Multiple sequence alignment - TraesCS1D01G383000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G383000 chr1D 100.000 2393 0 0 1 2393 457874771 457877163 0.000000e+00 4420
1 TraesCS1D01G383000 chr1D 90.361 166 13 3 530 692 331539887 331539722 5.180000e-52 215
2 TraesCS1D01G383000 chr1B 96.203 1659 54 4 1 1651 627942546 627944203 0.000000e+00 2706
3 TraesCS1D01G383000 chr1B 81.421 183 14 10 1891 2056 627944240 627944419 5.370000e-27 132
4 TraesCS1D01G383000 chr1A 92.975 1395 59 21 688 2060 550338216 550339593 0.000000e+00 1997
5 TraesCS1D01G383000 chr1A 96.987 531 15 1 1 531 550337688 550338217 0.000000e+00 891
6 TraesCS1D01G383000 chr5B 80.603 696 89 28 690 1368 407128455 407127789 1.650000e-136 496
7 TraesCS1D01G383000 chr5A 83.394 548 66 9 1418 1960 447369645 447369118 3.580000e-133 484
8 TraesCS1D01G383000 chr5D 83.736 455 51 14 916 1368 344691821 344692254 2.210000e-110 409
9 TraesCS1D01G383000 chr7A 91.463 164 12 1 530 691 134438763 134438926 8.610000e-55 224
10 TraesCS1D01G383000 chr7A 89.941 169 14 2 527 692 156113551 156113383 5.180000e-52 215
11 TraesCS1D01G383000 chr3A 91.358 162 12 1 530 689 585298142 585297981 1.110000e-53 220
12 TraesCS1D01G383000 chr6A 90.419 167 14 1 527 691 101317400 101317234 4.010000e-53 219
13 TraesCS1D01G383000 chr3D 90.798 163 13 1 530 690 187836308 187836470 1.440000e-52 217
14 TraesCS1D01G383000 chr2A 89.941 169 14 2 526 692 135473392 135473225 5.180000e-52 215
15 TraesCS1D01G383000 chr2D 88.136 177 17 2 529 703 541069769 541069595 8.670000e-50 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G383000 chr1D 457874771 457877163 2392 False 4420 4420 100.000 1 2393 1 chr1D.!!$F1 2392
1 TraesCS1D01G383000 chr1B 627942546 627944419 1873 False 1419 2706 88.812 1 2056 2 chr1B.!!$F1 2055
2 TraesCS1D01G383000 chr1A 550337688 550339593 1905 False 1444 1997 94.981 1 2060 2 chr1A.!!$F1 2059
3 TraesCS1D01G383000 chr5B 407127789 407128455 666 True 496 496 80.603 690 1368 1 chr5B.!!$R1 678
4 TraesCS1D01G383000 chr5A 447369118 447369645 527 True 484 484 83.394 1418 1960 1 chr5A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 414 2.231964 TGGCCAATGAAGAATTGCTGAC 59.768 45.455 0.61 0.0 43.8 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2138 0.461961 GCGGTAGAGGCAGATGAACT 59.538 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 4.526970 CCAAACATATCTAGCAACAGGGT 58.473 43.478 0.00 0.00 0.00 4.34
155 156 4.695928 GGGTACAAGAAGAACAAGTGATCC 59.304 45.833 0.00 0.00 0.00 3.36
325 326 6.942005 TCATATTTACATCATGGCCGATCTTT 59.058 34.615 0.00 0.00 0.00 2.52
413 414 2.231964 TGGCCAATGAAGAATTGCTGAC 59.768 45.455 0.61 0.00 43.80 3.51
530 531 2.326664 TCGTTTGCGCGATGTTAACTA 58.673 42.857 12.10 0.00 35.83 2.24
593 594 3.735237 ATGGACTACATACGGAGCAAG 57.265 47.619 0.00 0.00 38.26 4.01
708 713 9.971922 GGGAGTATTATCCAGAAAATTTGATTG 57.028 33.333 0.00 0.00 41.52 2.67
990 1008 5.014202 TGTAAATTCCTTTCTTGGTAGGCC 58.986 41.667 0.00 0.00 0.00 5.19
1036 1054 2.126228 CCGAAACGACCAGCGCTA 60.126 61.111 10.99 0.00 46.04 4.26
1050 1068 4.162690 GCTACCAGCCCACCTCCG 62.163 72.222 0.00 0.00 34.48 4.63
1377 1395 1.825281 CGCCTCCTCCTGGATCATCC 61.825 65.000 0.00 0.00 42.29 3.51
1524 1543 3.700538 TGGAACCTTGGATGGAAAGATG 58.299 45.455 0.00 0.00 0.00 2.90
1740 1766 4.473196 TGTTCAAGAATGGGTATAGCCTCA 59.527 41.667 21.19 2.93 37.43 3.86
1750 1776 0.469917 TATAGCCTCAGGTTGCCAGC 59.530 55.000 0.00 0.00 0.00 4.85
1769 1795 3.553105 CAGCTTTGGTTTGCTTTTCTGTC 59.447 43.478 0.00 0.00 37.44 3.51
1772 1798 4.363138 CTTTGGTTTGCTTTTCTGTCTCC 58.637 43.478 0.00 0.00 0.00 3.71
1782 1808 4.503296 GCTTTTCTGTCTCCTGGTGTTCTA 60.503 45.833 0.00 0.00 0.00 2.10
1783 1809 5.799213 CTTTTCTGTCTCCTGGTGTTCTAT 58.201 41.667 0.00 0.00 0.00 1.98
1784 1810 5.825593 TTTCTGTCTCCTGGTGTTCTATT 57.174 39.130 0.00 0.00 0.00 1.73
1785 1811 5.825593 TTCTGTCTCCTGGTGTTCTATTT 57.174 39.130 0.00 0.00 0.00 1.40
1786 1812 5.825593 TCTGTCTCCTGGTGTTCTATTTT 57.174 39.130 0.00 0.00 0.00 1.82
1814 1844 5.705441 TCGAGATTTATCTGCCAGTGTTTTT 59.295 36.000 0.00 0.00 37.25 1.94
1816 1846 7.552687 TCGAGATTTATCTGCCAGTGTTTTTAT 59.447 33.333 0.00 0.00 37.25 1.40
1825 1855 3.367703 GCCAGTGTTTTTATGCTGCAGAT 60.368 43.478 20.43 10.74 0.00 2.90
1827 1857 5.622007 GCCAGTGTTTTTATGCTGCAGATAA 60.622 40.000 20.43 15.01 0.00 1.75
1839 1869 5.363101 TGCTGCAGATAACTGGATTAGAAG 58.637 41.667 20.43 0.00 43.07 2.85
1872 1908 4.565360 GCCATGCTGCCATCACTA 57.435 55.556 0.00 0.00 0.00 2.74
1886 1922 4.771114 CATCACTACCCTGGATGGTAAA 57.229 45.455 0.00 0.00 40.30 2.01
1924 1964 5.107133 GCAATGCTGCTTTTGTTATCTGAT 58.893 37.500 14.31 0.00 45.74 2.90
1925 1965 5.005394 GCAATGCTGCTTTTGTTATCTGATG 59.995 40.000 14.31 0.00 45.74 3.07
1926 1966 6.327154 CAATGCTGCTTTTGTTATCTGATGA 58.673 36.000 0.00 0.00 0.00 2.92
1927 1967 5.963176 TGCTGCTTTTGTTATCTGATGAA 57.037 34.783 0.00 0.00 0.00 2.57
1928 1968 6.330004 TGCTGCTTTTGTTATCTGATGAAA 57.670 33.333 0.00 0.00 0.00 2.69
1931 1971 6.642131 GCTGCTTTTGTTATCTGATGAAAACA 59.358 34.615 0.00 0.44 0.00 2.83
1981 2021 2.095364 CAGTCTTGCAAACTCCATCTGC 60.095 50.000 0.00 0.00 36.60 4.26
2002 2042 4.376146 GCCCTTTGCACTGTCAATAAAAA 58.624 39.130 0.00 0.00 40.77 1.94
2004 2044 5.469760 GCCCTTTGCACTGTCAATAAAAATT 59.530 36.000 0.00 0.00 40.77 1.82
2012 2052 9.672086 TGCACTGTCAATAAAAATTTACTGTAC 57.328 29.630 0.00 0.00 0.00 2.90
2013 2053 9.893305 GCACTGTCAATAAAAATTTACTGTACT 57.107 29.630 0.00 0.00 0.00 2.73
2063 2119 8.430801 AGATTATCTCGAAGAAAATTGTCCTG 57.569 34.615 0.00 0.00 34.09 3.86
2064 2120 4.954092 ATCTCGAAGAAAATTGTCCTGC 57.046 40.909 0.00 0.00 34.09 4.85
2065 2121 2.736721 TCTCGAAGAAAATTGTCCTGCG 59.263 45.455 0.00 0.00 34.09 5.18
2066 2122 2.736721 CTCGAAGAAAATTGTCCTGCGA 59.263 45.455 0.00 0.00 34.09 5.10
2067 2123 2.478894 TCGAAGAAAATTGTCCTGCGAC 59.521 45.455 0.00 0.00 39.66 5.19
2068 2124 2.480419 CGAAGAAAATTGTCCTGCGACT 59.520 45.455 0.00 0.00 39.94 4.18
2069 2125 3.678072 CGAAGAAAATTGTCCTGCGACTA 59.322 43.478 0.00 0.00 39.94 2.59
2070 2126 4.434330 CGAAGAAAATTGTCCTGCGACTAC 60.434 45.833 0.00 0.00 39.94 2.73
2071 2127 3.335579 AGAAAATTGTCCTGCGACTACC 58.664 45.455 0.00 0.00 39.94 3.18
2072 2128 3.008049 AGAAAATTGTCCTGCGACTACCT 59.992 43.478 0.00 0.00 39.94 3.08
2073 2129 3.418684 AAATTGTCCTGCGACTACCTT 57.581 42.857 0.00 0.00 39.94 3.50
2074 2130 3.418684 AATTGTCCTGCGACTACCTTT 57.581 42.857 0.00 0.00 39.94 3.11
2075 2131 2.163818 TTGTCCTGCGACTACCTTTG 57.836 50.000 0.00 0.00 39.94 2.77
2076 2132 0.320374 TGTCCTGCGACTACCTTTGG 59.680 55.000 0.00 0.00 39.94 3.28
2077 2133 0.320697 GTCCTGCGACTACCTTTGGT 59.679 55.000 0.00 0.00 40.16 3.67
2078 2134 0.606604 TCCTGCGACTACCTTTGGTC 59.393 55.000 0.00 0.00 37.09 4.02
2079 2135 0.608640 CCTGCGACTACCTTTGGTCT 59.391 55.000 0.00 0.00 37.09 3.85
2080 2136 1.822990 CCTGCGACTACCTTTGGTCTA 59.177 52.381 0.00 0.00 37.09 2.59
2081 2137 2.159226 CCTGCGACTACCTTTGGTCTAG 60.159 54.545 0.00 0.00 37.09 2.43
2082 2138 2.753452 CTGCGACTACCTTTGGTCTAGA 59.247 50.000 0.00 0.00 37.09 2.43
2083 2139 2.753452 TGCGACTACCTTTGGTCTAGAG 59.247 50.000 0.00 0.00 37.09 2.43
2084 2140 2.754002 GCGACTACCTTTGGTCTAGAGT 59.246 50.000 0.00 0.00 37.09 3.24
2085 2141 3.193056 GCGACTACCTTTGGTCTAGAGTT 59.807 47.826 0.00 0.00 37.09 3.01
2086 2142 4.674885 GCGACTACCTTTGGTCTAGAGTTC 60.675 50.000 0.00 0.00 37.09 3.01
2087 2143 4.458295 CGACTACCTTTGGTCTAGAGTTCA 59.542 45.833 0.00 0.00 37.09 3.18
2088 2144 5.125739 CGACTACCTTTGGTCTAGAGTTCAT 59.874 44.000 0.00 0.00 37.09 2.57
2089 2145 6.532988 ACTACCTTTGGTCTAGAGTTCATC 57.467 41.667 0.00 0.00 37.09 2.92
2090 2146 6.257586 ACTACCTTTGGTCTAGAGTTCATCT 58.742 40.000 0.00 0.00 38.42 2.90
2091 2147 5.413309 ACCTTTGGTCTAGAGTTCATCTG 57.587 43.478 0.00 0.00 39.20 2.90
2092 2148 4.187694 CCTTTGGTCTAGAGTTCATCTGC 58.812 47.826 0.00 0.00 39.20 4.26
2093 2149 3.895232 TTGGTCTAGAGTTCATCTGCC 57.105 47.619 0.00 0.00 39.20 4.85
2094 2150 3.107402 TGGTCTAGAGTTCATCTGCCT 57.893 47.619 0.00 0.00 39.20 4.75
2095 2151 3.027412 TGGTCTAGAGTTCATCTGCCTC 58.973 50.000 0.00 0.00 39.20 4.70
2096 2152 3.295973 GGTCTAGAGTTCATCTGCCTCT 58.704 50.000 0.00 0.00 39.20 3.69
2097 2153 4.079730 TGGTCTAGAGTTCATCTGCCTCTA 60.080 45.833 0.00 0.00 39.20 2.43
2098 2154 4.277423 GGTCTAGAGTTCATCTGCCTCTAC 59.723 50.000 0.00 0.00 39.20 2.59
2099 2155 4.277423 GTCTAGAGTTCATCTGCCTCTACC 59.723 50.000 0.00 0.00 39.20 3.18
2100 2156 2.028130 AGAGTTCATCTGCCTCTACCG 58.972 52.381 0.00 0.00 36.69 4.02
2101 2157 0.461961 AGTTCATCTGCCTCTACCGC 59.538 55.000 0.00 0.00 0.00 5.68
2102 2158 0.461961 GTTCATCTGCCTCTACCGCT 59.538 55.000 0.00 0.00 0.00 5.52
2103 2159 1.681793 GTTCATCTGCCTCTACCGCTA 59.318 52.381 0.00 0.00 0.00 4.26
2104 2160 2.067365 TCATCTGCCTCTACCGCTAA 57.933 50.000 0.00 0.00 0.00 3.09
2105 2161 2.384828 TCATCTGCCTCTACCGCTAAA 58.615 47.619 0.00 0.00 0.00 1.85
2106 2162 2.362397 TCATCTGCCTCTACCGCTAAAG 59.638 50.000 0.00 0.00 0.00 1.85
2107 2163 1.112113 TCTGCCTCTACCGCTAAAGG 58.888 55.000 0.00 0.00 37.30 3.11
2108 2164 4.440181 GCCTCTACCGCTAAAGGC 57.560 61.111 0.00 0.00 46.76 4.35
2111 2167 2.797074 CCTCTACCGCTAAAGGCTAC 57.203 55.000 0.00 0.00 39.13 3.58
2112 2168 1.001597 CCTCTACCGCTAAAGGCTACG 60.002 57.143 0.00 0.00 39.13 3.51
2113 2169 1.945394 CTCTACCGCTAAAGGCTACGA 59.055 52.381 0.00 0.00 39.13 3.43
2114 2170 2.357009 CTCTACCGCTAAAGGCTACGAA 59.643 50.000 0.00 0.00 39.13 3.85
2115 2171 2.954318 TCTACCGCTAAAGGCTACGAAT 59.046 45.455 0.00 0.00 39.13 3.34
2116 2172 2.220479 ACCGCTAAAGGCTACGAATC 57.780 50.000 0.00 0.00 39.13 2.52
2117 2173 1.479323 ACCGCTAAAGGCTACGAATCA 59.521 47.619 0.00 0.00 39.13 2.57
2118 2174 2.093869 ACCGCTAAAGGCTACGAATCAA 60.094 45.455 0.00 0.00 39.13 2.57
2119 2175 2.540101 CCGCTAAAGGCTACGAATCAAG 59.460 50.000 0.00 0.00 39.13 3.02
2120 2176 2.033662 CGCTAAAGGCTACGAATCAAGC 60.034 50.000 0.00 0.00 39.13 4.01
2121 2177 2.936498 GCTAAAGGCTACGAATCAAGCA 59.064 45.455 6.87 0.00 40.61 3.91
2122 2178 3.374058 GCTAAAGGCTACGAATCAAGCAA 59.626 43.478 6.87 0.00 40.61 3.91
2123 2179 4.494855 GCTAAAGGCTACGAATCAAGCAAG 60.495 45.833 6.87 1.05 40.61 4.01
2124 2180 1.373570 AGGCTACGAATCAAGCAAGC 58.626 50.000 6.87 0.00 40.61 4.01
2125 2181 1.086696 GGCTACGAATCAAGCAAGCA 58.913 50.000 6.87 0.00 40.61 3.91
2126 2182 1.468520 GGCTACGAATCAAGCAAGCAA 59.531 47.619 6.87 0.00 40.61 3.91
2127 2183 2.098117 GGCTACGAATCAAGCAAGCAAT 59.902 45.455 6.87 0.00 40.61 3.56
2128 2184 3.428045 GGCTACGAATCAAGCAAGCAATT 60.428 43.478 6.87 0.00 40.61 2.32
2129 2185 3.545078 GCTACGAATCAAGCAAGCAATTG 59.455 43.478 0.00 0.00 38.63 2.32
2130 2186 3.921119 ACGAATCAAGCAAGCAATTGA 57.079 38.095 10.34 0.00 39.59 2.57
2131 2187 3.568538 ACGAATCAAGCAAGCAATTGAC 58.431 40.909 10.34 0.30 38.19 3.18
2132 2188 2.591148 CGAATCAAGCAAGCAATTGACG 59.409 45.455 10.34 0.00 38.19 4.35
2133 2189 1.986698 ATCAAGCAAGCAATTGACGC 58.013 45.000 10.34 7.82 38.19 5.19
2134 2190 0.953727 TCAAGCAAGCAATTGACGCT 59.046 45.000 10.34 10.12 42.98 5.07
2142 2198 2.710377 AGCAATTGACGCTTACATGGA 58.290 42.857 10.34 0.00 35.82 3.41
2143 2199 2.420022 AGCAATTGACGCTTACATGGAC 59.580 45.455 10.34 0.00 35.82 4.02
2144 2200 2.161410 GCAATTGACGCTTACATGGACA 59.839 45.455 10.34 0.00 0.00 4.02
2145 2201 3.365868 GCAATTGACGCTTACATGGACAA 60.366 43.478 10.34 0.00 0.00 3.18
2146 2202 4.158384 CAATTGACGCTTACATGGACAAC 58.842 43.478 0.00 0.00 0.00 3.32
2147 2203 1.803334 TGACGCTTACATGGACAACC 58.197 50.000 0.00 0.00 0.00 3.77
2161 2217 5.755409 TGGACAACCACATCACTTAGTAT 57.245 39.130 0.00 0.00 41.77 2.12
2162 2218 6.860790 TGGACAACCACATCACTTAGTATA 57.139 37.500 0.00 0.00 41.77 1.47
2163 2219 7.432148 TGGACAACCACATCACTTAGTATAT 57.568 36.000 0.00 0.00 41.77 0.86
2164 2220 7.272244 TGGACAACCACATCACTTAGTATATG 58.728 38.462 5.63 5.63 41.77 1.78
2165 2221 6.706270 GGACAACCACATCACTTAGTATATGG 59.294 42.308 10.36 7.05 35.97 2.74
2166 2222 6.591935 ACAACCACATCACTTAGTATATGGG 58.408 40.000 10.36 6.90 0.00 4.00
2167 2223 6.157994 ACAACCACATCACTTAGTATATGGGT 59.842 38.462 10.36 10.69 0.00 4.51
2168 2224 7.346175 ACAACCACATCACTTAGTATATGGGTA 59.654 37.037 14.30 0.00 0.00 3.69
2169 2225 7.924358 ACCACATCACTTAGTATATGGGTAA 57.076 36.000 13.25 0.00 0.00 2.85
2170 2226 8.506196 ACCACATCACTTAGTATATGGGTAAT 57.494 34.615 13.25 0.00 0.00 1.89
2171 2227 8.945193 ACCACATCACTTAGTATATGGGTAATT 58.055 33.333 13.25 0.00 0.00 1.40
2172 2228 9.793259 CCACATCACTTAGTATATGGGTAATTT 57.207 33.333 10.36 0.00 0.00 1.82
2197 2253 6.939132 ATTTCATCTATTGCAGAGTCAAGG 57.061 37.500 0.00 0.00 36.48 3.61
2198 2254 5.682234 TTCATCTATTGCAGAGTCAAGGA 57.318 39.130 0.00 0.00 36.48 3.36
2199 2255 5.682234 TCATCTATTGCAGAGTCAAGGAA 57.318 39.130 0.00 0.00 36.48 3.36
2200 2256 6.244552 TCATCTATTGCAGAGTCAAGGAAT 57.755 37.500 7.34 7.34 36.48 3.01
2201 2257 6.656902 TCATCTATTGCAGAGTCAAGGAATT 58.343 36.000 7.45 0.00 36.48 2.17
2202 2258 6.541278 TCATCTATTGCAGAGTCAAGGAATTG 59.459 38.462 7.45 6.38 36.48 2.32
2203 2259 6.053632 TCTATTGCAGAGTCAAGGAATTGA 57.946 37.500 7.45 8.18 0.00 2.57
2217 2273 7.874940 TCAAGGAATTGACATTTCTTACAGTG 58.125 34.615 9.33 0.00 36.21 3.66
2218 2274 7.719193 TCAAGGAATTGACATTTCTTACAGTGA 59.281 33.333 0.00 1.75 36.21 3.41
2219 2275 7.678947 AGGAATTGACATTTCTTACAGTGAG 57.321 36.000 0.00 0.00 0.00 3.51
2220 2276 7.227156 AGGAATTGACATTTCTTACAGTGAGT 58.773 34.615 0.00 0.00 0.00 3.41
2221 2277 7.721399 AGGAATTGACATTTCTTACAGTGAGTT 59.279 33.333 0.00 0.00 0.00 3.01
2222 2278 7.805071 GGAATTGACATTTCTTACAGTGAGTTG 59.195 37.037 0.00 0.00 0.00 3.16
2223 2279 6.618287 TTGACATTTCTTACAGTGAGTTGG 57.382 37.500 0.00 0.00 0.00 3.77
2224 2280 5.680619 TGACATTTCTTACAGTGAGTTGGT 58.319 37.500 0.00 0.00 0.00 3.67
2225 2281 6.119536 TGACATTTCTTACAGTGAGTTGGTT 58.880 36.000 0.00 0.00 0.00 3.67
2226 2282 6.038161 TGACATTTCTTACAGTGAGTTGGTTG 59.962 38.462 0.00 0.00 0.00 3.77
2227 2283 4.893424 TTTCTTACAGTGAGTTGGTTGC 57.107 40.909 0.00 0.00 0.00 4.17
2228 2284 2.479837 TCTTACAGTGAGTTGGTTGCG 58.520 47.619 0.00 0.00 0.00 4.85
2229 2285 2.159014 TCTTACAGTGAGTTGGTTGCGT 60.159 45.455 0.00 0.00 0.00 5.24
2230 2286 2.319136 TACAGTGAGTTGGTTGCGTT 57.681 45.000 0.00 0.00 0.00 4.84
2231 2287 1.014352 ACAGTGAGTTGGTTGCGTTC 58.986 50.000 0.00 0.00 0.00 3.95
2232 2288 1.013596 CAGTGAGTTGGTTGCGTTCA 58.986 50.000 0.00 0.00 0.00 3.18
2233 2289 1.014352 AGTGAGTTGGTTGCGTTCAC 58.986 50.000 0.00 0.00 38.68 3.18
2234 2290 0.730265 GTGAGTTGGTTGCGTTCACA 59.270 50.000 0.00 0.00 38.36 3.58
2235 2291 1.333619 GTGAGTTGGTTGCGTTCACAT 59.666 47.619 0.00 0.00 38.36 3.21
2236 2292 1.601903 TGAGTTGGTTGCGTTCACATC 59.398 47.619 0.00 0.00 0.00 3.06
2237 2293 1.601903 GAGTTGGTTGCGTTCACATCA 59.398 47.619 0.00 0.00 0.00 3.07
2238 2294 1.603802 AGTTGGTTGCGTTCACATCAG 59.396 47.619 0.00 0.00 0.00 2.90
2239 2295 1.601903 GTTGGTTGCGTTCACATCAGA 59.398 47.619 0.00 0.00 0.00 3.27
2240 2296 1.511850 TGGTTGCGTTCACATCAGAG 58.488 50.000 0.00 0.00 0.00 3.35
2241 2297 1.202639 TGGTTGCGTTCACATCAGAGT 60.203 47.619 0.00 0.00 0.00 3.24
2242 2298 1.461127 GGTTGCGTTCACATCAGAGTC 59.539 52.381 0.00 0.00 0.00 3.36
2243 2299 2.135139 GTTGCGTTCACATCAGAGTCA 58.865 47.619 0.00 0.00 0.00 3.41
2244 2300 2.524569 TGCGTTCACATCAGAGTCAA 57.475 45.000 0.00 0.00 0.00 3.18
2245 2301 3.044235 TGCGTTCACATCAGAGTCAAT 57.956 42.857 0.00 0.00 0.00 2.57
2246 2302 2.995939 TGCGTTCACATCAGAGTCAATC 59.004 45.455 0.00 0.00 0.00 2.67
2247 2303 2.995939 GCGTTCACATCAGAGTCAATCA 59.004 45.455 0.00 0.00 0.00 2.57
2248 2304 3.181526 GCGTTCACATCAGAGTCAATCAC 60.182 47.826 0.00 0.00 0.00 3.06
2249 2305 3.989817 CGTTCACATCAGAGTCAATCACA 59.010 43.478 0.00 0.00 0.00 3.58
2250 2306 4.091075 CGTTCACATCAGAGTCAATCACAG 59.909 45.833 0.00 0.00 0.00 3.66
2251 2307 4.879197 TCACATCAGAGTCAATCACAGT 57.121 40.909 0.00 0.00 0.00 3.55
2252 2308 4.563061 TCACATCAGAGTCAATCACAGTG 58.437 43.478 0.00 0.00 0.00 3.66
2253 2309 4.281688 TCACATCAGAGTCAATCACAGTGA 59.718 41.667 5.50 5.50 0.00 3.41
2254 2310 4.388165 CACATCAGAGTCAATCACAGTGAC 59.612 45.833 5.05 0.00 44.75 3.67
2263 2319 6.170675 GTCAATCACAGTGACTAAATCCAC 57.829 41.667 5.05 0.00 41.80 4.02
2264 2320 5.700832 GTCAATCACAGTGACTAAATCCACA 59.299 40.000 5.05 0.00 41.80 4.17
2265 2321 5.934043 TCAATCACAGTGACTAAATCCACAG 59.066 40.000 5.05 0.00 35.84 3.66
2266 2322 5.745312 ATCACAGTGACTAAATCCACAGA 57.255 39.130 5.05 0.00 35.84 3.41
2267 2323 5.139435 TCACAGTGACTAAATCCACAGAG 57.861 43.478 0.00 0.00 35.84 3.35
2268 2324 4.021104 TCACAGTGACTAAATCCACAGAGG 60.021 45.833 0.00 0.00 35.84 3.69
2269 2325 3.265791 CAGTGACTAAATCCACAGAGGC 58.734 50.000 0.00 0.00 37.29 4.70
2270 2326 2.906389 AGTGACTAAATCCACAGAGGCA 59.094 45.455 0.00 0.00 37.29 4.75
2271 2327 3.327757 AGTGACTAAATCCACAGAGGCAA 59.672 43.478 0.00 0.00 37.29 4.52
2272 2328 4.072131 GTGACTAAATCCACAGAGGCAAA 58.928 43.478 0.00 0.00 37.29 3.68
2273 2329 4.072131 TGACTAAATCCACAGAGGCAAAC 58.928 43.478 0.00 0.00 37.29 2.93
2274 2330 4.072131 GACTAAATCCACAGAGGCAAACA 58.928 43.478 0.00 0.00 37.29 2.83
2275 2331 4.666512 ACTAAATCCACAGAGGCAAACAT 58.333 39.130 0.00 0.00 37.29 2.71
2276 2332 5.079643 ACTAAATCCACAGAGGCAAACATT 58.920 37.500 0.00 0.00 37.29 2.71
2277 2333 4.525912 AAATCCACAGAGGCAAACATTC 57.474 40.909 0.00 0.00 37.29 2.67
2278 2334 1.522668 TCCACAGAGGCAAACATTCG 58.477 50.000 0.00 0.00 37.29 3.34
2279 2335 1.071542 TCCACAGAGGCAAACATTCGA 59.928 47.619 0.00 0.00 37.29 3.71
2280 2336 2.086869 CCACAGAGGCAAACATTCGAT 58.913 47.619 0.00 0.00 0.00 3.59
2281 2337 2.489329 CCACAGAGGCAAACATTCGATT 59.511 45.455 0.00 0.00 0.00 3.34
2282 2338 3.057315 CCACAGAGGCAAACATTCGATTT 60.057 43.478 0.00 0.00 0.00 2.17
2283 2339 4.155826 CCACAGAGGCAAACATTCGATTTA 59.844 41.667 0.00 0.00 0.00 1.40
2284 2340 5.163622 CCACAGAGGCAAACATTCGATTTAT 60.164 40.000 0.00 0.00 0.00 1.40
2285 2341 6.324819 CACAGAGGCAAACATTCGATTTATT 58.675 36.000 0.00 0.00 0.00 1.40
2286 2342 6.808212 CACAGAGGCAAACATTCGATTTATTT 59.192 34.615 0.00 0.00 0.00 1.40
2287 2343 7.967854 CACAGAGGCAAACATTCGATTTATTTA 59.032 33.333 0.00 0.00 0.00 1.40
2288 2344 8.519526 ACAGAGGCAAACATTCGATTTATTTAA 58.480 29.630 0.00 0.00 0.00 1.52
2289 2345 9.013490 CAGAGGCAAACATTCGATTTATTTAAG 57.987 33.333 0.00 0.00 0.00 1.85
2290 2346 8.956426 AGAGGCAAACATTCGATTTATTTAAGA 58.044 29.630 0.00 0.00 0.00 2.10
2291 2347 9.567848 GAGGCAAACATTCGATTTATTTAAGAA 57.432 29.630 0.00 0.00 0.00 2.52
2292 2348 9.921637 AGGCAAACATTCGATTTATTTAAGAAA 57.078 25.926 0.00 0.00 0.00 2.52
2298 2354 9.774742 ACATTCGATTTATTTAAGAAAGTCTGC 57.225 29.630 0.00 0.00 0.00 4.26
2299 2355 9.773328 CATTCGATTTATTTAAGAAAGTCTGCA 57.227 29.630 0.00 0.00 0.00 4.41
2300 2356 9.774742 ATTCGATTTATTTAAGAAAGTCTGCAC 57.225 29.630 0.00 0.00 0.00 4.57
2301 2357 7.748847 TCGATTTATTTAAGAAAGTCTGCACC 58.251 34.615 0.00 0.00 0.00 5.01
2302 2358 7.606456 TCGATTTATTTAAGAAAGTCTGCACCT 59.394 33.333 0.00 0.00 0.00 4.00
2303 2359 7.905493 CGATTTATTTAAGAAAGTCTGCACCTC 59.095 37.037 0.00 0.00 0.00 3.85
2304 2360 8.870075 ATTTATTTAAGAAAGTCTGCACCTCT 57.130 30.769 0.00 0.00 0.00 3.69
2305 2361 8.691661 TTTATTTAAGAAAGTCTGCACCTCTT 57.308 30.769 0.00 0.00 32.48 2.85
2306 2362 9.787435 TTTATTTAAGAAAGTCTGCACCTCTTA 57.213 29.630 0.00 0.00 31.01 2.10
2307 2363 7.674471 ATTTAAGAAAGTCTGCACCTCTTAC 57.326 36.000 0.00 0.00 31.61 2.34
2308 2364 4.689612 AAGAAAGTCTGCACCTCTTACA 57.310 40.909 0.00 0.00 0.00 2.41
2309 2365 4.689612 AGAAAGTCTGCACCTCTTACAA 57.310 40.909 0.00 0.00 0.00 2.41
2310 2366 4.381411 AGAAAGTCTGCACCTCTTACAAC 58.619 43.478 0.00 0.00 0.00 3.32
2311 2367 2.841442 AGTCTGCACCTCTTACAACC 57.159 50.000 0.00 0.00 0.00 3.77
2312 2368 2.047061 AGTCTGCACCTCTTACAACCA 58.953 47.619 0.00 0.00 0.00 3.67
2313 2369 2.438021 AGTCTGCACCTCTTACAACCAA 59.562 45.455 0.00 0.00 0.00 3.67
2314 2370 3.118038 AGTCTGCACCTCTTACAACCAAA 60.118 43.478 0.00 0.00 0.00 3.28
2315 2371 3.630312 GTCTGCACCTCTTACAACCAAAA 59.370 43.478 0.00 0.00 0.00 2.44
2316 2372 4.278419 GTCTGCACCTCTTACAACCAAAAT 59.722 41.667 0.00 0.00 0.00 1.82
2317 2373 5.472137 GTCTGCACCTCTTACAACCAAAATA 59.528 40.000 0.00 0.00 0.00 1.40
2318 2374 6.016610 GTCTGCACCTCTTACAACCAAAATAA 60.017 38.462 0.00 0.00 0.00 1.40
2319 2375 6.206634 TCTGCACCTCTTACAACCAAAATAAG 59.793 38.462 0.00 0.00 0.00 1.73
2320 2376 6.065374 TGCACCTCTTACAACCAAAATAAGA 58.935 36.000 0.00 0.00 34.55 2.10
2321 2377 6.206634 TGCACCTCTTACAACCAAAATAAGAG 59.793 38.462 11.58 11.58 46.11 2.85
2322 2378 6.612306 CACCTCTTACAACCAAAATAAGAGC 58.388 40.000 12.67 0.00 45.58 4.09
2323 2379 5.710567 ACCTCTTACAACCAAAATAAGAGCC 59.289 40.000 12.67 0.00 45.58 4.70
2324 2380 5.710099 CCTCTTACAACCAAAATAAGAGCCA 59.290 40.000 12.67 0.00 45.58 4.75
2325 2381 6.378280 CCTCTTACAACCAAAATAAGAGCCAT 59.622 38.462 12.67 0.00 45.58 4.40
2326 2382 7.556275 CCTCTTACAACCAAAATAAGAGCCATA 59.444 37.037 12.67 0.00 45.58 2.74
2327 2383 9.125026 CTCTTACAACCAAAATAAGAGCCATAT 57.875 33.333 7.18 0.00 42.86 1.78
2328 2384 9.120538 TCTTACAACCAAAATAAGAGCCATATC 57.879 33.333 0.00 0.00 32.48 1.63
2329 2385 9.125026 CTTACAACCAAAATAAGAGCCATATCT 57.875 33.333 0.00 0.00 0.00 1.98
2330 2386 7.573968 ACAACCAAAATAAGAGCCATATCTC 57.426 36.000 0.00 0.00 0.00 2.75
2331 2387 7.118723 ACAACCAAAATAAGAGCCATATCTCA 58.881 34.615 0.00 0.00 35.59 3.27
2332 2388 7.067494 ACAACCAAAATAAGAGCCATATCTCAC 59.933 37.037 0.00 0.00 35.59 3.51
2333 2389 6.662755 ACCAAAATAAGAGCCATATCTCACA 58.337 36.000 0.00 0.00 35.59 3.58
2334 2390 7.293073 ACCAAAATAAGAGCCATATCTCACAT 58.707 34.615 0.00 0.00 35.59 3.21
2335 2391 7.446625 ACCAAAATAAGAGCCATATCTCACATC 59.553 37.037 0.00 0.00 35.59 3.06
2336 2392 7.446319 CCAAAATAAGAGCCATATCTCACATCA 59.554 37.037 0.00 0.00 35.59 3.07
2337 2393 9.011095 CAAAATAAGAGCCATATCTCACATCAT 57.989 33.333 0.00 0.00 35.59 2.45
2339 2395 9.887629 AAATAAGAGCCATATCTCACATCATAG 57.112 33.333 0.00 0.00 35.59 2.23
2340 2396 8.835550 ATAAGAGCCATATCTCACATCATAGA 57.164 34.615 0.00 0.00 35.59 1.98
2341 2397 7.736881 AAGAGCCATATCTCACATCATAGAT 57.263 36.000 0.00 0.00 35.59 1.98
2342 2398 8.835550 AAGAGCCATATCTCACATCATAGATA 57.164 34.615 0.00 0.00 38.66 1.98
2343 2399 8.236585 AGAGCCATATCTCACATCATAGATAC 57.763 38.462 0.00 0.00 37.49 2.24
2344 2400 7.838193 AGAGCCATATCTCACATCATAGATACA 59.162 37.037 0.00 0.00 37.49 2.29
2345 2401 7.780064 AGCCATATCTCACATCATAGATACAC 58.220 38.462 0.00 0.00 37.49 2.90
2346 2402 7.398332 AGCCATATCTCACATCATAGATACACA 59.602 37.037 0.00 0.00 37.49 3.72
2347 2403 8.202811 GCCATATCTCACATCATAGATACACAT 58.797 37.037 0.00 0.00 37.49 3.21
2368 2424 9.941325 ACACATAGAAAATGGAATATTTTGCAA 57.059 25.926 0.00 0.00 36.71 4.08
2373 2429 8.205131 AGAAAATGGAATATTTTGCAAGATGC 57.795 30.769 12.50 0.62 45.29 3.91
2374 2430 8.044908 AGAAAATGGAATATTTTGCAAGATGCT 58.955 29.630 12.50 0.00 45.31 3.79
2375 2431 7.548196 AAATGGAATATTTTGCAAGATGCTG 57.452 32.000 12.50 0.00 45.31 4.41
2376 2432 5.013568 TGGAATATTTTGCAAGATGCTGG 57.986 39.130 12.50 0.00 45.31 4.85
2377 2433 4.141892 TGGAATATTTTGCAAGATGCTGGG 60.142 41.667 12.50 0.00 45.31 4.45
2378 2434 4.141869 GGAATATTTTGCAAGATGCTGGGT 60.142 41.667 12.50 0.00 45.31 4.51
2379 2435 5.068987 GGAATATTTTGCAAGATGCTGGGTA 59.931 40.000 12.50 0.00 45.31 3.69
2380 2436 5.779529 ATATTTTGCAAGATGCTGGGTAG 57.220 39.130 12.50 0.00 45.31 3.18
2381 2437 2.584835 TTTGCAAGATGCTGGGTAGT 57.415 45.000 0.00 0.00 45.31 2.73
2382 2438 2.584835 TTGCAAGATGCTGGGTAGTT 57.415 45.000 0.00 0.00 45.31 2.24
2383 2439 2.584835 TGCAAGATGCTGGGTAGTTT 57.415 45.000 3.78 0.00 45.31 2.66
2384 2440 2.161855 TGCAAGATGCTGGGTAGTTTG 58.838 47.619 3.78 0.00 45.31 2.93
2385 2441 2.162681 GCAAGATGCTGGGTAGTTTGT 58.837 47.619 0.00 0.00 40.96 2.83
2386 2442 2.558359 GCAAGATGCTGGGTAGTTTGTT 59.442 45.455 0.00 0.00 40.96 2.83
2387 2443 3.756434 GCAAGATGCTGGGTAGTTTGTTA 59.244 43.478 0.00 0.00 40.96 2.41
2388 2444 4.217550 GCAAGATGCTGGGTAGTTTGTTAA 59.782 41.667 0.00 0.00 40.96 2.01
2389 2445 5.278758 GCAAGATGCTGGGTAGTTTGTTAAA 60.279 40.000 0.00 0.00 40.96 1.52
2390 2446 6.572314 GCAAGATGCTGGGTAGTTTGTTAAAT 60.572 38.462 0.00 0.00 40.96 1.40
2391 2447 7.362574 GCAAGATGCTGGGTAGTTTGTTAAATA 60.363 37.037 0.00 0.00 40.96 1.40
2392 2448 8.686334 CAAGATGCTGGGTAGTTTGTTAAATAT 58.314 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 6.173339 GGATGGATCACTTGTTCTTCTTGTA 58.827 40.000 0.00 0.00 0.00 2.41
155 156 9.099454 GTGTTTTGTAATACTAGAGAAGGGATG 57.901 37.037 0.00 0.00 0.00 3.51
239 240 8.701540 GTCTTCTTGTAGCTAGTTACTGAAAAC 58.298 37.037 16.50 13.14 0.00 2.43
325 326 9.120538 GAGCAAGATACTAAACATATTTTGGGA 57.879 33.333 0.00 0.00 29.23 4.37
413 414 4.686554 GCCAGTAACTATCAAGCTTATCCG 59.313 45.833 0.00 0.00 0.00 4.18
516 517 1.202382 AGGGAGTAGTTAACATCGCGC 60.202 52.381 8.61 0.00 0.00 6.86
530 531 7.509659 AGACATATATTTAGGAACGAAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
593 594 9.125026 ACATATTTTAGATTGTGGATTCACTCC 57.875 33.333 5.55 0.00 43.94 3.85
678 683 7.465900 AATTTTCTGGATAATACTCCCTCCA 57.534 36.000 0.00 0.00 36.40 3.86
708 713 3.941483 ACTATCCAAGCATAGTGTTGCAC 59.059 43.478 0.00 0.00 45.23 4.57
905 922 6.097915 ACAGAAATACAGAAGAAGACGGAA 57.902 37.500 0.00 0.00 0.00 4.30
990 1008 2.254546 TGGGCTCCATGCTTATAACG 57.745 50.000 0.00 0.00 42.39 3.18
1377 1395 4.065088 TCAATTCTCAGGAAAGAACACCG 58.935 43.478 0.00 0.00 38.06 4.94
1524 1543 5.918608 TGATCTACAGAACAGGATTAAGGC 58.081 41.667 0.00 0.00 0.00 4.35
1719 1745 4.103153 CCTGAGGCTATACCCATTCTTGAA 59.897 45.833 0.00 0.00 40.58 2.69
1750 1776 4.098501 AGGAGACAGAAAAGCAAACCAAAG 59.901 41.667 0.00 0.00 0.00 2.77
1786 1812 5.705441 ACACTGGCAGATAAATCTCGAAAAA 59.295 36.000 23.66 0.00 34.22 1.94
1791 1817 5.551760 AAAACACTGGCAGATAAATCTCG 57.448 39.130 23.66 0.31 34.22 4.04
1805 1835 6.525628 CAGTTATCTGCAGCATAAAAACACTG 59.474 38.462 9.47 12.67 34.79 3.66
1814 1844 6.670695 TCTAATCCAGTTATCTGCAGCATA 57.329 37.500 9.47 5.34 40.09 3.14
1816 1846 5.104776 ACTTCTAATCCAGTTATCTGCAGCA 60.105 40.000 9.47 0.00 40.09 4.41
1825 1855 5.125097 GTCTCCGTCACTTCTAATCCAGTTA 59.875 44.000 0.00 0.00 0.00 2.24
1827 1857 3.444388 GTCTCCGTCACTTCTAATCCAGT 59.556 47.826 0.00 0.00 0.00 4.00
1839 1869 1.668151 GGCCTGTTGTCTCCGTCAC 60.668 63.158 0.00 0.00 0.00 3.67
1867 1897 3.522759 TGTTTACCATCCAGGGTAGTGA 58.477 45.455 0.00 0.00 43.91 3.41
1872 1908 3.076785 TGGATTTGTTTACCATCCAGGGT 59.923 43.478 6.74 0.00 41.35 4.34
1886 1922 3.520290 CATTGCTGCAGATGGATTTGT 57.480 42.857 20.43 0.00 0.00 2.83
1924 1964 4.082845 TGAAGAACCAGGTGTTGTTTTCA 58.917 39.130 0.00 0.00 40.26 2.69
1925 1965 4.712122 TGAAGAACCAGGTGTTGTTTTC 57.288 40.909 0.00 0.00 40.26 2.29
1926 1966 4.620567 GCTTGAAGAACCAGGTGTTGTTTT 60.621 41.667 0.00 0.00 40.26 2.43
1927 1967 3.119137 GCTTGAAGAACCAGGTGTTGTTT 60.119 43.478 0.00 0.00 40.26 2.83
1928 1968 2.427095 GCTTGAAGAACCAGGTGTTGTT 59.573 45.455 0.00 0.00 42.63 2.83
1931 1971 2.301346 CTGCTTGAAGAACCAGGTGTT 58.699 47.619 0.00 0.00 40.81 3.32
1963 2003 1.538047 GGCAGATGGAGTTTGCAAGA 58.462 50.000 0.00 0.00 39.54 3.02
1970 2010 2.967270 GCAAAGGGCAGATGGAGTT 58.033 52.632 0.00 0.00 43.97 3.01
1981 2021 7.495135 AAATTTTTATTGACAGTGCAAAGGG 57.505 32.000 0.00 0.00 0.00 3.95
2002 2042 9.924650 AACTTCGAATAAGTGAGTACAGTAAAT 57.075 29.630 0.00 0.00 0.00 1.40
2009 2049 9.493206 CTCTTCTAACTTCGAATAAGTGAGTAC 57.507 37.037 0.00 0.00 31.88 2.73
2011 2051 8.113173 ACTCTTCTAACTTCGAATAAGTGAGT 57.887 34.615 0.00 11.12 31.88 3.41
2012 2052 8.973835 AACTCTTCTAACTTCGAATAAGTGAG 57.026 34.615 0.00 10.60 31.31 3.51
2060 2116 0.608640 AGACCAAAGGTAGTCGCAGG 59.391 55.000 0.00 0.00 35.25 4.85
2061 2117 2.753452 TCTAGACCAAAGGTAGTCGCAG 59.247 50.000 0.00 0.00 35.25 5.18
2062 2118 2.753452 CTCTAGACCAAAGGTAGTCGCA 59.247 50.000 0.00 0.00 35.25 5.10
2063 2119 2.754002 ACTCTAGACCAAAGGTAGTCGC 59.246 50.000 0.00 0.00 35.25 5.19
2064 2120 4.458295 TGAACTCTAGACCAAAGGTAGTCG 59.542 45.833 0.00 0.00 35.25 4.18
2065 2121 5.979288 TGAACTCTAGACCAAAGGTAGTC 57.021 43.478 0.00 0.00 35.25 2.59
2066 2122 6.153680 CAGATGAACTCTAGACCAAAGGTAGT 59.846 42.308 0.00 0.00 31.14 2.73
2067 2123 6.568869 CAGATGAACTCTAGACCAAAGGTAG 58.431 44.000 0.00 0.00 31.14 3.18
2068 2124 5.105310 GCAGATGAACTCTAGACCAAAGGTA 60.105 44.000 0.00 0.00 31.14 3.08
2069 2125 4.323104 GCAGATGAACTCTAGACCAAAGGT 60.323 45.833 0.00 0.00 32.98 3.50
2070 2126 4.187694 GCAGATGAACTCTAGACCAAAGG 58.812 47.826 0.00 0.00 31.13 3.11
2071 2127 4.081198 AGGCAGATGAACTCTAGACCAAAG 60.081 45.833 0.00 0.00 31.13 2.77
2072 2128 3.840666 AGGCAGATGAACTCTAGACCAAA 59.159 43.478 0.00 0.00 31.13 3.28
2073 2129 3.445008 AGGCAGATGAACTCTAGACCAA 58.555 45.455 0.00 0.00 31.13 3.67
2074 2130 3.027412 GAGGCAGATGAACTCTAGACCA 58.973 50.000 0.00 0.00 31.13 4.02
2075 2131 3.295973 AGAGGCAGATGAACTCTAGACC 58.704 50.000 5.90 0.00 39.65 3.85
2076 2132 4.277423 GGTAGAGGCAGATGAACTCTAGAC 59.723 50.000 12.26 6.96 42.60 2.59
2077 2133 4.465886 GGTAGAGGCAGATGAACTCTAGA 58.534 47.826 12.26 0.00 42.60 2.43
2078 2134 3.252215 CGGTAGAGGCAGATGAACTCTAG 59.748 52.174 12.26 0.00 42.60 2.43
2079 2135 3.215151 CGGTAGAGGCAGATGAACTCTA 58.785 50.000 9.35 9.35 41.50 2.43
2080 2136 2.028130 CGGTAGAGGCAGATGAACTCT 58.972 52.381 10.85 10.85 43.50 3.24
2081 2137 1.537135 GCGGTAGAGGCAGATGAACTC 60.537 57.143 0.00 0.00 0.00 3.01
2082 2138 0.461961 GCGGTAGAGGCAGATGAACT 59.538 55.000 0.00 0.00 0.00 3.01
2083 2139 0.461961 AGCGGTAGAGGCAGATGAAC 59.538 55.000 0.00 0.00 0.00 3.18
2084 2140 2.067365 TAGCGGTAGAGGCAGATGAA 57.933 50.000 0.00 0.00 0.00 2.57
2085 2141 2.067365 TTAGCGGTAGAGGCAGATGA 57.933 50.000 0.00 0.00 0.00 2.92
2086 2142 2.546795 CCTTTAGCGGTAGAGGCAGATG 60.547 54.545 17.19 0.00 0.00 2.90
2087 2143 1.689273 CCTTTAGCGGTAGAGGCAGAT 59.311 52.381 17.19 0.00 0.00 2.90
2088 2144 1.112113 CCTTTAGCGGTAGAGGCAGA 58.888 55.000 17.19 0.00 0.00 4.26
2089 2145 3.669354 CCTTTAGCGGTAGAGGCAG 57.331 57.895 17.19 0.00 0.00 4.85
2091 2147 4.440181 GCCTTTAGCGGTAGAGGC 57.560 61.111 32.35 32.35 46.35 4.70
2100 2156 2.936498 TGCTTGATTCGTAGCCTTTAGC 59.064 45.455 7.79 0.00 44.25 3.09
2101 2157 4.494855 GCTTGCTTGATTCGTAGCCTTTAG 60.495 45.833 7.79 3.16 36.56 1.85
2102 2158 3.374058 GCTTGCTTGATTCGTAGCCTTTA 59.626 43.478 7.79 0.00 36.56 1.85
2103 2159 2.162408 GCTTGCTTGATTCGTAGCCTTT 59.838 45.455 7.79 0.00 36.56 3.11
2104 2160 1.740025 GCTTGCTTGATTCGTAGCCTT 59.260 47.619 7.79 0.00 36.56 4.35
2105 2161 1.339055 TGCTTGCTTGATTCGTAGCCT 60.339 47.619 7.79 0.00 36.56 4.58
2106 2162 1.086696 TGCTTGCTTGATTCGTAGCC 58.913 50.000 7.79 0.00 36.56 3.93
2107 2163 2.900122 TTGCTTGCTTGATTCGTAGC 57.100 45.000 4.20 4.20 37.89 3.58
2108 2164 4.790140 GTCAATTGCTTGCTTGATTCGTAG 59.210 41.667 0.00 0.00 34.18 3.51
2109 2165 4.668941 CGTCAATTGCTTGCTTGATTCGTA 60.669 41.667 0.00 0.00 34.18 3.43
2110 2166 3.568538 GTCAATTGCTTGCTTGATTCGT 58.431 40.909 0.00 0.00 34.18 3.85
2111 2167 2.591148 CGTCAATTGCTTGCTTGATTCG 59.409 45.455 0.00 0.00 34.18 3.34
2112 2168 2.343544 GCGTCAATTGCTTGCTTGATTC 59.656 45.455 0.00 0.00 34.18 2.52
2113 2169 2.029649 AGCGTCAATTGCTTGCTTGATT 60.030 40.909 11.55 0.00 40.48 2.57
2114 2170 1.542915 AGCGTCAATTGCTTGCTTGAT 59.457 42.857 11.55 0.00 40.48 2.57
2115 2171 0.953727 AGCGTCAATTGCTTGCTTGA 59.046 45.000 11.55 0.00 40.48 3.02
2116 2172 3.484524 AGCGTCAATTGCTTGCTTG 57.515 47.368 11.55 0.00 40.48 4.01
2122 2178 2.420022 GTCCATGTAAGCGTCAATTGCT 59.580 45.455 0.00 0.00 46.68 3.91
2123 2179 2.161410 TGTCCATGTAAGCGTCAATTGC 59.839 45.455 0.00 0.00 0.00 3.56
2124 2180 4.158384 GTTGTCCATGTAAGCGTCAATTG 58.842 43.478 0.00 0.00 0.00 2.32
2125 2181 3.190535 GGTTGTCCATGTAAGCGTCAATT 59.809 43.478 0.00 0.00 0.00 2.32
2126 2182 2.747446 GGTTGTCCATGTAAGCGTCAAT 59.253 45.455 0.00 0.00 0.00 2.57
2127 2183 2.147958 GGTTGTCCATGTAAGCGTCAA 58.852 47.619 0.00 0.00 0.00 3.18
2128 2184 1.070914 TGGTTGTCCATGTAAGCGTCA 59.929 47.619 0.00 0.00 39.03 4.35
2129 2185 1.463444 GTGGTTGTCCATGTAAGCGTC 59.537 52.381 0.00 0.00 46.20 5.19
2130 2186 1.202710 TGTGGTTGTCCATGTAAGCGT 60.203 47.619 0.00 0.00 46.20 5.07
2131 2187 1.518325 TGTGGTTGTCCATGTAAGCG 58.482 50.000 0.00 0.00 46.20 4.68
2132 2188 3.081061 TGATGTGGTTGTCCATGTAAGC 58.919 45.455 0.00 0.00 46.20 3.09
2133 2189 4.326826 AGTGATGTGGTTGTCCATGTAAG 58.673 43.478 0.00 0.00 46.20 2.34
2134 2190 4.365514 AGTGATGTGGTTGTCCATGTAA 57.634 40.909 0.00 0.00 46.20 2.41
2135 2191 4.365514 AAGTGATGTGGTTGTCCATGTA 57.634 40.909 0.00 0.00 46.20 2.29
2136 2192 2.957402 AGTGATGTGGTTGTCCATGT 57.043 45.000 0.00 0.00 46.20 3.21
2137 2193 4.326826 ACTAAGTGATGTGGTTGTCCATG 58.673 43.478 0.00 0.00 46.20 3.66
2138 2194 4.640771 ACTAAGTGATGTGGTTGTCCAT 57.359 40.909 0.00 0.00 46.20 3.41
2139 2195 5.755409 ATACTAAGTGATGTGGTTGTCCA 57.245 39.130 0.00 0.00 42.05 4.02
2140 2196 6.706270 CCATATACTAAGTGATGTGGTTGTCC 59.294 42.308 0.00 0.00 31.54 4.02
2141 2197 6.706270 CCCATATACTAAGTGATGTGGTTGTC 59.294 42.308 0.00 0.00 33.64 3.18
2142 2198 6.157994 ACCCATATACTAAGTGATGTGGTTGT 59.842 38.462 0.00 0.00 33.64 3.32
2143 2199 6.591935 ACCCATATACTAAGTGATGTGGTTG 58.408 40.000 0.00 0.00 33.64 3.77
2144 2200 6.824958 ACCCATATACTAAGTGATGTGGTT 57.175 37.500 0.00 0.00 33.64 3.67
2145 2201 7.924358 TTACCCATATACTAAGTGATGTGGT 57.076 36.000 0.00 0.00 33.64 4.16
2146 2202 9.793259 AAATTACCCATATACTAAGTGATGTGG 57.207 33.333 0.00 0.00 34.88 4.17
2171 2227 8.896744 CCTTGACTCTGCAATAGATGAAATTAA 58.103 33.333 2.85 0.00 34.21 1.40
2172 2228 8.267183 TCCTTGACTCTGCAATAGATGAAATTA 58.733 33.333 2.85 0.00 34.21 1.40
2173 2229 7.114754 TCCTTGACTCTGCAATAGATGAAATT 58.885 34.615 2.85 0.00 34.21 1.82
2174 2230 6.656902 TCCTTGACTCTGCAATAGATGAAAT 58.343 36.000 2.85 0.00 34.21 2.17
2175 2231 6.053632 TCCTTGACTCTGCAATAGATGAAA 57.946 37.500 2.85 0.00 34.21 2.69
2176 2232 5.682234 TCCTTGACTCTGCAATAGATGAA 57.318 39.130 2.85 0.00 34.21 2.57
2177 2233 5.682234 TTCCTTGACTCTGCAATAGATGA 57.318 39.130 2.85 0.00 34.21 2.92
2178 2234 6.541278 TCAATTCCTTGACTCTGCAATAGATG 59.459 38.462 2.85 0.00 36.46 2.90
2179 2235 6.656902 TCAATTCCTTGACTCTGCAATAGAT 58.343 36.000 2.85 0.00 36.46 1.98
2180 2236 6.053632 TCAATTCCTTGACTCTGCAATAGA 57.946 37.500 2.85 0.00 36.46 1.98
2192 2248 7.719193 TCACTGTAAGAAATGTCAATTCCTTGA 59.281 33.333 0.00 0.00 36.80 3.02
2193 2249 7.874940 TCACTGTAAGAAATGTCAATTCCTTG 58.125 34.615 0.00 0.00 37.43 3.61
2194 2250 7.721399 ACTCACTGTAAGAAATGTCAATTCCTT 59.279 33.333 0.00 0.00 37.43 3.36
2195 2251 7.227156 ACTCACTGTAAGAAATGTCAATTCCT 58.773 34.615 0.00 0.00 37.43 3.36
2196 2252 7.440523 ACTCACTGTAAGAAATGTCAATTCC 57.559 36.000 0.00 0.00 37.43 3.01
2197 2253 7.805071 CCAACTCACTGTAAGAAATGTCAATTC 59.195 37.037 0.00 0.00 37.43 2.17
2198 2254 7.285401 ACCAACTCACTGTAAGAAATGTCAATT 59.715 33.333 0.00 0.00 37.43 2.32
2199 2255 6.772716 ACCAACTCACTGTAAGAAATGTCAAT 59.227 34.615 0.00 0.00 37.43 2.57
2200 2256 6.119536 ACCAACTCACTGTAAGAAATGTCAA 58.880 36.000 0.00 0.00 37.43 3.18
2201 2257 5.680619 ACCAACTCACTGTAAGAAATGTCA 58.319 37.500 0.00 0.00 37.43 3.58
2202 2258 6.430451 CAACCAACTCACTGTAAGAAATGTC 58.570 40.000 0.00 0.00 37.43 3.06
2203 2259 5.221048 GCAACCAACTCACTGTAAGAAATGT 60.221 40.000 0.00 0.00 37.43 2.71
2204 2260 5.215160 GCAACCAACTCACTGTAAGAAATG 58.785 41.667 0.00 0.00 37.43 2.32
2205 2261 4.024048 CGCAACCAACTCACTGTAAGAAAT 60.024 41.667 0.00 0.00 37.43 2.17
2206 2262 3.311322 CGCAACCAACTCACTGTAAGAAA 59.689 43.478 0.00 0.00 37.43 2.52
2207 2263 2.869801 CGCAACCAACTCACTGTAAGAA 59.130 45.455 0.00 0.00 37.43 2.52
2208 2264 2.159014 ACGCAACCAACTCACTGTAAGA 60.159 45.455 0.00 0.00 37.43 2.10
2209 2265 2.210116 ACGCAACCAACTCACTGTAAG 58.790 47.619 0.00 0.00 42.29 2.34
2210 2266 2.319136 ACGCAACCAACTCACTGTAA 57.681 45.000 0.00 0.00 0.00 2.41
2211 2267 2.206750 GAACGCAACCAACTCACTGTA 58.793 47.619 0.00 0.00 0.00 2.74
2212 2268 1.014352 GAACGCAACCAACTCACTGT 58.986 50.000 0.00 0.00 0.00 3.55
2213 2269 1.013596 TGAACGCAACCAACTCACTG 58.986 50.000 0.00 0.00 0.00 3.66
2214 2270 1.014352 GTGAACGCAACCAACTCACT 58.986 50.000 0.00 0.00 34.80 3.41
2215 2271 0.730265 TGTGAACGCAACCAACTCAC 59.270 50.000 0.00 0.00 37.50 3.51
2216 2272 1.601903 GATGTGAACGCAACCAACTCA 59.398 47.619 0.00 0.00 0.00 3.41
2217 2273 1.601903 TGATGTGAACGCAACCAACTC 59.398 47.619 0.00 0.00 0.00 3.01
2218 2274 1.603802 CTGATGTGAACGCAACCAACT 59.396 47.619 0.00 0.00 0.00 3.16
2219 2275 1.601903 TCTGATGTGAACGCAACCAAC 59.398 47.619 0.00 0.00 0.00 3.77
2220 2276 1.872952 CTCTGATGTGAACGCAACCAA 59.127 47.619 0.00 0.00 0.00 3.67
2221 2277 1.202639 ACTCTGATGTGAACGCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
2222 2278 1.461127 GACTCTGATGTGAACGCAACC 59.539 52.381 0.00 0.00 0.00 3.77
2223 2279 2.135139 TGACTCTGATGTGAACGCAAC 58.865 47.619 0.00 0.00 0.00 4.17
2224 2280 2.524569 TGACTCTGATGTGAACGCAA 57.475 45.000 0.00 0.00 0.00 4.85
2225 2281 2.524569 TTGACTCTGATGTGAACGCA 57.475 45.000 0.00 0.00 0.00 5.24
2226 2282 2.995939 TGATTGACTCTGATGTGAACGC 59.004 45.455 0.00 0.00 0.00 4.84
2227 2283 3.989817 TGTGATTGACTCTGATGTGAACG 59.010 43.478 0.00 0.00 0.00 3.95
2228 2284 4.993584 ACTGTGATTGACTCTGATGTGAAC 59.006 41.667 0.00 0.00 0.00 3.18
2229 2285 4.992951 CACTGTGATTGACTCTGATGTGAA 59.007 41.667 0.32 0.00 0.00 3.18
2230 2286 4.281688 TCACTGTGATTGACTCTGATGTGA 59.718 41.667 6.36 0.00 0.00 3.58
2231 2287 4.388165 GTCACTGTGATTGACTCTGATGTG 59.612 45.833 14.37 0.00 40.30 3.21
2232 2288 4.564041 GTCACTGTGATTGACTCTGATGT 58.436 43.478 14.37 0.00 40.30 3.06
2240 2296 5.700832 TGTGGATTTAGTCACTGTGATTGAC 59.299 40.000 14.37 1.36 43.24 3.18
2241 2297 5.863965 TGTGGATTTAGTCACTGTGATTGA 58.136 37.500 14.37 3.57 35.15 2.57
2242 2298 5.934043 TCTGTGGATTTAGTCACTGTGATTG 59.066 40.000 14.37 0.00 35.36 2.67
2243 2299 6.114187 TCTGTGGATTTAGTCACTGTGATT 57.886 37.500 14.37 12.40 35.36 2.57
2244 2300 5.337894 CCTCTGTGGATTTAGTCACTGTGAT 60.338 44.000 14.37 5.94 38.35 3.06
2245 2301 4.021104 CCTCTGTGGATTTAGTCACTGTGA 60.021 45.833 6.36 6.36 38.35 3.58
2246 2302 4.248859 CCTCTGTGGATTTAGTCACTGTG 58.751 47.826 0.17 0.17 38.35 3.66
2247 2303 3.307059 GCCTCTGTGGATTTAGTCACTGT 60.307 47.826 0.00 0.00 38.35 3.55
2248 2304 3.265791 GCCTCTGTGGATTTAGTCACTG 58.734 50.000 0.00 0.00 38.35 3.66
2249 2305 2.906389 TGCCTCTGTGGATTTAGTCACT 59.094 45.455 0.00 0.00 38.35 3.41
2250 2306 3.334583 TGCCTCTGTGGATTTAGTCAC 57.665 47.619 0.00 0.00 38.35 3.67
2251 2307 4.072131 GTTTGCCTCTGTGGATTTAGTCA 58.928 43.478 0.00 0.00 38.35 3.41
2252 2308 4.072131 TGTTTGCCTCTGTGGATTTAGTC 58.928 43.478 0.00 0.00 38.35 2.59
2253 2309 4.098914 TGTTTGCCTCTGTGGATTTAGT 57.901 40.909 0.00 0.00 38.35 2.24
2254 2310 5.644644 GAATGTTTGCCTCTGTGGATTTAG 58.355 41.667 0.00 0.00 38.35 1.85
2255 2311 4.155826 CGAATGTTTGCCTCTGTGGATTTA 59.844 41.667 0.00 0.00 38.35 1.40
2256 2312 3.057315 CGAATGTTTGCCTCTGTGGATTT 60.057 43.478 0.00 0.00 38.35 2.17
2257 2313 2.489329 CGAATGTTTGCCTCTGTGGATT 59.511 45.455 0.00 0.00 38.35 3.01
2258 2314 2.086869 CGAATGTTTGCCTCTGTGGAT 58.913 47.619 0.00 0.00 38.35 3.41
2259 2315 1.071542 TCGAATGTTTGCCTCTGTGGA 59.928 47.619 0.00 0.00 38.35 4.02
2260 2316 1.522668 TCGAATGTTTGCCTCTGTGG 58.477 50.000 0.00 0.00 39.35 4.17
2261 2317 3.837213 AATCGAATGTTTGCCTCTGTG 57.163 42.857 0.00 0.00 0.00 3.66
2262 2318 6.515272 AATAAATCGAATGTTTGCCTCTGT 57.485 33.333 0.00 0.00 0.00 3.41
2263 2319 8.909708 TTAAATAAATCGAATGTTTGCCTCTG 57.090 30.769 0.00 0.00 0.00 3.35
2264 2320 8.956426 TCTTAAATAAATCGAATGTTTGCCTCT 58.044 29.630 0.00 0.00 0.00 3.69
2265 2321 9.567848 TTCTTAAATAAATCGAATGTTTGCCTC 57.432 29.630 0.00 0.00 0.00 4.70
2266 2322 9.921637 TTTCTTAAATAAATCGAATGTTTGCCT 57.078 25.926 0.00 0.00 0.00 4.75
2272 2328 9.774742 GCAGACTTTCTTAAATAAATCGAATGT 57.225 29.630 0.00 0.00 0.00 2.71
2273 2329 9.773328 TGCAGACTTTCTTAAATAAATCGAATG 57.227 29.630 0.00 0.00 0.00 2.67
2274 2330 9.774742 GTGCAGACTTTCTTAAATAAATCGAAT 57.225 29.630 0.00 0.00 0.00 3.34
2275 2331 8.234546 GGTGCAGACTTTCTTAAATAAATCGAA 58.765 33.333 0.00 0.00 0.00 3.71
2276 2332 7.606456 AGGTGCAGACTTTCTTAAATAAATCGA 59.394 33.333 0.00 0.00 0.00 3.59
2277 2333 7.752695 AGGTGCAGACTTTCTTAAATAAATCG 58.247 34.615 0.00 0.00 0.00 3.34
2278 2334 8.951243 AGAGGTGCAGACTTTCTTAAATAAATC 58.049 33.333 0.00 0.00 0.00 2.17
2279 2335 8.870075 AGAGGTGCAGACTTTCTTAAATAAAT 57.130 30.769 0.00 0.00 0.00 1.40
2280 2336 8.691661 AAGAGGTGCAGACTTTCTTAAATAAA 57.308 30.769 0.00 0.00 29.71 1.40
2281 2337 9.216117 GTAAGAGGTGCAGACTTTCTTAAATAA 57.784 33.333 5.51 0.00 33.74 1.40
2282 2338 8.372459 TGTAAGAGGTGCAGACTTTCTTAAATA 58.628 33.333 5.51 0.00 33.74 1.40
2283 2339 7.224297 TGTAAGAGGTGCAGACTTTCTTAAAT 58.776 34.615 5.51 0.00 33.74 1.40
2284 2340 6.588204 TGTAAGAGGTGCAGACTTTCTTAAA 58.412 36.000 5.51 0.25 33.74 1.52
2285 2341 6.169557 TGTAAGAGGTGCAGACTTTCTTAA 57.830 37.500 5.51 0.00 33.74 1.85
2286 2342 5.801531 TGTAAGAGGTGCAGACTTTCTTA 57.198 39.130 5.51 4.06 32.17 2.10
2287 2343 4.689612 TGTAAGAGGTGCAGACTTTCTT 57.310 40.909 5.51 4.85 33.47 2.52
2288 2344 4.381411 GTTGTAAGAGGTGCAGACTTTCT 58.619 43.478 5.51 0.00 0.00 2.52
2289 2345 3.498777 GGTTGTAAGAGGTGCAGACTTTC 59.501 47.826 5.51 2.47 0.00 2.62
2290 2346 3.118038 TGGTTGTAAGAGGTGCAGACTTT 60.118 43.478 5.51 0.00 0.00 2.66
2291 2347 2.438021 TGGTTGTAAGAGGTGCAGACTT 59.562 45.455 0.00 0.00 0.00 3.01
2292 2348 2.047061 TGGTTGTAAGAGGTGCAGACT 58.953 47.619 0.00 0.00 0.00 3.24
2293 2349 2.543777 TGGTTGTAAGAGGTGCAGAC 57.456 50.000 0.00 0.00 0.00 3.51
2294 2350 3.569194 TTTGGTTGTAAGAGGTGCAGA 57.431 42.857 0.00 0.00 0.00 4.26
2295 2351 4.853924 ATTTTGGTTGTAAGAGGTGCAG 57.146 40.909 0.00 0.00 0.00 4.41
2296 2352 6.065374 TCTTATTTTGGTTGTAAGAGGTGCA 58.935 36.000 0.00 0.00 32.38 4.57
2297 2353 6.569179 TCTTATTTTGGTTGTAAGAGGTGC 57.431 37.500 0.00 0.00 32.38 5.01
2298 2354 6.349363 GGCTCTTATTTTGGTTGTAAGAGGTG 60.349 42.308 17.93 1.15 45.80 4.00
2299 2355 5.710567 GGCTCTTATTTTGGTTGTAAGAGGT 59.289 40.000 17.93 0.00 45.80 3.85
2300 2356 5.710099 TGGCTCTTATTTTGGTTGTAAGAGG 59.290 40.000 17.93 5.53 45.80 3.69
2302 2358 9.120538 GATATGGCTCTTATTTTGGTTGTAAGA 57.879 33.333 0.00 0.00 34.36 2.10
2303 2359 9.125026 AGATATGGCTCTTATTTTGGTTGTAAG 57.875 33.333 0.00 0.00 0.00 2.34
2304 2360 9.120538 GAGATATGGCTCTTATTTTGGTTGTAA 57.879 33.333 0.00 0.00 32.16 2.41
2305 2361 8.271458 TGAGATATGGCTCTTATTTTGGTTGTA 58.729 33.333 0.00 0.00 35.91 2.41
2306 2362 7.067494 GTGAGATATGGCTCTTATTTTGGTTGT 59.933 37.037 0.00 0.00 35.91 3.32
2307 2363 7.067372 TGTGAGATATGGCTCTTATTTTGGTTG 59.933 37.037 0.00 0.00 35.91 3.77
2308 2364 7.118723 TGTGAGATATGGCTCTTATTTTGGTT 58.881 34.615 0.00 0.00 35.91 3.67
2309 2365 6.662755 TGTGAGATATGGCTCTTATTTTGGT 58.337 36.000 0.00 0.00 35.91 3.67
2310 2366 7.446319 TGATGTGAGATATGGCTCTTATTTTGG 59.554 37.037 0.00 0.00 35.91 3.28
2311 2367 8.387190 TGATGTGAGATATGGCTCTTATTTTG 57.613 34.615 0.00 0.00 35.91 2.44
2313 2369 9.887629 CTATGATGTGAGATATGGCTCTTATTT 57.112 33.333 0.00 0.00 35.91 1.40
2314 2370 9.264653 TCTATGATGTGAGATATGGCTCTTATT 57.735 33.333 0.00 0.00 35.91 1.40
2315 2371 8.835550 TCTATGATGTGAGATATGGCTCTTAT 57.164 34.615 0.00 0.00 35.91 1.73
2316 2372 8.835550 ATCTATGATGTGAGATATGGCTCTTA 57.164 34.615 0.00 0.00 35.91 2.10
2317 2373 7.736881 ATCTATGATGTGAGATATGGCTCTT 57.263 36.000 0.00 0.00 35.91 2.85
2318 2374 7.838193 TGTATCTATGATGTGAGATATGGCTCT 59.162 37.037 0.00 0.00 37.10 4.09
2319 2375 7.920151 GTGTATCTATGATGTGAGATATGGCTC 59.080 40.741 0.00 0.00 37.10 4.70
2320 2376 7.398332 TGTGTATCTATGATGTGAGATATGGCT 59.602 37.037 0.00 0.00 37.10 4.75
2321 2377 7.550712 TGTGTATCTATGATGTGAGATATGGC 58.449 38.462 0.00 0.00 37.10 4.40
2342 2398 9.941325 TTGCAAAATATTCCATTTTCTATGTGT 57.059 25.926 0.00 0.00 0.00 3.72
2347 2403 9.316730 GCATCTTGCAAAATATTCCATTTTCTA 57.683 29.630 0.00 0.00 44.26 2.10
2348 2404 8.205131 GCATCTTGCAAAATATTCCATTTTCT 57.795 30.769 0.00 0.00 44.26 2.52
2365 2421 2.162681 ACAAACTACCCAGCATCTTGC 58.837 47.619 0.00 0.00 45.46 4.01
2366 2422 5.957842 TTAACAAACTACCCAGCATCTTG 57.042 39.130 0.00 0.00 0.00 3.02
2367 2423 8.823220 ATATTTAACAAACTACCCAGCATCTT 57.177 30.769 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.