Multiple sequence alignment - TraesCS1D01G381700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G381700 chr1D 100.000 4175 0 0 1 4175 457047516 457051690 0.000000e+00 7710.0
1 TraesCS1D01G381700 chr1D 94.634 615 32 1 3561 4175 487901079 487901692 0.000000e+00 952.0
2 TraesCS1D01G381700 chr1A 96.082 3012 85 9 367 3364 549701889 549704881 0.000000e+00 4878.0
3 TraesCS1D01G381700 chr1A 93.000 100 6 1 3353 3451 6047760 6047661 1.210000e-30 145.0
4 TraesCS1D01G381700 chr1A 92.857 98 7 0 3352 3449 548772388 548772291 4.350000e-30 143.0
5 TraesCS1D01G381700 chr1B 96.825 1575 47 3 932 2505 626656502 626658074 0.000000e+00 2628.0
6 TraesCS1D01G381700 chr1B 94.767 879 40 4 2489 3362 626666432 626667309 0.000000e+00 1363.0
7 TraesCS1D01G381700 chr1B 91.949 944 33 12 1 928 626651114 626652030 0.000000e+00 1282.0
8 TraesCS1D01G381700 chr7D 95.772 615 26 0 3559 4173 501110675 501110061 0.000000e+00 992.0
9 TraesCS1D01G381700 chr7D 95.455 616 28 0 3560 4175 260977 261592 0.000000e+00 983.0
10 TraesCS1D01G381700 chr7D 94.660 618 31 1 3560 4175 185760501 185759884 0.000000e+00 957.0
11 TraesCS1D01G381700 chr7D 88.204 373 29 11 3 364 613764163 613763795 8.290000e-117 431.0
12 TraesCS1D01G381700 chr7D 87.234 376 36 7 1 364 33422769 33422394 6.460000e-113 418.0
13 TraesCS1D01G381700 chr2D 94.976 617 31 0 3559 4175 171443024 171443640 0.000000e+00 968.0
14 TraesCS1D01G381700 chr3D 94.780 613 32 0 3563 4175 535578189 535577577 0.000000e+00 955.0
15 TraesCS1D01G381700 chr3D 94.634 615 33 0 3561 4175 120626123 120626737 0.000000e+00 953.0
16 TraesCS1D01G381700 chr3D 94.634 615 31 1 3561 4175 553039006 553039618 0.000000e+00 952.0
17 TraesCS1D01G381700 chr5A 94.634 615 33 0 3561 4175 290927813 290927199 0.000000e+00 953.0
18 TraesCS1D01G381700 chr6B 84.738 439 61 4 2731 3169 33712248 33711816 6.410000e-118 435.0
19 TraesCS1D01G381700 chr6B 88.571 350 32 4 23 364 612846499 612846150 6.460000e-113 418.0
20 TraesCS1D01G381700 chr6B 84.474 380 39 12 1 364 616327703 616327328 1.430000e-94 357.0
21 TraesCS1D01G381700 chr6B 82.738 336 51 5 2891 3220 35544531 35544865 4.080000e-75 292.0
22 TraesCS1D01G381700 chr6B 82.738 336 51 5 2891 3220 35558295 35558629 4.080000e-75 292.0
23 TraesCS1D01G381700 chr2B 87.429 350 29 9 23 364 666727908 666727566 5.060000e-104 388.0
24 TraesCS1D01G381700 chr2B 77.444 133 20 7 2541 2664 548948037 548948168 2.080000e-08 71.3
25 TraesCS1D01G381700 chr6D 85.676 377 36 12 1 364 409869262 409868891 8.470000e-102 381.0
26 TraesCS1D01G381700 chr7B 84.697 379 39 11 1 364 705331456 705331082 1.100000e-95 361.0
27 TraesCS1D01G381700 chr7B 94.845 97 5 0 3354 3450 414571374 414571470 7.230000e-33 152.0
28 TraesCS1D01G381700 chr4D 85.135 370 34 16 1 364 82242193 82242547 3.970000e-95 359.0
29 TraesCS1D01G381700 chr4D 94.737 95 4 1 3356 3449 102386995 102387089 3.360000e-31 147.0
30 TraesCS1D01G381700 chr4D 82.927 82 14 0 2627 2708 29801759 29801840 1.610000e-09 75.0
31 TraesCS1D01G381700 chr7A 93.814 97 6 0 3353 3449 579199552 579199456 3.360000e-31 147.0
32 TraesCS1D01G381700 chr5B 93.069 101 4 3 3361 3461 705462713 705462616 1.210000e-30 145.0
33 TraesCS1D01G381700 chr3A 90.741 108 7 2 3360 3466 24718840 24718945 1.560000e-29 141.0
34 TraesCS1D01G381700 chr3A 90.654 107 8 2 3349 3453 221949001 221948895 1.560000e-29 141.0
35 TraesCS1D01G381700 chr5D 93.478 92 6 0 3355 3446 456610439 456610348 2.020000e-28 137.0
36 TraesCS1D01G381700 chr4A 76.534 277 38 18 2240 2494 728920029 728920300 4.380000e-25 126.0
37 TraesCS1D01G381700 chr4A 83.544 79 13 0 2630 2708 573361523 573361445 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G381700 chr1D 457047516 457051690 4174 False 7710 7710 100.000 1 4175 1 chr1D.!!$F1 4174
1 TraesCS1D01G381700 chr1D 487901079 487901692 613 False 952 952 94.634 3561 4175 1 chr1D.!!$F2 614
2 TraesCS1D01G381700 chr1A 549701889 549704881 2992 False 4878 4878 96.082 367 3364 1 chr1A.!!$F1 2997
3 TraesCS1D01G381700 chr1B 626656502 626658074 1572 False 2628 2628 96.825 932 2505 1 chr1B.!!$F2 1573
4 TraesCS1D01G381700 chr1B 626666432 626667309 877 False 1363 1363 94.767 2489 3362 1 chr1B.!!$F3 873
5 TraesCS1D01G381700 chr1B 626651114 626652030 916 False 1282 1282 91.949 1 928 1 chr1B.!!$F1 927
6 TraesCS1D01G381700 chr7D 501110061 501110675 614 True 992 992 95.772 3559 4173 1 chr7D.!!$R3 614
7 TraesCS1D01G381700 chr7D 260977 261592 615 False 983 983 95.455 3560 4175 1 chr7D.!!$F1 615
8 TraesCS1D01G381700 chr7D 185759884 185760501 617 True 957 957 94.660 3560 4175 1 chr7D.!!$R2 615
9 TraesCS1D01G381700 chr2D 171443024 171443640 616 False 968 968 94.976 3559 4175 1 chr2D.!!$F1 616
10 TraesCS1D01G381700 chr3D 535577577 535578189 612 True 955 955 94.780 3563 4175 1 chr3D.!!$R1 612
11 TraesCS1D01G381700 chr3D 120626123 120626737 614 False 953 953 94.634 3561 4175 1 chr3D.!!$F1 614
12 TraesCS1D01G381700 chr3D 553039006 553039618 612 False 952 952 94.634 3561 4175 1 chr3D.!!$F2 614
13 TraesCS1D01G381700 chr5A 290927199 290927813 614 True 953 953 94.634 3561 4175 1 chr5A.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 363 1.134788 AGGGGTCAATCGATTCGACAC 60.135 52.381 26.97 25.30 39.18 3.67 F
1077 1117 0.107945 GGATCCTGGCACTGACAGAC 60.108 60.000 14.03 4.54 42.14 3.51 F
1114 1154 0.392863 TACCGCTGACTACGCTACCA 60.393 55.000 0.00 0.00 0.00 3.25 F
2846 2890 0.546122 TCAGCAGAGGTTGTTGGTGT 59.454 50.000 3.96 0.00 41.99 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2004 0.469705 ACAGCAATTTGGGCACAGGA 60.470 50.0 0.00 0.0 0.00 3.86 R
2066 2106 0.666913 GCCAATGCCATGCAGAGTAG 59.333 55.0 0.00 0.0 43.65 2.57 R
3096 3140 0.173481 TGAGAGACTCAAATCGGCGG 59.827 55.0 7.21 0.0 37.57 6.13 R
3928 3977 0.736053 GTGAAGGTCGTTGTTTGGCA 59.264 50.0 0.00 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 5.250200 TGAATTAGTGGCGTTGGTATTTCT 58.750 37.500 0.00 0.00 0.00 2.52
146 147 1.139163 CTTCGCACCAAAATTGCACC 58.861 50.000 0.00 0.00 40.20 5.01
158 159 8.134895 CACCAAAATTGCACCTTATCGTAATAT 58.865 33.333 0.00 0.00 0.00 1.28
246 252 3.266636 CCCAAAAACCCACAAGAACAAC 58.733 45.455 0.00 0.00 0.00 3.32
248 254 4.512484 CCAAAAACCCACAAGAACAACAT 58.488 39.130 0.00 0.00 0.00 2.71
253 259 8.760569 CAAAAACCCACAAGAACAACATATAAC 58.239 33.333 0.00 0.00 0.00 1.89
312 321 2.358322 AAGAAAAACGAGCCCAGGAA 57.642 45.000 0.00 0.00 0.00 3.36
320 329 1.709147 CGAGCCCAGGAAGCAATTCG 61.709 60.000 0.00 0.00 0.00 3.34
350 359 4.024048 CCAAAATAGGGGTCAATCGATTCG 60.024 45.833 7.92 0.00 0.00 3.34
354 363 1.134788 AGGGGTCAATCGATTCGACAC 60.135 52.381 26.97 25.30 39.18 3.67
648 668 1.153449 CGCAGCCTGGATTTACCGA 60.153 57.895 0.00 0.00 42.61 4.69
667 687 8.570068 TTACCGAAATAGCTACCAGAAATTTT 57.430 30.769 0.00 0.00 0.00 1.82
695 715 4.925646 GGATCTTTGTTGAAGAAACCATGC 59.074 41.667 0.00 0.00 46.90 4.06
814 853 6.320418 CGGGTATACAATTTTTAGCCCTTCTT 59.680 38.462 5.01 0.00 33.00 2.52
815 854 7.468220 CGGGTATACAATTTTTAGCCCTTCTTC 60.468 40.741 5.01 0.00 33.00 2.87
816 855 7.340999 GGGTATACAATTTTTAGCCCTTCTTCA 59.659 37.037 5.01 0.00 32.47 3.02
817 856 8.406297 GGTATACAATTTTTAGCCCTTCTTCAG 58.594 37.037 5.01 0.00 0.00 3.02
818 857 8.957466 GTATACAATTTTTAGCCCTTCTTCAGT 58.043 33.333 0.00 0.00 0.00 3.41
819 858 6.731292 ACAATTTTTAGCCCTTCTTCAGTT 57.269 33.333 0.00 0.00 0.00 3.16
820 859 6.749139 ACAATTTTTAGCCCTTCTTCAGTTC 58.251 36.000 0.00 0.00 0.00 3.01
821 860 6.551227 ACAATTTTTAGCCCTTCTTCAGTTCT 59.449 34.615 0.00 0.00 0.00 3.01
822 861 7.069950 ACAATTTTTAGCCCTTCTTCAGTTCTT 59.930 33.333 0.00 0.00 0.00 2.52
823 862 6.635030 TTTTTAGCCCTTCTTCAGTTCTTC 57.365 37.500 0.00 0.00 0.00 2.87
824 863 5.568620 TTTAGCCCTTCTTCAGTTCTTCT 57.431 39.130 0.00 0.00 0.00 2.85
834 873 3.334583 TCAGTTCTTCTGTGGTATGGC 57.665 47.619 0.00 0.00 43.97 4.40
859 898 1.869767 GGATGGTCGCTGATTCATGAC 59.130 52.381 0.00 9.54 0.00 3.06
874 913 5.464588 TTCATGACCTGATTTATTGGGGA 57.535 39.130 0.00 0.00 32.72 4.81
875 914 5.464588 TCATGACCTGATTTATTGGGGAA 57.535 39.130 0.00 0.00 0.00 3.97
1050 1090 5.487488 TGACCCTAAGAGGCTATTCAGAAAA 59.513 40.000 0.00 0.00 32.73 2.29
1077 1117 0.107945 GGATCCTGGCACTGACAGAC 60.108 60.000 14.03 4.54 42.14 3.51
1114 1154 0.392863 TACCGCTGACTACGCTACCA 60.393 55.000 0.00 0.00 0.00 3.25
1247 1287 2.031683 CACTTGTGTTTCTTGACCGTCC 59.968 50.000 0.00 0.00 0.00 4.79
1252 1292 2.018515 TGTTTCTTGACCGTCCCAAAC 58.981 47.619 0.00 3.61 0.00 2.93
1366 1406 6.554334 TCTAAGTTTACACTGCATTTCACC 57.446 37.500 0.00 0.00 31.60 4.02
1468 1508 2.032634 GGGTCGCGCAACAATGAGA 61.033 57.895 8.75 0.00 0.00 3.27
1551 1591 7.902920 ATATGGTCATGGTAGAAAAGCAATT 57.097 32.000 0.00 0.00 39.48 2.32
1671 1711 3.770263 ACATGTCATTTCCATGCTTCG 57.230 42.857 0.00 0.00 42.74 3.79
1673 1713 3.119743 ACATGTCATTTCCATGCTTCGTG 60.120 43.478 0.00 0.00 42.74 4.35
1869 1909 5.984233 TGATTCGTGGTATGATTTGCTAC 57.016 39.130 0.00 0.00 0.00 3.58
1898 1938 4.165372 ACTCAAAGTTCTGAACACCCCTTA 59.835 41.667 21.50 1.08 0.00 2.69
1964 2004 4.815533 TCTTCATGAGCTAGAAGCACTT 57.184 40.909 14.85 0.00 45.56 3.16
1996 2036 5.640357 CCAAATTGCTGTTGTGATGCTAAAT 59.360 36.000 0.00 0.00 0.00 1.40
2155 2195 0.820871 TGTTGTTCCAGCCCAAACAC 59.179 50.000 0.00 0.00 35.24 3.32
2690 2734 0.759060 AAGGGGGCTGTCCAAAACAC 60.759 55.000 0.00 0.00 37.22 3.32
2738 2782 5.900339 TGCTACAAGACTAAAGTTGTTCG 57.100 39.130 0.00 0.00 37.96 3.95
2747 2791 2.320745 AAAGTTGTTCGGAACTCGGT 57.679 45.000 20.53 2.72 35.01 4.69
2846 2890 0.546122 TCAGCAGAGGTTGTTGGTGT 59.454 50.000 3.96 0.00 41.99 4.16
2901 2945 1.632589 GTCAATTGGGCCTGGAAGTT 58.367 50.000 4.53 0.00 0.00 2.66
2918 2962 7.119846 CCTGGAAGTTGAAGTTAATAAGGTCAG 59.880 40.741 0.00 0.00 0.00 3.51
2956 3000 4.719026 AATGATGCACCTATCTCACCAT 57.281 40.909 0.00 0.00 0.00 3.55
3056 3100 3.573695 ACATACCTGACTTAGCCCGTAT 58.426 45.455 0.00 0.00 0.00 3.06
3057 3101 3.965347 ACATACCTGACTTAGCCCGTATT 59.035 43.478 0.00 0.00 0.00 1.89
3096 3140 3.119291 CAGTGCTCTTATCCGTGATGAC 58.881 50.000 0.00 0.00 0.00 3.06
3227 3271 3.788797 GCGCCTGCATGTTTAGATGTTAC 60.789 47.826 0.00 0.00 42.15 2.50
3275 3319 5.221362 GCTCCCTTCCTGATTAGTTAGTCTC 60.221 48.000 0.00 0.00 0.00 3.36
3276 3320 4.888239 TCCCTTCCTGATTAGTTAGTCTCG 59.112 45.833 0.00 0.00 0.00 4.04
3280 3324 6.016943 CCTTCCTGATTAGTTAGTCTCGGTAG 60.017 46.154 0.00 0.00 0.00 3.18
3300 3347 0.959867 TGTTGGACCATGTGATGCCG 60.960 55.000 0.00 0.00 0.00 5.69
3369 3416 7.468496 TGATATCCTTAACTAGTACTCCCTCC 58.532 42.308 0.00 0.00 0.00 4.30
3370 3417 4.162040 TCCTTAACTAGTACTCCCTCCG 57.838 50.000 0.00 0.00 0.00 4.63
3371 3418 3.525199 TCCTTAACTAGTACTCCCTCCGT 59.475 47.826 0.00 0.00 0.00 4.69
3372 3419 4.721776 TCCTTAACTAGTACTCCCTCCGTA 59.278 45.833 0.00 0.00 0.00 4.02
3373 3420 5.191722 TCCTTAACTAGTACTCCCTCCGTAA 59.808 44.000 0.00 0.00 0.00 3.18
3374 3421 5.888161 CCTTAACTAGTACTCCCTCCGTAAA 59.112 44.000 0.00 0.00 0.00 2.01
3375 3422 6.183360 CCTTAACTAGTACTCCCTCCGTAAAC 60.183 46.154 0.00 0.00 0.00 2.01
3376 3423 4.582973 ACTAGTACTCCCTCCGTAAACT 57.417 45.455 0.00 0.00 0.00 2.66
3377 3424 5.700402 ACTAGTACTCCCTCCGTAAACTA 57.300 43.478 0.00 0.00 0.00 2.24
3378 3425 6.067217 ACTAGTACTCCCTCCGTAAACTAA 57.933 41.667 0.00 0.00 0.00 2.24
3379 3426 6.667661 ACTAGTACTCCCTCCGTAAACTAAT 58.332 40.000 0.00 0.00 0.00 1.73
3380 3427 7.806180 ACTAGTACTCCCTCCGTAAACTAATA 58.194 38.462 0.00 0.00 0.00 0.98
3381 3428 8.443979 ACTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
3382 3429 9.950496 CTAGTACTCCCTCCGTAAACTAATATA 57.050 37.037 0.00 0.00 0.00 0.86
3384 3431 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3385 3432 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3386 3433 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3387 3434 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3388 3435 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3389 3436 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3390 3437 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3391 3438 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3392 3439 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3393 3440 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3394 3441 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3439 3486 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3440 3487 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3441 3488 7.287235 ACGCTCTTATATTAGTTTACAGAGGGT 59.713 37.037 9.47 9.47 44.01 4.34
3442 3489 7.595502 CGCTCTTATATTAGTTTACAGAGGGTG 59.404 40.741 0.00 0.00 35.95 4.61
3443 3490 8.422566 GCTCTTATATTAGTTTACAGAGGGTGT 58.577 37.037 0.00 0.00 43.86 4.16
3449 3496 9.933240 ATATTAGTTTACAGAGGGTGTACTAGT 57.067 33.333 0.00 0.00 41.58 2.57
3451 3498 9.933240 ATTAGTTTACAGAGGGTGTACTAGTAT 57.067 33.333 5.75 0.00 41.58 2.12
3452 3499 7.642082 AGTTTACAGAGGGTGTACTAGTATG 57.358 40.000 5.75 0.94 41.58 2.39
3453 3500 7.408543 AGTTTACAGAGGGTGTACTAGTATGA 58.591 38.462 5.75 0.00 41.58 2.15
3454 3501 7.892241 AGTTTACAGAGGGTGTACTAGTATGAA 59.108 37.037 5.75 0.00 41.58 2.57
3455 3502 7.876936 TTACAGAGGGTGTACTAGTATGAAG 57.123 40.000 5.75 0.00 41.58 3.02
3456 3503 5.828871 ACAGAGGGTGTACTAGTATGAAGT 58.171 41.667 5.75 0.00 37.75 3.01
3457 3504 5.887035 ACAGAGGGTGTACTAGTATGAAGTC 59.113 44.000 5.75 1.66 37.75 3.01
3458 3505 6.123651 CAGAGGGTGTACTAGTATGAAGTCT 58.876 44.000 5.75 3.89 0.00 3.24
3459 3506 6.261381 CAGAGGGTGTACTAGTATGAAGTCTC 59.739 46.154 5.75 8.78 0.00 3.36
3460 3507 5.447757 AGGGTGTACTAGTATGAAGTCTCC 58.552 45.833 5.75 2.61 0.00 3.71
3461 3508 5.194132 AGGGTGTACTAGTATGAAGTCTCCT 59.806 44.000 5.75 2.98 0.00 3.69
3462 3509 5.892686 GGGTGTACTAGTATGAAGTCTCCTT 59.107 44.000 5.75 0.00 0.00 3.36
3463 3510 6.183360 GGGTGTACTAGTATGAAGTCTCCTTG 60.183 46.154 5.75 0.00 0.00 3.61
3464 3511 6.377712 GGTGTACTAGTATGAAGTCTCCTTGT 59.622 42.308 5.75 0.00 0.00 3.16
3465 3512 7.093858 GGTGTACTAGTATGAAGTCTCCTTGTT 60.094 40.741 5.75 0.00 0.00 2.83
3466 3513 8.305317 GTGTACTAGTATGAAGTCTCCTTGTTT 58.695 37.037 5.75 0.00 0.00 2.83
3467 3514 8.521176 TGTACTAGTATGAAGTCTCCTTGTTTC 58.479 37.037 5.75 0.00 0.00 2.78
3468 3515 6.937392 ACTAGTATGAAGTCTCCTTGTTTCC 58.063 40.000 0.00 0.00 0.00 3.13
3469 3516 5.167303 AGTATGAAGTCTCCTTGTTTCCC 57.833 43.478 0.00 0.00 0.00 3.97
3470 3517 4.597507 AGTATGAAGTCTCCTTGTTTCCCA 59.402 41.667 0.00 0.00 0.00 4.37
3471 3518 3.943671 TGAAGTCTCCTTGTTTCCCAA 57.056 42.857 0.00 0.00 0.00 4.12
3472 3519 3.551846 TGAAGTCTCCTTGTTTCCCAAC 58.448 45.455 0.00 0.00 0.00 3.77
3473 3520 3.202151 TGAAGTCTCCTTGTTTCCCAACT 59.798 43.478 0.00 0.00 33.58 3.16
3474 3521 3.214696 AGTCTCCTTGTTTCCCAACTG 57.785 47.619 0.00 0.00 33.58 3.16
3475 3522 1.609072 GTCTCCTTGTTTCCCAACTGC 59.391 52.381 0.00 0.00 33.58 4.40
3476 3523 1.214175 TCTCCTTGTTTCCCAACTGCA 59.786 47.619 0.00 0.00 33.58 4.41
3477 3524 2.158475 TCTCCTTGTTTCCCAACTGCAT 60.158 45.455 0.00 0.00 33.58 3.96
3478 3525 2.629617 CTCCTTGTTTCCCAACTGCATT 59.370 45.455 0.00 0.00 33.58 3.56
3479 3526 2.364970 TCCTTGTTTCCCAACTGCATTG 59.635 45.455 0.00 0.00 38.12 2.82
3480 3527 2.137523 CTTGTTTCCCAACTGCATTGC 58.862 47.619 0.46 0.46 36.93 3.56
3481 3528 0.392336 TGTTTCCCAACTGCATTGCC 59.608 50.000 6.12 0.00 36.93 4.52
3482 3529 0.392336 GTTTCCCAACTGCATTGCCA 59.608 50.000 6.12 0.00 36.93 4.92
3483 3530 1.002315 GTTTCCCAACTGCATTGCCAT 59.998 47.619 6.12 0.00 36.93 4.40
3484 3531 1.350071 TTCCCAACTGCATTGCCATT 58.650 45.000 6.12 0.00 36.93 3.16
3485 3532 0.896923 TCCCAACTGCATTGCCATTC 59.103 50.000 6.12 0.00 36.93 2.67
3486 3533 0.609151 CCCAACTGCATTGCCATTCA 59.391 50.000 6.12 0.00 36.93 2.57
3487 3534 1.208535 CCCAACTGCATTGCCATTCAT 59.791 47.619 6.12 0.00 36.93 2.57
3488 3535 2.276201 CCAACTGCATTGCCATTCATG 58.724 47.619 6.12 0.00 36.93 3.07
3489 3536 1.663643 CAACTGCATTGCCATTCATGC 59.336 47.619 6.12 0.00 40.20 4.06
3490 3537 0.899019 ACTGCATTGCCATTCATGCA 59.101 45.000 6.12 6.65 46.29 3.96
3492 3539 2.700722 TGCATTGCCATTCATGCATT 57.299 40.000 6.12 0.00 44.01 3.56
3493 3540 2.992593 TGCATTGCCATTCATGCATTT 58.007 38.095 6.12 0.00 44.01 2.32
3494 3541 2.680339 TGCATTGCCATTCATGCATTTG 59.320 40.909 6.12 0.00 44.01 2.32
3495 3542 2.939756 GCATTGCCATTCATGCATTTGA 59.060 40.909 0.00 0.00 38.76 2.69
3496 3543 3.563808 GCATTGCCATTCATGCATTTGAT 59.436 39.130 0.00 0.00 38.76 2.57
3497 3544 4.752604 GCATTGCCATTCATGCATTTGATA 59.247 37.500 0.00 0.00 38.76 2.15
3498 3545 5.333798 GCATTGCCATTCATGCATTTGATAC 60.334 40.000 0.00 0.00 38.76 2.24
3499 3546 4.325028 TGCCATTCATGCATTTGATACC 57.675 40.909 0.00 0.00 32.85 2.73
3500 3547 3.243468 TGCCATTCATGCATTTGATACCG 60.243 43.478 0.00 0.00 32.85 4.02
3501 3548 3.004629 GCCATTCATGCATTTGATACCGA 59.995 43.478 0.00 0.00 0.00 4.69
3502 3549 4.790878 CCATTCATGCATTTGATACCGAG 58.209 43.478 0.00 0.00 0.00 4.63
3503 3550 4.276678 CCATTCATGCATTTGATACCGAGT 59.723 41.667 0.00 0.00 0.00 4.18
3504 3551 4.880886 TTCATGCATTTGATACCGAGTG 57.119 40.909 0.00 0.00 0.00 3.51
3505 3552 3.872696 TCATGCATTTGATACCGAGTGT 58.127 40.909 0.00 0.00 0.00 3.55
3506 3553 4.260985 TCATGCATTTGATACCGAGTGTT 58.739 39.130 0.00 0.00 0.00 3.32
3507 3554 5.423886 TCATGCATTTGATACCGAGTGTTA 58.576 37.500 0.00 0.00 0.00 2.41
3508 3555 5.877564 TCATGCATTTGATACCGAGTGTTAA 59.122 36.000 0.00 0.00 0.00 2.01
3509 3556 6.372937 TCATGCATTTGATACCGAGTGTTAAA 59.627 34.615 0.00 0.00 0.00 1.52
3510 3557 6.751514 TGCATTTGATACCGAGTGTTAAAT 57.248 33.333 0.00 0.00 0.00 1.40
3511 3558 7.151999 TGCATTTGATACCGAGTGTTAAATT 57.848 32.000 0.00 0.00 0.00 1.82
3512 3559 8.270080 TGCATTTGATACCGAGTGTTAAATTA 57.730 30.769 0.00 0.00 0.00 1.40
3513 3560 8.898761 TGCATTTGATACCGAGTGTTAAATTAT 58.101 29.630 0.00 0.00 0.00 1.28
3546 3593 9.768662 AAAAATCAGATGCATTTACTTGTTTCT 57.231 25.926 0.00 0.00 0.00 2.52
3547 3594 8.752766 AAATCAGATGCATTTACTTGTTTCTG 57.247 30.769 0.00 0.00 33.10 3.02
3548 3595 5.702865 TCAGATGCATTTACTTGTTTCTGC 58.297 37.500 0.00 0.00 32.48 4.26
3549 3596 5.474532 TCAGATGCATTTACTTGTTTCTGCT 59.525 36.000 0.00 0.00 32.48 4.24
3550 3597 5.571741 CAGATGCATTTACTTGTTTCTGCTG 59.428 40.000 0.00 0.00 0.00 4.41
3551 3598 4.241590 TGCATTTACTTGTTTCTGCTGG 57.758 40.909 0.00 0.00 0.00 4.85
3552 3599 3.636300 TGCATTTACTTGTTTCTGCTGGT 59.364 39.130 0.00 0.00 0.00 4.00
3553 3600 4.824537 TGCATTTACTTGTTTCTGCTGGTA 59.175 37.500 0.00 0.00 0.00 3.25
3554 3601 5.476599 TGCATTTACTTGTTTCTGCTGGTAT 59.523 36.000 0.00 0.00 0.00 2.73
3555 3602 6.657117 TGCATTTACTTGTTTCTGCTGGTATA 59.343 34.615 0.00 0.00 0.00 1.47
3556 3603 7.148255 TGCATTTACTTGTTTCTGCTGGTATAG 60.148 37.037 0.00 0.00 0.00 1.31
3557 3604 7.679638 GCATTTACTTGTTTCTGCTGGTATAGG 60.680 40.741 0.00 0.00 0.00 2.57
3596 3643 4.741239 ATGACCCCCGGCCTCTGT 62.741 66.667 0.00 0.00 0.00 3.41
3599 3646 2.042261 ACCCCCGGCCTCTGTATT 59.958 61.111 0.00 0.00 0.00 1.89
3667 3714 8.941977 CCTTACAAAGTAGTACAACAATATGCA 58.058 33.333 2.52 0.00 0.00 3.96
3775 3822 5.425539 TCACCTAAGCCTAACATCTAAAGCT 59.574 40.000 0.00 0.00 0.00 3.74
3819 3866 4.280019 GGTCCGGGGCACAAACCT 62.280 66.667 0.00 0.00 0.00 3.50
3928 3977 1.227645 CCATCGACGCCACCATGAT 60.228 57.895 0.00 0.00 0.00 2.45
3936 3985 1.875420 CGCCACCATGATGCCAAACA 61.875 55.000 0.00 0.00 0.00 2.83
4160 4209 0.121197 AGGGGAAGTGAGGGGATCAA 59.879 55.000 0.00 0.00 40.43 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.817418 AATACCAACGCCACTAATTCATTAT 57.183 32.000 0.00 0.00 0.00 1.28
217 222 2.025226 TGTGGGTTTTTGGGTGAGTGTA 60.025 45.455 0.00 0.00 0.00 2.90
219 224 1.479709 TGTGGGTTTTTGGGTGAGTG 58.520 50.000 0.00 0.00 0.00 3.51
220 225 2.107366 CTTGTGGGTTTTTGGGTGAGT 58.893 47.619 0.00 0.00 0.00 3.41
221 226 2.383855 TCTTGTGGGTTTTTGGGTGAG 58.616 47.619 0.00 0.00 0.00 3.51
222 227 2.498078 GTTCTTGTGGGTTTTTGGGTGA 59.502 45.455 0.00 0.00 0.00 4.02
276 284 7.312154 GTTTTTCTTTTCTGGGTTGCATTTTT 58.688 30.769 0.00 0.00 0.00 1.94
293 301 2.230660 CTTCCTGGGCTCGTTTTTCTT 58.769 47.619 0.00 0.00 0.00 2.52
312 321 2.270352 TTTGGGTCAGTCGAATTGCT 57.730 45.000 0.00 0.00 0.00 3.91
562 582 2.366533 TCGCTGGAGAAACTACGAGAT 58.633 47.619 0.00 0.00 0.00 2.75
648 668 6.127730 CCCGACAAAATTTCTGGTAGCTATTT 60.128 38.462 0.00 0.00 0.00 1.40
667 687 3.762407 TCTTCAACAAAGATCCCGACA 57.238 42.857 0.00 0.00 39.12 4.35
695 715 0.456221 AGGATCTACACTTGACGCCG 59.544 55.000 0.00 0.00 0.00 6.46
816 855 3.614092 CATGCCATACCACAGAAGAACT 58.386 45.455 0.00 0.00 0.00 3.01
817 856 2.684881 CCATGCCATACCACAGAAGAAC 59.315 50.000 0.00 0.00 0.00 3.01
818 857 2.357050 CCCATGCCATACCACAGAAGAA 60.357 50.000 0.00 0.00 0.00 2.52
819 858 1.212688 CCCATGCCATACCACAGAAGA 59.787 52.381 0.00 0.00 0.00 2.87
820 859 1.683943 CCCATGCCATACCACAGAAG 58.316 55.000 0.00 0.00 0.00 2.85
821 860 0.258484 CCCCATGCCATACCACAGAA 59.742 55.000 0.00 0.00 0.00 3.02
822 861 0.623031 TCCCCATGCCATACCACAGA 60.623 55.000 0.00 0.00 0.00 3.41
823 862 0.479815 ATCCCCATGCCATACCACAG 59.520 55.000 0.00 0.00 0.00 3.66
824 863 0.185658 CATCCCCATGCCATACCACA 59.814 55.000 0.00 0.00 0.00 4.17
834 873 0.179009 AATCAGCGACCATCCCCATG 60.179 55.000 0.00 0.00 0.00 3.66
875 914 2.041216 AGATCTAACCACGGGCCTTTTT 59.959 45.455 0.84 0.00 0.00 1.94
1029 1069 6.264067 CCAATTTTCTGAATAGCCTCTTAGGG 59.736 42.308 0.00 0.00 35.37 3.53
1077 1117 4.632153 CGGTAGATCTTGTAGGGATTTGG 58.368 47.826 0.00 0.00 0.00 3.28
1114 1154 5.010516 CGTCCCATATCTCTTCTTCTGTCAT 59.989 44.000 0.00 0.00 0.00 3.06
1247 1287 0.896940 ATGCTGGCCACTCTGTTTGG 60.897 55.000 0.00 0.00 37.17 3.28
1252 1292 1.748122 GACCATGCTGGCCACTCTG 60.748 63.158 0.00 0.00 42.67 3.35
1366 1406 6.755206 TCCCCATGTAAGATATGAACTAACG 58.245 40.000 0.00 0.00 0.00 3.18
1468 1508 0.644843 CTTTGCGCGCAAACTGTTTT 59.355 45.000 45.17 0.00 40.51 2.43
1619 1659 9.382275 CAAAAGGGATAAGGGATAAAATGTTTG 57.618 33.333 0.00 0.00 0.00 2.93
1622 1662 9.951866 ATACAAAAGGGATAAGGGATAAAATGT 57.048 29.630 0.00 0.00 0.00 2.71
1671 1711 2.027192 TGAGTTGATAGCCCTGGAACAC 60.027 50.000 0.00 0.00 0.00 3.32
1673 1713 3.055094 TCTTGAGTTGATAGCCCTGGAAC 60.055 47.826 0.00 0.00 0.00 3.62
1869 1909 5.447818 GGTGTTCAGAACTTTGAGTGTTCAG 60.448 44.000 14.51 1.87 44.30 3.02
1964 2004 0.469705 ACAGCAATTTGGGCACAGGA 60.470 50.000 0.00 0.00 0.00 3.86
2066 2106 0.666913 GCCAATGCCATGCAGAGTAG 59.333 55.000 0.00 0.00 43.65 2.57
2132 2172 2.079170 TTGGGCTGGAACAACAATCA 57.921 45.000 0.00 0.00 38.70 2.57
2155 2195 9.277783 CATTCTACCTTTACAAATCCTGATAGG 57.722 37.037 0.00 0.00 36.46 2.57
2576 2620 4.503714 TGTTGTTCCTCACCTTCTTTCT 57.496 40.909 0.00 0.00 0.00 2.52
2690 2734 2.535331 CACCTTTGTTTTGTGGAACCG 58.465 47.619 0.00 0.00 34.36 4.44
2738 2782 2.544480 GCTAATTGCAACCGAGTTCC 57.456 50.000 0.00 0.00 42.31 3.62
2846 2890 4.684724 AGGACTACCTTCACCATCAGTTA 58.315 43.478 0.00 0.00 45.36 2.24
2901 2945 7.328737 GCCTCTTACTGACCTTATTAACTTCA 58.671 38.462 0.00 0.00 0.00 3.02
2918 2962 3.596214 TCATTTGTTCTCGGCCTCTTAC 58.404 45.455 0.00 0.00 0.00 2.34
2956 3000 1.094785 GCTGGATTGCTTTCGCCTAA 58.905 50.000 0.00 0.00 34.43 2.69
3056 3100 5.452496 GCACTGTAGGCTCTCAGAATATCAA 60.452 44.000 21.00 0.00 35.84 2.57
3057 3101 4.038522 GCACTGTAGGCTCTCAGAATATCA 59.961 45.833 21.00 0.00 35.84 2.15
3096 3140 0.173481 TGAGAGACTCAAATCGGCGG 59.827 55.000 7.21 0.00 37.57 6.13
3177 3221 2.386660 GCTGGAGCGACAGAGCAAC 61.387 63.158 13.81 0.00 40.97 4.17
3227 3271 2.885266 CAGGAGCATGAATTCCATCAGG 59.115 50.000 2.27 0.00 35.88 3.86
3275 3319 1.001520 TCACATGGTCCAACACTACCG 59.998 52.381 0.00 0.00 38.70 4.02
3276 3320 2.851263 TCACATGGTCCAACACTACC 57.149 50.000 0.00 0.00 36.24 3.18
3280 3324 0.527565 GGCATCACATGGTCCAACAC 59.472 55.000 0.00 0.00 0.00 3.32
3364 3411 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3365 3412 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3366 3413 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3367 3414 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3368 3415 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3413 3460 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3414 3461 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3415 3462 7.287235 ACCCTCTGTAAACTAATATAAGAGCGT 59.713 37.037 0.00 0.00 0.00 5.07
3416 3463 7.595502 CACCCTCTGTAAACTAATATAAGAGCG 59.404 40.741 0.00 0.00 0.00 5.03
3417 3464 8.422566 ACACCCTCTGTAAACTAATATAAGAGC 58.577 37.037 0.00 0.00 0.00 4.09
3423 3470 9.933240 ACTAGTACACCCTCTGTAAACTAATAT 57.067 33.333 0.00 0.00 37.09 1.28
3425 3472 9.933240 ATACTAGTACACCCTCTGTAAACTAAT 57.067 33.333 4.31 0.00 37.09 1.73
3426 3473 9.182214 CATACTAGTACACCCTCTGTAAACTAA 57.818 37.037 4.31 0.00 37.09 2.24
3427 3474 8.551440 TCATACTAGTACACCCTCTGTAAACTA 58.449 37.037 4.31 0.00 37.09 2.24
3428 3475 7.408543 TCATACTAGTACACCCTCTGTAAACT 58.591 38.462 4.31 0.00 37.09 2.66
3429 3476 7.636150 TCATACTAGTACACCCTCTGTAAAC 57.364 40.000 4.31 0.00 37.09 2.01
3430 3477 7.892241 ACTTCATACTAGTACACCCTCTGTAAA 59.108 37.037 4.31 0.00 37.09 2.01
3431 3478 7.408543 ACTTCATACTAGTACACCCTCTGTAA 58.591 38.462 4.31 0.00 37.09 2.41
3432 3479 6.966751 ACTTCATACTAGTACACCCTCTGTA 58.033 40.000 4.31 0.00 33.91 2.74
3433 3480 5.828871 ACTTCATACTAGTACACCCTCTGT 58.171 41.667 4.31 0.00 36.82 3.41
3434 3481 6.123651 AGACTTCATACTAGTACACCCTCTG 58.876 44.000 4.31 0.00 0.00 3.35
3435 3482 6.330178 AGACTTCATACTAGTACACCCTCT 57.670 41.667 4.31 0.50 0.00 3.69
3436 3483 5.532032 GGAGACTTCATACTAGTACACCCTC 59.468 48.000 4.31 7.37 0.00 4.30
3437 3484 5.194132 AGGAGACTTCATACTAGTACACCCT 59.806 44.000 4.31 1.39 37.44 4.34
3438 3485 5.447757 AGGAGACTTCATACTAGTACACCC 58.552 45.833 4.31 0.00 37.44 4.61
3455 3502 1.609072 GCAGTTGGGAAACAAGGAGAC 59.391 52.381 0.00 0.00 40.38 3.36
3456 3503 1.214175 TGCAGTTGGGAAACAAGGAGA 59.786 47.619 0.00 0.00 40.38 3.71
3457 3504 1.691196 TGCAGTTGGGAAACAAGGAG 58.309 50.000 0.00 0.00 40.38 3.69
3458 3505 2.364970 CAATGCAGTTGGGAAACAAGGA 59.635 45.455 0.00 0.00 40.38 3.36
3459 3506 2.758009 CAATGCAGTTGGGAAACAAGG 58.242 47.619 0.00 0.00 40.38 3.61
3460 3507 2.137523 GCAATGCAGTTGGGAAACAAG 58.862 47.619 0.00 0.00 40.38 3.16
3461 3508 1.202627 GGCAATGCAGTTGGGAAACAA 60.203 47.619 7.79 0.00 38.29 2.83
3462 3509 0.392336 GGCAATGCAGTTGGGAAACA 59.608 50.000 7.79 0.00 38.29 2.83
3463 3510 0.392336 TGGCAATGCAGTTGGGAAAC 59.608 50.000 7.79 0.00 38.29 2.78
3464 3511 1.350071 ATGGCAATGCAGTTGGGAAA 58.650 45.000 7.79 0.00 38.29 3.13
3465 3512 1.275856 GAATGGCAATGCAGTTGGGAA 59.724 47.619 7.79 0.00 38.29 3.97
3466 3513 0.896923 GAATGGCAATGCAGTTGGGA 59.103 50.000 7.79 0.00 38.29 4.37
3467 3514 0.609151 TGAATGGCAATGCAGTTGGG 59.391 50.000 7.79 0.00 38.29 4.12
3468 3515 2.276201 CATGAATGGCAATGCAGTTGG 58.724 47.619 7.79 0.00 38.29 3.77
3469 3516 1.663643 GCATGAATGGCAATGCAGTTG 59.336 47.619 15.79 0.00 39.61 3.16
3470 3517 1.276705 TGCATGAATGGCAATGCAGTT 59.723 42.857 18.65 0.15 44.01 3.16
3471 3518 0.899019 TGCATGAATGGCAATGCAGT 59.101 45.000 18.65 0.00 44.01 4.40
3472 3519 3.750828 TGCATGAATGGCAATGCAG 57.249 47.368 18.65 0.00 44.01 4.41
3474 3521 2.939756 TCAAATGCATGAATGGCAATGC 59.060 40.909 14.23 14.23 45.60 3.56
3475 3522 5.178623 GGTATCAAATGCATGAATGGCAATG 59.821 40.000 0.00 0.00 45.60 2.82
3476 3523 5.302360 GGTATCAAATGCATGAATGGCAAT 58.698 37.500 0.00 0.00 45.60 3.56
3477 3524 4.695396 GGTATCAAATGCATGAATGGCAA 58.305 39.130 0.00 0.00 45.60 4.52
3478 3525 3.243468 CGGTATCAAATGCATGAATGGCA 60.243 43.478 0.00 0.00 46.66 4.92
3479 3526 3.004629 TCGGTATCAAATGCATGAATGGC 59.995 43.478 0.00 0.00 32.06 4.40
3480 3527 4.276678 ACTCGGTATCAAATGCATGAATGG 59.723 41.667 0.00 0.00 32.06 3.16
3481 3528 5.209977 CACTCGGTATCAAATGCATGAATG 58.790 41.667 0.00 0.00 32.06 2.67
3482 3529 4.883585 ACACTCGGTATCAAATGCATGAAT 59.116 37.500 0.00 0.00 32.06 2.57
3483 3530 4.260985 ACACTCGGTATCAAATGCATGAA 58.739 39.130 0.00 0.00 32.06 2.57
3484 3531 3.872696 ACACTCGGTATCAAATGCATGA 58.127 40.909 0.00 0.00 0.00 3.07
3485 3532 4.621068 AACACTCGGTATCAAATGCATG 57.379 40.909 0.00 0.00 0.00 4.06
3486 3533 6.751514 TTTAACACTCGGTATCAAATGCAT 57.248 33.333 0.00 0.00 0.00 3.96
3487 3534 6.751514 ATTTAACACTCGGTATCAAATGCA 57.248 33.333 0.00 0.00 0.00 3.96
3520 3567 9.768662 AGAAACAAGTAAATGCATCTGATTTTT 57.231 25.926 0.00 0.00 0.00 1.94
3521 3568 9.199982 CAGAAACAAGTAAATGCATCTGATTTT 57.800 29.630 0.00 0.00 38.00 1.82
3522 3569 7.330208 GCAGAAACAAGTAAATGCATCTGATTT 59.670 33.333 0.00 0.00 38.00 2.17
3523 3570 6.810182 GCAGAAACAAGTAAATGCATCTGATT 59.190 34.615 0.00 0.00 38.00 2.57
3524 3571 6.152323 AGCAGAAACAAGTAAATGCATCTGAT 59.848 34.615 0.00 0.00 38.00 2.90
3525 3572 5.474532 AGCAGAAACAAGTAAATGCATCTGA 59.525 36.000 0.00 0.00 38.00 3.27
3526 3573 5.571741 CAGCAGAAACAAGTAAATGCATCTG 59.428 40.000 0.00 0.48 38.42 2.90
3527 3574 5.336213 CCAGCAGAAACAAGTAAATGCATCT 60.336 40.000 0.00 0.00 36.15 2.90
3528 3575 4.860907 CCAGCAGAAACAAGTAAATGCATC 59.139 41.667 0.00 0.00 36.15 3.91
3529 3576 4.281688 ACCAGCAGAAACAAGTAAATGCAT 59.718 37.500 0.00 0.00 36.15 3.96
3530 3577 3.636300 ACCAGCAGAAACAAGTAAATGCA 59.364 39.130 0.00 0.00 36.15 3.96
3531 3578 4.243007 ACCAGCAGAAACAAGTAAATGC 57.757 40.909 0.00 0.00 0.00 3.56
3532 3579 7.336931 ACCTATACCAGCAGAAACAAGTAAATG 59.663 37.037 0.00 0.00 0.00 2.32
3533 3580 7.402862 ACCTATACCAGCAGAAACAAGTAAAT 58.597 34.615 0.00 0.00 0.00 1.40
3534 3581 6.775708 ACCTATACCAGCAGAAACAAGTAAA 58.224 36.000 0.00 0.00 0.00 2.01
3535 3582 6.368779 ACCTATACCAGCAGAAACAAGTAA 57.631 37.500 0.00 0.00 0.00 2.24
3536 3583 6.368779 AACCTATACCAGCAGAAACAAGTA 57.631 37.500 0.00 0.00 0.00 2.24
3537 3584 4.910458 ACCTATACCAGCAGAAACAAGT 57.090 40.909 0.00 0.00 0.00 3.16
3538 3585 6.575162 AAAACCTATACCAGCAGAAACAAG 57.425 37.500 0.00 0.00 0.00 3.16
3539 3586 6.969993 AAAAACCTATACCAGCAGAAACAA 57.030 33.333 0.00 0.00 0.00 2.83
3596 3643 2.694628 GGCCACATGCATCTTCCAAATA 59.305 45.455 0.00 0.00 43.89 1.40
3599 3646 0.251698 TGGCCACATGCATCTTCCAA 60.252 50.000 0.00 0.00 43.89 3.53
3667 3714 2.762327 GTTGCCAAGATGGTGGATTCAT 59.238 45.455 0.00 0.00 41.65 2.57
3696 3743 6.013032 CCCTTCATCATATGGATTGGAGTAGT 60.013 42.308 2.13 0.00 32.57 2.73
3775 3822 3.071206 GCTCAGTCGAGGCCTCCA 61.071 66.667 27.20 12.44 39.88 3.86
3819 3866 2.231235 ACATATGTGAGTGCGTCAGACA 59.769 45.455 7.78 0.00 35.13 3.41
3928 3977 0.736053 GTGAAGGTCGTTGTTTGGCA 59.264 50.000 0.00 0.00 0.00 4.92
3936 3985 1.080974 CGCGTAGGTGAAGGTCGTT 60.081 57.895 0.00 0.00 0.00 3.85
4018 4067 1.301401 GTGGCGCTTGTGAGTGGTA 60.301 57.895 7.64 0.00 33.93 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.