Multiple sequence alignment - TraesCS1D01G383600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G383600 chr1D 100.000 3179 0 0 1 3179 458131985 458135163 0.000000e+00 5871
1 TraesCS1D01G383600 chr1A 87.178 2137 121 73 919 2944 550593848 550591754 0.000000e+00 2287
2 TraesCS1D01G383600 chr1A 79.032 434 42 18 11 421 550594828 550594421 5.260000e-63 252
3 TraesCS1D01G383600 chr1A 90.000 110 7 4 3070 3177 550537852 550537745 4.280000e-29 139
4 TraesCS1D01G383600 chr1B 91.764 1457 77 23 905 2347 628499803 628498376 0.000000e+00 1986
5 TraesCS1D01G383600 chr1B 77.955 626 45 44 2365 2944 628494724 628494146 3.980000e-79 305
6 TraesCS1D01G383600 chr1B 85.448 268 12 5 11 263 628500936 628500681 1.460000e-63 254
7 TraesCS1D01G383600 chr1B 91.538 130 6 3 263 388 628500586 628500458 1.170000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G383600 chr1D 458131985 458135163 3178 False 5871.00 5871 100.00000 1 3179 1 chr1D.!!$F1 3178
1 TraesCS1D01G383600 chr1A 550591754 550594828 3074 True 1269.50 2287 83.10500 11 2944 2 chr1A.!!$R2 2933
2 TraesCS1D01G383600 chr1B 628494146 628500936 6790 True 679.75 1986 86.67625 11 2944 4 chr1B.!!$R1 2933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 576 0.032267 GCCTGTCTCCGCATAGTACC 59.968 60.0 0.00 0.0 0.0 3.34 F
622 841 0.037160 TGCACTGCTGTCATGTCCAT 59.963 50.0 1.98 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1927 0.176680 CGTGGATGAGGGAGTTGGAG 59.823 60.0 0.0 0.0 0.00 3.86 R
2308 2758 0.663688 CGATCTCGGATTCTCGGTGT 59.336 55.0 0.0 0.0 35.37 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.962122 GCGGCATATTGCGGTGCG 62.962 66.667 8.53 1.17 46.21 5.34
135 146 3.909662 CCAACTTGGGCTGGATCG 58.090 61.111 0.00 0.00 34.35 3.69
136 147 1.299648 CCAACTTGGGCTGGATCGA 59.700 57.895 0.00 0.00 34.35 3.59
137 148 0.107017 CCAACTTGGGCTGGATCGAT 60.107 55.000 0.00 0.00 34.35 3.59
138 149 1.303309 CAACTTGGGCTGGATCGATC 58.697 55.000 17.36 17.36 0.00 3.69
170 181 0.869730 AAAATTTCGTCGGGACCGTG 59.130 50.000 10.90 5.12 40.74 4.94
270 285 3.726517 CGCTGTTCCCACGCCTTG 61.727 66.667 0.00 0.00 0.00 3.61
271 286 4.043200 GCTGTTCCCACGCCTTGC 62.043 66.667 0.00 0.00 0.00 4.01
272 287 2.281761 CTGTTCCCACGCCTTGCT 60.282 61.111 0.00 0.00 0.00 3.91
273 288 2.281484 TGTTCCCACGCCTTGCTC 60.281 61.111 0.00 0.00 0.00 4.26
274 289 2.032681 GTTCCCACGCCTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
347 461 3.423154 GCGAGGCCGGTTCAACAG 61.423 66.667 1.90 0.00 36.06 3.16
354 468 2.742372 CGGTTCAACAGCTCCGGG 60.742 66.667 0.00 0.00 39.41 5.73
424 559 1.381522 TCCCGCTTATTTTAACCGCC 58.618 50.000 0.00 0.00 0.00 6.13
425 560 1.065272 TCCCGCTTATTTTAACCGCCT 60.065 47.619 0.00 0.00 0.00 5.52
427 562 1.741145 CCGCTTATTTTAACCGCCTGT 59.259 47.619 0.00 0.00 0.00 4.00
429 564 2.676342 CGCTTATTTTAACCGCCTGTCT 59.324 45.455 0.00 0.00 0.00 3.41
431 566 3.064958 GCTTATTTTAACCGCCTGTCTCC 59.935 47.826 0.00 0.00 0.00 3.71
432 567 1.734163 ATTTTAACCGCCTGTCTCCG 58.266 50.000 0.00 0.00 0.00 4.63
434 569 2.102109 TTTAACCGCCTGTCTCCGCA 62.102 55.000 0.00 0.00 0.00 5.69
435 570 1.895020 TTAACCGCCTGTCTCCGCAT 61.895 55.000 0.00 0.00 0.00 4.73
437 572 2.028190 CCGCCTGTCTCCGCATAG 59.972 66.667 0.00 0.00 0.00 2.23
438 573 2.786495 CCGCCTGTCTCCGCATAGT 61.786 63.158 0.00 0.00 0.00 2.12
439 574 1.452953 CCGCCTGTCTCCGCATAGTA 61.453 60.000 0.00 0.00 0.00 1.82
440 575 0.317938 CGCCTGTCTCCGCATAGTAC 60.318 60.000 0.00 0.00 0.00 2.73
441 576 0.032267 GCCTGTCTCCGCATAGTACC 59.968 60.000 0.00 0.00 0.00 3.34
442 577 0.311165 CCTGTCTCCGCATAGTACCG 59.689 60.000 0.00 0.00 0.00 4.02
443 578 0.311165 CTGTCTCCGCATAGTACCGG 59.689 60.000 0.00 0.00 45.64 5.28
448 583 4.657824 CGCATAGTACCGGCGGGG 62.658 72.222 31.78 12.76 46.46 5.73
462 597 4.777384 GGGGTACGACGTTTTGGT 57.223 55.556 5.50 0.00 0.00 3.67
463 598 2.532186 GGGGTACGACGTTTTGGTC 58.468 57.895 5.50 0.00 0.00 4.02
482 700 2.438075 CAGAAGCTGCCTCCCTGC 60.438 66.667 0.00 0.00 38.55 4.85
483 701 4.093291 AGAAGCTGCCTCCCTGCG 62.093 66.667 0.00 0.00 42.57 5.18
504 722 2.264480 CAAGACGCATGACCCGGA 59.736 61.111 0.73 0.00 0.00 5.14
514 732 0.107214 ATGACCCGGACGCAATCATT 60.107 50.000 0.73 0.00 0.00 2.57
518 736 0.179166 CCCGGACGCAATCATTTGTG 60.179 55.000 0.73 0.00 46.51 3.33
519 737 0.801872 CCGGACGCAATCATTTGTGA 59.198 50.000 0.00 0.00 44.42 3.58
549 767 1.013596 GCCCCAGCAAAACAAAACAC 58.986 50.000 0.00 0.00 39.53 3.32
556 774 4.143137 CCAGCAAAACAAAACACAACAGAC 60.143 41.667 0.00 0.00 0.00 3.51
558 776 3.124466 GCAAAACAAAACACAACAGACCC 59.876 43.478 0.00 0.00 0.00 4.46
560 778 4.608948 AAACAAAACACAACAGACCCAA 57.391 36.364 0.00 0.00 0.00 4.12
573 791 4.816392 ACAGACCCAAGTGTTTTTGTTTC 58.184 39.130 0.00 0.00 0.00 2.78
576 795 5.348451 CAGACCCAAGTGTTTTTGTTTCTTG 59.652 40.000 0.00 0.00 36.34 3.02
578 797 5.616270 ACCCAAGTGTTTTTGTTTCTTGTT 58.384 33.333 0.00 0.00 35.26 2.83
581 800 7.715686 ACCCAAGTGTTTTTGTTTCTTGTTTAA 59.284 29.630 0.00 0.00 35.26 1.52
596 815 7.619964 TCTTGTTTAAATTAAGATCCCCGAC 57.380 36.000 11.58 0.00 0.00 4.79
598 817 5.490159 TGTTTAAATTAAGATCCCCGACGT 58.510 37.500 0.00 0.00 0.00 4.34
601 820 2.596904 ATTAAGATCCCCGACGTGTG 57.403 50.000 0.00 0.00 0.00 3.82
608 827 4.969196 CCCGACGTGTGCTGCACT 62.969 66.667 30.43 13.29 45.57 4.40
609 828 3.705638 CCGACGTGTGCTGCACTG 61.706 66.667 30.43 24.33 45.57 3.66
610 829 4.360027 CGACGTGTGCTGCACTGC 62.360 66.667 30.43 21.80 45.57 4.40
615 834 2.182181 GTGTGCTGCACTGCTGTCA 61.182 57.895 30.43 8.47 44.41 3.58
622 841 0.037160 TGCACTGCTGTCATGTCCAT 59.963 50.000 1.98 0.00 0.00 3.41
623 842 0.731417 GCACTGCTGTCATGTCCATC 59.269 55.000 0.00 0.00 0.00 3.51
628 847 0.097674 GCTGTCATGTCCATCGTTGC 59.902 55.000 0.00 0.00 0.00 4.17
641 860 3.354678 GTTGCCACGACATTGCCT 58.645 55.556 0.00 0.00 0.00 4.75
657 908 0.975887 GCCTCCAAAGCAAAATCCCA 59.024 50.000 0.00 0.00 0.00 4.37
659 910 2.419159 GCCTCCAAAGCAAAATCCCATC 60.419 50.000 0.00 0.00 0.00 3.51
660 911 2.169144 CCTCCAAAGCAAAATCCCATCC 59.831 50.000 0.00 0.00 0.00 3.51
661 912 2.833338 CTCCAAAGCAAAATCCCATCCA 59.167 45.455 0.00 0.00 0.00 3.41
665 916 1.188863 AGCAAAATCCCATCCACTGC 58.811 50.000 0.00 0.00 0.00 4.40
667 918 0.457035 CAAAATCCCATCCACTGCCG 59.543 55.000 0.00 0.00 0.00 5.69
702 1000 3.314635 GCTCTCCGGTATATATACACGGG 59.685 52.174 31.08 25.39 42.30 5.28
705 1003 1.066002 CCGGTATATATACACGGGCGG 59.934 57.143 27.87 23.12 40.35 6.13
707 1005 1.477700 GGTATATATACACGGGCGGCA 59.522 52.381 21.56 0.00 34.98 5.69
743 1054 3.338250 TGCCCACAGACCCCCATC 61.338 66.667 0.00 0.00 0.00 3.51
744 1055 3.017581 GCCCACAGACCCCCATCT 61.018 66.667 0.00 0.00 0.00 2.90
746 1057 2.735772 CCCACAGACCCCCATCTCG 61.736 68.421 0.00 0.00 0.00 4.04
747 1058 2.735772 CCACAGACCCCCATCTCGG 61.736 68.421 0.00 0.00 0.00 4.63
748 1059 3.083997 ACAGACCCCCATCTCGGC 61.084 66.667 0.00 0.00 0.00 5.54
749 1060 4.227134 CAGACCCCCATCTCGGCG 62.227 72.222 0.00 0.00 0.00 6.46
769 1087 3.264845 TCCCCAGCAGAAACCCCC 61.265 66.667 0.00 0.00 0.00 5.40
789 1127 3.224269 CCCCAAAACCCGTAGAGAAAAA 58.776 45.455 0.00 0.00 0.00 1.94
804 1144 0.249280 AAAAACGCCGGGAAAAGCAG 60.249 50.000 2.18 0.00 0.00 4.24
814 1154 3.113386 GAAAAGCAGGATCGGCCGC 62.113 63.158 23.51 7.37 43.43 6.53
837 1198 3.555547 GCGGCAAAACAGAAAATCAAACT 59.444 39.130 0.00 0.00 0.00 2.66
840 1201 4.511454 GGCAAAACAGAAAATCAAACTCCC 59.489 41.667 0.00 0.00 0.00 4.30
842 1203 3.643159 AACAGAAAATCAAACTCCCGC 57.357 42.857 0.00 0.00 0.00 6.13
858 1219 2.126734 GCTGCGCGCAAATTCTGT 60.127 55.556 35.50 0.00 38.92 3.41
860 1221 1.277495 GCTGCGCGCAAATTCTGTTT 61.277 50.000 35.50 0.00 38.92 2.83
862 1223 0.662970 TGCGCGCAAATTCTGTTTCC 60.663 50.000 34.66 0.00 0.00 3.13
863 1224 0.662970 GCGCGCAAATTCTGTTTCCA 60.663 50.000 29.10 0.00 0.00 3.53
864 1225 1.052287 CGCGCAAATTCTGTTTCCAC 58.948 50.000 8.75 0.00 0.00 4.02
865 1226 1.418373 GCGCAAATTCTGTTTCCACC 58.582 50.000 0.30 0.00 0.00 4.61
866 1227 1.934849 GCGCAAATTCTGTTTCCACCC 60.935 52.381 0.30 0.00 0.00 4.61
867 1228 1.339610 CGCAAATTCTGTTTCCACCCA 59.660 47.619 0.00 0.00 0.00 4.51
868 1229 2.754472 GCAAATTCTGTTTCCACCCAC 58.246 47.619 0.00 0.00 0.00 4.61
870 1231 1.616159 AATTCTGTTTCCACCCACGG 58.384 50.000 0.00 0.00 0.00 4.94
871 1232 0.893727 ATTCTGTTTCCACCCACGGC 60.894 55.000 0.00 0.00 0.00 5.68
872 1233 2.969300 TTCTGTTTCCACCCACGGCC 62.969 60.000 0.00 0.00 0.00 6.13
873 1234 4.939368 TGTTTCCACCCACGGCCG 62.939 66.667 26.86 26.86 0.00 6.13
882 1243 4.215742 CCACGGCCGGAGCGATTA 62.216 66.667 31.76 0.00 41.24 1.75
884 1245 3.912907 ACGGCCGGAGCGATTAGG 61.913 66.667 31.76 0.00 41.24 2.69
887 1248 2.029221 GCCGGAGCGATTAGGGTC 59.971 66.667 5.05 0.00 0.00 4.46
890 1251 3.534941 GGAGCGATTAGGGTCCGT 58.465 61.111 0.00 0.00 43.89 4.69
892 1253 1.035139 GGAGCGATTAGGGTCCGTAA 58.965 55.000 6.49 6.49 43.89 3.18
893 1254 1.617357 GGAGCGATTAGGGTCCGTAAT 59.383 52.381 15.20 15.20 43.89 1.89
894 1255 2.821969 GGAGCGATTAGGGTCCGTAATA 59.178 50.000 15.24 0.00 43.89 0.98
895 1256 3.256631 GGAGCGATTAGGGTCCGTAATAA 59.743 47.826 15.24 0.00 43.89 1.40
896 1257 4.262164 GGAGCGATTAGGGTCCGTAATAAA 60.262 45.833 15.24 0.00 43.89 1.40
898 1259 4.343239 AGCGATTAGGGTCCGTAATAAAGT 59.657 41.667 15.24 0.00 0.00 2.66
900 1261 4.986659 CGATTAGGGTCCGTAATAAAGTGG 59.013 45.833 15.24 0.00 0.00 4.00
901 1262 5.452356 CGATTAGGGTCCGTAATAAAGTGGT 60.452 44.000 15.24 0.00 0.00 4.16
902 1263 3.900966 AGGGTCCGTAATAAAGTGGTC 57.099 47.619 0.00 0.00 0.00 4.02
903 1264 2.167075 AGGGTCCGTAATAAAGTGGTCG 59.833 50.000 0.00 0.00 0.00 4.79
904 1265 2.543641 GGTCCGTAATAAAGTGGTCGG 58.456 52.381 0.00 0.00 39.40 4.79
905 1266 2.543641 GTCCGTAATAAAGTGGTCGGG 58.456 52.381 0.00 0.00 38.70 5.14
906 1267 1.481772 TCCGTAATAAAGTGGTCGGGG 59.518 52.381 0.00 0.00 38.70 5.73
912 1293 0.543410 TAAAGTGGTCGGGGCTGAGA 60.543 55.000 0.00 0.00 0.00 3.27
914 1295 4.459089 GTGGTCGGGGCTGAGAGC 62.459 72.222 0.00 0.00 41.46 4.09
941 1335 3.183574 GGCGTATTTTGCAAAGGACAAAC 59.816 43.478 12.41 6.77 36.77 2.93
971 1367 0.836400 TCCCGGCTAATCAGGATCCC 60.836 60.000 8.55 0.00 31.00 3.85
1004 1401 3.089784 CCGCGTTAGCCACATGAC 58.910 61.111 4.92 0.00 41.18 3.06
1046 1443 3.055719 CACCACCATCACCACCGC 61.056 66.667 0.00 0.00 0.00 5.68
1143 1546 4.512484 CAATGACCTCTTCTTCTTCCTCC 58.488 47.826 0.00 0.00 0.00 4.30
1144 1547 3.551635 TGACCTCTTCTTCTTCCTCCT 57.448 47.619 0.00 0.00 0.00 3.69
1145 1548 3.436243 TGACCTCTTCTTCTTCCTCCTC 58.564 50.000 0.00 0.00 0.00 3.71
1146 1549 2.425668 GACCTCTTCTTCTTCCTCCTCG 59.574 54.545 0.00 0.00 0.00 4.63
1147 1550 2.225167 ACCTCTTCTTCTTCCTCCTCGT 60.225 50.000 0.00 0.00 0.00 4.18
1148 1551 2.425668 CCTCTTCTTCTTCCTCCTCGTC 59.574 54.545 0.00 0.00 0.00 4.20
1149 1552 3.352648 CTCTTCTTCTTCCTCCTCGTCT 58.647 50.000 0.00 0.00 0.00 4.18
1150 1553 3.761752 CTCTTCTTCTTCCTCCTCGTCTT 59.238 47.826 0.00 0.00 0.00 3.01
1151 1554 3.759618 TCTTCTTCTTCCTCCTCGTCTTC 59.240 47.826 0.00 0.00 0.00 2.87
1171 1574 2.123033 GCTCCTCCTCCTCCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
1172 1575 2.197324 CTCCTCCTCCTCCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
1524 1948 1.811266 CAACTCCCTCATCCACGCG 60.811 63.158 3.53 3.53 0.00 6.01
1863 2287 1.227999 ACGACATCAAGGCCAACACG 61.228 55.000 5.01 3.78 0.00 4.49
1864 2288 0.948623 CGACATCAAGGCCAACACGA 60.949 55.000 5.01 0.00 0.00 4.35
2064 2488 2.599281 TTCCTCGCCGACCAGACA 60.599 61.111 0.00 0.00 0.00 3.41
2067 2491 2.710902 CCTCGCCGACCAGACATCA 61.711 63.158 0.00 0.00 0.00 3.07
2158 2588 2.575461 GGCTGCCAAGGATGCAAC 59.425 61.111 15.17 0.00 38.46 4.17
2199 2647 1.898574 CGCTGGTGCTTTTCTGGGT 60.899 57.895 0.00 0.00 36.97 4.51
2213 2661 3.075641 GGGTGGGAGAGACGGACC 61.076 72.222 0.00 0.00 0.00 4.46
2215 2663 3.450115 GTGGGAGAGACGGACCGG 61.450 72.222 20.00 0.00 0.00 5.28
2217 2665 3.139469 GGGAGAGACGGACCGGAC 61.139 72.222 20.00 11.88 0.00 4.79
2220 2668 3.965539 GAGAGACGGACCGGACGGA 62.966 68.421 20.00 0.00 38.96 4.69
2230 2678 2.032071 CGGACGGAAGGCTTTGGT 59.968 61.111 0.00 2.12 40.87 3.67
2328 2778 0.661780 CACCGAGAATCCGAGATCGC 60.662 60.000 0.00 0.00 38.18 4.58
2332 2782 1.777101 GAGAATCCGAGATCGCCAAG 58.223 55.000 0.00 0.00 38.18 3.61
2392 6476 4.204799 GAGAAGGGGTTGTGTGTAAGTTT 58.795 43.478 0.00 0.00 0.00 2.66
2394 6478 5.757988 AGAAGGGGTTGTGTGTAAGTTTAA 58.242 37.500 0.00 0.00 0.00 1.52
2396 6480 6.837048 AGAAGGGGTTGTGTGTAAGTTTAATT 59.163 34.615 0.00 0.00 0.00 1.40
2397 6481 8.000127 AGAAGGGGTTGTGTGTAAGTTTAATTA 59.000 33.333 0.00 0.00 0.00 1.40
2398 6482 7.514784 AGGGGTTGTGTGTAAGTTTAATTAC 57.485 36.000 0.00 0.00 36.40 1.89
2515 6618 3.184379 CGCACCACTGTATGTATGTATGC 59.816 47.826 0.00 0.00 0.00 3.14
2517 6620 4.574421 GCACCACTGTATGTATGTATGCAA 59.426 41.667 0.00 0.00 0.00 4.08
2518 6621 5.239306 GCACCACTGTATGTATGTATGCAAT 59.761 40.000 0.00 0.00 0.00 3.56
2519 6622 6.661669 CACCACTGTATGTATGTATGCAATG 58.338 40.000 0.00 0.00 0.00 2.82
2520 6623 6.260714 CACCACTGTATGTATGTATGCAATGT 59.739 38.462 0.00 0.00 0.00 2.71
2523 6626 9.651913 CCACTGTATGTATGTATGCAATGTATA 57.348 33.333 0.00 0.00 0.00 1.47
2563 6670 1.276421 ACTGCCACCACTCATCACTAC 59.724 52.381 0.00 0.00 0.00 2.73
2564 6671 1.552337 CTGCCACCACTCATCACTACT 59.448 52.381 0.00 0.00 0.00 2.57
2565 6672 2.760650 CTGCCACCACTCATCACTACTA 59.239 50.000 0.00 0.00 0.00 1.82
2575 6682 5.360999 CACTCATCACTACTAATCCACTCCA 59.639 44.000 0.00 0.00 0.00 3.86
2590 6697 3.058224 CCACTCCACTCCGTTCAAATTTC 60.058 47.826 0.00 0.00 0.00 2.17
2599 6706 6.302313 CACTCCGTTCAAATTTCGAAACATAC 59.698 38.462 13.81 6.57 0.00 2.39
2600 6707 6.204108 ACTCCGTTCAAATTTCGAAACATACT 59.796 34.615 13.81 0.00 0.00 2.12
2601 6708 7.385752 ACTCCGTTCAAATTTCGAAACATACTA 59.614 33.333 13.81 0.00 0.00 1.82
2613 6720 5.011329 TCGAAACATACTATATGGGACCCAC 59.989 44.000 17.78 0.00 35.80 4.61
2626 6733 1.636148 GACCCACCCTACACTACACA 58.364 55.000 0.00 0.00 0.00 3.72
2631 6738 1.217244 CCCTACACTACACACGGGC 59.783 63.158 0.00 0.00 0.00 6.13
2643 6750 0.317479 ACACGGGCACAGTCTAGAAC 59.683 55.000 0.00 0.00 31.98 3.01
2644 6751 0.389948 CACGGGCACAGTCTAGAACC 60.390 60.000 0.00 0.00 31.98 3.62
2645 6752 0.542232 ACGGGCACAGTCTAGAACCT 60.542 55.000 0.00 0.00 22.90 3.50
2646 6753 0.173708 CGGGCACAGTCTAGAACCTC 59.826 60.000 0.00 0.00 0.00 3.85
2647 6754 0.537653 GGGCACAGTCTAGAACCTCC 59.462 60.000 0.00 0.00 0.00 4.30
2697 6813 2.292267 CATTACCACCTGCTCCATCAC 58.708 52.381 0.00 0.00 0.00 3.06
2699 6815 2.543037 TACCACCTGCTCCATCACTA 57.457 50.000 0.00 0.00 0.00 2.74
2700 6816 0.905357 ACCACCTGCTCCATCACTAC 59.095 55.000 0.00 0.00 0.00 2.73
2703 6819 1.552337 CACCTGCTCCATCACTACTGT 59.448 52.381 0.00 0.00 0.00 3.55
2735 6879 1.274703 ATGCTGTGTGTAGGGGGAGG 61.275 60.000 0.00 0.00 0.00 4.30
2751 6896 0.606673 GAGGAAAAAGAGCGTGGCCT 60.607 55.000 3.32 0.00 0.00 5.19
2843 6988 2.350522 CCATGCTTACTGTGTGACTCC 58.649 52.381 0.00 0.00 0.00 3.85
2865 7010 0.036858 GCTGATTAGCGGGGAGGATC 60.037 60.000 0.00 0.00 40.67 3.36
2895 7042 1.503818 CGTGTGTGTTGGTAGGTGCC 61.504 60.000 0.00 0.00 0.00 5.01
2896 7043 0.464735 GTGTGTGTTGGTAGGTGCCA 60.465 55.000 0.00 0.00 36.62 4.92
2897 7044 0.464735 TGTGTGTTGGTAGGTGCCAC 60.465 55.000 0.00 0.00 38.42 5.01
2898 7045 0.179029 GTGTGTTGGTAGGTGCCACT 60.179 55.000 0.00 0.00 38.42 4.00
2899 7046 0.179032 TGTGTTGGTAGGTGCCACTG 60.179 55.000 0.00 0.00 38.42 3.66
2900 7047 1.228124 TGTTGGTAGGTGCCACTGC 60.228 57.895 0.00 0.00 38.42 4.40
2901 7048 2.031919 TTGGTAGGTGCCACTGCG 59.968 61.111 0.00 0.00 41.78 5.18
2945 7092 3.288809 CTGTTGCCAGCTAGGAAAAAC 57.711 47.619 6.40 7.34 36.38 2.43
2946 7093 2.887152 CTGTTGCCAGCTAGGAAAAACT 59.113 45.455 6.40 0.00 36.38 2.66
2947 7094 2.622942 TGTTGCCAGCTAGGAAAAACTG 59.377 45.455 6.40 0.00 36.38 3.16
2948 7095 2.884639 GTTGCCAGCTAGGAAAAACTGA 59.115 45.455 6.40 0.00 36.38 3.41
2949 7096 2.504367 TGCCAGCTAGGAAAAACTGAC 58.496 47.619 6.40 0.00 41.22 3.51
2950 7097 1.464997 GCCAGCTAGGAAAAACTGACG 59.535 52.381 6.40 0.00 41.22 4.35
2951 7098 2.870435 GCCAGCTAGGAAAAACTGACGA 60.870 50.000 6.40 0.00 41.22 4.20
2952 7099 2.737252 CCAGCTAGGAAAAACTGACGAC 59.263 50.000 0.00 0.00 41.22 4.34
2953 7100 3.555168 CCAGCTAGGAAAAACTGACGACT 60.555 47.826 0.00 0.00 41.22 4.18
2954 7101 3.430218 CAGCTAGGAAAAACTGACGACTG 59.570 47.826 0.00 0.00 31.67 3.51
2955 7102 3.321111 AGCTAGGAAAAACTGACGACTGA 59.679 43.478 0.00 0.00 0.00 3.41
2956 7103 3.429207 GCTAGGAAAAACTGACGACTGAC 59.571 47.826 0.00 0.00 0.00 3.51
2957 7104 3.821421 AGGAAAAACTGACGACTGACT 57.179 42.857 0.00 0.00 0.00 3.41
2958 7105 3.718815 AGGAAAAACTGACGACTGACTC 58.281 45.455 0.00 0.00 0.00 3.36
2959 7106 3.132289 AGGAAAAACTGACGACTGACTCA 59.868 43.478 0.00 0.00 0.00 3.41
2960 7107 3.245519 GGAAAAACTGACGACTGACTCAC 59.754 47.826 0.00 0.00 0.00 3.51
2961 7108 2.121116 AAACTGACGACTGACTCACG 57.879 50.000 0.00 0.00 0.00 4.35
2962 7109 1.306148 AACTGACGACTGACTCACGA 58.694 50.000 0.00 0.00 0.00 4.35
2963 7110 0.587285 ACTGACGACTGACTCACGAC 59.413 55.000 0.00 0.00 0.00 4.34
2964 7111 0.451299 CTGACGACTGACTCACGACG 60.451 60.000 0.00 0.00 0.00 5.12
2965 7112 1.156034 TGACGACTGACTCACGACGT 61.156 55.000 0.00 0.00 36.71 4.34
2966 7113 0.721811 GACGACTGACTCACGACGTG 60.722 60.000 21.88 21.88 34.26 4.49
2967 7114 2.075489 CGACTGACTCACGACGTGC 61.075 63.158 22.99 9.95 32.98 5.34
2968 7115 1.729838 GACTGACTCACGACGTGCC 60.730 63.158 22.99 14.13 32.98 5.01
2969 7116 2.131294 GACTGACTCACGACGTGCCT 62.131 60.000 22.99 9.90 32.98 4.75
2970 7117 1.442857 CTGACTCACGACGTGCCTC 60.443 63.158 22.99 17.98 32.98 4.70
2971 7118 1.857318 CTGACTCACGACGTGCCTCT 61.857 60.000 22.99 4.78 32.98 3.69
2972 7119 1.442857 GACTCACGACGTGCCTCTG 60.443 63.158 22.99 11.94 32.98 3.35
2973 7120 2.126307 CTCACGACGTGCCTCTGG 60.126 66.667 22.99 5.08 32.98 3.86
2974 7121 2.596338 TCACGACGTGCCTCTGGA 60.596 61.111 22.99 0.83 32.98 3.86
2975 7122 2.142357 CTCACGACGTGCCTCTGGAA 62.142 60.000 22.99 2.35 32.98 3.53
2976 7123 1.734477 CACGACGTGCCTCTGGAAG 60.734 63.158 16.06 0.00 0.00 3.46
2977 7124 2.811317 CGACGTGCCTCTGGAAGC 60.811 66.667 0.00 0.00 0.00 3.86
2978 7125 2.435059 GACGTGCCTCTGGAAGCC 60.435 66.667 0.00 0.00 0.00 4.35
2979 7126 3.240134 GACGTGCCTCTGGAAGCCA 62.240 63.158 0.00 0.00 0.00 4.75
2987 7134 3.588336 CTGGAAGCCAGCTCAAGC 58.412 61.111 0.00 0.00 45.13 4.01
2988 7135 2.034687 TGGAAGCCAGCTCAAGCC 59.965 61.111 0.00 0.00 43.38 4.35
2989 7136 3.130160 GGAAGCCAGCTCAAGCCG 61.130 66.667 0.00 0.00 43.38 5.52
2990 7137 2.359230 GAAGCCAGCTCAAGCCGT 60.359 61.111 0.00 0.00 43.38 5.68
2991 7138 2.670934 AAGCCAGCTCAAGCCGTG 60.671 61.111 0.00 0.00 43.38 4.94
2992 7139 3.482232 AAGCCAGCTCAAGCCGTGT 62.482 57.895 0.00 0.00 43.38 4.49
2993 7140 3.730761 GCCAGCTCAAGCCGTGTG 61.731 66.667 0.00 0.00 43.38 3.82
2994 7141 3.730761 CCAGCTCAAGCCGTGTGC 61.731 66.667 0.00 4.34 45.26 4.57
2995 7142 2.974148 CAGCTCAAGCCGTGTGCA 60.974 61.111 12.83 0.00 46.93 4.57
2996 7143 2.203195 AGCTCAAGCCGTGTGCAA 60.203 55.556 12.83 0.00 46.93 4.08
2997 7144 1.601759 AGCTCAAGCCGTGTGCAAT 60.602 52.632 12.83 0.00 46.93 3.56
2998 7145 1.443194 GCTCAAGCCGTGTGCAATG 60.443 57.895 7.06 0.00 44.49 2.82
2999 7146 1.443194 CTCAAGCCGTGTGCAATGC 60.443 57.895 0.00 0.00 44.83 3.56
3000 7147 2.801996 CAAGCCGTGTGCAATGCG 60.802 61.111 0.00 0.00 44.83 4.73
3005 7152 4.465512 CGTGTGCAATGCGGCCTC 62.466 66.667 0.00 0.00 0.00 4.70
3006 7153 4.120331 GTGTGCAATGCGGCCTCC 62.120 66.667 0.00 0.00 0.00 4.30
3022 7169 2.047560 CCGGTCCGGTCAAGAACC 60.048 66.667 23.02 0.00 42.73 3.62
3023 7170 2.047560 CGGTCCGGTCAAGAACCC 60.048 66.667 2.34 0.00 46.27 4.11
3024 7171 2.350134 GGTCCGGTCAAGAACCCC 59.650 66.667 0.00 0.00 46.27 4.95
3025 7172 2.522367 GGTCCGGTCAAGAACCCCA 61.522 63.158 0.00 0.00 46.27 4.96
3026 7173 1.452801 GTCCGGTCAAGAACCCCAA 59.547 57.895 0.00 0.00 46.27 4.12
3027 7174 0.179012 GTCCGGTCAAGAACCCCAAA 60.179 55.000 0.00 0.00 46.27 3.28
3028 7175 0.551879 TCCGGTCAAGAACCCCAAAA 59.448 50.000 0.00 0.00 46.27 2.44
3029 7176 0.958822 CCGGTCAAGAACCCCAAAAG 59.041 55.000 0.00 0.00 46.27 2.27
3030 7177 0.313987 CGGTCAAGAACCCCAAAAGC 59.686 55.000 0.00 0.00 46.27 3.51
3031 7178 0.313987 GGTCAAGAACCCCAAAAGCG 59.686 55.000 0.00 0.00 42.85 4.68
3032 7179 1.029681 GTCAAGAACCCCAAAAGCGT 58.970 50.000 0.00 0.00 0.00 5.07
3033 7180 1.028905 TCAAGAACCCCAAAAGCGTG 58.971 50.000 0.00 0.00 0.00 5.34
3034 7181 0.597377 CAAGAACCCCAAAAGCGTGC 60.597 55.000 0.00 0.00 0.00 5.34
3035 7182 2.050442 GAACCCCAAAAGCGTGCG 60.050 61.111 0.00 0.00 0.00 5.34
3036 7183 3.551887 GAACCCCAAAAGCGTGCGG 62.552 63.158 0.00 0.00 0.00 5.69
3062 7209 2.506472 GGCATCCGAGGGTTCCTC 59.494 66.667 3.96 3.96 46.44 3.71
3070 7217 3.217321 GAGGGTTCCTCTCCTCCTC 57.783 63.158 6.70 0.00 46.41 3.71
3071 7218 0.634465 GAGGGTTCCTCTCCTCCTCT 59.366 60.000 6.70 0.00 46.41 3.69
3072 7219 1.007842 GAGGGTTCCTCTCCTCCTCTT 59.992 57.143 6.70 0.00 46.41 2.85
3073 7220 1.007842 AGGGTTCCTCTCCTCCTCTTC 59.992 57.143 0.00 0.00 0.00 2.87
3074 7221 1.007842 GGGTTCCTCTCCTCCTCTTCT 59.992 57.143 0.00 0.00 0.00 2.85
3075 7222 2.561069 GGGTTCCTCTCCTCCTCTTCTT 60.561 54.545 0.00 0.00 0.00 2.52
3076 7223 3.178046 GGTTCCTCTCCTCCTCTTCTTT 58.822 50.000 0.00 0.00 0.00 2.52
3077 7224 3.585289 GGTTCCTCTCCTCCTCTTCTTTT 59.415 47.826 0.00 0.00 0.00 2.27
3078 7225 4.323180 GGTTCCTCTCCTCCTCTTCTTTTC 60.323 50.000 0.00 0.00 0.00 2.29
3079 7226 3.445987 TCCTCTCCTCCTCTTCTTTTCC 58.554 50.000 0.00 0.00 0.00 3.13
3080 7227 3.078305 TCCTCTCCTCCTCTTCTTTTCCT 59.922 47.826 0.00 0.00 0.00 3.36
3081 7228 4.295238 TCCTCTCCTCCTCTTCTTTTCCTA 59.705 45.833 0.00 0.00 0.00 2.94
3082 7229 4.404394 CCTCTCCTCCTCTTCTTTTCCTAC 59.596 50.000 0.00 0.00 0.00 3.18
3083 7230 4.354662 TCTCCTCCTCTTCTTTTCCTACC 58.645 47.826 0.00 0.00 0.00 3.18
3084 7231 3.097614 TCCTCCTCTTCTTTTCCTACCG 58.902 50.000 0.00 0.00 0.00 4.02
3085 7232 2.832733 CCTCCTCTTCTTTTCCTACCGT 59.167 50.000 0.00 0.00 0.00 4.83
3086 7233 3.261137 CCTCCTCTTCTTTTCCTACCGTT 59.739 47.826 0.00 0.00 0.00 4.44
3087 7234 4.465305 CCTCCTCTTCTTTTCCTACCGTTA 59.535 45.833 0.00 0.00 0.00 3.18
3088 7235 5.397142 TCCTCTTCTTTTCCTACCGTTAC 57.603 43.478 0.00 0.00 0.00 2.50
3089 7236 4.834496 TCCTCTTCTTTTCCTACCGTTACA 59.166 41.667 0.00 0.00 0.00 2.41
3090 7237 4.928020 CCTCTTCTTTTCCTACCGTTACAC 59.072 45.833 0.00 0.00 0.00 2.90
3091 7238 4.549458 TCTTCTTTTCCTACCGTTACACG 58.451 43.478 0.00 0.00 42.11 4.49
3143 7290 2.499685 GGGCACGGCTCGAGTATT 59.500 61.111 15.13 0.00 0.00 1.89
3144 7291 1.153429 GGGCACGGCTCGAGTATTT 60.153 57.895 15.13 0.00 0.00 1.40
3145 7292 1.429148 GGGCACGGCTCGAGTATTTG 61.429 60.000 15.13 7.61 0.00 2.32
3146 7293 0.739813 GGCACGGCTCGAGTATTTGT 60.740 55.000 15.13 2.96 0.00 2.83
3147 7294 1.470285 GGCACGGCTCGAGTATTTGTA 60.470 52.381 15.13 0.00 0.00 2.41
3148 7295 1.587034 GCACGGCTCGAGTATTTGTAC 59.413 52.381 15.13 0.00 0.00 2.90
3149 7296 2.190981 CACGGCTCGAGTATTTGTACC 58.809 52.381 15.13 2.77 0.00 3.34
3150 7297 1.820519 ACGGCTCGAGTATTTGTACCA 59.179 47.619 15.13 0.00 0.00 3.25
3151 7298 2.231964 ACGGCTCGAGTATTTGTACCAA 59.768 45.455 15.13 0.00 0.00 3.67
3152 7299 2.601763 CGGCTCGAGTATTTGTACCAAC 59.398 50.000 15.13 0.00 0.00 3.77
3153 7300 2.601763 GGCTCGAGTATTTGTACCAACG 59.398 50.000 15.13 0.00 0.00 4.10
3154 7301 3.504863 GCTCGAGTATTTGTACCAACGA 58.495 45.455 15.13 0.00 0.00 3.85
3155 7302 3.302699 GCTCGAGTATTTGTACCAACGAC 59.697 47.826 15.13 0.00 0.00 4.34
3156 7303 4.730657 CTCGAGTATTTGTACCAACGACT 58.269 43.478 3.62 0.00 0.00 4.18
3157 7304 4.478699 TCGAGTATTTGTACCAACGACTG 58.521 43.478 0.00 0.00 0.00 3.51
3158 7305 4.022935 TCGAGTATTTGTACCAACGACTGT 60.023 41.667 0.00 0.00 0.00 3.55
3159 7306 4.089493 CGAGTATTTGTACCAACGACTGTG 59.911 45.833 0.00 0.00 0.00 3.66
3160 7307 4.312443 AGTATTTGTACCAACGACTGTGG 58.688 43.478 0.00 0.00 0.00 4.17
3161 7308 1.301423 TTTGTACCAACGACTGTGGC 58.699 50.000 0.00 0.00 0.00 5.01
3162 7309 0.533308 TTGTACCAACGACTGTGGCC 60.533 55.000 0.00 0.00 0.00 5.36
3163 7310 2.025418 GTACCAACGACTGTGGCCG 61.025 63.158 0.00 0.00 0.00 6.13
3164 7311 2.500714 TACCAACGACTGTGGCCGT 61.501 57.895 0.00 0.00 41.14 5.68
3165 7312 2.702751 TACCAACGACTGTGGCCGTG 62.703 60.000 0.00 0.00 39.14 4.94
3166 7313 2.587753 CAACGACTGTGGCCGTGT 60.588 61.111 0.00 0.00 39.14 4.49
3167 7314 2.279918 AACGACTGTGGCCGTGTC 60.280 61.111 11.19 11.19 39.14 3.67
3168 7315 3.083848 AACGACTGTGGCCGTGTCA 62.084 57.895 18.35 6.51 39.14 3.58
3169 7316 2.734723 CGACTGTGGCCGTGTCAG 60.735 66.667 18.35 15.75 35.60 3.51
3170 7317 3.044305 GACTGTGGCCGTGTCAGC 61.044 66.667 14.96 6.69 33.12 4.26
3171 7318 3.521529 GACTGTGGCCGTGTCAGCT 62.522 63.158 14.96 5.31 33.12 4.24
3172 7319 2.740055 CTGTGGCCGTGTCAGCTC 60.740 66.667 0.00 0.00 0.00 4.09
3173 7320 4.314440 TGTGGCCGTGTCAGCTCC 62.314 66.667 0.00 0.00 0.00 4.70
3178 7325 3.374402 CCGTGTCAGCTCCGTCCT 61.374 66.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.745115 TTCGCCTTGGGATGCTTCG 60.745 57.895 0.00 0.00 0.00 3.79
1 2 1.803289 GTTCGCCTTGGGATGCTTC 59.197 57.895 0.00 0.00 0.00 3.86
2 3 2.040544 CGTTCGCCTTGGGATGCTT 61.041 57.895 0.00 0.00 0.00 3.91
3 4 2.436646 CGTTCGCCTTGGGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
4 5 2.332654 AACGTTCGCCTTGGGATGC 61.333 57.895 0.00 0.00 0.00 3.91
5 6 1.501741 CAACGTTCGCCTTGGGATG 59.498 57.895 0.00 0.00 0.00 3.51
6 7 2.332654 GCAACGTTCGCCTTGGGAT 61.333 57.895 0.00 0.00 0.00 3.85
7 8 2.975799 GCAACGTTCGCCTTGGGA 60.976 61.111 0.00 0.00 0.00 4.37
8 9 4.038080 GGCAACGTTCGCCTTGGG 62.038 66.667 25.14 4.46 46.56 4.12
32 33 1.090052 GTTTTCCCGCCATCTCGAGG 61.090 60.000 13.56 0.00 0.00 4.63
37 38 1.745489 GCTCGTTTTCCCGCCATCT 60.745 57.895 0.00 0.00 0.00 2.90
130 141 2.338984 CGGTTCCCGGATCGATCC 59.661 66.667 31.04 31.04 44.15 3.36
389 511 3.154589 GGAACATTCCGTCCAGGTC 57.845 57.895 0.00 0.00 41.99 3.85
424 559 0.311165 CCGGTACTATGCGGAGACAG 59.689 60.000 2.45 0.00 0.00 3.51
425 560 1.731433 GCCGGTACTATGCGGAGACA 61.731 60.000 11.84 0.00 0.00 3.41
427 562 2.549198 CGCCGGTACTATGCGGAGA 61.549 63.158 11.84 0.00 44.29 3.71
432 567 2.202395 TACCCCGCCGGTACTATGC 61.202 63.158 1.90 0.00 45.97 3.14
441 576 4.722855 AAACGTCGTACCCCGCCG 62.723 66.667 0.00 0.00 44.66 6.46
442 577 2.357396 AAAACGTCGTACCCCGCC 60.357 61.111 0.00 0.00 36.19 6.13
443 578 2.670210 CCAAAACGTCGTACCCCGC 61.670 63.158 0.00 0.00 36.19 6.13
445 580 2.532186 GACCAAAACGTCGTACCCC 58.468 57.895 0.00 0.00 0.00 4.95
452 587 0.384353 GCTTCTGCGACCAAAACGTC 60.384 55.000 0.00 0.00 0.00 4.34
455 590 3.461843 CAGCTTCTGCGACCAAAAC 57.538 52.632 0.00 0.00 45.42 2.43
482 700 3.499737 GTCATGCGTCTTGGGCCG 61.500 66.667 0.00 0.00 0.00 6.13
483 701 3.134127 GGTCATGCGTCTTGGGCC 61.134 66.667 0.00 0.00 0.00 5.80
484 702 3.134127 GGGTCATGCGTCTTGGGC 61.134 66.667 0.00 0.00 0.00 5.36
485 703 2.819595 CGGGTCATGCGTCTTGGG 60.820 66.667 0.00 0.00 0.00 4.12
486 704 2.819595 CCGGGTCATGCGTCTTGG 60.820 66.667 0.00 0.00 0.00 3.61
487 705 2.100631 GTCCGGGTCATGCGTCTTG 61.101 63.158 0.00 0.00 0.00 3.02
488 706 2.264794 GTCCGGGTCATGCGTCTT 59.735 61.111 0.00 0.00 0.00 3.01
489 707 4.129737 CGTCCGGGTCATGCGTCT 62.130 66.667 0.00 0.00 0.00 4.18
498 716 0.608035 ACAAATGATTGCGTCCGGGT 60.608 50.000 0.00 0.00 40.34 5.28
504 722 2.159338 GCCATCTCACAAATGATTGCGT 60.159 45.455 0.00 0.00 40.34 5.24
514 732 4.421365 GCTTGGGCCATCTCACAA 57.579 55.556 7.26 0.00 0.00 3.33
534 752 4.143137 GGTCTGTTGTGTTTTGTTTTGCTG 60.143 41.667 0.00 0.00 0.00 4.41
536 754 3.124466 GGGTCTGTTGTGTTTTGTTTTGC 59.876 43.478 0.00 0.00 0.00 3.68
549 767 4.186856 ACAAAAACACTTGGGTCTGTTG 57.813 40.909 0.00 0.00 0.00 3.33
556 774 6.552859 AAACAAGAAACAAAAACACTTGGG 57.447 33.333 0.00 0.00 41.15 4.12
573 791 6.093082 ACGTCGGGGATCTTAATTTAAACAAG 59.907 38.462 0.00 0.00 0.00 3.16
576 795 5.352293 ACACGTCGGGGATCTTAATTTAAAC 59.648 40.000 0.00 0.00 0.00 2.01
578 797 4.871557 CACACGTCGGGGATCTTAATTTAA 59.128 41.667 0.00 0.00 0.00 1.52
581 800 2.901249 CACACGTCGGGGATCTTAATT 58.099 47.619 0.00 0.00 0.00 1.40
598 817 1.228033 ATGACAGCAGTGCAGCACA 60.228 52.632 27.35 13.48 36.74 4.57
601 820 1.500844 GACATGACAGCAGTGCAGC 59.499 57.895 19.20 6.41 0.00 5.25
606 825 0.610174 ACGATGGACATGACAGCAGT 59.390 50.000 0.00 1.44 0.00 4.40
607 826 1.395954 CAACGATGGACATGACAGCAG 59.604 52.381 0.00 0.84 0.00 4.24
608 827 1.441738 CAACGATGGACATGACAGCA 58.558 50.000 0.00 0.00 0.00 4.41
609 828 0.097674 GCAACGATGGACATGACAGC 59.902 55.000 0.00 0.00 0.00 4.40
610 829 0.729116 GGCAACGATGGACATGACAG 59.271 55.000 0.00 0.00 0.00 3.51
628 847 0.523072 CTTTGGAGGCAATGTCGTGG 59.477 55.000 0.00 0.00 0.00 4.94
636 855 1.347378 GGGATTTTGCTTTGGAGGCAA 59.653 47.619 0.00 0.00 46.12 4.52
639 858 2.169144 GGATGGGATTTTGCTTTGGAGG 59.831 50.000 0.00 0.00 0.00 4.30
641 860 2.566724 GTGGATGGGATTTTGCTTTGGA 59.433 45.455 0.00 0.00 0.00 3.53
676 927 1.022735 ATATATACCGGAGAGCGGCG 58.977 55.000 9.46 0.51 0.00 6.46
683 934 2.032550 CGCCCGTGTATATATACCGGAG 59.967 54.545 32.48 26.35 43.49 4.63
687 938 1.477700 TGCCGCCCGTGTATATATACC 59.522 52.381 18.20 9.89 32.33 2.73
726 1037 3.338250 GATGGGGGTCTGTGGGCA 61.338 66.667 0.00 0.00 0.00 5.36
727 1038 3.017581 AGATGGGGGTCTGTGGGC 61.018 66.667 0.00 0.00 0.00 5.36
728 1039 2.735772 CGAGATGGGGGTCTGTGGG 61.736 68.421 0.00 0.00 0.00 4.61
741 1052 2.835431 CTGGGGAGACGCCGAGAT 60.835 66.667 0.00 0.00 43.93 2.75
746 1057 3.254024 TTTCTGCTGGGGAGACGCC 62.254 63.158 0.00 0.00 43.93 5.68
747 1058 2.035442 GTTTCTGCTGGGGAGACGC 61.035 63.158 0.00 0.00 44.99 5.19
748 1059 1.376037 GGTTTCTGCTGGGGAGACG 60.376 63.158 0.00 0.00 0.00 4.18
749 1060 1.002011 GGGTTTCTGCTGGGGAGAC 60.002 63.158 0.00 0.00 0.00 3.36
769 1087 3.304190 CGTTTTTCTCTACGGGTTTTGGG 60.304 47.826 0.00 0.00 34.30 4.12
770 1088 3.850740 GCGTTTTTCTCTACGGGTTTTGG 60.851 47.826 0.00 0.00 38.17 3.28
771 1089 3.294102 GCGTTTTTCTCTACGGGTTTTG 58.706 45.455 0.00 0.00 38.17 2.44
773 1091 1.875514 GGCGTTTTTCTCTACGGGTTT 59.124 47.619 0.00 0.00 38.17 3.27
774 1092 1.516161 GGCGTTTTTCTCTACGGGTT 58.484 50.000 0.00 0.00 38.17 4.11
776 1094 1.356527 CCGGCGTTTTTCTCTACGGG 61.357 60.000 6.01 0.00 38.17 5.28
777 1095 1.356527 CCCGGCGTTTTTCTCTACGG 61.357 60.000 6.01 0.00 38.17 4.02
780 1098 2.547299 TTTCCCGGCGTTTTTCTCTA 57.453 45.000 6.01 0.00 0.00 2.43
783 1121 0.031585 GCTTTTCCCGGCGTTTTTCT 59.968 50.000 6.01 0.00 0.00 2.52
789 1127 3.268103 ATCCTGCTTTTCCCGGCGT 62.268 57.895 6.01 0.00 0.00 5.68
814 1154 1.764851 TGATTTTCTGTTTTGCCGCG 58.235 45.000 0.00 0.00 0.00 6.46
815 1155 3.555547 AGTTTGATTTTCTGTTTTGCCGC 59.444 39.130 0.00 0.00 0.00 6.53
816 1156 4.209080 GGAGTTTGATTTTCTGTTTTGCCG 59.791 41.667 0.00 0.00 0.00 5.69
817 1157 4.511454 GGGAGTTTGATTTTCTGTTTTGCC 59.489 41.667 0.00 0.00 0.00 4.52
819 1159 4.209080 GCGGGAGTTTGATTTTCTGTTTTG 59.791 41.667 0.00 0.00 0.00 2.44
823 1184 2.554032 CAGCGGGAGTTTGATTTTCTGT 59.446 45.455 0.00 0.00 0.00 3.41
826 1187 1.729149 CGCAGCGGGAGTTTGATTTTC 60.729 52.381 7.00 0.00 0.00 2.29
842 1203 0.704551 GAAACAGAATTTGCGCGCAG 59.295 50.000 34.25 23.19 0.00 5.18
850 1211 1.960689 CCGTGGGTGGAAACAGAATTT 59.039 47.619 0.00 0.00 44.46 1.82
853 1214 1.527380 GCCGTGGGTGGAAACAGAA 60.527 57.895 0.00 0.00 44.46 3.02
856 1217 4.939368 CGGCCGTGGGTGGAAACA 62.939 66.667 19.50 0.00 38.70 2.83
865 1226 4.215742 TAATCGCTCCGGCCGTGG 62.216 66.667 26.12 17.04 34.44 4.94
866 1227 2.658593 CTAATCGCTCCGGCCGTG 60.659 66.667 26.12 17.52 34.44 4.94
867 1228 3.912907 CCTAATCGCTCCGGCCGT 61.913 66.667 26.12 5.81 34.44 5.68
868 1229 4.664677 CCCTAATCGCTCCGGCCG 62.665 72.222 21.04 21.04 34.44 6.13
870 1231 2.029221 GACCCTAATCGCTCCGGC 59.971 66.667 0.00 0.00 0.00 6.13
871 1232 2.735237 GGACCCTAATCGCTCCGG 59.265 66.667 0.00 0.00 0.00 5.14
872 1233 2.335369 CGGACCCTAATCGCTCCG 59.665 66.667 0.00 0.00 39.78 4.63
873 1234 1.035139 TTACGGACCCTAATCGCTCC 58.965 55.000 0.00 0.00 0.00 4.70
874 1235 4.510038 TTATTACGGACCCTAATCGCTC 57.490 45.455 0.00 0.00 0.00 5.03
877 1238 4.986659 CCACTTTATTACGGACCCTAATCG 59.013 45.833 0.00 0.00 0.00 3.34
879 1240 5.452356 CGACCACTTTATTACGGACCCTAAT 60.452 44.000 1.95 1.95 0.00 1.73
880 1241 4.142182 CGACCACTTTATTACGGACCCTAA 60.142 45.833 0.00 0.00 0.00 2.69
881 1242 3.381272 CGACCACTTTATTACGGACCCTA 59.619 47.826 0.00 0.00 0.00 3.53
882 1243 2.167075 CGACCACTTTATTACGGACCCT 59.833 50.000 0.00 0.00 0.00 4.34
884 1245 2.543641 CCGACCACTTTATTACGGACC 58.456 52.381 0.00 0.00 42.40 4.46
887 1248 1.944032 CCCCGACCACTTTATTACGG 58.056 55.000 0.00 0.00 40.03 4.02
888 1249 1.134610 AGCCCCGACCACTTTATTACG 60.135 52.381 0.00 0.00 0.00 3.18
889 1250 2.093341 TCAGCCCCGACCACTTTATTAC 60.093 50.000 0.00 0.00 0.00 1.89
890 1251 2.169769 CTCAGCCCCGACCACTTTATTA 59.830 50.000 0.00 0.00 0.00 0.98
892 1253 0.541863 CTCAGCCCCGACCACTTTAT 59.458 55.000 0.00 0.00 0.00 1.40
893 1254 0.543410 TCTCAGCCCCGACCACTTTA 60.543 55.000 0.00 0.00 0.00 1.85
894 1255 1.831652 CTCTCAGCCCCGACCACTTT 61.832 60.000 0.00 0.00 0.00 2.66
895 1256 2.203788 TCTCAGCCCCGACCACTT 60.204 61.111 0.00 0.00 0.00 3.16
896 1257 2.681778 CTCTCAGCCCCGACCACT 60.682 66.667 0.00 0.00 0.00 4.00
912 1293 2.112815 GCAAAATACGCCTCCCGCT 61.113 57.895 0.00 0.00 41.76 5.52
914 1295 0.523966 TTTGCAAAATACGCCTCCCG 59.476 50.000 10.02 0.00 44.21 5.14
916 1297 1.816224 TCCTTTGCAAAATACGCCTCC 59.184 47.619 13.84 0.00 0.00 4.30
928 1322 1.110442 CCCTGTGTTTGTCCTTTGCA 58.890 50.000 0.00 0.00 0.00 4.08
991 1388 0.328258 AGGGTGGTCATGTGGCTAAC 59.672 55.000 0.00 0.00 0.00 2.34
1004 1401 2.421739 CCCGATTAGCGAGGGTGG 59.578 66.667 0.00 0.00 44.57 4.61
1143 1546 1.134175 GAGGAGGAGCAAGAAGACGAG 59.866 57.143 0.00 0.00 0.00 4.18
1144 1547 1.178276 GAGGAGGAGCAAGAAGACGA 58.822 55.000 0.00 0.00 0.00 4.20
1145 1548 0.174617 GGAGGAGGAGCAAGAAGACG 59.825 60.000 0.00 0.00 0.00 4.18
1146 1549 1.480545 GAGGAGGAGGAGCAAGAAGAC 59.519 57.143 0.00 0.00 0.00 3.01
1147 1550 1.621072 GGAGGAGGAGGAGCAAGAAGA 60.621 57.143 0.00 0.00 0.00 2.87
1148 1551 0.829990 GGAGGAGGAGGAGCAAGAAG 59.170 60.000 0.00 0.00 0.00 2.85
1149 1552 0.415429 AGGAGGAGGAGGAGCAAGAA 59.585 55.000 0.00 0.00 0.00 2.52
1150 1553 0.032615 GAGGAGGAGGAGGAGCAAGA 60.033 60.000 0.00 0.00 0.00 3.02
1151 1554 1.048160 GGAGGAGGAGGAGGAGCAAG 61.048 65.000 0.00 0.00 0.00 4.01
1425 1849 2.042435 AGGGAGCGGAAGGAGGAG 60.042 66.667 0.00 0.00 0.00 3.69
1503 1927 0.176680 CGTGGATGAGGGAGTTGGAG 59.823 60.000 0.00 0.00 0.00 3.86
1794 2218 3.141488 AGGTACTCGCCCAGCTCG 61.141 66.667 0.00 0.00 0.00 5.03
1876 2300 4.988598 CTTGGACACCTGCGCCGT 62.989 66.667 4.18 0.00 0.00 5.68
1878 2302 2.045926 ATCTTGGACACCTGCGCC 60.046 61.111 4.18 0.00 0.00 6.53
1889 2313 3.282157 CCATGCGCCGGATCTTGG 61.282 66.667 5.05 9.76 0.00 3.61
2064 2488 3.001902 ATCGCCGTGACCGTGTGAT 62.002 57.895 0.00 0.00 33.00 3.06
2067 2491 3.676605 TCATCGCCGTGACCGTGT 61.677 61.111 0.00 0.00 0.00 4.49
2158 2588 3.792047 CACCACCATGTCGCAGCG 61.792 66.667 9.06 9.06 0.00 5.18
2199 2647 3.654143 TCCGGTCCGTCTCTCCCA 61.654 66.667 11.06 0.00 0.00 4.37
2213 2661 2.032071 ACCAAAGCCTTCCGTCCG 59.968 61.111 0.00 0.00 0.00 4.79
2215 2663 1.228154 ACCACCAAAGCCTTCCGTC 60.228 57.895 0.00 0.00 0.00 4.79
2217 2665 2.268076 CCACCACCAAAGCCTTCCG 61.268 63.158 0.00 0.00 0.00 4.30
2220 2668 1.153756 CCTCCACCACCAAAGCCTT 59.846 57.895 0.00 0.00 0.00 4.35
2230 2678 1.149627 CGGTCAAAACCCTCCACCA 59.850 57.895 0.00 0.00 43.21 4.17
2308 2758 0.663688 CGATCTCGGATTCTCGGTGT 59.336 55.000 0.00 0.00 35.37 4.16
2328 2778 4.104383 AGCCTATCTCTCTCTCTCTTGG 57.896 50.000 0.00 0.00 0.00 3.61
2332 2782 5.228945 ACACTAGCCTATCTCTCTCTCTC 57.771 47.826 0.00 0.00 0.00 3.20
2394 6478 7.982354 GGCTCAGTTCAGTAATCAGTAAGTAAT 59.018 37.037 0.00 0.00 0.00 1.89
2396 6480 6.404403 CGGCTCAGTTCAGTAATCAGTAAGTA 60.404 42.308 0.00 0.00 0.00 2.24
2397 6481 5.622460 CGGCTCAGTTCAGTAATCAGTAAGT 60.622 44.000 0.00 0.00 0.00 2.24
2398 6482 4.800993 CGGCTCAGTTCAGTAATCAGTAAG 59.199 45.833 0.00 0.00 0.00 2.34
2418 6506 1.374758 CACTCACTCACCCTTCGGC 60.375 63.158 0.00 0.00 0.00 5.54
2515 6618 5.463061 TGACATGACGACTGCATATACATTG 59.537 40.000 0.00 0.00 0.00 2.82
2517 6620 5.200368 TGACATGACGACTGCATATACAT 57.800 39.130 0.00 0.00 0.00 2.29
2518 6621 4.647424 TGACATGACGACTGCATATACA 57.353 40.909 0.00 0.00 0.00 2.29
2519 6622 4.984785 ACATGACATGACGACTGCATATAC 59.015 41.667 22.19 0.00 0.00 1.47
2520 6623 5.200368 ACATGACATGACGACTGCATATA 57.800 39.130 22.19 0.00 0.00 0.86
2523 6626 2.391616 ACATGACATGACGACTGCAT 57.608 45.000 22.19 0.00 0.00 3.96
2525 6628 2.600420 CAGTACATGACATGACGACTGC 59.400 50.000 22.19 2.89 34.73 4.40
2526 6629 2.600420 GCAGTACATGACATGACGACTG 59.400 50.000 27.27 27.27 39.58 3.51
2527 6630 2.417379 GGCAGTACATGACATGACGACT 60.417 50.000 22.19 16.83 36.67 4.18
2528 6631 1.927174 GGCAGTACATGACATGACGAC 59.073 52.381 22.19 15.06 36.67 4.34
2529 6632 1.548269 TGGCAGTACATGACATGACGA 59.452 47.619 22.19 4.08 44.15 4.20
2530 6633 2.008752 TGGCAGTACATGACATGACG 57.991 50.000 22.19 11.83 44.15 4.35
2563 6670 2.496070 TGAACGGAGTGGAGTGGATTAG 59.504 50.000 0.00 0.00 45.00 1.73
2564 6671 2.531771 TGAACGGAGTGGAGTGGATTA 58.468 47.619 0.00 0.00 45.00 1.75
2565 6672 1.348064 TGAACGGAGTGGAGTGGATT 58.652 50.000 0.00 0.00 45.00 3.01
2590 6697 5.235516 GTGGGTCCCATATAGTATGTTTCG 58.764 45.833 15.49 0.00 35.28 3.46
2613 6720 1.217244 GCCCGTGTGTAGTGTAGGG 59.783 63.158 0.00 0.00 41.65 3.53
2621 6728 0.885879 CTAGACTGTGCCCGTGTGTA 59.114 55.000 0.00 0.00 0.00 2.90
2626 6733 0.542232 AGGTTCTAGACTGTGCCCGT 60.542 55.000 0.00 0.00 0.00 5.28
2631 6738 2.104170 GAGGGGAGGTTCTAGACTGTG 58.896 57.143 0.00 0.00 0.00 3.66
2680 6795 2.108168 GTAGTGATGGAGCAGGTGGTA 58.892 52.381 0.00 0.00 0.00 3.25
2697 6813 2.995466 TTTCGTCACCGGTACAGTAG 57.005 50.000 6.87 0.00 33.95 2.57
2699 6815 1.938016 GCATTTCGTCACCGGTACAGT 60.938 52.381 6.87 0.00 33.95 3.55
2700 6816 0.719465 GCATTTCGTCACCGGTACAG 59.281 55.000 6.87 0.56 33.95 2.74
2703 6819 0.319083 ACAGCATTTCGTCACCGGTA 59.681 50.000 6.87 0.00 33.95 4.02
2724 6840 1.633945 GCTCTTTTTCCTCCCCCTACA 59.366 52.381 0.00 0.00 0.00 2.74
2735 6879 1.172812 ACCAGGCCACGCTCTTTTTC 61.173 55.000 5.01 0.00 0.00 2.29
2759 6904 2.751436 GTCCACCACGGCATGCAT 60.751 61.111 21.36 3.56 33.14 3.96
2768 6913 0.104304 ACACGTCAAGAGTCCACCAC 59.896 55.000 0.00 0.00 0.00 4.16
2797 6942 2.022195 CAATCATCCCAACTGCCAGAG 58.978 52.381 0.00 0.00 0.00 3.35
2944 7091 0.587285 GTCGTGAGTCAGTCGTCAGT 59.413 55.000 0.00 0.00 0.00 3.41
2945 7092 0.451299 CGTCGTGAGTCAGTCGTCAG 60.451 60.000 0.00 0.00 0.00 3.51
2946 7093 1.156034 ACGTCGTGAGTCAGTCGTCA 61.156 55.000 0.00 0.00 0.00 4.35
2947 7094 0.721811 CACGTCGTGAGTCAGTCGTC 60.722 60.000 20.75 3.16 35.23 4.20
2948 7095 1.278937 CACGTCGTGAGTCAGTCGT 59.721 57.895 20.75 10.14 35.23 4.34
2949 7096 2.075489 GCACGTCGTGAGTCAGTCG 61.075 63.158 28.83 1.44 35.23 4.18
2950 7097 1.729838 GGCACGTCGTGAGTCAGTC 60.730 63.158 28.83 8.83 35.23 3.51
2951 7098 2.131294 GAGGCACGTCGTGAGTCAGT 62.131 60.000 28.83 5.50 35.23 3.41
2952 7099 1.442857 GAGGCACGTCGTGAGTCAG 60.443 63.158 28.83 1.34 35.23 3.51
2953 7100 1.897137 AGAGGCACGTCGTGAGTCA 60.897 57.895 28.83 0.00 35.23 3.41
2954 7101 1.442857 CAGAGGCACGTCGTGAGTC 60.443 63.158 28.83 21.41 35.23 3.36
2955 7102 2.645567 CAGAGGCACGTCGTGAGT 59.354 61.111 28.83 14.26 35.23 3.41
2956 7103 2.126307 CCAGAGGCACGTCGTGAG 60.126 66.667 28.83 11.50 35.23 3.51
2957 7104 2.142357 CTTCCAGAGGCACGTCGTGA 62.142 60.000 28.83 2.89 35.23 4.35
2958 7105 1.734477 CTTCCAGAGGCACGTCGTG 60.734 63.158 21.02 21.02 36.51 4.35
2959 7106 2.651361 CTTCCAGAGGCACGTCGT 59.349 61.111 0.00 0.00 0.00 4.34
2960 7107 2.811317 GCTTCCAGAGGCACGTCG 60.811 66.667 0.00 0.00 33.19 5.12
2971 7118 2.034687 GGCTTGAGCTGGCTTCCA 59.965 61.111 0.00 0.00 41.70 3.53
2972 7119 3.130160 CGGCTTGAGCTGGCTTCC 61.130 66.667 3.85 0.00 43.47 3.46
2979 7126 1.601759 ATTGCACACGGCTTGAGCT 60.602 52.632 13.88 0.00 42.00 4.09
2980 7127 1.443194 CATTGCACACGGCTTGAGC 60.443 57.895 6.46 6.46 45.15 4.26
2981 7128 1.443194 GCATTGCACACGGCTTGAG 60.443 57.895 3.15 0.00 45.15 3.02
2982 7129 2.644418 GCATTGCACACGGCTTGA 59.356 55.556 3.15 0.00 45.15 3.02
2983 7130 2.801996 CGCATTGCACACGGCTTG 60.802 61.111 9.69 0.00 45.15 4.01
2984 7131 4.041917 CCGCATTGCACACGGCTT 62.042 61.111 9.69 0.00 45.15 4.35
2988 7135 4.465512 GAGGCCGCATTGCACACG 62.466 66.667 9.69 0.00 0.00 4.49
2989 7136 4.120331 GGAGGCCGCATTGCACAC 62.120 66.667 9.31 0.00 0.00 3.82
3013 7160 1.029681 ACGCTTTTGGGGTTCTTGAC 58.970 50.000 0.00 0.00 37.90 3.18
3014 7161 1.028905 CACGCTTTTGGGGTTCTTGA 58.971 50.000 0.00 0.00 39.13 3.02
3015 7162 0.597377 GCACGCTTTTGGGGTTCTTG 60.597 55.000 0.00 0.00 39.13 3.02
3016 7163 1.739667 GCACGCTTTTGGGGTTCTT 59.260 52.632 0.00 0.00 39.13 2.52
3017 7164 2.551912 CGCACGCTTTTGGGGTTCT 61.552 57.895 0.00 0.00 39.13 3.01
3018 7165 2.050442 CGCACGCTTTTGGGGTTC 60.050 61.111 0.00 0.00 39.13 3.62
3019 7166 3.601685 CCGCACGCTTTTGGGGTT 61.602 61.111 5.15 0.00 43.14 4.11
3023 7170 4.101790 ATCGCCGCACGCTTTTGG 62.102 61.111 0.00 0.00 43.23 3.28
3024 7171 2.574212 GATCGCCGCACGCTTTTG 60.574 61.111 0.00 0.00 43.23 2.44
3025 7172 4.147322 CGATCGCCGCACGCTTTT 62.147 61.111 0.26 0.00 43.23 2.27
3045 7192 2.506472 GAGGAACCCTCGGATGCC 59.494 66.667 0.00 0.00 41.08 4.40
3053 7200 1.007842 GAAGAGGAGGAGAGGAACCCT 59.992 57.143 0.00 0.00 36.03 4.34
3054 7201 1.007842 AGAAGAGGAGGAGAGGAACCC 59.992 57.143 0.00 0.00 0.00 4.11
3055 7202 2.543037 AGAAGAGGAGGAGAGGAACC 57.457 55.000 0.00 0.00 0.00 3.62
3056 7203 4.323180 GGAAAAGAAGAGGAGGAGAGGAAC 60.323 50.000 0.00 0.00 0.00 3.62
3057 7204 3.841255 GGAAAAGAAGAGGAGGAGAGGAA 59.159 47.826 0.00 0.00 0.00 3.36
3058 7205 3.078305 AGGAAAAGAAGAGGAGGAGAGGA 59.922 47.826 0.00 0.00 0.00 3.71
3059 7206 3.449918 AGGAAAAGAAGAGGAGGAGAGG 58.550 50.000 0.00 0.00 0.00 3.69
3060 7207 4.404394 GGTAGGAAAAGAAGAGGAGGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
3061 7208 4.354662 GGTAGGAAAAGAAGAGGAGGAGA 58.645 47.826 0.00 0.00 0.00 3.71
3062 7209 3.131400 CGGTAGGAAAAGAAGAGGAGGAG 59.869 52.174 0.00 0.00 0.00 3.69
3063 7210 3.097614 CGGTAGGAAAAGAAGAGGAGGA 58.902 50.000 0.00 0.00 0.00 3.71
3064 7211 2.832733 ACGGTAGGAAAAGAAGAGGAGG 59.167 50.000 0.00 0.00 0.00 4.30
3065 7212 4.538746 AACGGTAGGAAAAGAAGAGGAG 57.461 45.455 0.00 0.00 0.00 3.69
3066 7213 4.834496 TGTAACGGTAGGAAAAGAAGAGGA 59.166 41.667 0.00 0.00 0.00 3.71
3067 7214 4.928020 GTGTAACGGTAGGAAAAGAAGAGG 59.072 45.833 0.00 0.00 0.00 3.69
3084 7231 2.356553 TGTGCTCCGCCGTGTAAC 60.357 61.111 0.00 0.00 0.00 2.50
3085 7232 2.356553 GTGTGCTCCGCCGTGTAA 60.357 61.111 0.00 0.00 0.00 2.41
3086 7233 4.710695 CGTGTGCTCCGCCGTGTA 62.711 66.667 0.00 0.00 0.00 2.90
3125 7272 2.901051 AAATACTCGAGCCGTGCCCG 62.901 60.000 13.61 0.00 0.00 6.13
3126 7273 1.153429 AAATACTCGAGCCGTGCCC 60.153 57.895 13.61 0.00 0.00 5.36
3127 7274 0.739813 ACAAATACTCGAGCCGTGCC 60.740 55.000 13.61 0.00 0.00 5.01
3128 7275 1.587034 GTACAAATACTCGAGCCGTGC 59.413 52.381 13.61 2.63 0.00 5.34
3129 7276 2.190981 GGTACAAATACTCGAGCCGTG 58.809 52.381 13.61 8.33 0.00 4.94
3130 7277 1.820519 TGGTACAAATACTCGAGCCGT 59.179 47.619 13.61 5.23 31.92 5.68
3131 7278 2.572191 TGGTACAAATACTCGAGCCG 57.428 50.000 13.61 0.00 31.92 5.52
3144 7291 1.070105 GGCCACAGTCGTTGGTACA 59.930 57.895 0.00 0.00 0.00 2.90
3145 7292 2.025418 CGGCCACAGTCGTTGGTAC 61.025 63.158 2.24 0.00 36.00 3.34
3146 7293 2.340809 CGGCCACAGTCGTTGGTA 59.659 61.111 2.24 0.00 36.00 3.25
3153 7300 3.044305 GCTGACACGGCCACAGTC 61.044 66.667 2.24 7.96 34.60 3.51
3154 7301 3.521529 GAGCTGACACGGCCACAGT 62.522 63.158 2.24 0.00 36.20 3.55
3155 7302 2.740055 GAGCTGACACGGCCACAG 60.740 66.667 2.24 7.69 36.20 3.66
3156 7303 4.314440 GGAGCTGACACGGCCACA 62.314 66.667 2.24 0.00 36.20 4.17
3161 7308 3.374402 AGGACGGAGCTGACACGG 61.374 66.667 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.