Multiple sequence alignment - TraesCS1D01G383300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G383300 chr1D 100.000 5763 0 0 1 5763 457941335 457947097 0.000000e+00 10643.0
1 TraesCS1D01G383300 chr1D 96.000 100 2 2 1840 1938 211632334 211632432 1.660000e-35 161.0
2 TraesCS1D01G383300 chr1D 89.474 114 10 2 2043 2156 457943260 457943371 6.020000e-30 143.0
3 TraesCS1D01G383300 chr1D 89.474 114 10 2 1926 2037 457943377 457943490 6.020000e-30 143.0
4 TraesCS1D01G383300 chr1A 93.045 1941 84 22 2676 4601 550420855 550422759 0.000000e+00 2789.0
5 TraesCS1D01G383300 chr1A 88.973 1460 86 32 395 1826 550418633 550420045 0.000000e+00 1735.0
6 TraesCS1D01G383300 chr1A 92.904 761 40 6 1923 2673 550420054 550420810 0.000000e+00 1094.0
7 TraesCS1D01G383300 chr1A 92.691 643 35 9 1 642 550416693 550417324 0.000000e+00 917.0
8 TraesCS1D01G383300 chr1A 87.637 364 29 12 635 994 550418264 550418615 5.380000e-110 409.0
9 TraesCS1D01G383300 chr1A 85.069 288 26 8 5487 5763 550424297 550424578 1.580000e-70 278.0
10 TraesCS1D01G383300 chr1A 87.678 211 24 1 4625 4833 550422809 550423019 1.600000e-60 244.0
11 TraesCS1D01G383300 chr1A 91.150 113 9 1 1926 2037 550420172 550420284 1.000000e-32 152.0
12 TraesCS1D01G383300 chr1A 85.965 114 12 3 2043 2156 550420057 550420166 1.010000e-22 119.0
13 TraesCS1D01G383300 chr1A 97.222 36 1 0 1683 1718 387664348 387664313 1.730000e-05 62.1
14 TraesCS1D01G383300 chr1A 100.000 28 0 0 5009 5036 534433745 534433772 1.000000e-02 52.8
15 TraesCS1D01G383300 chr1B 93.680 1345 53 11 3547 4882 628005615 628006936 0.000000e+00 1984.0
16 TraesCS1D01G383300 chr1B 92.123 1041 50 17 822 1844 628002835 628003861 0.000000e+00 1439.0
17 TraesCS1D01G383300 chr1B 93.772 867 42 9 2674 3533 628004659 628005520 0.000000e+00 1291.0
18 TraesCS1D01G383300 chr1B 93.131 757 38 5 1923 2670 628003862 628004613 0.000000e+00 1098.0
19 TraesCS1D01G383300 chr1B 85.942 626 56 13 5151 5762 628007355 628007962 1.750000e-179 640.0
20 TraesCS1D01G383300 chr1B 94.074 135 8 0 177 311 628002573 628002707 7.570000e-49 206.0
21 TraesCS1D01G383300 chr1B 75.676 259 46 12 5216 5469 667045919 667045673 4.720000e-21 113.0
22 TraesCS1D01G383300 chr2D 96.907 97 3 0 1831 1927 419467173 419467269 4.620000e-36 163.0
23 TraesCS1D01G383300 chr2D 95.876 97 4 0 1840 1936 22958478 22958382 2.150000e-34 158.0
24 TraesCS1D01G383300 chr2D 98.148 54 1 0 1613 1666 284240216 284240269 1.710000e-15 95.3
25 TraesCS1D01G383300 chr2D 76.374 182 35 7 4703 4882 120547506 120547681 2.210000e-14 91.6
26 TraesCS1D01G383300 chr2D 88.710 62 6 1 1608 1669 390319074 390319134 2.230000e-09 75.0
27 TraesCS1D01G383300 chr2D 97.059 34 1 0 1685 1718 284240271 284240304 2.240000e-04 58.4
28 TraesCS1D01G383300 chr2D 94.444 36 2 0 5001 5036 11294230 11294195 8.070000e-04 56.5
29 TraesCS1D01G383300 chr5D 96.875 96 3 0 1838 1933 543829398 543829303 1.660000e-35 161.0
30 TraesCS1D01G383300 chr5D 100.000 29 0 0 5009 5037 107537805 107537777 3.000000e-03 54.7
31 TraesCS1D01G383300 chr5D 100.000 28 0 0 5009 5036 443263404 443263431 1.000000e-02 52.8
32 TraesCS1D01G383300 chr5D 100.000 28 0 0 5009 5036 454108948 454108921 1.000000e-02 52.8
33 TraesCS1D01G383300 chr3A 96.842 95 3 0 1842 1936 437858451 437858545 5.980000e-35 159.0
34 TraesCS1D01G383300 chr4B 95.789 95 4 0 1832 1926 624748463 624748557 2.780000e-33 154.0
35 TraesCS1D01G383300 chr4B 96.774 31 1 0 5006 5036 416154890 416154920 1.000000e-02 52.8
36 TraesCS1D01G383300 chr4B 100.000 28 0 0 5009 5036 667855005 667854978 1.000000e-02 52.8
37 TraesCS1D01G383300 chr3B 93.396 106 4 3 1833 1936 443802367 443802471 2.780000e-33 154.0
38 TraesCS1D01G383300 chr7A 93.204 103 7 0 1825 1927 716275406 716275304 1.000000e-32 152.0
39 TraesCS1D01G383300 chr7A 97.222 36 1 0 1683 1718 317713362 317713327 1.730000e-05 62.1
40 TraesCS1D01G383300 chr6A 93.269 104 6 1 1839 1941 610209061 610209164 1.000000e-32 152.0
41 TraesCS1D01G383300 chr4A 98.246 57 1 0 1613 1669 380813567 380813511 3.670000e-17 100.0
42 TraesCS1D01G383300 chr4A 87.097 62 8 0 1608 1669 504843170 504843231 2.880000e-08 71.3
43 TraesCS1D01G383300 chr2A 98.246 57 1 0 1613 1669 377612842 377612898 3.670000e-17 100.0
44 TraesCS1D01G383300 chr2A 98.077 52 1 0 1613 1664 482551344 482551293 2.210000e-14 91.6
45 TraesCS1D01G383300 chr2A 100.000 30 0 0 1683 1712 377612895 377612924 8.070000e-04 56.5
46 TraesCS1D01G383300 chr5B 98.182 55 1 0 1613 1667 524625578 524625524 4.750000e-16 97.1
47 TraesCS1D01G383300 chr2B 85.938 64 2 3 1683 1746 462413929 462413873 1.730000e-05 62.1
48 TraesCS1D01G383300 chr6D 90.698 43 3 1 4995 5036 190909267 190909309 8.070000e-04 56.5
49 TraesCS1D01G383300 chr7D 100.000 29 0 0 855 883 128784642 128784670 3.000000e-03 54.7
50 TraesCS1D01G383300 chr7D 100.000 28 0 0 5036 5063 79210482 79210509 1.000000e-02 52.8
51 TraesCS1D01G383300 chr7B 100.000 29 0 0 855 883 89950018 89950046 3.000000e-03 54.7
52 TraesCS1D01G383300 chr4D 100.000 28 0 0 5009 5036 9440919 9440946 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G383300 chr1D 457941335 457947097 5762 False 3643.000000 10643 92.982667 1 5763 3 chr1D.!!$F2 5762
1 TraesCS1D01G383300 chr1A 550416693 550424578 7885 False 859.666667 2789 89.456889 1 5763 9 chr1A.!!$F2 5762
2 TraesCS1D01G383300 chr1B 628002573 628007962 5389 False 1109.666667 1984 92.120333 177 5762 6 chr1B.!!$F1 5585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 2203 0.182061 GGCATGCAGATGAGGAGGAA 59.818 55.0 21.36 0.0 0.00 3.36 F
1277 2860 0.178947 AAAGATTCAAACCCCGCCCA 60.179 50.0 0.00 0.0 0.00 5.36 F
1853 3454 0.333993 AGCCAAGTACTCCCTCCGTA 59.666 55.0 0.00 0.0 0.00 4.02 F
2117 3721 0.535102 AGAAAACTGGTGGCCTGTCG 60.535 55.0 3.32 0.0 34.63 4.35 F
3642 5392 0.398696 TGTACCGTTGCTGTGGGAAT 59.601 50.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 3108 0.457851 GCGCTGCCTTCTTAGAGAGA 59.542 55.000 0.00 0.0 0.00 3.10 R
3078 4739 0.752658 AGGCCAAGACCAAAAGCAAC 59.247 50.000 5.01 0.0 0.00 4.17 R
3642 5392 0.611896 GGCTAAAGCTTCCAGGCCAA 60.612 55.000 18.62 0.0 41.70 4.52 R
3934 5684 5.201243 GGCCAAGTCATAGGGAAACTAAAT 58.799 41.667 0.00 0.0 34.79 1.40 R
4857 6644 0.033920 AAGCTGTGCAGATCGTGTCA 59.966 50.000 3.02 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.373716 GCTTTCGACAACTATGCCCG 59.626 55.000 0.00 0.00 0.00 6.13
52 53 2.584064 TGCCCGTGCATCGAGAAT 59.416 55.556 9.75 0.00 44.23 2.40
58 59 1.143305 CGTGCATCGAGAATGGATCC 58.857 55.000 4.20 4.20 38.07 3.36
61 62 1.071228 TGCATCGAGAATGGATCCCTG 59.929 52.381 9.90 0.00 35.77 4.45
82 83 1.375523 CCTACACAAGGGCACGGTC 60.376 63.158 0.00 0.00 42.32 4.79
84 85 0.949105 CTACACAAGGGCACGGTCAC 60.949 60.000 0.00 0.00 0.00 3.67
105 106 1.590932 GCAGCTTCGGTCATGATGAT 58.409 50.000 0.00 0.00 0.00 2.45
106 107 1.263484 GCAGCTTCGGTCATGATGATG 59.737 52.381 0.00 4.23 33.90 3.07
107 108 2.830104 CAGCTTCGGTCATGATGATGA 58.170 47.619 0.00 0.00 36.16 2.92
108 109 3.200483 CAGCTTCGGTCATGATGATGAA 58.800 45.455 0.00 5.72 40.39 2.57
118 119 6.293790 CGGTCATGATGATGAATAAACATGCT 60.294 38.462 0.00 0.00 40.39 3.79
138 139 5.012239 TGCTACAAAGATGGAGAAGCAATT 58.988 37.500 0.00 0.00 40.23 2.32
177 178 6.143118 GTAGTACTACTACTACGATCACCGTG 59.857 46.154 23.17 0.00 46.84 4.94
352 353 7.537306 TGAACAAAAATCTGTAGAAATAAGCGC 59.463 33.333 0.00 0.00 0.00 5.92
387 388 1.673665 CAAGAGGTGGCTCACTGGC 60.674 63.158 5.48 0.00 42.18 4.85
419 420 0.318107 CTTGCGTGTTTCCTGCCTTG 60.318 55.000 0.00 0.00 0.00 3.61
430 431 0.676151 CCTGCCTTGGACTTGAGCTC 60.676 60.000 6.82 6.82 0.00 4.09
437 438 1.809209 GGACTTGAGCTCGCTCTGC 60.809 63.158 18.63 1.91 43.12 4.26
438 439 1.215117 GACTTGAGCTCGCTCTGCT 59.785 57.895 18.63 2.13 43.12 4.24
439 440 1.077645 GACTTGAGCTCGCTCTGCTG 61.078 60.000 18.63 9.16 43.12 4.41
440 441 2.433838 TTGAGCTCGCTCTGCTGC 60.434 61.111 18.63 0.00 43.12 5.25
462 463 4.378253 GCTTCTCTTGACTTTCAGCATGTC 60.378 45.833 0.00 0.00 37.40 3.06
560 561 6.145534 TGAAACAGTTACACAATCATCTCGAC 59.854 38.462 0.00 0.00 0.00 4.20
595 596 5.343249 CATGCTGCTAACTCCAAATTAACC 58.657 41.667 0.00 0.00 0.00 2.85
603 604 7.054751 GCTAACTCCAAATTAACCAGGATAGT 58.945 38.462 0.00 0.00 0.00 2.12
604 605 8.208903 GCTAACTCCAAATTAACCAGGATAGTA 58.791 37.037 0.00 0.00 0.00 1.82
648 2203 0.182061 GGCATGCAGATGAGGAGGAA 59.818 55.000 21.36 0.00 0.00 3.36
709 2264 3.309265 GGGTACAGGAGGAGAAGAGAAGA 60.309 52.174 0.00 0.00 0.00 2.87
716 2271 4.540099 AGGAGGAGAAGAGAAGAGAAGAGA 59.460 45.833 0.00 0.00 0.00 3.10
718 2273 5.358160 GGAGGAGAAGAGAAGAGAAGAGAAG 59.642 48.000 0.00 0.00 0.00 2.85
741 2296 1.166531 GGGCTTACATCATGCCGTCC 61.167 60.000 0.00 0.00 46.25 4.79
914 2479 3.845781 TCTTGGAGCAGAAGAACAACT 57.154 42.857 0.00 0.00 0.00 3.16
915 2480 3.733337 TCTTGGAGCAGAAGAACAACTC 58.267 45.455 0.00 0.00 0.00 3.01
947 2512 1.344953 AAGCCCACACCTGTCACAGA 61.345 55.000 6.30 0.00 32.44 3.41
1118 2695 2.446994 CCCACGGCCACCCCTATA 60.447 66.667 2.24 0.00 0.00 1.31
1169 2746 4.096003 CCATCCACGCGTTCCCCT 62.096 66.667 10.22 0.00 0.00 4.79
1277 2860 0.178947 AAAGATTCAAACCCCGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
1327 2910 4.686437 CCCACCCCCACCTACCCA 62.686 72.222 0.00 0.00 0.00 4.51
1404 2987 3.213402 GTCGCTCCTCCTCTCCGG 61.213 72.222 0.00 0.00 0.00 5.14
1426 3018 4.798682 TCCTCCCCCGCCTTCCTC 62.799 72.222 0.00 0.00 0.00 3.71
1529 3121 2.616842 GCTCGGTCTCTCTCTAAGAAGG 59.383 54.545 0.00 0.00 32.23 3.46
1530 3122 2.616842 CTCGGTCTCTCTCTAAGAAGGC 59.383 54.545 0.00 0.00 32.23 4.35
1531 3123 2.026169 TCGGTCTCTCTCTAAGAAGGCA 60.026 50.000 0.00 0.00 32.23 4.75
1577 3178 2.090524 CGGTTAGACGGCCGTGTTC 61.091 63.158 39.65 26.03 42.73 3.18
1719 3320 4.716977 ACCCCCGTCCAGTCTCCC 62.717 72.222 0.00 0.00 0.00 4.30
1844 3445 6.607004 AGAGTGTGTATTAAGCCAAGTACT 57.393 37.500 0.00 0.00 0.00 2.73
1845 3446 6.631962 AGAGTGTGTATTAAGCCAAGTACTC 58.368 40.000 0.00 0.00 0.00 2.59
1846 3447 5.731591 AGTGTGTATTAAGCCAAGTACTCC 58.268 41.667 0.00 0.00 0.00 3.85
1847 3448 4.874396 GTGTGTATTAAGCCAAGTACTCCC 59.126 45.833 0.00 0.00 0.00 4.30
1848 3449 4.781087 TGTGTATTAAGCCAAGTACTCCCT 59.219 41.667 0.00 0.00 0.00 4.20
1849 3450 5.105064 TGTGTATTAAGCCAAGTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
1850 3451 4.407945 TGTATTAAGCCAAGTACTCCCTCC 59.592 45.833 0.00 0.00 0.00 4.30
1851 3452 1.481871 TAAGCCAAGTACTCCCTCCG 58.518 55.000 0.00 0.00 0.00 4.63
1852 3453 0.544595 AAGCCAAGTACTCCCTCCGT 60.545 55.000 0.00 0.00 0.00 4.69
1853 3454 0.333993 AGCCAAGTACTCCCTCCGTA 59.666 55.000 0.00 0.00 0.00 4.02
1854 3455 1.188863 GCCAAGTACTCCCTCCGTAA 58.811 55.000 0.00 0.00 0.00 3.18
1855 3456 1.551883 GCCAAGTACTCCCTCCGTAAA 59.448 52.381 0.00 0.00 0.00 2.01
1856 3457 2.676176 GCCAAGTACTCCCTCCGTAAAC 60.676 54.545 0.00 0.00 0.00 2.01
1857 3458 2.830321 CCAAGTACTCCCTCCGTAAACT 59.170 50.000 0.00 0.00 0.00 2.66
1858 3459 4.019174 CCAAGTACTCCCTCCGTAAACTA 58.981 47.826 0.00 0.00 0.00 2.24
1859 3460 4.463891 CCAAGTACTCCCTCCGTAAACTAA 59.536 45.833 0.00 0.00 0.00 2.24
1860 3461 5.128335 CCAAGTACTCCCTCCGTAAACTAAT 59.872 44.000 0.00 0.00 0.00 1.73
1861 3462 6.322201 CCAAGTACTCCCTCCGTAAACTAATA 59.678 42.308 0.00 0.00 0.00 0.98
1862 3463 7.015001 CCAAGTACTCCCTCCGTAAACTAATAT 59.985 40.741 0.00 0.00 0.00 1.28
1863 3464 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
1864 3465 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1865 3466 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
1868 3469 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
1869 3470 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
1870 3471 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
1871 3472 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
1872 3473 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
1890 3491 9.918630 AAAGCGTTTAGAATACTAAAGTAGTGA 57.081 29.630 0.00 0.00 45.42 3.41
1892 3493 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
1893 3494 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2014 3615 0.667792 GTCAGAGGTTCGCTGGTCAC 60.668 60.000 0.00 0.00 32.33 3.67
2117 3721 0.535102 AGAAAACTGGTGGCCTGTCG 60.535 55.000 3.32 0.00 34.63 4.35
2177 3781 8.621532 TCTTAGCACACTCAAACTGATATTTT 57.378 30.769 0.00 0.00 0.00 1.82
2198 3803 6.530019 TTTCTTTCTTTCTGAAAAGGCTGT 57.470 33.333 4.18 0.00 43.25 4.40
2206 3811 8.635765 TCTTTCTGAAAAGGCTGTTATGTTAT 57.364 30.769 4.18 0.00 41.88 1.89
2297 3902 5.743117 CTCTTTCTGTCTCCTGAATTCCAT 58.257 41.667 2.27 0.00 0.00 3.41
2359 3972 5.863935 GTGGTAGAATTTTGACATCTTTGCC 59.136 40.000 0.00 0.00 0.00 4.52
2439 4052 2.749621 GGATTCTGTTGTGACCCATGAC 59.250 50.000 0.00 0.00 0.00 3.06
2494 4107 6.578919 CGAGCTTTCAACTTTCCAAGATAAAC 59.421 38.462 0.00 0.00 0.00 2.01
2583 4196 3.244387 TGCACTGTGAATTACTACTGCCA 60.244 43.478 12.86 0.00 0.00 4.92
2604 4217 5.750067 GCCATGCAAATATTCTAGTGGTTTG 59.250 40.000 0.00 0.00 33.98 2.93
2644 4257 4.253685 TCACTCTGCTATTGTTTGGTAGC 58.746 43.478 0.00 0.00 42.77 3.58
2662 4276 2.017049 AGCCTTATTTCTCGCGCAATT 58.983 42.857 8.75 0.00 0.00 2.32
2725 4383 6.732896 TCTCAACAAGGTAGAAAAGAGAGT 57.267 37.500 0.00 0.00 0.00 3.24
2734 4392 8.912988 CAAGGTAGAAAAGAGAGTGATCTAGAT 58.087 37.037 4.47 4.47 0.00 1.98
2835 4493 9.948964 ATCTGTATGTCTATGCAAAATGCTATA 57.051 29.630 3.78 0.36 45.31 1.31
2848 4506 5.535753 AAATGCTATAATTTGGACCTGCC 57.464 39.130 0.00 0.00 37.10 4.85
2895 4553 4.164221 AGTGGTAGTTGTATGATCTTGGGG 59.836 45.833 0.00 0.00 0.00 4.96
2896 4554 4.080526 GTGGTAGTTGTATGATCTTGGGGT 60.081 45.833 0.00 0.00 0.00 4.95
2916 4574 1.805428 GCGTTTGGTTGGATGCCACT 61.805 55.000 0.00 0.00 35.46 4.00
2920 4578 3.692101 CGTTTGGTTGGATGCCACTATAA 59.308 43.478 0.00 0.00 35.46 0.98
2938 4596 7.337718 CACTATAATGCACAGTTAAGTTAGCG 58.662 38.462 0.00 0.00 0.00 4.26
2957 4615 4.723248 AGCGAGCTTTTACTTTGTTATGC 58.277 39.130 0.00 0.00 0.00 3.14
2972 4630 9.372369 ACTTTGTTATGCTAATGTCTAGTTCTC 57.628 33.333 0.00 0.00 0.00 2.87
3002 4663 3.311322 GTCATGTTTCACCTCGTTTGACA 59.689 43.478 0.00 0.00 34.01 3.58
3025 4686 6.951198 ACATATAACCCACATTTCAAGGTCAA 59.049 34.615 0.00 0.00 0.00 3.18
3026 4687 7.619302 ACATATAACCCACATTTCAAGGTCAAT 59.381 33.333 0.00 0.00 0.00 2.57
3074 4735 1.079819 CACCCAGTCTGTGGCTACG 60.080 63.158 0.00 0.00 46.45 3.51
3078 4739 1.673033 CCCAGTCTGTGGCTACGAAAG 60.673 57.143 0.00 0.00 46.45 2.62
3136 4798 5.241403 TCCTGTTTTCCATTTAGCTGAGA 57.759 39.130 0.00 0.00 0.00 3.27
3196 4858 3.744660 AGGTAGCTGACTGGAAAACTTG 58.255 45.455 0.00 0.00 0.00 3.16
3401 5063 6.312399 TGTTGAAAATTGACGAGCTTGTAT 57.688 33.333 6.58 0.00 0.00 2.29
3642 5392 0.398696 TGTACCGTTGCTGTGGGAAT 59.601 50.000 0.00 0.00 0.00 3.01
3691 5441 4.678044 CGCTGGTTGAGATAAGAGCTGTTA 60.678 45.833 5.70 5.70 0.00 2.41
3737 5487 2.107378 TGGTGGTATTGAAGCTGTTGGA 59.893 45.455 0.00 0.00 0.00 3.53
3927 5677 7.652105 GGTACTTGCTGAATGATTTATCTCGTA 59.348 37.037 0.00 0.00 0.00 3.43
3928 5678 9.031360 GTACTTGCTGAATGATTTATCTCGTAA 57.969 33.333 0.00 0.00 0.00 3.18
3980 5730 5.008415 CCATTTGCTGAATCTCTGTACATCC 59.992 44.000 0.00 0.00 0.00 3.51
4023 5773 9.833179 ATAGATAAAATCATCCAAATGGTCCAT 57.167 29.630 0.00 0.00 36.34 3.41
4052 5802 8.761575 TCATTCAGAAGGTATTGCAATTTTTC 57.238 30.769 18.75 17.19 0.00 2.29
4077 5831 7.994911 TCTTATCATGCCTACTGTTTGATGATT 59.005 33.333 0.00 0.00 33.63 2.57
4131 5885 0.920763 TGGACATCATTCCCCTGGCT 60.921 55.000 0.00 0.00 34.33 4.75
4149 5903 1.203994 GCTAACTCGGTCACCAAGCTA 59.796 52.381 0.00 0.00 0.00 3.32
4165 5919 1.901650 GCTAACAGCACGGTGTGAGC 61.902 60.000 19.96 19.96 45.68 4.26
4361 6115 1.623811 CTGCTAGTTAGGGGTGTGTGT 59.376 52.381 0.00 0.00 0.00 3.72
4362 6116 1.346395 TGCTAGTTAGGGGTGTGTGTG 59.654 52.381 0.00 0.00 0.00 3.82
4363 6117 1.338769 GCTAGTTAGGGGTGTGTGTGG 60.339 57.143 0.00 0.00 0.00 4.17
4392 6146 4.653341 CCAGAATATCCCTCTCTTCAGTGT 59.347 45.833 0.00 0.00 0.00 3.55
4395 6149 5.362430 AGAATATCCCTCTCTTCAGTGTGTC 59.638 44.000 0.00 0.00 0.00 3.67
4491 6245 4.471904 TGAGTTTCAGATTATGAGGCGT 57.528 40.909 0.00 0.00 39.68 5.68
4575 6329 2.705127 AGTTGGGAATGTTGGTGCAAAT 59.295 40.909 0.00 0.00 0.00 2.32
4605 6360 5.007682 TCTTTTAGAATACCCACCTGTTGC 58.992 41.667 0.00 0.00 0.00 4.17
4617 6398 1.172180 CCTGTTGCGACACAATGGGT 61.172 55.000 1.50 0.00 41.27 4.51
4618 6399 0.667993 CTGTTGCGACACAATGGGTT 59.332 50.000 1.50 0.00 41.27 4.11
4623 6404 4.702612 TGTTGCGACACAATGGGTTATAAT 59.297 37.500 1.50 0.00 41.27 1.28
4628 6409 5.526111 GCGACACAATGGGTTATAATACAGT 59.474 40.000 0.00 0.00 0.00 3.55
4636 6417 6.321821 TGGGTTATAATACAGTTTCTGGCT 57.678 37.500 1.90 0.00 35.51 4.75
4643 6424 0.111253 ACAGTTTCTGGCTGGGAAGG 59.889 55.000 1.90 0.00 38.22 3.46
4672 6454 6.072397 TGCTTAGTAATATGCGTTTGTTGGTT 60.072 34.615 3.98 0.00 0.00 3.67
4674 6456 7.427318 GCTTAGTAATATGCGTTTGTTGGTTAC 59.573 37.037 0.00 0.00 0.00 2.50
4700 6482 5.131784 ACATTGGTTGGCATGAAATTGTTT 58.868 33.333 0.00 0.00 0.00 2.83
4704 6486 4.141756 TGGTTGGCATGAAATTGTTTGTCT 60.142 37.500 0.00 0.00 0.00 3.41
4834 6621 6.183360 TGTGTGCAGAAACAATCTTTTGGTAT 60.183 34.615 0.00 0.00 35.73 2.73
4838 6625 7.326063 GTGCAGAAACAATCTTTTGGTATACAC 59.674 37.037 5.01 0.00 35.73 2.90
4839 6626 7.013750 TGCAGAAACAATCTTTTGGTATACACA 59.986 33.333 5.01 0.00 35.73 3.72
4840 6627 8.028938 GCAGAAACAATCTTTTGGTATACACAT 58.971 33.333 5.01 0.00 35.73 3.21
4882 6669 2.496070 ACGATCTGCACAGCTTAGGTTA 59.504 45.455 0.00 0.00 0.00 2.85
4883 6670 2.860735 CGATCTGCACAGCTTAGGTTAC 59.139 50.000 0.00 0.00 0.00 2.50
4884 6671 2.762535 TCTGCACAGCTTAGGTTACC 57.237 50.000 0.00 0.00 0.00 2.85
4885 6672 2.257207 TCTGCACAGCTTAGGTTACCT 58.743 47.619 9.57 9.57 37.71 3.08
4886 6673 2.637872 TCTGCACAGCTTAGGTTACCTT 59.362 45.455 10.01 0.00 34.61 3.50
4887 6674 3.835978 TCTGCACAGCTTAGGTTACCTTA 59.164 43.478 10.01 0.00 34.61 2.69
4888 6675 3.933332 CTGCACAGCTTAGGTTACCTTAC 59.067 47.826 10.01 0.00 34.61 2.34
4889 6676 3.268330 GCACAGCTTAGGTTACCTTACC 58.732 50.000 10.01 0.00 38.53 2.85
4891 6678 4.565028 GCACAGCTTAGGTTACCTTACCTT 60.565 45.833 10.01 0.00 46.39 3.50
4893 6680 6.704310 CACAGCTTAGGTTACCTTACCTTTA 58.296 40.000 10.01 0.00 46.39 1.85
4895 6682 6.111382 CAGCTTAGGTTACCTTACCTTTACC 58.889 44.000 10.01 0.00 46.39 2.85
4904 6691 4.476297 ACCTTACCTTTACCTTTGGTTGG 58.524 43.478 0.00 0.00 37.09 3.77
4905 6692 4.168479 ACCTTACCTTTACCTTTGGTTGGA 59.832 41.667 0.00 0.00 37.09 3.53
4910 6697 3.301274 CTTTACCTTTGGTTGGACCCAA 58.699 45.455 0.00 0.00 42.69 4.12
4917 6704 0.187117 TGGTTGGACCCAATTCTGCA 59.813 50.000 4.63 0.00 37.50 4.41
4919 6706 1.327303 GTTGGACCCAATTCTGCACA 58.673 50.000 4.63 0.00 38.28 4.57
4920 6707 1.270550 GTTGGACCCAATTCTGCACAG 59.729 52.381 4.63 0.00 38.28 3.66
4921 6708 0.895100 TGGACCCAATTCTGCACAGC 60.895 55.000 0.00 0.00 0.00 4.40
4923 6710 0.524862 GACCCAATTCTGCACAGCTG 59.475 55.000 13.48 13.48 0.00 4.24
4926 6771 1.068055 CCCAATTCTGCACAGCTGTTC 60.068 52.381 18.94 14.04 0.00 3.18
4927 6772 1.884579 CCAATTCTGCACAGCTGTTCT 59.115 47.619 18.94 0.00 0.00 3.01
4930 6775 0.179037 TTCTGCACAGCTGTTCTGCT 60.179 50.000 18.94 0.00 46.76 4.24
4939 6784 2.744202 CAGCTGTTCTGCTATCCGTTTT 59.256 45.455 5.25 0.00 41.98 2.43
4944 6789 2.024176 TCTGCTATCCGTTTTGCCTC 57.976 50.000 0.00 0.00 0.00 4.70
4946 6791 0.248012 TGCTATCCGTTTTGCCTCGA 59.752 50.000 0.00 0.00 0.00 4.04
4947 6792 0.931005 GCTATCCGTTTTGCCTCGAG 59.069 55.000 5.13 5.13 0.00 4.04
4951 6796 1.961277 CCGTTTTGCCTCGAGCTGT 60.961 57.895 6.99 0.00 44.23 4.40
4952 6797 1.205064 CGTTTTGCCTCGAGCTGTG 59.795 57.895 6.99 0.00 44.23 3.66
4953 6798 1.081840 GTTTTGCCTCGAGCTGTGC 60.082 57.895 6.99 5.62 44.23 4.57
4955 6800 0.819259 TTTTGCCTCGAGCTGTGCTT 60.819 50.000 6.99 0.00 39.88 3.91
4956 6801 1.509644 TTTGCCTCGAGCTGTGCTTG 61.510 55.000 6.99 0.59 39.88 4.01
4957 6802 3.797546 GCCTCGAGCTGTGCTTGC 61.798 66.667 6.99 0.00 39.88 4.01
4959 6804 2.736236 CTCGAGCTGTGCTTGCGT 60.736 61.111 0.00 0.00 39.88 5.24
4960 6805 2.280119 TCGAGCTGTGCTTGCGTT 60.280 55.556 0.00 0.00 39.88 4.84
4961 6806 1.835483 CTCGAGCTGTGCTTGCGTTT 61.835 55.000 0.00 0.00 39.88 3.60
4962 6807 1.723542 CGAGCTGTGCTTGCGTTTG 60.724 57.895 0.00 0.00 39.88 2.93
4964 6809 0.931662 GAGCTGTGCTTGCGTTTGTG 60.932 55.000 0.00 0.00 39.88 3.33
4968 6813 0.098552 TGTGCTTGCGTTTGTGACTG 59.901 50.000 0.00 0.00 0.00 3.51
4970 6815 1.029408 TGCTTGCGTTTGTGACTGGT 61.029 50.000 0.00 0.00 0.00 4.00
4971 6816 0.592247 GCTTGCGTTTGTGACTGGTG 60.592 55.000 0.00 0.00 0.00 4.17
4972 6817 1.013596 CTTGCGTTTGTGACTGGTGA 58.986 50.000 0.00 0.00 0.00 4.02
4973 6818 1.603802 CTTGCGTTTGTGACTGGTGAT 59.396 47.619 0.00 0.00 0.00 3.06
4974 6819 0.943673 TGCGTTTGTGACTGGTGATG 59.056 50.000 0.00 0.00 0.00 3.07
4975 6820 1.225855 GCGTTTGTGACTGGTGATGA 58.774 50.000 0.00 0.00 0.00 2.92
4976 6821 1.806542 GCGTTTGTGACTGGTGATGAT 59.193 47.619 0.00 0.00 0.00 2.45
4977 6822 3.000041 GCGTTTGTGACTGGTGATGATA 59.000 45.455 0.00 0.00 0.00 2.15
4978 6823 3.435327 GCGTTTGTGACTGGTGATGATAA 59.565 43.478 0.00 0.00 0.00 1.75
4980 6825 4.434198 CGTTTGTGACTGGTGATGATAACG 60.434 45.833 0.00 0.00 0.00 3.18
4981 6826 2.616960 TGTGACTGGTGATGATAACGC 58.383 47.619 0.00 0.00 0.00 4.84
4982 6827 2.028567 TGTGACTGGTGATGATAACGCA 60.029 45.455 0.00 0.00 0.00 5.24
4983 6828 2.604914 GTGACTGGTGATGATAACGCAG 59.395 50.000 0.00 0.00 0.00 5.18
4985 6830 2.604914 GACTGGTGATGATAACGCAGTG 59.395 50.000 8.28 0.00 45.00 3.66
4986 6831 1.328680 CTGGTGATGATAACGCAGTGC 59.671 52.381 4.58 4.58 45.00 4.40
4988 6833 0.301687 GTGATGATAACGCAGTGCCG 59.698 55.000 10.11 7.47 45.00 5.69
4989 6834 0.108377 TGATGATAACGCAGTGCCGT 60.108 50.000 10.11 8.17 45.00 5.68
4990 6835 1.135333 TGATGATAACGCAGTGCCGTA 59.865 47.619 10.11 1.92 45.00 4.02
4991 6836 1.787155 GATGATAACGCAGTGCCGTAG 59.213 52.381 10.11 0.00 45.00 3.51
4992 6837 0.528924 TGATAACGCAGTGCCGTAGT 59.471 50.000 10.11 0.00 45.00 2.73
4993 6838 0.921347 GATAACGCAGTGCCGTAGTG 59.079 55.000 10.11 0.00 45.00 2.74
5001 6846 3.275400 CAGTGCCGTAGTGCTATCTAG 57.725 52.381 0.00 0.00 0.00 2.43
5002 6847 2.619177 CAGTGCCGTAGTGCTATCTAGT 59.381 50.000 0.00 0.00 0.00 2.57
5004 6849 3.814283 AGTGCCGTAGTGCTATCTAGTAC 59.186 47.826 0.00 0.00 38.91 2.73
5006 6851 4.993584 GTGCCGTAGTGCTATCTAGTACTA 59.006 45.833 10.10 10.10 45.44 1.82
5015 6860 6.943718 AGTGCTATCTAGTACTATTCTGTCCC 59.056 42.308 2.33 0.00 45.44 4.46
5016 6861 6.715718 GTGCTATCTAGTACTATTCTGTCCCA 59.284 42.308 2.33 0.00 36.23 4.37
5020 6865 9.303116 CTATCTAGTACTATTCTGTCCCACAAT 57.697 37.037 2.33 0.00 0.00 2.71
5022 6867 9.830186 ATCTAGTACTATTCTGTCCCACAATAT 57.170 33.333 2.33 0.00 0.00 1.28
5026 6871 9.656323 AGTACTATTCTGTCCCACAATATAAGA 57.344 33.333 0.00 0.00 0.00 2.10
5027 6872 9.694137 GTACTATTCTGTCCCACAATATAAGAC 57.306 37.037 0.00 0.00 0.00 3.01
5028 6873 7.434492 ACTATTCTGTCCCACAATATAAGACG 58.566 38.462 0.00 0.00 0.00 4.18
5032 6877 6.469410 TCTGTCCCACAATATAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
5033 6878 6.938030 TCTGTCCCACAATATAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
5034 6879 6.904498 TGTCCCACAATATAAGACGTTTTTG 58.096 36.000 0.00 0.00 0.00 2.44
5035 6880 5.798434 GTCCCACAATATAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
5036 6881 5.708230 TCCCACAATATAAGACGTTTTTGCT 59.292 36.000 0.00 0.00 0.00 3.91
5037 6882 6.207810 TCCCACAATATAAGACGTTTTTGCTT 59.792 34.615 0.00 0.00 0.00 3.91
5038 6883 7.390996 TCCCACAATATAAGACGTTTTTGCTTA 59.609 33.333 0.00 0.00 0.00 3.09
5039 6884 8.188139 CCCACAATATAAGACGTTTTTGCTTAT 58.812 33.333 10.29 10.29 38.16 1.73
5058 6903 9.775539 TTGCTTATATTATGAGATAGAGGGAGT 57.224 33.333 0.00 0.00 0.00 3.85
5069 6914 9.661954 ATGAGATAGAGGGAGTATTTAACAAGA 57.338 33.333 0.00 0.00 0.00 3.02
5070 6915 9.661954 TGAGATAGAGGGAGTATTTAACAAGAT 57.338 33.333 0.00 0.00 0.00 2.40
5073 6918 8.910351 ATAGAGGGAGTATTTAACAAGATTGC 57.090 34.615 0.00 0.00 0.00 3.56
5074 6919 6.721318 AGAGGGAGTATTTAACAAGATTGCA 58.279 36.000 0.00 0.00 0.00 4.08
5075 6920 7.175104 AGAGGGAGTATTTAACAAGATTGCAA 58.825 34.615 0.00 0.00 0.00 4.08
5076 6921 7.337942 AGAGGGAGTATTTAACAAGATTGCAAG 59.662 37.037 4.94 0.00 0.00 4.01
5077 6922 7.175104 AGGGAGTATTTAACAAGATTGCAAGA 58.825 34.615 4.94 0.00 0.00 3.02
5078 6923 7.669722 AGGGAGTATTTAACAAGATTGCAAGAA 59.330 33.333 4.94 0.00 0.00 2.52
5079 6924 8.470002 GGGAGTATTTAACAAGATTGCAAGAAT 58.530 33.333 4.94 0.00 0.00 2.40
5080 6925 9.860898 GGAGTATTTAACAAGATTGCAAGAATT 57.139 29.630 4.94 0.00 0.00 2.17
5086 6931 9.859427 TTTAACAAGATTGCAAGAATTATGGAG 57.141 29.630 4.94 0.00 0.00 3.86
5087 6932 5.899299 ACAAGATTGCAAGAATTATGGAGC 58.101 37.500 4.94 0.00 0.00 4.70
5088 6933 5.419788 ACAAGATTGCAAGAATTATGGAGCA 59.580 36.000 4.94 0.00 0.00 4.26
5089 6934 5.769484 AGATTGCAAGAATTATGGAGCAG 57.231 39.130 4.94 0.00 33.14 4.24
5090 6935 5.443283 AGATTGCAAGAATTATGGAGCAGA 58.557 37.500 4.94 0.00 33.14 4.26
5091 6936 5.531659 AGATTGCAAGAATTATGGAGCAGAG 59.468 40.000 4.94 0.00 33.14 3.35
5092 6937 3.548770 TGCAAGAATTATGGAGCAGAGG 58.451 45.455 0.00 0.00 0.00 3.69
5093 6938 2.883386 GCAAGAATTATGGAGCAGAGGG 59.117 50.000 0.00 0.00 0.00 4.30
5094 6939 3.434167 GCAAGAATTATGGAGCAGAGGGA 60.434 47.826 0.00 0.00 0.00 4.20
5095 6940 4.387598 CAAGAATTATGGAGCAGAGGGAG 58.612 47.826 0.00 0.00 0.00 4.30
5096 6941 3.663198 AGAATTATGGAGCAGAGGGAGT 58.337 45.455 0.00 0.00 0.00 3.85
5097 6942 4.820775 AGAATTATGGAGCAGAGGGAGTA 58.179 43.478 0.00 0.00 0.00 2.59
5098 6943 4.591072 AGAATTATGGAGCAGAGGGAGTAC 59.409 45.833 0.00 0.00 0.00 2.73
5099 6944 3.398318 TTATGGAGCAGAGGGAGTACA 57.602 47.619 0.00 0.00 0.00 2.90
5100 6945 2.485966 ATGGAGCAGAGGGAGTACAT 57.514 50.000 0.00 0.00 0.00 2.29
5101 6946 2.254152 TGGAGCAGAGGGAGTACATT 57.746 50.000 0.00 0.00 0.00 2.71
5102 6947 2.551270 TGGAGCAGAGGGAGTACATTT 58.449 47.619 0.00 0.00 0.00 2.32
5103 6948 2.912956 TGGAGCAGAGGGAGTACATTTT 59.087 45.455 0.00 0.00 0.00 1.82
5104 6949 3.330701 TGGAGCAGAGGGAGTACATTTTT 59.669 43.478 0.00 0.00 0.00 1.94
5105 6950 3.691609 GGAGCAGAGGGAGTACATTTTTG 59.308 47.826 0.00 0.00 0.00 2.44
5106 6951 3.084786 AGCAGAGGGAGTACATTTTTGC 58.915 45.455 0.00 0.00 0.00 3.68
5107 6952 3.084786 GCAGAGGGAGTACATTTTTGCT 58.915 45.455 0.00 0.00 0.00 3.91
5108 6953 4.019321 AGCAGAGGGAGTACATTTTTGCTA 60.019 41.667 8.41 0.00 37.58 3.49
5109 6954 4.095036 GCAGAGGGAGTACATTTTTGCTAC 59.905 45.833 0.00 0.00 0.00 3.58
5110 6955 4.330074 CAGAGGGAGTACATTTTTGCTACG 59.670 45.833 0.00 0.00 0.00 3.51
5111 6956 4.020485 AGAGGGAGTACATTTTTGCTACGT 60.020 41.667 0.00 0.00 0.00 3.57
5112 6957 4.648651 AGGGAGTACATTTTTGCTACGTT 58.351 39.130 0.00 0.00 0.00 3.99
5113 6958 5.067954 AGGGAGTACATTTTTGCTACGTTT 58.932 37.500 0.00 0.00 0.00 3.60
5114 6959 5.533528 AGGGAGTACATTTTTGCTACGTTTT 59.466 36.000 0.00 0.00 0.00 2.43
5115 6960 5.627780 GGGAGTACATTTTTGCTACGTTTTG 59.372 40.000 0.00 0.00 0.00 2.44
5116 6961 5.116528 GGAGTACATTTTTGCTACGTTTTGC 59.883 40.000 0.00 0.00 0.00 3.68
5117 6962 5.827666 AGTACATTTTTGCTACGTTTTGCT 58.172 33.333 0.00 0.00 0.00 3.91
5118 6963 6.961576 AGTACATTTTTGCTACGTTTTGCTA 58.038 32.000 0.00 0.00 0.00 3.49
5119 6964 7.075741 AGTACATTTTTGCTACGTTTTGCTAG 58.924 34.615 0.00 0.00 0.00 3.42
5120 6965 5.219633 ACATTTTTGCTACGTTTTGCTAGG 58.780 37.500 0.00 0.00 0.00 3.02
5121 6966 4.904253 TTTTTGCTACGTTTTGCTAGGT 57.096 36.364 0.00 0.00 0.00 3.08
5122 6967 6.016943 ACATTTTTGCTACGTTTTGCTAGGTA 60.017 34.615 0.00 0.00 0.00 3.08
5123 6968 6.563222 TTTTTGCTACGTTTTGCTAGGTAT 57.437 33.333 0.00 0.00 0.00 2.73
5124 6969 7.670009 TTTTTGCTACGTTTTGCTAGGTATA 57.330 32.000 0.00 0.00 0.00 1.47
5147 7185 3.138304 ACATAGCTGTGTTTGCTTCGAA 58.862 40.909 10.73 0.00 41.46 3.71
5149 7187 0.304705 AGCTGTGTTTGCTTCGAACG 59.695 50.000 0.00 0.00 37.52 3.95
5167 7205 2.001159 ACGTAGTTGTTTGCACGTTCA 58.999 42.857 0.00 0.00 44.57 3.18
5169 7207 2.283086 CGTAGTTGTTTGCACGTTCAGA 59.717 45.455 0.00 0.00 0.00 3.27
5187 7225 3.989817 TCAGAATGTTGTGTGATGACTCG 59.010 43.478 0.00 0.00 37.40 4.18
5197 7235 7.041440 TGTTGTGTGATGACTCGAATTTACATT 60.041 33.333 0.00 0.00 0.00 2.71
5227 7265 2.831333 CTGTGGCAGTGTGGATCTATC 58.169 52.381 0.00 0.00 0.00 2.08
5235 7273 4.142071 GCAGTGTGGATCTATCACTTGAGA 60.142 45.833 10.20 0.00 39.89 3.27
5272 7310 2.353109 GGAAGCAAGGAGTCCATTTTGC 60.353 50.000 21.36 21.36 44.63 3.68
5276 7314 2.353109 GCAAGGAGTCCATTTTGCTTCC 60.353 50.000 21.53 0.06 41.89 3.46
5277 7315 2.892852 CAAGGAGTCCATTTTGCTTCCA 59.107 45.455 12.86 0.00 0.00 3.53
5291 7329 2.019156 GCTTCCAGCATAAGTGGTCCC 61.019 57.143 0.00 0.00 41.89 4.46
5298 7336 3.091545 AGCATAAGTGGTCCCAATGTTG 58.908 45.455 0.00 0.00 0.00 3.33
5343 7381 0.178981 TTGGCTGCTGCTCCTTTCTT 60.179 50.000 15.64 0.00 39.59 2.52
5349 7387 0.386478 GCTGCTCCTTTCTTTGTGCG 60.386 55.000 0.00 0.00 0.00 5.34
5355 7393 2.100749 CTCCTTTCTTTGTGCGGGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
5398 7441 5.794894 TGTTAGAACTCAGGATTCCTTGAC 58.205 41.667 1.28 0.00 0.00 3.18
5410 7453 9.396022 TCAGGATTCCTTGACTGTATAATTTTC 57.604 33.333 1.28 0.00 32.92 2.29
5495 8628 5.291971 ACCAAATCAATCAGTTTTGCAGTC 58.708 37.500 0.00 0.00 36.19 3.51
5514 8647 4.009675 AGTCTTTGCACTTGTCACTGAAA 58.990 39.130 0.00 0.00 0.00 2.69
5531 8664 8.355169 GTCACTGAAATCAATAGTACGGGTATA 58.645 37.037 0.00 0.00 0.00 1.47
5533 8666 9.140286 CACTGAAATCAATAGTACGGGTATATG 57.860 37.037 0.00 0.00 0.00 1.78
5600 8733 7.394359 AGCTACCTAAAAGAAAATCATCAGCAA 59.606 33.333 0.00 0.00 0.00 3.91
5604 8741 8.203485 ACCTAAAAGAAAATCATCAGCAACAAA 58.797 29.630 0.00 0.00 0.00 2.83
5633 8770 1.402259 AGAGTATCAGCGACGACTTGG 59.598 52.381 0.00 0.00 37.82 3.61
5634 8771 1.132643 GAGTATCAGCGACGACTTGGT 59.867 52.381 0.00 0.00 33.17 3.67
5635 8772 2.353889 GAGTATCAGCGACGACTTGGTA 59.646 50.000 0.00 0.00 33.17 3.25
5636 8773 2.097142 AGTATCAGCGACGACTTGGTAC 59.903 50.000 0.00 4.49 0.00 3.34
5637 8774 0.172803 ATCAGCGACGACTTGGTACC 59.827 55.000 4.43 4.43 0.00 3.34
5639 8776 0.319211 CAGCGACGACTTGGTACCAA 60.319 55.000 25.58 25.58 0.00 3.67
5640 8777 0.390124 AGCGACGACTTGGTACCAAA 59.610 50.000 26.90 11.94 35.33 3.28
5641 8778 0.509929 GCGACGACTTGGTACCAAAC 59.490 55.000 26.90 21.11 35.33 2.93
5643 8780 2.203401 CGACGACTTGGTACCAAACAA 58.797 47.619 26.90 6.31 35.33 2.83
5681 8825 7.359262 ACCAAAAAGGAAAAAGAAAAACGAG 57.641 32.000 0.00 0.00 41.22 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.071385 AGGGATCCATTCTCGATGCAC 59.929 52.381 15.23 0.00 34.25 4.57
49 50 3.709653 TGTGTAGGTACAGGGATCCATTC 59.290 47.826 15.23 0.00 36.78 2.67
52 53 2.932184 TGTGTAGGTACAGGGATCCA 57.068 50.000 15.23 0.00 36.78 3.41
58 59 0.981183 TGCCCTTGTGTAGGTACAGG 59.019 55.000 0.00 0.00 43.07 4.00
61 62 0.390735 CCGTGCCCTTGTGTAGGTAC 60.391 60.000 0.00 0.00 43.07 3.34
86 87 1.263484 CATCATCATGACCGAAGCTGC 59.737 52.381 0.00 0.00 30.57 5.25
89 90 5.929697 TTATTCATCATCATGACCGAAGC 57.070 39.130 0.00 0.00 38.86 3.86
90 91 7.250445 TGTTTATTCATCATCATGACCGAAG 57.750 36.000 0.00 0.00 38.86 3.79
105 106 7.828717 TCTCCATCTTTGTAGCATGTTTATTCA 59.171 33.333 0.00 0.00 0.00 2.57
106 107 8.213518 TCTCCATCTTTGTAGCATGTTTATTC 57.786 34.615 0.00 0.00 0.00 1.75
107 108 8.579850 TTCTCCATCTTTGTAGCATGTTTATT 57.420 30.769 0.00 0.00 0.00 1.40
108 109 7.201767 GCTTCTCCATCTTTGTAGCATGTTTAT 60.202 37.037 0.00 0.00 0.00 1.40
118 119 5.243507 TGCAAATTGCTTCTCCATCTTTGTA 59.756 36.000 19.34 0.00 45.31 2.41
177 178 0.179230 CGTCCCGCTCGTATCGTATC 60.179 60.000 0.00 0.00 0.00 2.24
184 185 2.827190 AGCATCGTCCCGCTCGTA 60.827 61.111 0.00 0.00 31.16 3.43
352 353 0.677731 TTGCCAATCCTTCTCTGCCG 60.678 55.000 0.00 0.00 0.00 5.69
405 406 1.338020 CAAGTCCAAGGCAGGAAACAC 59.662 52.381 0.00 0.00 39.92 3.32
419 420 1.809209 GCAGAGCGAGCTCAAGTCC 60.809 63.158 24.70 6.35 44.99 3.85
430 431 0.389556 TCAAGAGAAGCAGCAGAGCG 60.390 55.000 0.00 0.00 40.15 5.03
437 438 3.136763 TGCTGAAAGTCAAGAGAAGCAG 58.863 45.455 0.00 0.00 34.46 4.24
438 439 3.198409 TGCTGAAAGTCAAGAGAAGCA 57.802 42.857 0.00 0.00 36.88 3.91
439 440 3.501445 ACATGCTGAAAGTCAAGAGAAGC 59.499 43.478 0.00 0.00 35.30 3.86
440 441 4.996122 AGACATGCTGAAAGTCAAGAGAAG 59.004 41.667 0.00 0.00 35.30 2.85
462 463 1.168714 CTTTTTCTCAAGGGCCGGAG 58.831 55.000 18.65 18.65 0.00 4.63
504 505 9.692749 GAAAATCATAATGTACCGAGTATCTCA 57.307 33.333 0.00 0.00 0.00 3.27
560 561 1.792301 CAGCATGGCTCTTGTGACG 59.208 57.895 0.00 0.00 36.40 4.35
622 623 0.394762 TCATCTGCATGCCCTTCCAC 60.395 55.000 16.68 0.00 0.00 4.02
648 2203 2.282958 TCTCTCAACTCCGGCCGT 60.283 61.111 26.12 1.61 0.00 5.68
709 2264 3.454858 TGTAAGCCCCATCTTCTCTTCT 58.545 45.455 0.00 0.00 0.00 2.85
716 2271 2.590821 GCATGATGTAAGCCCCATCTT 58.409 47.619 0.00 1.47 39.54 2.40
718 2273 1.251251 GGCATGATGTAAGCCCCATC 58.749 55.000 0.00 0.00 42.58 3.51
748 2303 3.074999 GCGACCTGGCTCAGAGGAG 62.075 68.421 0.00 0.00 44.33 3.69
749 2304 3.071206 GCGACCTGGCTCAGAGGA 61.071 66.667 0.00 0.00 34.37 3.71
750 2305 4.154347 GGCGACCTGGCTCAGAGG 62.154 72.222 0.00 0.00 40.72 3.69
805 2360 4.747529 AACGTAACTCCGCCCCGC 62.748 66.667 0.00 0.00 0.00 6.13
806 2361 1.229975 AAAAACGTAACTCCGCCCCG 61.230 55.000 0.00 0.00 0.00 5.73
910 2473 0.323629 TTGGGCCTAGGAACGAGTTG 59.676 55.000 14.75 0.00 0.00 3.16
913 2476 1.153349 GCTTGGGCCTAGGAACGAG 60.153 63.158 14.75 13.93 0.00 4.18
914 2479 2.987125 GCTTGGGCCTAGGAACGA 59.013 61.111 14.75 2.75 0.00 3.85
947 2512 0.382515 GGCTGCTATCTCGTCGAACT 59.617 55.000 0.00 0.00 0.00 3.01
1148 2725 2.180204 GGAACGCGTGGATGGATGG 61.180 63.158 14.98 0.00 0.00 3.51
1149 2726 2.180204 GGGAACGCGTGGATGGATG 61.180 63.158 14.98 0.00 0.00 3.51
1150 2727 2.189521 GGGAACGCGTGGATGGAT 59.810 61.111 14.98 0.00 0.00 3.41
1151 2728 4.090588 GGGGAACGCGTGGATGGA 62.091 66.667 14.98 0.00 0.00 3.41
1277 2860 3.356290 CGGGAGGAGGATTGAAAATTGT 58.644 45.455 0.00 0.00 0.00 2.71
1315 2898 4.726254 TCGGGTGGGTAGGTGGGG 62.726 72.222 0.00 0.00 0.00 4.96
1327 2910 4.914177 TTAATGGGTAGTTTTCTCGGGT 57.086 40.909 0.00 0.00 0.00 5.28
1510 3102 2.026169 TGCCTTCTTAGAGAGAGACCGA 60.026 50.000 0.00 0.00 35.37 4.69
1511 3103 2.357637 CTGCCTTCTTAGAGAGAGACCG 59.642 54.545 0.00 0.00 35.37 4.79
1516 3108 0.457851 GCGCTGCCTTCTTAGAGAGA 59.542 55.000 0.00 0.00 0.00 3.10
1562 3163 2.259204 CGGAACACGGCCGTCTAA 59.741 61.111 31.80 0.00 43.66 2.10
1719 3320 7.459486 CGAAATGAATCAGTAAACAAGAGAGG 58.541 38.462 0.00 0.00 0.00 3.69
1826 3427 5.354842 AGGGAGTACTTGGCTTAATACAC 57.645 43.478 0.00 0.00 0.00 2.90
1827 3428 4.407945 GGAGGGAGTACTTGGCTTAATACA 59.592 45.833 0.00 0.00 0.00 2.29
1829 3430 3.640029 CGGAGGGAGTACTTGGCTTAATA 59.360 47.826 0.00 0.00 0.00 0.98
1844 3445 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
1845 3446 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
1846 3447 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
1864 3465 9.918630 TCACTACTTTAGTATTCTAAACGCTTT 57.081 29.630 0.76 0.00 40.05 3.51
1866 3467 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
1867 3468 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
1896 3497 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
1898 3499 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2014 3615 7.176865 AGCCAAGATCATGAATTATTCCATCAG 59.823 37.037 0.00 0.36 0.00 2.90
2090 3694 2.672195 GCCACCAGTTTTCTATGCAAGC 60.672 50.000 0.00 0.00 0.00 4.01
2177 3781 7.285401 ACATAACAGCCTTTTCAGAAAGAAAGA 59.715 33.333 0.00 0.00 46.24 2.52
2188 3792 7.377766 TCACTCATAACATAACAGCCTTTTC 57.622 36.000 0.00 0.00 0.00 2.29
2206 3811 6.524734 TCTTGCTGACTAAGAAAATCACTCA 58.475 36.000 0.00 0.00 31.62 3.41
2297 3902 6.700960 CACATAAATGGTGAAGTCAAAAAGCA 59.299 34.615 0.00 0.00 38.54 3.91
2359 3972 2.086869 CACAGTCCTGTATTGCAAGGG 58.913 52.381 4.94 4.82 42.83 3.95
2439 4052 1.517694 GCATGCCATCTTTGTGCCG 60.518 57.895 6.36 0.00 0.00 5.69
2469 4082 4.756084 ATCTTGGAAAGTTGAAAGCTCG 57.244 40.909 0.00 0.00 46.34 5.03
2494 4107 5.656416 CCTTATCATAAGCCTCTCTCCCTAG 59.344 48.000 0.00 0.00 0.00 3.02
2583 4196 8.199449 CCATTCAAACCACTAGAATATTTGCAT 58.801 33.333 0.00 0.00 31.26 3.96
2604 4217 5.125097 AGAGTGATGTTTGAAGCATCCATTC 59.875 40.000 17.44 12.32 41.32 2.67
2644 4257 4.840772 CGATAAATTGCGCGAGAAATAAGG 59.159 41.667 12.10 0.00 38.81 2.69
2725 4383 5.987953 GCACAGATAGCAACAATCTAGATCA 59.012 40.000 5.51 0.00 32.40 2.92
2734 4392 2.030893 GCACAAGCACAGATAGCAACAA 60.031 45.455 0.00 0.00 41.58 2.83
2835 4493 1.620524 CCATCTGGGCAGGTCCAAATT 60.621 52.381 0.00 0.00 36.21 1.82
2848 4506 8.971073 ACTCCAATATTAAACTTTTCCATCTGG 58.029 33.333 0.00 0.00 0.00 3.86
2895 4553 1.372872 GGCATCCAACCAAACGCAC 60.373 57.895 0.00 0.00 0.00 5.34
2896 4554 1.829970 TGGCATCCAACCAAACGCA 60.830 52.632 0.00 0.00 33.12 5.24
2916 4574 6.200286 GCTCGCTAACTTAACTGTGCATTATA 59.800 38.462 0.00 0.00 0.00 0.98
2920 4578 2.673368 GCTCGCTAACTTAACTGTGCAT 59.327 45.455 0.00 0.00 0.00 3.96
2938 4596 9.278734 GACATTAGCATAACAAAGTAAAAGCTC 57.721 33.333 0.00 0.00 32.70 4.09
2957 4615 6.622549 ACAAGTTCGGAGAACTAGACATTAG 58.377 40.000 14.77 2.85 45.90 1.73
2972 4630 2.878406 AGGTGAAACATGACAAGTTCGG 59.122 45.455 0.00 0.00 39.98 4.30
3002 4663 8.608185 AATTGACCTTGAAATGTGGGTTATAT 57.392 30.769 0.00 0.00 31.60 0.86
3025 4686 6.777580 ACCTTCCTCAGTGTGACAAAATAAAT 59.222 34.615 0.00 0.00 0.00 1.40
3026 4687 6.039270 CACCTTCCTCAGTGTGACAAAATAAA 59.961 38.462 0.00 0.00 0.00 1.40
3074 4735 2.866156 GCCAAGACCAAAAGCAACTTTC 59.134 45.455 0.00 0.00 31.99 2.62
3078 4739 0.752658 AGGCCAAGACCAAAAGCAAC 59.247 50.000 5.01 0.00 0.00 4.17
3196 4858 4.032703 ACATATTTTGATTGGACGCAGC 57.967 40.909 0.00 0.00 0.00 5.25
3357 5019 6.352016 ACATAGGATGCTTGTAGATCGAAT 57.648 37.500 0.00 0.00 0.00 3.34
3360 5022 5.532557 TCAACATAGGATGCTTGTAGATCG 58.467 41.667 0.00 0.00 0.00 3.69
3401 5063 4.407621 TGTGACAAAACTAGGTCCTCTGAA 59.592 41.667 0.00 0.00 33.09 3.02
3536 5205 4.096382 AGAAAGTTCGCACACAAACAGATT 59.904 37.500 0.00 0.00 0.00 2.40
3538 5207 3.006940 AGAAAGTTCGCACACAAACAGA 58.993 40.909 0.00 0.00 0.00 3.41
3539 5208 3.405170 AGAAAGTTCGCACACAAACAG 57.595 42.857 0.00 0.00 0.00 3.16
3642 5392 0.611896 GGCTAAAGCTTCCAGGCCAA 60.612 55.000 18.62 0.00 41.70 4.52
3737 5487 7.884877 TGATGAGATTCTTACAGACAACCAAAT 59.115 33.333 0.00 0.00 0.00 2.32
3934 5684 5.201243 GGCCAAGTCATAGGGAAACTAAAT 58.799 41.667 0.00 0.00 34.79 1.40
4049 5799 7.828717 TCATCAAACAGTAGGCATGATAAGAAA 59.171 33.333 0.00 0.00 0.00 2.52
4052 5802 7.741027 ATCATCAAACAGTAGGCATGATAAG 57.259 36.000 0.00 0.00 30.81 1.73
4131 5885 2.629137 TGTTAGCTTGGTGACCGAGTTA 59.371 45.455 19.66 15.32 37.36 2.24
4149 5903 2.505982 AGCTCACACCGTGCTGTT 59.494 55.556 0.00 0.00 42.75 3.16
4361 6115 4.767908 AGAGGGATATTCTGGATAAGCCA 58.232 43.478 0.00 0.00 46.96 4.75
4362 6116 5.029474 AGAGAGGGATATTCTGGATAAGCC 58.971 45.833 0.00 0.00 37.10 4.35
4363 6117 6.212388 TGAAGAGAGGGATATTCTGGATAAGC 59.788 42.308 0.00 0.00 0.00 3.09
4392 6146 1.805943 CACGCTGTTGGATGAATGACA 59.194 47.619 0.00 0.00 0.00 3.58
4395 6149 2.995466 AACACGCTGTTGGATGAATG 57.005 45.000 3.13 0.00 39.45 2.67
4490 6244 6.534634 AGTTCTCCTATGGTAATATGGCAAC 58.465 40.000 0.00 0.00 0.00 4.17
4491 6245 6.763715 AGTTCTCCTATGGTAATATGGCAA 57.236 37.500 0.00 0.00 0.00 4.52
4575 6329 6.672657 AGGTGGGTATTCTAAAAGAAGAGCTA 59.327 38.462 11.77 4.85 41.91 3.32
4605 6360 7.548196 AACTGTATTATAACCCATTGTGTCG 57.452 36.000 0.00 0.00 0.00 4.35
4617 6398 6.569127 TCCCAGCCAGAAACTGTATTATAA 57.431 37.500 0.00 0.00 33.09 0.98
4618 6399 6.409234 CCTTCCCAGCCAGAAACTGTATTATA 60.409 42.308 0.00 0.00 33.09 0.98
4623 6404 1.351017 CCTTCCCAGCCAGAAACTGTA 59.649 52.381 0.00 0.00 33.09 2.74
4628 6409 1.084018 ATTCCCTTCCCAGCCAGAAA 58.916 50.000 0.00 0.00 0.00 2.52
4636 6417 6.542821 CATATTACTAAGCATTCCCTTCCCA 58.457 40.000 0.00 0.00 0.00 4.37
4643 6424 6.725246 ACAAACGCATATTACTAAGCATTCC 58.275 36.000 0.00 0.00 0.00 3.01
4672 6454 4.944619 TTCATGCCAACCAATGTTTGTA 57.055 36.364 0.00 0.00 30.42 2.41
4674 6456 5.008811 ACAATTTCATGCCAACCAATGTTTG 59.991 36.000 0.00 0.00 30.42 2.93
4700 6482 7.836685 AGTTTCTCATTCTACCTCATAGAGACA 59.163 37.037 0.00 0.00 41.10 3.41
4704 6486 8.595362 TTCAGTTTCTCATTCTACCTCATAGA 57.405 34.615 0.00 0.00 38.20 1.98
4838 6625 6.299604 GTGTCATTTCGACTAACACTTGATG 58.700 40.000 10.62 0.00 45.60 3.07
4839 6626 5.118664 CGTGTCATTTCGACTAACACTTGAT 59.881 40.000 14.09 0.00 45.60 2.57
4840 6627 4.443063 CGTGTCATTTCGACTAACACTTGA 59.557 41.667 14.09 0.00 45.60 3.02
4853 6640 2.475187 GCTGTGCAGATCGTGTCATTTC 60.475 50.000 3.02 0.00 0.00 2.17
4857 6644 0.033920 AAGCTGTGCAGATCGTGTCA 59.966 50.000 3.02 0.00 0.00 3.58
4882 6669 4.168479 TCCAACCAAAGGTAAAGGTAAGGT 59.832 41.667 0.00 0.00 33.12 3.50
4883 6670 4.521639 GTCCAACCAAAGGTAAAGGTAAGG 59.478 45.833 0.00 0.00 33.12 2.69
4884 6671 4.521639 GGTCCAACCAAAGGTAAAGGTAAG 59.478 45.833 0.00 0.00 38.42 2.34
4885 6672 4.472496 GGTCCAACCAAAGGTAAAGGTAA 58.528 43.478 0.00 0.00 38.42 2.85
4886 6673 3.181430 GGGTCCAACCAAAGGTAAAGGTA 60.181 47.826 0.00 0.00 41.02 3.08
4887 6674 2.425247 GGGTCCAACCAAAGGTAAAGGT 60.425 50.000 0.00 0.00 41.02 3.50
4888 6675 2.244695 GGGTCCAACCAAAGGTAAAGG 58.755 52.381 0.00 0.00 41.02 3.11
4889 6676 2.952116 TGGGTCCAACCAAAGGTAAAG 58.048 47.619 0.00 0.00 41.02 1.85
4890 6677 3.399952 TTGGGTCCAACCAAAGGTAAA 57.600 42.857 0.00 0.00 46.95 2.01
4904 6691 0.524862 CAGCTGTGCAGAATTGGGTC 59.475 55.000 5.25 0.00 0.00 4.46
4905 6692 0.178981 ACAGCTGTGCAGAATTGGGT 60.179 50.000 20.97 0.00 0.00 4.51
4910 6697 0.879765 GCAGAACAGCTGTGCAGAAT 59.120 50.000 26.87 6.92 46.62 2.40
4917 6704 0.898320 ACGGATAGCAGAACAGCTGT 59.102 50.000 15.25 15.25 46.11 4.40
4920 6707 2.729156 GCAAAACGGATAGCAGAACAGC 60.729 50.000 0.00 0.00 0.00 4.40
4921 6708 2.159517 GGCAAAACGGATAGCAGAACAG 60.160 50.000 0.00 0.00 0.00 3.16
4923 6710 2.084546 AGGCAAAACGGATAGCAGAAC 58.915 47.619 0.00 0.00 0.00 3.01
4926 6771 0.652592 CGAGGCAAAACGGATAGCAG 59.347 55.000 0.00 0.00 0.00 4.24
4927 6772 0.248012 TCGAGGCAAAACGGATAGCA 59.752 50.000 0.00 0.00 0.00 3.49
4930 6775 0.535335 AGCTCGAGGCAAAACGGATA 59.465 50.000 15.58 0.00 44.79 2.59
4939 6784 2.357881 CAAGCACAGCTCGAGGCA 60.358 61.111 15.58 0.00 44.79 4.75
4944 6789 1.723542 CAAACGCAAGCACAGCTCG 60.724 57.895 0.00 0.00 38.25 5.03
4946 6791 1.064621 CACAAACGCAAGCACAGCT 59.935 52.632 0.00 0.00 42.56 4.24
4947 6792 1.063972 TCACAAACGCAAGCACAGC 59.936 52.632 0.00 0.00 45.62 4.40
4951 6796 1.029408 ACCAGTCACAAACGCAAGCA 61.029 50.000 0.00 0.00 45.62 3.91
4952 6797 0.592247 CACCAGTCACAAACGCAAGC 60.592 55.000 0.00 0.00 45.62 4.01
4955 6800 0.943673 CATCACCAGTCACAAACGCA 59.056 50.000 0.00 0.00 0.00 5.24
4956 6801 1.225855 TCATCACCAGTCACAAACGC 58.774 50.000 0.00 0.00 0.00 4.84
4957 6802 4.434198 CGTTATCATCACCAGTCACAAACG 60.434 45.833 0.00 0.00 0.00 3.60
4959 6804 3.435327 GCGTTATCATCACCAGTCACAAA 59.565 43.478 0.00 0.00 0.00 2.83
4960 6805 3.000041 GCGTTATCATCACCAGTCACAA 59.000 45.455 0.00 0.00 0.00 3.33
4961 6806 2.028567 TGCGTTATCATCACCAGTCACA 60.029 45.455 0.00 0.00 0.00 3.58
4962 6807 2.604914 CTGCGTTATCATCACCAGTCAC 59.395 50.000 0.00 0.00 0.00 3.67
4964 6809 2.604914 CACTGCGTTATCATCACCAGTC 59.395 50.000 0.00 0.00 31.75 3.51
4968 6813 0.657840 GGCACTGCGTTATCATCACC 59.342 55.000 0.00 0.00 0.00 4.02
4970 6815 0.108377 ACGGCACTGCGTTATCATCA 60.108 50.000 0.00 0.00 0.00 3.07
4971 6816 1.787155 CTACGGCACTGCGTTATCATC 59.213 52.381 4.27 0.00 0.00 2.92
4972 6817 1.136305 ACTACGGCACTGCGTTATCAT 59.864 47.619 4.27 0.00 0.00 2.45
4973 6818 0.528924 ACTACGGCACTGCGTTATCA 59.471 50.000 4.27 0.00 0.00 2.15
4974 6819 0.921347 CACTACGGCACTGCGTTATC 59.079 55.000 4.27 0.00 0.00 1.75
4975 6820 1.082117 GCACTACGGCACTGCGTTAT 61.082 55.000 4.27 0.00 0.00 1.89
4976 6821 1.735198 GCACTACGGCACTGCGTTA 60.735 57.895 4.27 0.00 0.00 3.18
4977 6822 2.149803 TAGCACTACGGCACTGCGTT 62.150 55.000 4.27 0.00 35.98 4.84
4978 6823 1.945354 ATAGCACTACGGCACTGCGT 61.945 55.000 0.00 0.00 35.98 5.24
4980 6825 0.103208 AGATAGCACTACGGCACTGC 59.897 55.000 0.00 0.00 35.83 4.40
4981 6826 2.619177 ACTAGATAGCACTACGGCACTG 59.381 50.000 0.00 0.00 35.83 3.66
4982 6827 2.933573 ACTAGATAGCACTACGGCACT 58.066 47.619 0.00 0.00 35.83 4.40
4983 6828 3.814283 AGTACTAGATAGCACTACGGCAC 59.186 47.826 0.00 0.00 35.83 5.01
4984 6829 4.082665 AGTACTAGATAGCACTACGGCA 57.917 45.455 0.00 0.00 35.83 5.69
4985 6830 6.594937 AGAATAGTACTAGATAGCACTACGGC 59.405 42.308 8.85 0.00 35.59 5.68
4986 6831 7.603404 ACAGAATAGTACTAGATAGCACTACGG 59.397 40.741 8.85 0.00 35.59 4.02
4988 6833 8.938906 GGACAGAATAGTACTAGATAGCACTAC 58.061 40.741 8.85 0.00 35.59 2.73
4989 6834 8.102047 GGGACAGAATAGTACTAGATAGCACTA 58.898 40.741 8.85 3.09 36.79 2.74
4990 6835 6.943718 GGGACAGAATAGTACTAGATAGCACT 59.056 42.308 8.85 0.00 34.46 4.40
4991 6836 6.715718 TGGGACAGAATAGTACTAGATAGCAC 59.284 42.308 8.85 0.00 0.00 4.40
4992 6837 6.715718 GTGGGACAGAATAGTACTAGATAGCA 59.284 42.308 8.85 0.00 41.80 3.49
4993 6838 6.715718 TGTGGGACAGAATAGTACTAGATAGC 59.284 42.308 8.85 0.00 41.80 2.97
4994 6839 8.693120 TTGTGGGACAGAATAGTACTAGATAG 57.307 38.462 8.85 1.71 41.80 2.08
5008 6853 5.670792 AACGTCTTATATTGTGGGACAGA 57.329 39.130 0.00 0.00 41.80 3.41
5009 6854 6.737254 AAAACGTCTTATATTGTGGGACAG 57.263 37.500 0.00 0.00 41.80 3.51
5010 6855 6.568844 GCAAAAACGTCTTATATTGTGGGACA 60.569 38.462 0.00 0.00 0.00 4.02
5011 6856 5.798434 GCAAAAACGTCTTATATTGTGGGAC 59.202 40.000 0.00 0.00 0.00 4.46
5012 6857 5.708230 AGCAAAAACGTCTTATATTGTGGGA 59.292 36.000 0.00 0.00 0.00 4.37
5013 6858 5.949735 AGCAAAAACGTCTTATATTGTGGG 58.050 37.500 0.00 0.00 0.00 4.61
5032 6877 9.775539 ACTCCCTCTATCTCATAATATAAGCAA 57.224 33.333 0.00 0.00 0.00 3.91
5043 6888 9.661954 TCTTGTTAAATACTCCCTCTATCTCAT 57.338 33.333 0.00 0.00 0.00 2.90
5044 6889 9.661954 ATCTTGTTAAATACTCCCTCTATCTCA 57.338 33.333 0.00 0.00 0.00 3.27
5047 6892 8.994170 GCAATCTTGTTAAATACTCCCTCTATC 58.006 37.037 0.00 0.00 0.00 2.08
5048 6893 8.494433 TGCAATCTTGTTAAATACTCCCTCTAT 58.506 33.333 0.00 0.00 0.00 1.98
5049 6894 7.857456 TGCAATCTTGTTAAATACTCCCTCTA 58.143 34.615 0.00 0.00 0.00 2.43
5050 6895 6.721318 TGCAATCTTGTTAAATACTCCCTCT 58.279 36.000 0.00 0.00 0.00 3.69
5051 6896 7.336931 TCTTGCAATCTTGTTAAATACTCCCTC 59.663 37.037 0.00 0.00 0.00 4.30
5052 6897 7.175104 TCTTGCAATCTTGTTAAATACTCCCT 58.825 34.615 0.00 0.00 0.00 4.20
5053 6898 7.391148 TCTTGCAATCTTGTTAAATACTCCC 57.609 36.000 0.00 0.00 0.00 4.30
5054 6899 9.860898 AATTCTTGCAATCTTGTTAAATACTCC 57.139 29.630 0.00 0.00 0.00 3.85
5060 6905 9.859427 CTCCATAATTCTTGCAATCTTGTTAAA 57.141 29.630 0.00 0.00 0.00 1.52
5061 6906 7.975616 GCTCCATAATTCTTGCAATCTTGTTAA 59.024 33.333 0.00 0.00 0.00 2.01
5062 6907 7.122501 TGCTCCATAATTCTTGCAATCTTGTTA 59.877 33.333 0.00 0.00 0.00 2.41
5063 6908 6.071221 TGCTCCATAATTCTTGCAATCTTGTT 60.071 34.615 0.00 0.00 0.00 2.83
5064 6909 5.419788 TGCTCCATAATTCTTGCAATCTTGT 59.580 36.000 0.00 0.00 0.00 3.16
5065 6910 5.898174 TGCTCCATAATTCTTGCAATCTTG 58.102 37.500 0.00 0.00 0.00 3.02
5066 6911 5.889853 TCTGCTCCATAATTCTTGCAATCTT 59.110 36.000 0.00 0.00 0.00 2.40
5067 6912 5.443283 TCTGCTCCATAATTCTTGCAATCT 58.557 37.500 0.00 0.00 0.00 2.40
5068 6913 5.278364 CCTCTGCTCCATAATTCTTGCAATC 60.278 44.000 0.00 0.00 0.00 2.67
5069 6914 4.583489 CCTCTGCTCCATAATTCTTGCAAT 59.417 41.667 0.00 0.00 0.00 3.56
5070 6915 3.949754 CCTCTGCTCCATAATTCTTGCAA 59.050 43.478 0.00 0.00 0.00 4.08
5071 6916 3.548770 CCTCTGCTCCATAATTCTTGCA 58.451 45.455 0.00 0.00 0.00 4.08
5072 6917 2.883386 CCCTCTGCTCCATAATTCTTGC 59.117 50.000 0.00 0.00 0.00 4.01
5073 6918 4.141528 ACTCCCTCTGCTCCATAATTCTTG 60.142 45.833 0.00 0.00 0.00 3.02
5074 6919 4.043596 ACTCCCTCTGCTCCATAATTCTT 58.956 43.478 0.00 0.00 0.00 2.52
5075 6920 3.663198 ACTCCCTCTGCTCCATAATTCT 58.337 45.455 0.00 0.00 0.00 2.40
5076 6921 4.345257 TGTACTCCCTCTGCTCCATAATTC 59.655 45.833 0.00 0.00 0.00 2.17
5077 6922 4.298626 TGTACTCCCTCTGCTCCATAATT 58.701 43.478 0.00 0.00 0.00 1.40
5078 6923 3.928754 TGTACTCCCTCTGCTCCATAAT 58.071 45.455 0.00 0.00 0.00 1.28
5079 6924 3.398318 TGTACTCCCTCTGCTCCATAA 57.602 47.619 0.00 0.00 0.00 1.90
5080 6925 3.619900 ATGTACTCCCTCTGCTCCATA 57.380 47.619 0.00 0.00 0.00 2.74
5081 6926 2.485966 ATGTACTCCCTCTGCTCCAT 57.514 50.000 0.00 0.00 0.00 3.41
5082 6927 2.254152 AATGTACTCCCTCTGCTCCA 57.746 50.000 0.00 0.00 0.00 3.86
5083 6928 3.636153 AAAATGTACTCCCTCTGCTCC 57.364 47.619 0.00 0.00 0.00 4.70
5084 6929 3.127721 GCAAAAATGTACTCCCTCTGCTC 59.872 47.826 0.00 0.00 0.00 4.26
5085 6930 3.084786 GCAAAAATGTACTCCCTCTGCT 58.915 45.455 0.00 0.00 0.00 4.24
5086 6931 3.084786 AGCAAAAATGTACTCCCTCTGC 58.915 45.455 0.00 0.00 0.00 4.26
5087 6932 4.330074 CGTAGCAAAAATGTACTCCCTCTG 59.670 45.833 0.00 0.00 0.00 3.35
5088 6933 4.020485 ACGTAGCAAAAATGTACTCCCTCT 60.020 41.667 0.00 0.00 0.00 3.69
5089 6934 4.251268 ACGTAGCAAAAATGTACTCCCTC 58.749 43.478 0.00 0.00 0.00 4.30
5090 6935 4.281898 ACGTAGCAAAAATGTACTCCCT 57.718 40.909 0.00 0.00 0.00 4.20
5091 6936 5.366829 AAACGTAGCAAAAATGTACTCCC 57.633 39.130 0.00 0.00 0.00 4.30
5092 6937 5.116528 GCAAAACGTAGCAAAAATGTACTCC 59.883 40.000 0.00 0.00 0.00 3.85
5093 6938 5.912955 AGCAAAACGTAGCAAAAATGTACTC 59.087 36.000 9.73 0.00 0.00 2.59
5094 6939 5.827666 AGCAAAACGTAGCAAAAATGTACT 58.172 33.333 9.73 0.00 0.00 2.73
5095 6940 6.304683 CCTAGCAAAACGTAGCAAAAATGTAC 59.695 38.462 9.73 0.00 0.00 2.90
5096 6941 6.016943 ACCTAGCAAAACGTAGCAAAAATGTA 60.017 34.615 9.73 0.00 0.00 2.29
5097 6942 5.219633 CCTAGCAAAACGTAGCAAAAATGT 58.780 37.500 9.73 0.00 0.00 2.71
5098 6943 5.219633 ACCTAGCAAAACGTAGCAAAAATG 58.780 37.500 9.73 0.00 0.00 2.32
5099 6944 5.447624 ACCTAGCAAAACGTAGCAAAAAT 57.552 34.783 9.73 0.00 0.00 1.82
5100 6945 4.904253 ACCTAGCAAAACGTAGCAAAAA 57.096 36.364 9.73 0.00 0.00 1.94
5101 6946 7.063780 GTCTATACCTAGCAAAACGTAGCAAAA 59.936 37.037 9.73 0.00 0.00 2.44
5102 6947 6.532657 GTCTATACCTAGCAAAACGTAGCAAA 59.467 38.462 9.73 0.00 0.00 3.68
5103 6948 6.038356 GTCTATACCTAGCAAAACGTAGCAA 58.962 40.000 9.73 0.00 0.00 3.91
5104 6949 5.125900 TGTCTATACCTAGCAAAACGTAGCA 59.874 40.000 9.73 0.00 0.00 3.49
5105 6950 5.585390 TGTCTATACCTAGCAAAACGTAGC 58.415 41.667 0.00 0.00 0.00 3.58
5106 6951 7.537991 GCTATGTCTATACCTAGCAAAACGTAG 59.462 40.741 9.65 0.00 44.62 3.51
5107 6952 7.230108 AGCTATGTCTATACCTAGCAAAACGTA 59.770 37.037 14.85 0.00 46.46 3.57
5108 6953 6.040616 AGCTATGTCTATACCTAGCAAAACGT 59.959 38.462 14.85 0.00 46.46 3.99
5109 6954 6.363626 CAGCTATGTCTATACCTAGCAAAACG 59.636 42.308 14.85 0.00 46.46 3.60
5110 6955 7.169982 CACAGCTATGTCTATACCTAGCAAAAC 59.830 40.741 14.85 0.00 46.46 2.43
5111 6956 7.147724 ACACAGCTATGTCTATACCTAGCAAAA 60.148 37.037 14.85 0.00 46.46 2.44
5112 6957 6.323996 ACACAGCTATGTCTATACCTAGCAAA 59.676 38.462 14.85 0.00 46.46 3.68
5113 6958 5.833667 ACACAGCTATGTCTATACCTAGCAA 59.166 40.000 14.85 0.00 46.46 3.91
5114 6959 5.386060 ACACAGCTATGTCTATACCTAGCA 58.614 41.667 14.85 0.00 46.46 3.49
5115 6960 5.968528 ACACAGCTATGTCTATACCTAGC 57.031 43.478 0.00 7.26 45.21 3.42
5116 6961 6.642950 GCAAACACAGCTATGTCTATACCTAG 59.357 42.308 0.00 0.00 37.65 3.02
5117 6962 6.323996 AGCAAACACAGCTATGTCTATACCTA 59.676 38.462 0.00 0.00 41.32 3.08
5118 6963 5.129485 AGCAAACACAGCTATGTCTATACCT 59.871 40.000 0.00 0.00 41.32 3.08
5119 6964 5.360591 AGCAAACACAGCTATGTCTATACC 58.639 41.667 0.00 0.00 41.32 2.73
5120 6965 6.291849 CGAAGCAAACACAGCTATGTCTATAC 60.292 42.308 0.00 0.00 42.53 1.47
5121 6966 5.748630 CGAAGCAAACACAGCTATGTCTATA 59.251 40.000 0.00 0.00 42.53 1.31
5122 6967 4.568359 CGAAGCAAACACAGCTATGTCTAT 59.432 41.667 0.00 0.00 42.53 1.98
5123 6968 3.926527 CGAAGCAAACACAGCTATGTCTA 59.073 43.478 0.00 0.00 42.53 2.59
5124 6969 2.738846 CGAAGCAAACACAGCTATGTCT 59.261 45.455 0.00 0.00 42.53 3.41
5132 6977 2.538449 ACTACGTTCGAAGCAAACACAG 59.462 45.455 0.00 0.00 0.00 3.66
5149 7187 3.936902 TCTGAACGTGCAAACAACTAC 57.063 42.857 0.00 0.00 0.00 2.73
5163 7201 5.613360 CGAGTCATCACACAACATTCTGAAC 60.613 44.000 0.00 0.00 0.00 3.18
5164 7202 4.448732 CGAGTCATCACACAACATTCTGAA 59.551 41.667 0.00 0.00 0.00 3.02
5167 7205 4.257267 TCGAGTCATCACACAACATTCT 57.743 40.909 0.00 0.00 0.00 2.40
5169 7207 5.947228 AATTCGAGTCATCACACAACATT 57.053 34.783 0.00 0.00 0.00 2.71
5187 7225 7.062255 GCCACAGCAGAAAGTTAATGTAAATTC 59.938 37.037 0.00 0.00 39.53 2.17
5206 7244 0.250234 TAGATCCACACTGCCACAGC 59.750 55.000 0.00 0.00 34.37 4.40
5214 7252 5.514169 TCTCTCAAGTGATAGATCCACACT 58.486 41.667 10.04 10.04 45.02 3.55
5227 7265 0.037882 TGAAGCCGCTCTCTCAAGTG 60.038 55.000 0.00 0.00 0.00 3.16
5235 7273 0.615331 TTCCAAGATGAAGCCGCTCT 59.385 50.000 0.00 0.00 0.00 4.09
5272 7310 1.281867 TGGGACCACTTATGCTGGAAG 59.718 52.381 0.00 0.00 32.55 3.46
5276 7314 2.726821 ACATTGGGACCACTTATGCTG 58.273 47.619 0.00 0.00 0.00 4.41
5277 7315 3.091545 CAACATTGGGACCACTTATGCT 58.908 45.455 0.00 0.00 0.00 3.79
5291 7329 7.020010 GCTTTGATCAGAGTAGTTCAACATTG 58.980 38.462 14.24 0.00 29.59 2.82
5298 7336 3.055094 TGGGGCTTTGATCAGAGTAGTTC 60.055 47.826 14.24 0.00 0.00 3.01
5355 7393 9.058174 TCTAACAGAAAAACAATATCGGACAAA 57.942 29.630 0.00 0.00 0.00 2.83
5363 7401 9.793259 TCCTGAGTTCTAACAGAAAAACAATAT 57.207 29.630 0.00 0.00 35.75 1.28
5374 7412 5.872070 GTCAAGGAATCCTGAGTTCTAACAG 59.128 44.000 0.90 0.00 32.13 3.16
5410 7453 5.273170 TCAGCTCGAAACAAATTGACAAAG 58.727 37.500 0.00 0.00 0.00 2.77
5495 8628 4.923893 TGATTTCAGTGACAAGTGCAAAG 58.076 39.130 0.00 0.00 0.00 2.77
5533 8666 9.507280 CACATCATTTTTCCAATGTGTAGATAC 57.493 33.333 6.24 0.00 42.45 2.24
5561 8694 2.412591 AGGTAGCTGATACATTGGGCT 58.587 47.619 5.36 0.00 35.96 5.19
5611 8748 3.064958 CCAAGTCGTCGCTGATACTCTTA 59.935 47.826 0.00 0.00 0.00 2.10
5624 8761 3.200483 ACTTGTTTGGTACCAAGTCGTC 58.800 45.455 25.74 15.34 37.24 4.20
5654 8798 8.622157 TCGTTTTTCTTTTTCCTTTTTGGTTTT 58.378 25.926 0.00 0.00 37.07 2.43
5665 8809 4.675565 GCTAGCACTCGTTTTTCTTTTTCC 59.324 41.667 10.63 0.00 0.00 3.13
5706 8855 2.888447 GCCCACTCACAGCCAGACT 61.888 63.158 0.00 0.00 0.00 3.24
5710 8859 2.431683 GAAGCCCACTCACAGCCA 59.568 61.111 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.