Multiple sequence alignment - TraesCS1D01G381300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G381300 chr1D 100.000 2297 0 0 1 2297 456250729 456253025 0.000000e+00 4242.0
1 TraesCS1D01G381300 chr1D 86.364 616 43 22 714 1325 456202883 456203461 3.220000e-178 634.0
2 TraesCS1D01G381300 chr1D 88.889 504 31 13 855 1354 457033236 457033718 4.220000e-167 597.0
3 TraesCS1D01G381300 chr1D 95.439 285 13 0 1013 1297 457044149 457044433 2.690000e-124 455.0
4 TraesCS1D01G381300 chr1A 91.049 715 46 10 679 1383 549670333 549671039 0.000000e+00 950.0
5 TraesCS1D01G381300 chr1A 84.507 497 62 10 1791 2275 549671379 549671872 5.740000e-131 477.0
6 TraesCS1D01G381300 chr1A 95.439 285 13 0 1013 1297 549695451 549695735 2.690000e-124 455.0
7 TraesCS1D01G381300 chr1A 76.667 240 53 3 1049 1288 549666540 549666776 1.850000e-26 130.0
8 TraesCS1D01G381300 chr6D 91.642 682 51 4 1 678 137121675 137122354 0.000000e+00 939.0
9 TraesCS1D01G381300 chr6D 90.058 684 61 6 1 680 351929042 351928362 0.000000e+00 880.0
10 TraesCS1D01G381300 chr4D 91.864 676 50 4 6 678 32770733 32771406 0.000000e+00 939.0
11 TraesCS1D01G381300 chr4D 90.237 676 59 5 1 673 431555952 431555281 0.000000e+00 876.0
12 TraesCS1D01G381300 chr4D 90.089 676 60 5 1 673 431734618 431733947 0.000000e+00 870.0
13 TraesCS1D01G381300 chr4D 89.941 676 61 5 1 673 431621717 431621046 0.000000e+00 865.0
14 TraesCS1D01G381300 chr2D 89.898 683 63 4 1 680 187619853 187619174 0.000000e+00 874.0
15 TraesCS1D01G381300 chr2D 88.333 60 7 0 1380 1439 81476959 81477018 3.170000e-09 73.1
16 TraesCS1D01G381300 chr7D 89.853 680 58 7 1 678 53639121 53639791 0.000000e+00 863.0
17 TraesCS1D01G381300 chr3D 89.605 683 64 6 1 679 578275139 578274460 0.000000e+00 861.0
18 TraesCS1D01G381300 chr1B 86.813 637 44 22 679 1302 626609992 626610601 0.000000e+00 675.0
19 TraesCS1D01G381300 chr1B 96.140 285 11 0 1013 1297 626649127 626649411 1.240000e-127 466.0
20 TraesCS1D01G381300 chr1B 76.829 246 51 6 1045 1288 626601053 626601294 1.430000e-27 134.0
21 TraesCS1D01G381300 chr6A 87.342 79 10 0 1382 1460 57899067 57898989 8.740000e-15 91.6
22 TraesCS1D01G381300 chr7B 86.076 79 11 0 1382 1460 733482780 733482858 4.070000e-13 86.1
23 TraesCS1D01G381300 chr5D 91.667 48 4 0 1460 1507 287787589 287787636 1.470000e-07 67.6
24 TraesCS1D01G381300 chr4A 84.615 65 10 0 1382 1446 619441440 619441504 5.300000e-07 65.8
25 TraesCS1D01G381300 chr4A 84.615 65 10 0 1382 1446 619445306 619445370 5.300000e-07 65.8
26 TraesCS1D01G381300 chr4A 84.615 65 10 0 1382 1446 619506502 619506566 5.300000e-07 65.8
27 TraesCS1D01G381300 chr4A 84.615 65 10 0 1382 1446 619577852 619577916 5.300000e-07 65.8
28 TraesCS1D01G381300 chr4A 81.013 79 15 0 1382 1460 741587388 741587466 1.910000e-06 63.9
29 TraesCS1D01G381300 chr5B 82.857 70 8 4 1382 1449 411677089 411677156 2.460000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G381300 chr1D 456250729 456253025 2296 False 4242 4242 100.000000 1 2297 1 chr1D.!!$F2 2296
1 TraesCS1D01G381300 chr1D 456202883 456203461 578 False 634 634 86.364000 714 1325 1 chr1D.!!$F1 611
2 TraesCS1D01G381300 chr1A 549666540 549671872 5332 False 519 950 84.074333 679 2275 3 chr1A.!!$F2 1596
3 TraesCS1D01G381300 chr6D 137121675 137122354 679 False 939 939 91.642000 1 678 1 chr6D.!!$F1 677
4 TraesCS1D01G381300 chr6D 351928362 351929042 680 True 880 880 90.058000 1 680 1 chr6D.!!$R1 679
5 TraesCS1D01G381300 chr4D 32770733 32771406 673 False 939 939 91.864000 6 678 1 chr4D.!!$F1 672
6 TraesCS1D01G381300 chr4D 431555281 431555952 671 True 876 876 90.237000 1 673 1 chr4D.!!$R1 672
7 TraesCS1D01G381300 chr4D 431733947 431734618 671 True 870 870 90.089000 1 673 1 chr4D.!!$R3 672
8 TraesCS1D01G381300 chr4D 431621046 431621717 671 True 865 865 89.941000 1 673 1 chr4D.!!$R2 672
9 TraesCS1D01G381300 chr2D 187619174 187619853 679 True 874 874 89.898000 1 680 1 chr2D.!!$R1 679
10 TraesCS1D01G381300 chr7D 53639121 53639791 670 False 863 863 89.853000 1 678 1 chr7D.!!$F1 677
11 TraesCS1D01G381300 chr3D 578274460 578275139 679 True 861 861 89.605000 1 679 1 chr3D.!!$R1 678
12 TraesCS1D01G381300 chr1B 626609992 626610601 609 False 675 675 86.813000 679 1302 1 chr1B.!!$F2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 4024 0.114168 CCCCATTCTCCACAACCCAA 59.886 55.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 5357 0.173708 CTTCTACCCCGAGACACTGC 59.826 60.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.003839 TGGGCGATCTGCTTTTCGT 60.004 52.632 8.94 0.00 45.43 3.85
40 41 2.143122 GATCTGCTTTTCGTCCACACA 58.857 47.619 0.00 0.00 0.00 3.72
44 46 1.400142 TGCTTTTCGTCCACACAACAG 59.600 47.619 0.00 0.00 0.00 3.16
120 122 3.622612 CACACATGGCAACTATGATTCGA 59.377 43.478 0.00 0.00 37.61 3.71
139 141 0.321564 ATGCTAGACGGCAACTGCAA 60.322 50.000 3.76 0.00 45.68 4.08
163 165 1.296056 GCGTACGTGGCAACCAGATT 61.296 55.000 17.90 0.00 32.34 2.40
295 297 2.465860 AAGCACACACGGCAACTATA 57.534 45.000 0.00 0.00 0.00 1.31
296 298 2.691409 AGCACACACGGCAACTATAT 57.309 45.000 0.00 0.00 0.00 0.86
309 311 6.600032 ACGGCAACTATATGGTTTGATTACAA 59.400 34.615 1.04 0.00 0.00 2.41
316 318 6.861065 ATATGGTTTGATTACAAGCGGTAG 57.139 37.500 0.00 0.00 37.94 3.18
335 339 8.803235 AGCGGTAGTATCATAAATTAGACATGA 58.197 33.333 0.00 0.00 33.47 3.07
409 413 5.554437 TTGCCATTCCGGATAACTACATA 57.446 39.130 4.15 0.00 36.56 2.29
419 423 4.081142 CGGATAACTACATATGCCATCCCA 60.081 45.833 1.58 0.00 0.00 4.37
437 441 3.016736 CCCAGATGGCAACTAAATCGTT 58.983 45.455 0.00 0.00 37.61 3.85
469 475 0.450583 CCTAACGTAGCTGCGTCAGA 59.549 55.000 29.76 16.74 45.00 3.27
491 497 2.094234 ACGTATGGGCATTTTTGCTTCC 60.094 45.455 0.00 0.00 34.73 3.46
627 633 1.134580 CCTCCTACTCATGCCACACAG 60.135 57.143 0.00 0.00 0.00 3.66
628 634 1.552337 CTCCTACTCATGCCACACAGT 59.448 52.381 0.00 0.00 0.00 3.55
661 669 3.887621 ATCTAGTATGCCACACGTGTT 57.112 42.857 20.79 7.21 0.00 3.32
690 3806 4.317671 TCAGCGTCCTAGTAATAAAGCC 57.682 45.455 0.00 0.00 0.00 4.35
704 3820 4.619227 AGCCCAACACGTCACCCG 62.619 66.667 0.00 0.00 44.03 5.28
705 3821 4.612412 GCCCAACACGTCACCCGA 62.612 66.667 0.00 0.00 40.70 5.14
706 3822 2.345991 CCCAACACGTCACCCGAT 59.654 61.111 0.00 0.00 40.70 4.18
708 3824 1.292223 CCAACACGTCACCCGATCT 59.708 57.895 0.00 0.00 40.70 2.75
709 3825 1.014044 CCAACACGTCACCCGATCTG 61.014 60.000 0.00 0.00 40.70 2.90
710 3826 1.374252 AACACGTCACCCGATCTGC 60.374 57.895 0.00 0.00 40.70 4.26
711 3827 2.094757 AACACGTCACCCGATCTGCA 62.095 55.000 0.00 0.00 40.70 4.41
712 3828 1.807165 CACGTCACCCGATCTGCAG 60.807 63.158 7.63 7.63 40.70 4.41
714 3830 2.887568 GTCACCCGATCTGCAGCG 60.888 66.667 9.47 7.88 0.00 5.18
715 3831 3.381983 TCACCCGATCTGCAGCGT 61.382 61.111 9.47 0.00 0.00 5.07
716 3832 2.887568 CACCCGATCTGCAGCGTC 60.888 66.667 9.47 8.82 0.00 5.19
717 3833 4.498520 ACCCGATCTGCAGCGTCG 62.499 66.667 25.15 25.15 35.29 5.12
838 3965 2.202703 CGCGCCACACCTACTACC 60.203 66.667 0.00 0.00 0.00 3.18
841 3968 1.885163 GCGCCACACCTACTACCTGT 61.885 60.000 0.00 0.00 0.00 4.00
842 3969 0.606604 CGCCACACCTACTACCTGTT 59.393 55.000 0.00 0.00 0.00 3.16
843 3970 1.671850 CGCCACACCTACTACCTGTTG 60.672 57.143 0.00 0.00 0.00 3.33
873 4000 2.261345 CCTATAAAACGCACCGTCGAA 58.739 47.619 0.00 0.00 39.99 3.71
877 4004 4.936823 AACGCACCGTCGAACGCT 62.937 61.111 0.00 0.00 39.99 5.07
897 4024 0.114168 CCCCATTCTCCACAACCCAA 59.886 55.000 0.00 0.00 0.00 4.12
898 4025 1.256812 CCCATTCTCCACAACCCAAC 58.743 55.000 0.00 0.00 0.00 3.77
899 4026 1.256812 CCATTCTCCACAACCCAACC 58.743 55.000 0.00 0.00 0.00 3.77
900 4027 1.256812 CATTCTCCACAACCCAACCC 58.743 55.000 0.00 0.00 0.00 4.11
901 4028 0.856982 ATTCTCCACAACCCAACCCA 59.143 50.000 0.00 0.00 0.00 4.51
902 4029 0.856982 TTCTCCACAACCCAACCCAT 59.143 50.000 0.00 0.00 0.00 4.00
903 4030 0.856982 TCTCCACAACCCAACCCATT 59.143 50.000 0.00 0.00 0.00 3.16
992 4126 3.089874 TCCCATCCGAGCCCAAGG 61.090 66.667 0.00 0.00 0.00 3.61
1037 4171 1.817099 CCCTCGTCTGCTTCATGGC 60.817 63.158 0.00 0.00 0.00 4.40
1038 4172 1.220206 CCTCGTCTGCTTCATGGCT 59.780 57.895 0.00 0.00 0.00 4.75
1219 4353 1.613520 GCAAGTACAAGAAGGACCCCC 60.614 57.143 0.00 0.00 0.00 5.40
1298 4432 2.633509 GCCTGCCAAGGTGCTGAAG 61.634 63.158 0.00 0.00 46.43 3.02
1334 4471 2.225791 CTTCGTCCATGTCCCTCGCA 62.226 60.000 0.00 0.00 0.00 5.10
1383 4520 1.245732 ACCGAGAGTGTGTGAGGTAC 58.754 55.000 0.00 0.00 0.00 3.34
1384 4521 4.116750 GTACCGAGAGTGTGTGAGGTACT 61.117 52.174 13.46 0.00 46.18 2.73
1403 4540 8.035448 AGGTACTCCCTCCATCTTAAAATAAG 57.965 38.462 0.00 0.00 40.71 1.73
1404 4541 7.628101 AGGTACTCCCTCCATCTTAAAATAAGT 59.372 37.037 0.00 0.00 40.71 2.24
1405 4542 7.715686 GGTACTCCCTCCATCTTAAAATAAGTG 59.284 40.741 0.00 0.00 0.00 3.16
1406 4543 7.272144 ACTCCCTCCATCTTAAAATAAGTGT 57.728 36.000 0.00 0.00 0.00 3.55
1407 4544 7.339482 ACTCCCTCCATCTTAAAATAAGTGTC 58.661 38.462 0.00 0.00 0.00 3.67
1408 4545 7.182930 ACTCCCTCCATCTTAAAATAAGTGTCT 59.817 37.037 0.00 0.00 0.00 3.41
1409 4546 7.928873 TCCCTCCATCTTAAAATAAGTGTCTT 58.071 34.615 0.00 0.00 0.00 3.01
1410 4547 7.829211 TCCCTCCATCTTAAAATAAGTGTCTTG 59.171 37.037 0.00 0.00 0.00 3.02
1411 4548 7.829211 CCCTCCATCTTAAAATAAGTGTCTTGA 59.171 37.037 0.00 0.00 0.00 3.02
1412 4549 8.669243 CCTCCATCTTAAAATAAGTGTCTTGAC 58.331 37.037 0.00 0.00 0.00 3.18
1413 4550 9.442047 CTCCATCTTAAAATAAGTGTCTTGACT 57.558 33.333 2.35 0.00 0.00 3.41
1414 4551 9.793259 TCCATCTTAAAATAAGTGTCTTGACTT 57.207 29.630 2.35 0.00 39.54 3.01
1482 4619 7.918536 ATAGAGTAAGTGTAAAGTCGAGACA 57.081 36.000 5.99 0.00 0.00 3.41
1483 4620 5.999721 AGAGTAAGTGTAAAGTCGAGACAC 58.000 41.667 5.99 10.37 43.08 3.67
1492 4629 8.068893 GTGTAAAGTCGAGACACTTATTTTGA 57.931 34.615 5.99 0.00 40.26 2.69
1493 4630 8.545420 GTGTAAAGTCGAGACACTTATTTTGAA 58.455 33.333 5.99 0.00 40.26 2.69
1494 4631 9.100554 TGTAAAGTCGAGACACTTATTTTGAAA 57.899 29.630 5.99 0.00 35.45 2.69
1495 4632 9.925268 GTAAAGTCGAGACACTTATTTTGAAAA 57.075 29.630 5.99 0.00 35.45 2.29
1497 4634 7.190920 AGTCGAGACACTTATTTTGAAAAGG 57.809 36.000 5.99 0.00 0.00 3.11
1498 4635 6.990349 AGTCGAGACACTTATTTTGAAAAGGA 59.010 34.615 5.99 0.00 0.00 3.36
1499 4636 7.171678 AGTCGAGACACTTATTTTGAAAAGGAG 59.828 37.037 5.99 0.00 0.00 3.69
1500 4637 6.426937 TCGAGACACTTATTTTGAAAAGGAGG 59.573 38.462 0.00 0.00 0.00 4.30
1501 4638 6.348540 CGAGACACTTATTTTGAAAAGGAGGG 60.349 42.308 0.00 0.56 0.00 4.30
1502 4639 6.610830 AGACACTTATTTTGAAAAGGAGGGA 58.389 36.000 10.91 0.00 0.00 4.20
1503 4640 6.717084 AGACACTTATTTTGAAAAGGAGGGAG 59.283 38.462 10.91 3.19 0.00 4.30
1504 4641 6.373759 ACACTTATTTTGAAAAGGAGGGAGT 58.626 36.000 10.91 3.65 0.00 3.85
1505 4642 7.523415 ACACTTATTTTGAAAAGGAGGGAGTA 58.477 34.615 10.91 0.00 0.00 2.59
1522 4659 8.039538 GGAGGGAGTATAATAATAAAACGAGGG 58.960 40.741 0.00 0.00 0.00 4.30
1530 4667 5.881923 ATAATAAAACGAGGGGAGTGCTA 57.118 39.130 0.00 0.00 0.00 3.49
1535 4672 7.735326 ATAAAACGAGGGGAGTGCTATATAT 57.265 36.000 0.00 0.00 0.00 0.86
1536 4673 8.834004 ATAAAACGAGGGGAGTGCTATATATA 57.166 34.615 0.00 0.00 0.00 0.86
1537 4674 6.527057 AAACGAGGGGAGTGCTATATATAC 57.473 41.667 0.00 0.00 0.00 1.47
1539 4676 5.828871 ACGAGGGGAGTGCTATATATACTT 58.171 41.667 0.00 0.00 0.00 2.24
1542 4679 7.338957 ACGAGGGGAGTGCTATATATACTTTAC 59.661 40.741 0.00 0.00 0.00 2.01
1543 4680 7.466996 CGAGGGGAGTGCTATATATACTTTACG 60.467 44.444 2.43 0.00 0.00 3.18
1568 4707 9.019764 CGAAACAGAAATAAATTTTGACAGTGT 57.980 29.630 0.00 0.00 0.00 3.55
1591 4730 0.828762 ACTACTGTGGTACGGTGCCA 60.829 55.000 14.29 14.29 38.36 4.92
1592 4731 0.108804 CTACTGTGGTACGGTGCCAG 60.109 60.000 18.67 10.33 38.36 4.85
1593 4732 2.162338 TACTGTGGTACGGTGCCAGC 62.162 60.000 18.67 13.27 38.36 4.85
1594 4733 3.238497 TGTGGTACGGTGCCAGCT 61.238 61.111 18.67 0.00 36.57 4.24
1602 4741 0.250727 ACGGTGCCAGCTGTTATGTT 60.251 50.000 13.81 0.00 0.00 2.71
1609 4748 2.489329 GCCAGCTGTTATGTTCATGTGT 59.511 45.455 13.81 0.00 0.00 3.72
1612 4751 4.378770 CCAGCTGTTATGTTCATGTGTCAC 60.379 45.833 13.81 0.00 0.00 3.67
1630 4769 5.065602 GTGTCACGTATACTCATGTCCTGTA 59.934 44.000 0.56 0.00 0.00 2.74
1635 4774 7.120726 TCACGTATACTCATGTCCTGTATATGG 59.879 40.741 20.26 14.36 39.00 2.74
1642 4781 3.130280 TGTCCTGTATATGGCAGCATG 57.870 47.619 0.00 0.00 40.87 4.06
1645 4784 4.286808 TGTCCTGTATATGGCAGCATGTAT 59.713 41.667 0.00 0.00 39.31 2.29
1686 4825 9.974980 AACATAAATATTTTGTTCTGTTCCGTT 57.025 25.926 5.91 0.00 0.00 4.44
1687 4826 9.620660 ACATAAATATTTTGTTCTGTTCCGTTC 57.379 29.630 5.91 0.00 0.00 3.95
1688 4827 9.072294 CATAAATATTTTGTTCTGTTCCGTTCC 57.928 33.333 5.91 0.00 0.00 3.62
1692 4831 0.599204 TGTTCTGTTCCGTTCCGCTC 60.599 55.000 0.00 0.00 0.00 5.03
1769 4949 7.891183 AATCAGAATATATGAACGGTAGCAC 57.109 36.000 0.00 0.00 0.00 4.40
1772 4952 5.635280 CAGAATATATGAACGGTAGCACCTG 59.365 44.000 4.21 0.00 35.66 4.00
1773 4953 2.240493 ATATGAACGGTAGCACCTGC 57.760 50.000 4.21 0.00 35.66 4.85
1788 4969 3.813166 GCACCTGCGGTTACATGTTATAT 59.187 43.478 2.30 0.00 31.02 0.86
1789 4970 4.992319 GCACCTGCGGTTACATGTTATATA 59.008 41.667 2.30 0.00 31.02 0.86
1796 4998 9.393249 CTGCGGTTACATGTTATATAAAAATGG 57.607 33.333 2.30 3.76 0.00 3.16
1859 5066 5.100259 GTGCTTGATGATGTGAAGGATTTG 58.900 41.667 0.00 0.00 0.00 2.32
1875 5082 6.105397 AGGATTTGCATGTGTTGAGAAATT 57.895 33.333 0.00 0.00 0.00 1.82
1894 5101 7.593825 AGAAATTAAATGTGGAGTGCTTGTAC 58.406 34.615 0.00 0.00 0.00 2.90
1895 5102 5.545658 ATTAAATGTGGAGTGCTTGTACG 57.454 39.130 0.00 0.00 0.00 3.67
1905 5112 4.628333 GGAGTGCTTGTACGTGCTTAATAA 59.372 41.667 4.97 0.00 0.00 1.40
1909 5116 8.073355 AGTGCTTGTACGTGCTTAATAATATC 57.927 34.615 4.97 0.00 0.00 1.63
1919 5126 8.521176 ACGTGCTTAATAATATCGAGGACTTAT 58.479 33.333 0.00 0.00 0.00 1.73
1954 5161 1.826385 AATGCAGTGGGCTTGTACTC 58.174 50.000 0.00 0.00 45.15 2.59
1958 5165 2.370519 TGCAGTGGGCTTGTACTCTTTA 59.629 45.455 0.00 0.00 45.15 1.85
1962 5169 5.221165 GCAGTGGGCTTGTACTCTTTAAAAA 60.221 40.000 0.00 0.00 40.25 1.94
1988 5195 2.753452 AGGATGACAAGCTTGCTTCATG 59.247 45.455 27.90 7.43 27.93 3.07
2017 5224 2.193087 TAGGAAAAGGGCGAGCCACC 62.193 60.000 16.65 10.19 37.98 4.61
2029 5237 1.835121 GAGCCACCGAAAACAACAAC 58.165 50.000 0.00 0.00 0.00 3.32
2032 5240 1.858399 GCCACCGAAAACAACAACGAG 60.858 52.381 0.00 0.00 0.00 4.18
2057 5265 4.253685 GGTCGGAAAGAAATGATGAGTCA 58.746 43.478 0.00 0.00 39.04 3.41
2059 5267 5.390991 GGTCGGAAAGAAATGATGAGTCAAC 60.391 44.000 0.00 0.00 38.01 3.18
2064 5272 7.596248 CGGAAAGAAATGATGAGTCAACAAAAT 59.404 33.333 7.22 0.00 38.01 1.82
2065 5273 8.706035 GGAAAGAAATGATGAGTCAACAAAATG 58.294 33.333 7.22 0.00 38.01 2.32
2067 5275 6.161381 AGAAATGATGAGTCAACAAAATGGC 58.839 36.000 7.22 0.00 38.01 4.40
2096 5304 7.114095 ACCAAGTGTTAAGAACCTTGTTTAGA 58.886 34.615 14.18 0.00 37.67 2.10
2097 5305 7.066645 ACCAAGTGTTAAGAACCTTGTTTAGAC 59.933 37.037 14.18 0.00 37.67 2.59
2101 5309 7.927092 AGTGTTAAGAACCTTGTTTAGACTCTC 59.073 37.037 0.00 0.00 0.00 3.20
2102 5310 7.709613 GTGTTAAGAACCTTGTTTAGACTCTCA 59.290 37.037 0.00 0.00 0.00 3.27
2106 5314 6.159988 AGAACCTTGTTTAGACTCTCAATCG 58.840 40.000 0.00 0.00 0.00 3.34
2111 5319 7.661847 ACCTTGTTTAGACTCTCAATCGAATTT 59.338 33.333 0.00 0.00 0.00 1.82
2123 5331 9.563898 CTCTCAATCGAATTTTGAATTTGATCA 57.436 29.630 13.68 0.00 32.51 2.92
2130 5338 8.252417 TCGAATTTTGAATTTGATCATGGACAT 58.748 29.630 0.00 0.00 0.00 3.06
2148 5357 5.418524 TGGACATGAATTACTTGGGAATGTG 59.581 40.000 0.00 0.00 0.00 3.21
2149 5358 5.329035 ACATGAATTACTTGGGAATGTGC 57.671 39.130 0.00 0.00 0.00 4.57
2152 5361 4.406456 TGAATTACTTGGGAATGTGCAGT 58.594 39.130 0.00 0.00 0.00 4.40
2168 5377 0.173708 CAGTGTCTCGGGGTAGAAGC 59.826 60.000 0.00 0.00 0.00 3.86
2191 5401 1.601914 GGGCAATTGTTGTGGACGAAC 60.602 52.381 7.40 0.00 0.00 3.95
2202 5412 1.034356 TGGACGAACCTCTTGTCGAA 58.966 50.000 0.00 0.00 39.86 3.71
2203 5413 1.409790 TGGACGAACCTCTTGTCGAAA 59.590 47.619 0.00 0.00 39.86 3.46
2204 5414 2.036733 TGGACGAACCTCTTGTCGAAAT 59.963 45.455 0.00 0.00 39.86 2.17
2218 5432 1.066143 TCGAAATGGCCTGACCTCTTC 60.066 52.381 3.32 0.00 40.22 2.87
2230 5444 0.170561 ACCTCTTCGGTCGTTCGATG 59.829 55.000 0.00 6.68 44.93 3.84
2231 5445 1.140407 CCTCTTCGGTCGTTCGATGC 61.140 60.000 0.00 0.00 39.03 3.91
2232 5446 0.456142 CTCTTCGGTCGTTCGATGCA 60.456 55.000 0.00 0.00 39.03 3.96
2236 5450 1.006825 TCGGTCGTTCGATGCAGTTG 61.007 55.000 0.00 0.00 33.92 3.16
2241 5455 1.635663 CGTTCGATGCAGTTGGACCC 61.636 60.000 0.00 0.00 0.00 4.46
2242 5456 0.605319 GTTCGATGCAGTTGGACCCA 60.605 55.000 0.00 0.00 0.00 4.51
2243 5457 0.109532 TTCGATGCAGTTGGACCCAA 59.890 50.000 0.00 0.00 0.00 4.12
2245 5459 1.885871 GATGCAGTTGGACCCAAGC 59.114 57.895 1.01 4.07 36.52 4.01
2254 5468 1.656587 TGGACCCAAGCAGTACATCT 58.343 50.000 0.00 0.00 0.00 2.90
2260 5474 1.675714 CCAAGCAGTACATCTTCGGCA 60.676 52.381 0.00 0.00 0.00 5.69
2265 5479 2.216046 CAGTACATCTTCGGCATGCAT 58.784 47.619 21.36 0.00 0.00 3.96
2266 5480 3.392882 CAGTACATCTTCGGCATGCATA 58.607 45.455 21.36 3.17 0.00 3.14
2269 5483 3.413846 ACATCTTCGGCATGCATAGAT 57.586 42.857 21.36 19.06 0.00 1.98
2275 5489 0.675837 CGGCATGCATAGATCAGGGG 60.676 60.000 21.36 0.00 0.00 4.79
2276 5490 0.403271 GGCATGCATAGATCAGGGGT 59.597 55.000 21.36 0.00 0.00 4.95
2277 5491 1.531423 GCATGCATAGATCAGGGGTG 58.469 55.000 14.21 0.00 0.00 4.61
2278 5492 1.202855 GCATGCATAGATCAGGGGTGT 60.203 52.381 14.21 0.00 0.00 4.16
2279 5493 2.750807 GCATGCATAGATCAGGGGTGTT 60.751 50.000 14.21 0.00 0.00 3.32
2280 5494 3.144506 CATGCATAGATCAGGGGTGTTC 58.855 50.000 0.00 0.00 0.00 3.18
2281 5495 1.138859 TGCATAGATCAGGGGTGTTCG 59.861 52.381 0.00 0.00 0.00 3.95
2282 5496 1.871080 CATAGATCAGGGGTGTTCGC 58.129 55.000 0.00 0.00 0.00 4.70
2283 5497 1.138859 CATAGATCAGGGGTGTTCGCA 59.861 52.381 0.00 0.00 0.00 5.10
2284 5498 0.535335 TAGATCAGGGGTGTTCGCAC 59.465 55.000 0.00 0.00 46.91 5.34
2285 5499 1.194781 AGATCAGGGGTGTTCGCACT 61.195 55.000 0.00 0.00 46.81 4.40
2286 5500 0.321653 GATCAGGGGTGTTCGCACTT 60.322 55.000 0.00 0.00 46.81 3.16
2287 5501 0.981183 ATCAGGGGTGTTCGCACTTA 59.019 50.000 0.00 0.00 46.81 2.24
2288 5502 0.759959 TCAGGGGTGTTCGCACTTAA 59.240 50.000 0.00 0.00 46.81 1.85
2289 5503 0.872388 CAGGGGTGTTCGCACTTAAC 59.128 55.000 0.00 0.00 46.81 2.01
2290 5504 0.250597 AGGGGTGTTCGCACTTAACC 60.251 55.000 0.00 0.00 46.81 2.85
2291 5505 0.250597 GGGGTGTTCGCACTTAACCT 60.251 55.000 0.00 0.00 46.81 3.50
2292 5506 1.601166 GGGTGTTCGCACTTAACCTT 58.399 50.000 0.00 0.00 46.81 3.50
2293 5507 1.534163 GGGTGTTCGCACTTAACCTTC 59.466 52.381 0.00 0.00 46.81 3.46
2294 5508 1.534163 GGTGTTCGCACTTAACCTTCC 59.466 52.381 0.00 0.00 46.81 3.46
2295 5509 2.215196 GTGTTCGCACTTAACCTTCCA 58.785 47.619 0.00 0.00 44.38 3.53
2296 5510 2.812011 GTGTTCGCACTTAACCTTCCAT 59.188 45.455 0.00 0.00 44.38 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.668751 GTTGTGTGGACGAAAAGCAGA 59.331 47.619 0.00 0.00 0.00 4.26
33 34 0.740149 ACGTACGACTGTTGTGTGGA 59.260 50.000 24.41 0.00 0.00 4.02
40 41 2.582728 TCCAACAACGTACGACTGTT 57.417 45.000 24.41 24.56 33.62 3.16
44 46 0.441145 GCCATCCAACAACGTACGAC 59.559 55.000 24.41 0.00 0.00 4.34
120 122 0.321564 TTGCAGTTGCCGTCTAGCAT 60.322 50.000 1.06 0.00 43.64 3.79
139 141 3.044898 TTGCCACGTACGCGCAAT 61.045 55.556 29.09 4.52 42.83 3.56
163 165 2.924421 TCACAGTTGCCATGTGTGTTA 58.076 42.857 11.76 0.00 46.49 2.41
267 269 3.243805 TGCCGTGTGTGCTTAACTACTTA 60.244 43.478 0.00 0.00 0.00 2.24
278 280 1.330521 CCATATAGTTGCCGTGTGTGC 59.669 52.381 0.00 0.00 0.00 4.57
295 297 4.585879 ACTACCGCTTGTAATCAAACCAT 58.414 39.130 0.00 0.00 32.87 3.55
296 298 4.010667 ACTACCGCTTGTAATCAAACCA 57.989 40.909 0.00 0.00 32.87 3.67
309 311 8.803235 TCATGTCTAATTTATGATACTACCGCT 58.197 33.333 0.00 0.00 0.00 5.52
419 423 5.063880 GGGATAACGATTTAGTTGCCATCT 58.936 41.667 0.00 0.00 35.70 2.90
465 470 3.366883 GCAAAAATGCCCATACGTTCTGA 60.367 43.478 0.00 0.00 0.00 3.27
469 475 3.584834 GAAGCAAAAATGCCCATACGTT 58.415 40.909 0.00 0.00 34.90 3.99
474 480 1.339342 GCAGGAAGCAAAAATGCCCAT 60.339 47.619 0.00 0.00 44.79 4.00
627 633 5.473931 CATACTAGATATCTGCCCACACAC 58.526 45.833 15.79 0.00 0.00 3.82
628 634 4.021104 GCATACTAGATATCTGCCCACACA 60.021 45.833 15.79 0.00 0.00 3.72
680 688 3.120095 GGTGACGTGTTGGGCTTTATTAC 60.120 47.826 0.00 0.00 0.00 1.89
681 689 3.075884 GGTGACGTGTTGGGCTTTATTA 58.924 45.455 0.00 0.00 0.00 0.98
682 690 1.883926 GGTGACGTGTTGGGCTTTATT 59.116 47.619 0.00 0.00 0.00 1.40
684 692 0.535553 GGGTGACGTGTTGGGCTTTA 60.536 55.000 0.00 0.00 0.00 1.85
690 3806 1.014044 CAGATCGGGTGACGTGTTGG 61.014 60.000 0.00 0.00 44.69 3.77
704 3820 2.925395 CGCATCGACGCTGCAGATC 61.925 63.158 20.43 13.11 39.64 2.75
705 3821 2.958543 CGCATCGACGCTGCAGAT 60.959 61.111 20.43 3.79 39.64 2.90
734 3852 0.465097 TCCACTAGGGACCGATCGAC 60.465 60.000 18.66 10.14 42.15 4.20
745 3863 2.950781 TGGACATAGAGCTCCACTAGG 58.049 52.381 10.93 0.47 31.20 3.02
759 3879 3.188100 CGACATGCGCGTGGACAT 61.188 61.111 31.55 12.39 0.00 3.06
838 3965 1.378882 ATAGGCCGCATGCACAACAG 61.379 55.000 19.57 0.00 43.89 3.16
841 3968 1.756430 TTTATAGGCCGCATGCACAA 58.244 45.000 19.57 1.60 43.89 3.33
842 3969 1.403679 GTTTTATAGGCCGCATGCACA 59.596 47.619 19.57 0.00 43.89 4.57
843 3970 1.596954 CGTTTTATAGGCCGCATGCAC 60.597 52.381 19.57 8.95 43.89 4.57
873 4000 1.488705 TTGTGGAGAATGGGGAGCGT 61.489 55.000 0.00 0.00 0.00 5.07
877 4004 0.774096 TGGGTTGTGGAGAATGGGGA 60.774 55.000 0.00 0.00 0.00 4.81
878 4005 0.114168 TTGGGTTGTGGAGAATGGGG 59.886 55.000 0.00 0.00 0.00 4.96
915 4042 0.826256 TGTGCGTAGGTGAGGAGTGT 60.826 55.000 0.00 0.00 0.00 3.55
916 4043 0.109086 CTGTGCGTAGGTGAGGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
1219 4353 3.181967 GACGTAGCGCTGCAGGTG 61.182 66.667 25.26 11.19 0.00 4.00
1298 4432 0.173708 AAGCTCGTGGCACTAGCTAC 59.826 55.000 36.97 15.19 45.61 3.58
1347 4484 1.529826 CGGTACTCCAACGTACGTAGC 60.530 57.143 23.12 13.22 40.44 3.58
1357 4494 1.611977 CACACACTCTCGGTACTCCAA 59.388 52.381 0.00 0.00 0.00 3.53
1383 4520 7.569240 AGACACTTATTTTAAGATGGAGGGAG 58.431 38.462 1.47 0.00 0.00 4.30
1384 4521 7.510675 AGACACTTATTTTAAGATGGAGGGA 57.489 36.000 1.47 0.00 0.00 4.20
1385 4522 7.829211 TCAAGACACTTATTTTAAGATGGAGGG 59.171 37.037 1.47 0.00 0.00 4.30
1386 4523 8.669243 GTCAAGACACTTATTTTAAGATGGAGG 58.331 37.037 1.47 0.00 0.00 4.30
1387 4524 9.442047 AGTCAAGACACTTATTTTAAGATGGAG 57.558 33.333 2.72 0.00 0.00 3.86
1388 4525 9.793259 AAGTCAAGACACTTATTTTAAGATGGA 57.207 29.630 2.72 0.00 34.70 3.41
1456 4593 9.440773 TGTCTCGACTTTACACTTACTCTATAA 57.559 33.333 0.00 0.00 0.00 0.98
1457 4594 8.877779 GTGTCTCGACTTTACACTTACTCTATA 58.122 37.037 7.84 0.00 40.25 1.31
1458 4595 7.750769 GTGTCTCGACTTTACACTTACTCTAT 58.249 38.462 7.84 0.00 40.25 1.98
1459 4596 7.126726 GTGTCTCGACTTTACACTTACTCTA 57.873 40.000 7.84 0.00 40.25 2.43
1460 4597 5.999721 GTGTCTCGACTTTACACTTACTCT 58.000 41.667 7.84 0.00 40.25 3.24
1467 4604 8.068893 TCAAAATAAGTGTCTCGACTTTACAC 57.931 34.615 7.25 7.25 43.02 2.90
1468 4605 8.651391 TTCAAAATAAGTGTCTCGACTTTACA 57.349 30.769 0.00 0.00 37.38 2.41
1469 4606 9.925268 TTTTCAAAATAAGTGTCTCGACTTTAC 57.075 29.630 0.00 0.00 37.38 2.01
1471 4608 8.129211 CCTTTTCAAAATAAGTGTCTCGACTTT 58.871 33.333 0.00 0.00 37.38 2.66
1472 4609 7.497909 TCCTTTTCAAAATAAGTGTCTCGACTT 59.502 33.333 0.00 0.00 39.54 3.01
1473 4610 6.990349 TCCTTTTCAAAATAAGTGTCTCGACT 59.010 34.615 0.00 0.00 0.00 4.18
1474 4611 7.186021 TCCTTTTCAAAATAAGTGTCTCGAC 57.814 36.000 0.00 0.00 0.00 4.20
1475 4612 6.426937 CCTCCTTTTCAAAATAAGTGTCTCGA 59.573 38.462 0.00 0.00 0.00 4.04
1476 4613 6.348540 CCCTCCTTTTCAAAATAAGTGTCTCG 60.349 42.308 0.00 0.00 0.00 4.04
1477 4614 6.715264 TCCCTCCTTTTCAAAATAAGTGTCTC 59.285 38.462 0.00 0.00 0.00 3.36
1478 4615 6.610830 TCCCTCCTTTTCAAAATAAGTGTCT 58.389 36.000 0.00 0.00 0.00 3.41
1479 4616 6.490381 ACTCCCTCCTTTTCAAAATAAGTGTC 59.510 38.462 0.00 0.00 0.00 3.67
1480 4617 6.373759 ACTCCCTCCTTTTCAAAATAAGTGT 58.626 36.000 0.00 0.00 0.00 3.55
1481 4618 6.901081 ACTCCCTCCTTTTCAAAATAAGTG 57.099 37.500 0.00 0.00 0.00 3.16
1495 4632 8.813951 CCTCGTTTTATTATTATACTCCCTCCT 58.186 37.037 0.00 0.00 0.00 3.69
1496 4633 8.039538 CCCTCGTTTTATTATTATACTCCCTCC 58.960 40.741 0.00 0.00 0.00 4.30
1497 4634 8.039538 CCCCTCGTTTTATTATTATACTCCCTC 58.960 40.741 0.00 0.00 0.00 4.30
1498 4635 7.736234 TCCCCTCGTTTTATTATTATACTCCCT 59.264 37.037 0.00 0.00 0.00 4.20
1499 4636 7.910584 TCCCCTCGTTTTATTATTATACTCCC 58.089 38.462 0.00 0.00 0.00 4.30
1500 4637 8.591940 ACTCCCCTCGTTTTATTATTATACTCC 58.408 37.037 0.00 0.00 0.00 3.85
1501 4638 9.420551 CACTCCCCTCGTTTTATTATTATACTC 57.579 37.037 0.00 0.00 0.00 2.59
1502 4639 7.876582 GCACTCCCCTCGTTTTATTATTATACT 59.123 37.037 0.00 0.00 0.00 2.12
1503 4640 7.876582 AGCACTCCCCTCGTTTTATTATTATAC 59.123 37.037 0.00 0.00 0.00 1.47
1504 4641 7.970102 AGCACTCCCCTCGTTTTATTATTATA 58.030 34.615 0.00 0.00 0.00 0.98
1505 4642 6.838382 AGCACTCCCCTCGTTTTATTATTAT 58.162 36.000 0.00 0.00 0.00 1.28
1522 4659 9.903682 TGTTTCGTAAAGTATATATAGCACTCC 57.096 33.333 0.00 0.00 0.00 3.85
1542 4679 9.019764 ACACTGTCAAAATTTATTTCTGTTTCG 57.980 29.630 0.00 0.00 0.00 3.46
1566 4705 3.004629 CACCGTACCACAGTAGTACAACA 59.995 47.826 9.58 0.00 40.10 3.33
1568 4707 2.030007 GCACCGTACCACAGTAGTACAA 60.030 50.000 9.58 0.00 40.10 2.41
1578 4717 2.742372 CAGCTGGCACCGTACCAC 60.742 66.667 5.57 0.00 32.49 4.16
1591 4730 3.433274 CGTGACACATGAACATAACAGCT 59.567 43.478 6.37 0.00 0.00 4.24
1592 4731 3.186409 ACGTGACACATGAACATAACAGC 59.814 43.478 6.37 0.00 0.00 4.40
1593 4732 4.990543 ACGTGACACATGAACATAACAG 57.009 40.909 6.37 0.00 0.00 3.16
1594 4733 7.317390 AGTATACGTGACACATGAACATAACA 58.683 34.615 6.37 0.00 0.00 2.41
1602 4741 5.449999 GGACATGAGTATACGTGACACATGA 60.450 44.000 30.72 2.01 44.08 3.07
1609 4748 7.120726 CCATATACAGGACATGAGTATACGTGA 59.879 40.741 0.00 0.00 34.58 4.35
1612 4751 6.127730 TGCCATATACAGGACATGAGTATACG 60.128 42.308 0.00 0.00 34.58 3.06
1630 4769 6.070366 ACTCTGACATATACATGCTGCCATAT 60.070 38.462 0.00 0.00 35.39 1.78
1635 4774 8.763049 TTATTACTCTGACATATACATGCTGC 57.237 34.615 0.00 0.00 35.39 5.25
1744 4889 7.387948 GGTGCTACCGTTCATATATTCTGATTT 59.612 37.037 0.00 0.00 0.00 2.17
1745 4890 6.874134 GGTGCTACCGTTCATATATTCTGATT 59.126 38.462 0.00 0.00 0.00 2.57
1747 4892 5.538813 AGGTGCTACCGTTCATATATTCTGA 59.461 40.000 0.00 0.00 44.90 3.27
1748 4893 5.635280 CAGGTGCTACCGTTCATATATTCTG 59.365 44.000 0.00 0.00 44.90 3.02
1749 4894 5.784177 CAGGTGCTACCGTTCATATATTCT 58.216 41.667 0.00 0.00 44.90 2.40
1750 4895 4.389077 GCAGGTGCTACCGTTCATATATTC 59.611 45.833 0.00 0.00 44.90 1.75
1751 4896 4.315803 GCAGGTGCTACCGTTCATATATT 58.684 43.478 0.00 0.00 44.90 1.28
1772 4952 9.738832 AACCATTTTTATATAACATGTAACCGC 57.261 29.630 0.00 0.00 0.00 5.68
1812 5014 4.839121 TGTAAGCCTTCCACGTCATTAAT 58.161 39.130 0.00 0.00 0.00 1.40
1814 5016 3.965379 TGTAAGCCTTCCACGTCATTA 57.035 42.857 0.00 0.00 0.00 1.90
1817 5019 1.346395 ACATGTAAGCCTTCCACGTCA 59.654 47.619 0.00 0.00 0.00 4.35
1818 5020 1.732259 CACATGTAAGCCTTCCACGTC 59.268 52.381 0.00 0.00 0.00 4.34
1819 5021 1.808411 CACATGTAAGCCTTCCACGT 58.192 50.000 0.00 0.00 0.00 4.49
1820 5022 0.447801 GCACATGTAAGCCTTCCACG 59.552 55.000 0.00 0.00 0.00 4.94
1826 5033 3.354948 TCATCAAGCACATGTAAGCCT 57.645 42.857 0.00 0.00 0.00 4.58
1828 5035 4.095334 TCACATCATCAAGCACATGTAAGC 59.905 41.667 0.00 0.00 0.00 3.09
1859 5066 6.867816 TCCACATTTAATTTCTCAACACATGC 59.132 34.615 0.00 0.00 0.00 4.06
1875 5082 3.743911 CACGTACAAGCACTCCACATTTA 59.256 43.478 0.00 0.00 0.00 1.40
1894 5101 8.912787 ATAAGTCCTCGATATTATTAAGCACG 57.087 34.615 0.00 0.00 0.00 5.34
1905 5112 8.809468 TTCTAGCACATATAAGTCCTCGATAT 57.191 34.615 0.00 0.00 0.00 1.63
1934 5141 2.162681 GAGTACAAGCCCACTGCATTT 58.837 47.619 0.00 0.00 44.83 2.32
1935 5142 1.352352 AGAGTACAAGCCCACTGCATT 59.648 47.619 0.00 0.00 44.83 3.56
1939 5146 6.385649 TTTTTAAAGAGTACAAGCCCACTG 57.614 37.500 0.00 0.00 0.00 3.66
1962 5169 4.500499 AGCAAGCTTGTCATCCTCTATT 57.500 40.909 26.55 0.00 0.00 1.73
1964 5171 3.261643 TGAAGCAAGCTTGTCATCCTCTA 59.738 43.478 26.55 5.85 36.26 2.43
1988 5195 3.181500 CGCCCTTTTCCTAAAGTACATGC 60.181 47.826 0.00 0.00 39.29 4.06
2001 5208 3.431725 CGGTGGCTCGCCCTTTTC 61.432 66.667 5.33 0.00 34.56 2.29
2017 5224 3.541711 GACCATCTCGTTGTTGTTTTCG 58.458 45.455 0.00 0.00 0.00 3.46
2029 5237 3.521560 TCATTTCTTTCCGACCATCTCG 58.478 45.455 0.00 0.00 42.54 4.04
2032 5240 4.878397 ACTCATCATTTCTTTCCGACCATC 59.122 41.667 0.00 0.00 0.00 3.51
2043 5251 6.161381 GCCATTTTGTTGACTCATCATTTCT 58.839 36.000 0.00 0.00 33.85 2.52
2065 5273 3.373130 GGTTCTTAACACTTGGTATCGCC 59.627 47.826 0.00 0.00 37.90 5.54
2067 5275 5.699458 ACAAGGTTCTTAACACTTGGTATCG 59.301 40.000 17.47 0.00 40.68 2.92
2076 5284 7.709613 TGAGAGTCTAAACAAGGTTCTTAACAC 59.290 37.037 0.00 0.00 0.00 3.32
2096 5304 9.565213 GATCAAATTCAAAATTCGATTGAGAGT 57.435 29.630 0.66 0.00 38.01 3.24
2097 5305 9.563898 TGATCAAATTCAAAATTCGATTGAGAG 57.436 29.630 0.00 0.00 38.01 3.20
2101 5309 9.089601 TCCATGATCAAATTCAAAATTCGATTG 57.910 29.630 0.00 0.00 0.00 2.67
2102 5310 9.090692 GTCCATGATCAAATTCAAAATTCGATT 57.909 29.630 0.00 0.00 0.00 3.34
2106 5314 9.373603 TCATGTCCATGATCAAATTCAAAATTC 57.626 29.630 0.00 0.00 42.42 2.17
2111 5319 9.806203 GTAATTCATGTCCATGATCAAATTCAA 57.194 29.630 10.56 0.00 46.12 2.69
2123 5331 6.097270 CACATTCCCAAGTAATTCATGTCCAT 59.903 38.462 0.00 0.00 0.00 3.41
2124 5332 5.418524 CACATTCCCAAGTAATTCATGTCCA 59.581 40.000 0.00 0.00 0.00 4.02
2130 5338 4.218200 CACTGCACATTCCCAAGTAATTCA 59.782 41.667 0.00 0.00 0.00 2.57
2138 5346 1.877680 CGAGACACTGCACATTCCCAA 60.878 52.381 0.00 0.00 0.00 4.12
2148 5357 0.173708 CTTCTACCCCGAGACACTGC 59.826 60.000 0.00 0.00 0.00 4.40
2149 5358 0.173708 GCTTCTACCCCGAGACACTG 59.826 60.000 0.00 0.00 0.00 3.66
2152 5361 2.050350 CCGCTTCTACCCCGAGACA 61.050 63.158 0.00 0.00 0.00 3.41
2168 5377 1.905843 TCCACAACAATTGCCCCCG 60.906 57.895 5.05 0.00 0.00 5.73
2191 5401 1.089920 CAGGCCATTTCGACAAGAGG 58.910 55.000 5.01 0.00 0.00 3.69
2202 5412 1.604378 CCGAAGAGGTCAGGCCATT 59.396 57.895 5.01 0.00 40.61 3.16
2203 5413 3.313874 CCGAAGAGGTCAGGCCAT 58.686 61.111 5.01 0.00 40.61 4.40
2218 5432 1.416049 CAACTGCATCGAACGACCG 59.584 57.895 0.00 0.00 0.00 4.79
2230 5444 0.250727 TACTGCTTGGGTCCAACTGC 60.251 55.000 0.00 2.97 0.00 4.40
2231 5445 1.202758 TGTACTGCTTGGGTCCAACTG 60.203 52.381 0.00 3.75 0.00 3.16
2232 5446 1.136828 TGTACTGCTTGGGTCCAACT 58.863 50.000 0.00 0.00 0.00 3.16
2236 5450 2.633488 GAAGATGTACTGCTTGGGTCC 58.367 52.381 5.68 0.00 0.00 4.46
2241 5455 1.725641 TGCCGAAGATGTACTGCTTG 58.274 50.000 5.68 0.49 0.00 4.01
2242 5456 2.283298 CATGCCGAAGATGTACTGCTT 58.717 47.619 0.00 0.00 0.00 3.91
2243 5457 1.945387 CATGCCGAAGATGTACTGCT 58.055 50.000 0.00 0.00 0.00 4.24
2245 5459 1.655484 TGCATGCCGAAGATGTACTG 58.345 50.000 16.68 0.00 0.00 2.74
2254 5468 1.271001 CCCTGATCTATGCATGCCGAA 60.271 52.381 16.68 0.00 0.00 4.30
2260 5474 2.224378 CGAACACCCCTGATCTATGCAT 60.224 50.000 3.79 3.79 0.00 3.96
2265 5479 0.535335 GTGCGAACACCCCTGATCTA 59.465 55.000 0.00 0.00 41.21 1.98
2266 5480 1.296715 GTGCGAACACCCCTGATCT 59.703 57.895 0.00 0.00 41.21 2.75
2276 5490 2.623878 TGGAAGGTTAAGTGCGAACA 57.376 45.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.