Multiple sequence alignment - TraesCS1D01G382200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G382200 chr1D 100.000 3099 0 0 1 3099 457248579 457245481 0.000000e+00 5723
1 TraesCS1D01G382200 chr1A 90.551 2794 137 45 400 3098 549933679 549930918 0.000000e+00 3579
2 TraesCS1D01G382200 chr1A 89.362 282 6 11 1 281 549934050 549933792 1.780000e-87 333
3 TraesCS1D01G382200 chr1A 95.181 83 4 0 320 402 549933792 549933710 6.970000e-27 132
4 TraesCS1D01G382200 chr1B 87.060 2844 142 100 402 3099 626855722 626852959 0.000000e+00 3005
5 TraesCS1D01G382200 chr1B 91.176 408 24 8 1 402 626856156 626855755 7.560000e-151 544


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G382200 chr1D 457245481 457248579 3098 True 5723.0 5723 100.000 1 3099 1 chr1D.!!$R1 3098
1 TraesCS1D01G382200 chr1A 549930918 549934050 3132 True 1348.0 3579 91.698 1 3098 3 chr1A.!!$R1 3097
2 TraesCS1D01G382200 chr1B 626852959 626856156 3197 True 1774.5 3005 89.118 1 3099 2 chr1B.!!$R1 3098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 701 0.108186 CACGCCAGCTTCACATCCTA 60.108 55.0 0.0 0.0 0.00 2.94 F
743 807 0.108992 TGATACGACGACAAGTGGGC 60.109 55.0 0.0 0.0 32.45 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2134 0.106819 GGAGGTGATGCCATGAGCTT 60.107 55.0 0.0 0.0 44.23 3.74 R
2478 2671 0.342313 AACCCTACCCTACCCAGAGG 59.658 60.0 0.0 0.0 40.04 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 2.118513 AGGCGGCCGGAGATAGAT 59.881 61.111 29.38 0.00 0.00 1.98
70 72 0.109689 GGCCGGAGATAGATCGAACG 60.110 60.000 5.05 0.00 0.00 3.95
71 73 0.873054 GCCGGAGATAGATCGAACGA 59.127 55.000 5.05 0.00 0.00 3.85
72 74 1.266175 GCCGGAGATAGATCGAACGAA 59.734 52.381 5.05 0.00 0.00 3.85
81 83 3.947910 AGATCGAACGAACCAGGTTTA 57.052 42.857 6.21 0.00 0.00 2.01
82 84 3.582780 AGATCGAACGAACCAGGTTTAC 58.417 45.455 6.21 0.00 0.00 2.01
151 164 3.716006 CACGGCAGGTTCACGCAG 61.716 66.667 0.00 0.00 0.00 5.18
154 167 2.047274 GGCAGGTTCACGCAGCTA 60.047 61.111 0.00 0.00 0.00 3.32
155 168 2.103042 GGCAGGTTCACGCAGCTAG 61.103 63.158 0.00 0.00 0.00 3.42
156 169 2.744768 GCAGGTTCACGCAGCTAGC 61.745 63.158 6.62 6.62 40.87 3.42
179 192 2.877691 GAATCTTGGGTGCGGTGC 59.122 61.111 0.00 0.00 0.00 5.01
180 193 3.039202 GAATCTTGGGTGCGGTGCG 62.039 63.158 0.00 0.00 0.00 5.34
284 303 3.270877 TCCCGCTGCTCTTTCTTTAATC 58.729 45.455 0.00 0.00 0.00 1.75
287 306 4.096984 CCCGCTGCTCTTTCTTTAATCAAT 59.903 41.667 0.00 0.00 0.00 2.57
289 308 6.183360 CCCGCTGCTCTTTCTTTAATCAATTA 60.183 38.462 0.00 0.00 0.00 1.40
290 309 7.420800 CCGCTGCTCTTTCTTTAATCAATTAT 58.579 34.615 0.00 0.00 0.00 1.28
318 342 0.597377 CGGTTTTGGGCAGCAGTTTC 60.597 55.000 0.00 0.00 0.00 2.78
378 402 4.082523 CGCACCCCGACCACATCT 62.083 66.667 0.00 0.00 40.02 2.90
483 546 1.004918 AGACACAAGGCCGTACAGC 60.005 57.895 0.00 0.00 0.00 4.40
564 627 4.778143 GCGCCCTGTACCCCTGTG 62.778 72.222 0.00 0.00 0.00 3.66
565 628 4.778143 CGCCCTGTACCCCTGTGC 62.778 72.222 0.00 0.00 0.00 4.57
566 629 4.778143 GCCCTGTACCCCTGTGCG 62.778 72.222 0.00 0.00 0.00 5.34
637 701 0.108186 CACGCCAGCTTCACATCCTA 60.108 55.000 0.00 0.00 0.00 2.94
638 702 0.833287 ACGCCAGCTTCACATCCTAT 59.167 50.000 0.00 0.00 0.00 2.57
740 804 4.966249 TCTAAGTGATACGACGACAAGTG 58.034 43.478 0.00 0.00 0.00 3.16
741 805 2.631418 AGTGATACGACGACAAGTGG 57.369 50.000 0.00 0.00 34.52 4.00
742 806 1.201647 AGTGATACGACGACAAGTGGG 59.798 52.381 0.00 0.00 32.45 4.61
743 807 0.108992 TGATACGACGACAAGTGGGC 60.109 55.000 0.00 0.00 32.45 5.36
744 808 0.804933 GATACGACGACAAGTGGGCC 60.805 60.000 0.00 0.00 32.45 5.80
745 809 2.552585 ATACGACGACAAGTGGGCCG 62.553 60.000 0.00 0.00 32.45 6.13
746 810 4.657824 CGACGACAAGTGGGCCGT 62.658 66.667 0.00 0.00 38.01 5.68
747 811 2.737376 GACGACAAGTGGGCCGTC 60.737 66.667 0.00 0.00 43.28 4.79
752 816 4.728102 CAAGTGGGCCGTCGCGTA 62.728 66.667 5.77 0.00 35.02 4.42
753 817 4.729856 AAGTGGGCCGTCGCGTAC 62.730 66.667 5.77 1.94 35.02 3.67
792 873 1.206072 CAGCGAGCTTGCACAGAAC 59.794 57.895 27.59 0.00 37.31 3.01
844 929 3.047796 CAGTGATTGTATACGTACGGCC 58.952 50.000 21.06 4.57 33.36 6.13
958 1053 3.681835 AAACGCGAGCGAGACCCT 61.682 61.111 24.72 0.00 42.83 4.34
982 1080 4.332543 AAGACCTCCTCCGCCCCA 62.333 66.667 0.00 0.00 0.00 4.96
996 1094 2.333462 CCCCACCTCCCTCCTCCTA 61.333 68.421 0.00 0.00 0.00 2.94
1362 1475 3.378399 GAAGGAGCCCGAGCCAGAC 62.378 68.421 0.00 0.00 41.25 3.51
1410 1532 2.432628 CCGCCACAGGAGAACGTC 60.433 66.667 0.00 0.00 0.00 4.34
1437 1559 4.697756 CCGTGGAAGCTGCGGGAA 62.698 66.667 10.29 0.00 41.60 3.97
1663 1785 1.296002 GAATTCCCCACACTACCCCT 58.704 55.000 0.00 0.00 0.00 4.79
1671 1793 0.693049 CACACTACCCCTGCCTTTCT 59.307 55.000 0.00 0.00 0.00 2.52
1685 1807 5.355350 CCTGCCTTTCTCAACCATTTAGTAG 59.645 44.000 0.00 0.00 0.00 2.57
1689 1811 6.315642 GCCTTTCTCAACCATTTAGTAGTACC 59.684 42.308 0.00 0.00 0.00 3.34
1695 1817 9.038072 TCTCAACCATTTAGTAGTACCAATACA 57.962 33.333 0.00 0.00 33.30 2.29
1696 1818 9.832445 CTCAACCATTTAGTAGTACCAATACAT 57.168 33.333 0.00 0.00 33.30 2.29
1830 1958 2.091830 TGGTACACTCATCCTCCGATCT 60.092 50.000 0.00 0.00 0.00 2.75
1964 2131 0.518636 CGACTACAAGGTTCCGACGA 59.481 55.000 0.00 0.00 0.00 4.20
1965 2132 1.727213 CGACTACAAGGTTCCGACGAC 60.727 57.143 0.00 0.00 0.00 4.34
1966 2133 0.239347 ACTACAAGGTTCCGACGACG 59.761 55.000 0.00 0.00 39.43 5.12
1967 2134 0.518636 CTACAAGGTTCCGACGACGA 59.481 55.000 9.28 0.00 42.66 4.20
1968 2135 0.950836 TACAAGGTTCCGACGACGAA 59.049 50.000 9.28 0.00 42.66 3.85
1969 2136 0.318445 ACAAGGTTCCGACGACGAAG 60.318 55.000 9.28 0.00 42.66 3.79
1970 2137 1.372623 AAGGTTCCGACGACGAAGC 60.373 57.895 9.28 10.53 42.66 3.86
1971 2138 1.803366 AAGGTTCCGACGACGAAGCT 61.803 55.000 9.28 12.47 42.66 3.74
1972 2139 1.800713 GGTTCCGACGACGAAGCTC 60.801 63.158 9.28 0.00 42.66 4.09
1973 2140 1.081641 GTTCCGACGACGAAGCTCA 60.082 57.895 9.28 0.00 42.66 4.26
1974 2141 0.456312 GTTCCGACGACGAAGCTCAT 60.456 55.000 9.28 0.00 42.66 2.90
1975 2142 0.456142 TTCCGACGACGAAGCTCATG 60.456 55.000 9.28 0.00 42.66 3.07
1976 2143 1.874019 CCGACGACGAAGCTCATGG 60.874 63.158 9.28 0.00 42.66 3.66
1977 2144 2.508891 CGACGACGAAGCTCATGGC 61.509 63.158 0.00 0.00 42.66 4.40
1978 2145 1.446099 GACGACGAAGCTCATGGCA 60.446 57.895 0.00 0.00 44.79 4.92
1979 2146 0.807667 GACGACGAAGCTCATGGCAT 60.808 55.000 0.00 0.00 44.79 4.40
1980 2147 0.807667 ACGACGAAGCTCATGGCATC 60.808 55.000 0.00 5.42 44.79 3.91
1981 2148 0.807275 CGACGAAGCTCATGGCATCA 60.807 55.000 0.00 0.00 44.79 3.07
1982 2149 0.654683 GACGAAGCTCATGGCATCAC 59.345 55.000 0.00 0.00 44.79 3.06
1983 2150 0.745845 ACGAAGCTCATGGCATCACC 60.746 55.000 0.00 0.00 44.79 4.02
1984 2151 0.463295 CGAAGCTCATGGCATCACCT 60.463 55.000 0.00 0.00 44.79 4.00
1985 2152 1.307097 GAAGCTCATGGCATCACCTC 58.693 55.000 0.00 0.00 44.79 3.85
1986 2153 0.106819 AAGCTCATGGCATCACCTCC 60.107 55.000 0.00 0.00 44.79 4.30
1987 2154 1.890979 GCTCATGGCATCACCTCCG 60.891 63.158 0.00 0.00 41.35 4.63
2097 2264 7.380536 TGTACTCGTGTTCACCAGTTATTATT 58.619 34.615 8.30 0.00 0.00 1.40
2162 2329 0.953727 TGTCACATGCTGTTTCTGCC 59.046 50.000 0.00 0.00 0.00 4.85
2206 2373 3.179830 GTCGTACAATCTACTGCTGGTG 58.820 50.000 0.00 0.00 0.00 4.17
2284 2464 0.173708 GCTACTCGGTCAGTCTTGGG 59.826 60.000 0.00 0.00 36.43 4.12
2291 2471 2.203788 TCAGTCTTGGGCTCGGGT 60.204 61.111 0.00 0.00 0.00 5.28
2421 2610 2.951458 GTTGCGTTTTCTCGGGGG 59.049 61.111 0.00 0.00 0.00 5.40
2422 2611 2.981350 TTGCGTTTTCTCGGGGGC 60.981 61.111 0.00 0.00 0.00 5.80
2423 2612 3.485346 TTGCGTTTTCTCGGGGGCT 62.485 57.895 0.00 0.00 0.00 5.19
2424 2613 3.431725 GCGTTTTCTCGGGGGCTG 61.432 66.667 0.00 0.00 0.00 4.85
2425 2614 2.746277 CGTTTTCTCGGGGGCTGG 60.746 66.667 0.00 0.00 0.00 4.85
2426 2615 3.062466 GTTTTCTCGGGGGCTGGC 61.062 66.667 0.00 0.00 0.00 4.85
2427 2616 3.256960 TTTTCTCGGGGGCTGGCT 61.257 61.111 0.00 0.00 0.00 4.75
2428 2617 3.567579 TTTTCTCGGGGGCTGGCTG 62.568 63.158 0.00 0.00 0.00 4.85
2469 2662 1.301874 TCGGGCGTTTTGGATTCGT 60.302 52.632 0.00 0.00 0.00 3.85
2473 2666 1.063412 GGCGTTTTGGATTCGTTCGC 61.063 55.000 0.00 0.00 41.13 4.70
2478 2671 1.065358 TTTGGATTCGTTCGCTCGTC 58.935 50.000 0.00 0.00 0.00 4.20
2737 2957 0.798776 GCATGGAAGGAAGTGTCACG 59.201 55.000 0.00 0.00 0.00 4.35
3038 3315 3.169908 GGGGAGTTTAAGGGCAAATCAA 58.830 45.455 0.00 0.00 0.00 2.57
3056 3333 3.716006 CCACTTGCGCACGACAGG 61.716 66.667 21.81 14.54 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.810030 GGATCCTCAACGACCACGC 60.810 63.158 3.84 0.00 43.96 5.34
64 66 1.336440 TCGTAAACCTGGTTCGTTCGA 59.664 47.619 13.36 16.01 0.00 3.71
70 72 1.055338 CGTCGTCGTAAACCTGGTTC 58.945 55.000 13.36 0.00 0.00 3.62
71 73 0.318955 CCGTCGTCGTAAACCTGGTT 60.319 55.000 6.18 6.18 35.01 3.67
72 74 1.286880 CCGTCGTCGTAAACCTGGT 59.713 57.895 0.00 0.00 35.01 4.00
138 151 2.744768 GCTAGCTGCGTGAACCTGC 61.745 63.158 7.70 0.00 0.00 4.85
139 152 3.479370 GCTAGCTGCGTGAACCTG 58.521 61.111 7.70 0.00 0.00 4.00
152 165 0.598680 CCCAAGATTCGCTCCGCTAG 60.599 60.000 0.00 0.00 0.00 3.42
153 166 1.327690 ACCCAAGATTCGCTCCGCTA 61.328 55.000 0.00 0.00 0.00 4.26
154 167 2.187946 CCCAAGATTCGCTCCGCT 59.812 61.111 0.00 0.00 0.00 5.52
155 168 2.125106 ACCCAAGATTCGCTCCGC 60.125 61.111 0.00 0.00 0.00 5.54
156 169 2.464459 GCACCCAAGATTCGCTCCG 61.464 63.158 0.00 0.00 0.00 4.63
157 170 2.464459 CGCACCCAAGATTCGCTCC 61.464 63.158 0.00 0.00 0.00 4.70
161 174 3.039202 GCACCGCACCCAAGATTCG 62.039 63.158 0.00 0.00 0.00 3.34
299 318 0.597377 GAAACTGCTGCCCAAAACCG 60.597 55.000 0.00 0.00 0.00 4.44
300 319 0.752658 AGAAACTGCTGCCCAAAACC 59.247 50.000 0.00 0.00 0.00 3.27
318 342 3.039202 GCCGTGCATTTGACCGGAG 62.039 63.158 9.46 0.00 43.01 4.63
366 390 1.068281 CAGAGATCAGATGTGGTCGGG 59.932 57.143 0.00 0.00 39.02 5.14
374 398 2.749776 CTGCTGCTCAGAGATCAGATG 58.250 52.381 0.00 0.00 45.72 2.90
378 402 1.262640 TGGCTGCTGCTCAGAGATCA 61.263 55.000 15.64 0.00 45.72 2.92
718 782 4.142752 CCACTTGTCGTCGTATCACTTAGA 60.143 45.833 0.00 0.00 0.00 2.10
740 804 3.204827 TAGAGTACGCGACGGCCC 61.205 66.667 15.93 0.00 35.02 5.80
741 805 2.023882 GTAGAGTACGCGACGGCC 59.976 66.667 15.93 0.00 35.02 6.13
742 806 2.350537 CGTAGAGTACGCGACGGC 60.351 66.667 21.04 4.91 45.81 5.68
750 814 1.750399 TGGGACCGCCGTAGAGTAC 60.750 63.158 0.00 0.00 33.83 2.73
751 815 1.750399 GTGGGACCGCCGTAGAGTA 60.750 63.158 0.00 0.00 33.83 2.59
752 816 3.066814 GTGGGACCGCCGTAGAGT 61.067 66.667 0.00 0.00 33.83 3.24
753 817 4.189188 CGTGGGACCGCCGTAGAG 62.189 72.222 0.00 0.00 33.83 2.43
958 1053 1.544825 CGGAGGAGGTCTTGAGGCAA 61.545 60.000 0.00 0.00 0.00 4.52
982 1080 1.647334 CCGAGTAGGAGGAGGGAGGT 61.647 65.000 0.00 0.00 45.00 3.85
1127 1237 2.918802 ACTCAACGCGGTGGGGTA 60.919 61.111 30.38 5.95 38.54 3.69
1220 1330 4.609247 CGATCCCGCCGTCGTCTC 62.609 72.222 0.00 0.00 33.42 3.36
1336 1449 4.035102 GGGCTCCTTCGGCTTGGT 62.035 66.667 0.00 0.00 0.00 3.67
1395 1517 3.112709 GCGACGTTCTCCTGTGGC 61.113 66.667 0.00 0.00 32.81 5.01
1398 1520 2.981909 TCCGCGACGTTCTCCTGT 60.982 61.111 8.23 0.00 0.00 4.00
1403 1525 2.733593 GCTTGTCCGCGACGTTCT 60.734 61.111 8.23 0.00 34.95 3.01
1663 1785 5.876357 ACTACTAAATGGTTGAGAAAGGCA 58.124 37.500 0.00 0.00 0.00 4.75
1685 1807 9.931210 GCAATTCAGTAACTTATGTATTGGTAC 57.069 33.333 6.65 0.00 35.77 3.34
1689 1811 7.285401 AGGGGCAATTCAGTAACTTATGTATTG 59.715 37.037 0.00 0.00 37.30 1.90
1693 1815 5.193099 AGGGGCAATTCAGTAACTTATGT 57.807 39.130 0.00 0.00 0.00 2.29
1695 1817 4.956075 CCAAGGGGCAATTCAGTAACTTAT 59.044 41.667 0.00 0.00 0.00 1.73
1696 1818 4.340617 CCAAGGGGCAATTCAGTAACTTA 58.659 43.478 0.00 0.00 0.00 2.24
1949 2104 0.950836 TTCGTCGTCGGAACCTTGTA 59.049 50.000 1.55 0.00 37.69 2.41
1952 2107 1.372623 GCTTCGTCGTCGGAACCTT 60.373 57.895 1.55 0.00 37.69 3.50
1964 2131 0.745845 GGTGATGCCATGAGCTTCGT 60.746 55.000 13.50 0.00 46.18 3.85
1965 2132 0.463295 AGGTGATGCCATGAGCTTCG 60.463 55.000 13.50 0.00 46.18 3.79
1966 2133 1.307097 GAGGTGATGCCATGAGCTTC 58.693 55.000 0.00 12.27 44.08 3.86
1967 2134 0.106819 GGAGGTGATGCCATGAGCTT 60.107 55.000 0.00 0.00 44.23 3.74
1968 2135 1.530771 GGAGGTGATGCCATGAGCT 59.469 57.895 0.00 0.00 44.23 4.09
1969 2136 1.890979 CGGAGGTGATGCCATGAGC 60.891 63.158 0.00 0.00 40.61 4.26
1970 2137 1.890979 GCGGAGGTGATGCCATGAG 60.891 63.158 0.00 0.00 40.61 2.90
1971 2138 2.190313 GCGGAGGTGATGCCATGA 59.810 61.111 0.00 0.00 40.61 3.07
1972 2139 3.274586 CGCGGAGGTGATGCCATG 61.275 66.667 0.00 0.00 40.61 3.66
1987 2154 2.643764 CTACCTGTCCTACGACGCGC 62.644 65.000 5.73 0.00 42.37 6.86
1995 2162 2.170012 AATTCGGGCTACCTGTCCTA 57.830 50.000 0.00 0.00 38.58 2.94
2162 2329 1.226046 CGACTGTACAGACGGCGAG 60.226 63.158 31.23 10.43 41.49 5.03
2206 2373 8.953313 ACAAGTATAAATTGGCAAGTAAGTACC 58.047 33.333 5.96 0.00 31.76 3.34
2346 2533 0.820891 CCGAAAGCCATCCATCCCTG 60.821 60.000 0.00 0.00 0.00 4.45
2469 2662 1.001764 TACCCAGAGGACGAGCGAA 60.002 57.895 0.00 0.00 36.73 4.70
2473 2666 0.549950 TACCCTACCCAGAGGACGAG 59.450 60.000 0.00 0.00 39.15 4.18
2478 2671 0.342313 AACCCTACCCTACCCAGAGG 59.658 60.000 0.00 0.00 40.04 3.69
2600 2800 2.171489 AAAAGTTCGCGCGCCTCTTC 62.171 55.000 27.95 11.68 0.00 2.87
2601 2801 2.171489 GAAAAGTTCGCGCGCCTCTT 62.171 55.000 27.95 23.65 0.00 2.85
2602 2802 2.665185 AAAAGTTCGCGCGCCTCT 60.665 55.556 27.95 19.25 0.00 3.69
2603 2803 2.202184 GAAAAGTTCGCGCGCCTC 60.202 61.111 27.95 17.21 0.00 4.70
2604 2804 4.072088 CGAAAAGTTCGCGCGCCT 62.072 61.111 27.95 20.40 46.97 5.52
2737 2957 1.092348 GTCCCGGCCACAGAATTTAC 58.908 55.000 2.24 0.00 0.00 2.01
2787 3010 1.499049 AGGAAAACGAAGAGCACGTC 58.501 50.000 0.00 0.00 43.16 4.34
2792 3015 2.423577 TGGCTAAGGAAAACGAAGAGC 58.576 47.619 0.00 0.00 0.00 4.09
2878 3141 3.289834 TACGAGGCCGCCCGTATC 61.290 66.667 21.87 7.49 39.86 2.24
2905 3168 0.669625 GTGGTTCGCCTCCAGTGTAC 60.670 60.000 0.00 0.00 38.36 2.90
2911 3174 4.351938 CGACGTGGTTCGCCTCCA 62.352 66.667 0.00 0.00 44.19 3.86
3038 3315 2.967076 CTGTCGTGCGCAAGTGGT 60.967 61.111 22.49 0.00 41.68 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.