37.500 6.77 0.00 0.00 3.07
115 116 7.155328 CCTAAACTTCAAGTGACTGTACTGAT 58.845 38.462 6.77 0.00 0.00 2.90
119 120 5.054477 TGCCTAAACTTCAAGTGACTGTAC 58.946 41.667 0.00 0.00 0.00 2.90
171 172 4.080129 ACCTCTTCATTACATCATGGCTGT 60.080 41.667 6.98 6.98 0.00 4.40
194 195 7.068103 ACAAAACTAGTGATTGGACAATTGTCA 59.932 33.333 33.42 18.80 46.47 3.58
235 236 2.100252 CTGGCAAGCCTAATTGACATGG 59.900 50.000 12.96 0.00 46.84 3.66
237 238 3.091633 ACTGGCAAGCCTAATTGACAT 57.908 42.857 12.96 0.00 46.84 3.06
238 239 2.584835 ACTGGCAAGCCTAATTGACA 57.415 45.000 12.96 0.00 45.94 3.58
239 240 3.316308 CCATACTGGCAAGCCTAATTGAC 59.684 47.826 12.96 0.00 38.77 3.18
240 241 3.201930 TCCATACTGGCAAGCCTAATTGA 59.798 43.478 12.96 2.31 37.47 2.57
241 242 3.554934 TCCATACTGGCAAGCCTAATTG 58.445 45.455 12.96 5.35 37.47 2.32
242 243 3.459598 TCTCCATACTGGCAAGCCTAATT 59.540 43.478 12.96 0.00 37.47 1.40
243 244 3.048600 TCTCCATACTGGCAAGCCTAAT 58.951 45.455 12.96 0.41 37.47 1.73
244 245 2.477245 TCTCCATACTGGCAAGCCTAA 58.523 47.619 12.96 0.00 37.47 2.69
245 246 2.174685 TCTCCATACTGGCAAGCCTA 57.825 50.000 12.96 0.00 37.47 3.93
246 247 1.289160 TTCTCCATACTGGCAAGCCT 58.711 50.000 12.96 0.00 37.47 4.58
247 248 2.128771 TTTCTCCATACTGGCAAGCC 57.871 50.000 3.61 3.61 37.47 4.35
248 249 5.766222 CATATTTTCTCCATACTGGCAAGC 58.234 41.667 0.00 0.00 37.47 4.01
249 250 5.300034 TGCATATTTTCTCCATACTGGCAAG 59.700 40.000 0.00 0.00 37.47 4.01
250 251 5.067674 GTGCATATTTTCTCCATACTGGCAA 59.932 40.000 0.00 0.00 37.47 4.52
251 252 4.580167 GTGCATATTTTCTCCATACTGGCA 59.420 41.667 0.00 0.00 37.47 4.92
252 253 4.022849 GGTGCATATTTTCTCCATACTGGC 60.023 45.833 0.00 0.00 37.47 4.85
253 254 5.132502 TGGTGCATATTTTCTCCATACTGG 58.867 41.667 0.00 0.00 39.43 4.00
254 255 5.824624 ACTGGTGCATATTTTCTCCATACTG 59.175 40.000 0.00 0.00 0.00 2.74
476 479 0.752054 TGTTTTTCTGCAGGGCAAGG 59.248 50.000 15.13 0.00 38.41 3.61
487 490 9.154632 AGGGTATGTATTCCTTTTTGTTTTTCT 57.845 29.630 0.00 0.00 0.00 2.52
488 491 9.203421 CAGGGTATGTATTCCTTTTTGTTTTTC 57.797 33.333 0.00 0.00 0.00 2.29
602 605 0.246635 CTCCAGACCAACTACCCGTG 59.753 60.000 0.00 0.00 0.00 4.94
625 628 5.665459 ACCTTGAATCGATAGGAGAGTTTG 58.335 41.667 17.74 0.00 33.21 2.93
626 629 5.941555 ACCTTGAATCGATAGGAGAGTTT 57.058 39.130 17.74 0.00 33.21 2.66
674 677 2.608016 GGAAGCAACAACAAAGCTAGCC 60.608 50.000 12.13 0.00 37.70 3.93
734 737 6.988109 ATCACGTATAGCAACTCGAAATAC 57.012 37.500 0.00 0.00 0.00 1.89
745 748 5.861787 CCACGAATGAATATCACGTATAGCA 59.138 40.000 0.00 0.00 35.78 3.49
746 749 5.862323 ACCACGAATGAATATCACGTATAGC 59.138 40.000 0.00 0.00 35.78 2.97
748 751 7.427214 TGAACCACGAATGAATATCACGTATA 58.573 34.615 0.00 0.00 35.78 1.47
751 754 4.500127 TGAACCACGAATGAATATCACGT 58.500 39.130 0.00 0.00 37.68 4.49
752 755 4.566759 ACTGAACCACGAATGAATATCACG 59.433 41.667 0.00 0.00 0.00 4.35
1417 1423 1.829222 CCGGTCTTGGTAGGCTTCTAA 59.171 52.381 0.00 0.00 0.00 2.10
1473 1479 3.397482 CGACCTCTCCATCAATGAATCC 58.603 50.000 0.00 0.00 0.00 3.01
1959 1968 5.073428 TGGTGGCAATACACAACTTTCATA 58.927 37.500 0.00 0.00 43.08 2.15
2044 2056 3.650139 ACGGGTGTTATATCGAGAATGC 58.350 45.455 0.00 0.00 0.00 3.56
2048 2060 7.086376 GCTAAAATACGGGTGTTATATCGAGA 58.914 38.462 0.00 0.00 0.00 4.04
2105 2117 7.877003 TCAAATTAACAACGTGGTGATATGTT 58.123 30.769 0.00 0.00 37.86 2.71
2132 4114 7.812669 TGGTAGTCGTATGCAAGTTCATATATG 59.187 37.037 6.36 6.36 32.24 1.78
2183 4165 2.146724 CACAGACACACCCCTCCCA 61.147 63.158 0.00 0.00 0.00 4.37
2184 4166 2.147387 ACACAGACACACCCCTCCC 61.147 63.158 0.00 0.00 0.00 4.30
2301 4287 1.607467 GGAGTGGCTGCCATTTGGT 60.607 57.895 26.22 7.39 35.28 3.67
2356 4342 6.015434 ACAAGATGGGAAGAAATAACAACACC 60.015 38.462 0.00 0.00 0.00 4.16
2357 4343 6.981722 ACAAGATGGGAAGAAATAACAACAC 58.018 36.000 0.00 0.00 0.00 3.32
2385 4371 9.627123 TTGGTAGAGGAATACAATTAATTGAGG 57.373 33.333 30.18 8.60 40.14 3.86
2395 4381 8.089625 TGATGATCTTTGGTAGAGGAATACAA 57.910 34.615 0.00 0.00 36.02 2.41
2456 4442 6.169419 TCACGAGCATGAAGTCAATAAAAG 57.831 37.500 0.00 0.00 0.00 2.27
2469 4455 2.528743 GGCGGTGATCACGAGCATG 61.529 63.158 31.84 15.71 37.37 4.06
2486 4472 1.299541 ATGCGGACTTTAATGCTCGG 58.700 50.000 0.00 2.30 0.00 4.63
2492 4478 7.996385 AGCAATAAAACTATGCGGACTTTAAT 58.004 30.769 0.00 0.00 44.60 1.40
2502 4488 6.726258 AAGGCAAAAGCAATAAAACTATGC 57.274 33.333 0.00 0.00 40.34 3.14
2582 4571 5.632244 AGGCGTACCAAAATATTTTTCGT 57.368 34.783 10.77 11.92 39.06 3.85
2784 4778 6.592607 ACACATAAAGTTAACGAGGGTACATG 59.407 38.462 0.00 0.00 0.00 3.21
2806 4801 4.935808 AGTACCTGCAAGCAGTTATAACAC 59.064 41.667 19.60 9.15 42.15 3.32
3217 5236 9.730705 TCTGGCTCAATAAGATTCCTTAATATG 57.269 33.333 0.00 0.00 38.28 1.78
3356 5383 7.875971 AGAAAACTATGTGATCCAAGTTTGTC 58.124 34.615 15.93 14.90 40.35 3.18
3557 5584 2.889045 ACACAGATTCAAGCAATGCTGT 59.111 40.909 9.14 0.00 39.62 4.40
3970 6022 4.253685 TGCATTCTAAGGTAAGTGCAGTC 58.746 43.478 0.00 0.00 37.63 3.51
4222 6285 1.009829 GTCGACACAATCCATCAGGC 58.990 55.000 11.55 0.00 33.74 4.85
4248 6311 6.500041 CGATTGACCTGTAAAAACTCCAAAA 58.500 36.000 0.00 0.00 0.00 2.44
4683 6752 5.420409 ACCTCCGAAGTGAATTCATCTTAC 58.580 41.667 12.12 9.58 37.83 2.34
4699 6768 2.372264 ACTATAAGCACGAACCTCCGA 58.628 47.619 0.00 0.00 0.00 4.55
4934 7003 1.737838 TCGATGTTTGTCTCCATGCC 58.262 50.000 0.00 0.00 0.00 4.40
5086 7158 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
5087 7159 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
5088 7160 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
5089 7161 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
5090 7162 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
5091 7163 7.313646 TCTAAGACAAGTAATTCAGAACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
5092 7164 7.223260 TCTAAGACAAGTAATTCAGAACGGA 57.777 36.000 0.00 0.00 0.00 4.69
5093 7165 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
5094 7166 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
5137 7209 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
5138 7210 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
5139 7211 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
5140 7212 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
5141 7213 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
5142 7214 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
5143 7215 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
5144 7216 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
5145 7217 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
5146 7218 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
5147 7219 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
5148 7220 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5149 7221 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
5150 7222 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5151 7223 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5152 7224 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5153 7225 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
5154 7226 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
5155 7227 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
5156 7228 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
5157 7229 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
5158 7230 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
5159 7231 2.734755 TATACTCCCTCCGTTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
5160 7232 2.965671 ATATACTCCCTCCGTTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
5161 7233 3.415212 TGTATATACTCCCTCCGTTCCG 58.585 50.000 13.89 0.00 0.00 4.30
5162 7234 5.997384 ATTGTATATACTCCCTCCGTTCC 57.003 43.478 13.89 0.00 0.00 3.62
5163 7235 6.210984 AGGAATTGTATATACTCCCTCCGTTC 59.789 42.308 13.89 6.54 0.00 3.95
5164 7236 6.082707 AGGAATTGTATATACTCCCTCCGTT 58.917 40.000 13.89 0.00 0.00 4.44
5165 7237 5.652324 AGGAATTGTATATACTCCCTCCGT 58.348 41.667 13.89 3.50 0.00 4.69
5166 7238 6.096564 GGTAGGAATTGTATATACTCCCTCCG 59.903 46.154 13.89 0.00 0.00 4.63
5167 7239 6.958192 TGGTAGGAATTGTATATACTCCCTCC 59.042 42.308 13.89 15.13 0.00 4.30
5168 7240 8.611051 ATGGTAGGAATTGTATATACTCCCTC 57.389 38.462 13.89 8.20 0.00 4.30
5169 7241 8.990693 AATGGTAGGAATTGTATATACTCCCT 57.009 34.615 13.89 14.67 0.00 4.20
5170 7242 8.822805 TGAATGGTAGGAATTGTATATACTCCC 58.177 37.037 13.89 9.15 0.00 4.30
5227 7300 2.650813 CTTTAGCTCGGATGGCGGCT 62.651 60.000 11.43 0.00 38.62 5.52
5259 7332 2.357952 GTGGCCATAAATCGTTCCTTCC 59.642 50.000 9.72 0.00 0.00 3.46
5270 7343 1.743623 CACGAGCGGTGGCCATAAA 60.744 57.895 9.72 0.00 43.16 1.40
5284 7357 1.100463 TTGCTTTGGCTTCAGCACGA 61.100 50.000 0.30 0.00 45.77 4.35
5287 7360 0.319083 CCATTGCTTTGGCTTCAGCA 59.681 50.000 0.30 2.28 44.43 4.41
5339 7412 1.037030 TTGGCAAGGGCGATGGATTC 61.037 55.000 0.00 0.00 42.47 2.52
5340 7413 0.614415 TTTGGCAAGGGCGATGGATT 60.614 50.000 0.00 0.00 42.47 3.01
5341 7414 1.000233 TTTGGCAAGGGCGATGGAT 60.000 52.632 0.00 0.00 42.47 3.41
5342 7415 1.678635 CTTTGGCAAGGGCGATGGA 60.679 57.895 0.66 0.00 42.47 3.41
5343 7416 2.887360 CTTTGGCAAGGGCGATGG 59.113 61.111 0.66 0.00 42.47 3.51
5344 7417 1.031571 TAGCTTTGGCAAGGGCGATG 61.032 55.000 11.55 0.00 42.47 3.84
5345 7418 0.749454 CTAGCTTTGGCAAGGGCGAT 60.749 55.000 11.55 3.46 42.47 4.58
5346 7419 1.377202 CTAGCTTTGGCAAGGGCGA 60.377 57.895 11.55 10.01 42.47 5.54
5347 7420 0.960364 TTCTAGCTTTGGCAAGGGCG 60.960 55.000 11.55 4.16 42.47 6.13
5348 7421 0.528017 GTTCTAGCTTTGGCAAGGGC 59.472 55.000 11.55 14.11 41.70 5.19
5362 7435 1.893137 TGCTCCTTCTTCGCTGTTCTA 59.107 47.619 0.00 0.00 0.00 2.10
5363 7436 0.681733 TGCTCCTTCTTCGCTGTTCT 59.318 50.000 0.00 0.00 0.00 3.01
5364 7437 0.793250 GTGCTCCTTCTTCGCTGTTC 59.207 55.000 0.00 0.00 0.00 3.18
5366 7439 1.373497 CGTGCTCCTTCTTCGCTGT 60.373 57.895 0.00 0.00 0.00 4.40
5372 7445 0.674895 GCCACATCGTGCTCCTTCTT 60.675 55.000 0.00 0.00 31.34 2.52
5468 8059 1.071471 CCACACCGTGCTCCTTCTT 59.929 57.895 0.00 0.00 31.34 2.52
5677 8345 1.901650 CTTTCGCTTCGACACTGGCC 61.902 60.000 0.00 0.00 34.89 5.36
5692 8360 1.021920 GCTCCTCCTCCGTTGCTTTC 61.022 60.000 0.00 0.00 0.00 2.62
5699 8367 4.680537 ACACCGCTCCTCCTCCGT 62.681 66.667 0.00 0.00 0.00 4.69
5723 8391 3.047877 GTTCGCTTCGGTGGGGTG 61.048 66.667 0.00 0.00 0.00 4.61
5724 8392 4.675029 CGTTCGCTTCGGTGGGGT 62.675 66.667 0.00 0.00 0.00 4.95
5737 8456 1.728672 CTCCTCCTCCGCTACGTTC 59.271 63.158 0.00 0.00 0.00 3.95
5741 8460 4.273257 GCGCTCCTCCTCCGCTAC 62.273 72.222 0.00 0.00 43.95 3.58
5780 8502 1.594331 GAAGGTGTCGGCTTCACTTT 58.406 50.000 6.13 6.13 37.71 2.66
5836 8558 4.356289 GAAGGCGAGACTCTTTAGACATC 58.644 47.826 0.03 0.00 0.00 3.06
5899 8623 5.304614 TGAACTAGGCTATACTGGGAATGAC 59.695 44.000 0.00 0.00 0.00 3.06
5901 8625 5.808366 TGAACTAGGCTATACTGGGAATG 57.192 43.478 0.00 0.00 0.00 2.67
5902 8626 5.905913 AGTTGAACTAGGCTATACTGGGAAT 59.094 40.000 0.00 0.00 0.00 3.01
5903 8627 5.278061 AGTTGAACTAGGCTATACTGGGAA 58.722 41.667 0.00 0.00 0.00 3.97
5904 8628 4.880164 AGTTGAACTAGGCTATACTGGGA 58.120 43.478 0.00 0.00 0.00 4.37
5915 8639 8.407064 ACACGAGATTTAGATAGTTGAACTAGG 58.593 37.037 11.09 0.00 33.66 3.02
5916 8640 9.227490 CACACGAGATTTAGATAGTTGAACTAG 57.773 37.037 11.09 0.00 33.66 2.57
5926 8650 6.753107 TGTCTCACACACGAGATTTAGATA 57.247 37.500 0.00 0.00 43.69 1.98
5933 8657 5.516696 CGATAAAATGTCTCACACACGAGAT 59.483 40.000 0.00 0.00 43.69 2.75
5935 8659 4.621460 ACGATAAAATGTCTCACACACGAG 59.379 41.667 0.00 0.00 38.04 4.18
5943 8667 8.596271 TGAAACTTACACGATAAAATGTCTCA 57.404 30.769 0.00 0.00 0.00 3.27
5944 8668 9.690434 GATGAAACTTACACGATAAAATGTCTC 57.310 33.333 0.00 0.00 0.00 3.36
5945 8669 9.436957 AGATGAAACTTACACGATAAAATGTCT 57.563 29.630 0.00 0.00 0.00 3.41
5960 8684 9.357161 GGGAGAGAGTAGATAAGATGAAACTTA 57.643 37.037 0.00 0.00 36.89 2.24
5965 8689 8.895624 TGATAGGGAGAGAGTAGATAAGATGAA 58.104 37.037 0.00 0.00 0.00 2.57
5966 8690 8.456221 TGATAGGGAGAGAGTAGATAAGATGA 57.544 38.462 0.00 0.00 0.00 2.92
5973 8697 9.308000 CTTGTATTTGATAGGGAGAGAGTAGAT 57.692 37.037 0.00 0.00 0.00 1.98
5978 8702 8.187913 TCATCTTGTATTTGATAGGGAGAGAG 57.812 38.462 0.00 0.00 0.00 3.20
5979 8703 8.591940 CATCATCTTGTATTTGATAGGGAGAGA 58.408 37.037 0.00 0.00 0.00 3.10
5980 8704 8.373981 ACATCATCTTGTATTTGATAGGGAGAG 58.626 37.037 0.00 0.00 0.00 3.20
5981 8705 8.267620 ACATCATCTTGTATTTGATAGGGAGA 57.732 34.615 0.00 0.00 0.00 3.71
5982 8706 8.915057 AACATCATCTTGTATTTGATAGGGAG 57.085 34.615 0.00 0.00 0.00 4.30
5983 8707 9.699410 AAAACATCATCTTGTATTTGATAGGGA 57.301 29.630 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.