Multiple sequence alignment - TraesCS1D01G380700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G380700 chr1D 100.000 6255 0 0 1 6255 456059150 456065404 0.000000e+00 11551.0
1 TraesCS1D01G380700 chr1D 82.305 1978 255 37 1515 3447 456034638 456032711 0.000000e+00 1626.0
2 TraesCS1D01G380700 chr1D 89.030 629 40 15 868 1475 456035263 456034643 0.000000e+00 752.0
3 TraesCS1D01G380700 chr1D 85.784 408 40 8 3282 3687 456032993 456032602 3.490000e-112 416.0
4 TraesCS1D01G380700 chr1D 85.166 391 38 10 3292 3663 456062306 456062695 3.540000e-102 383.0
5 TraesCS1D01G380700 chr1D 85.166 391 38 10 3157 3546 456062441 456062812 3.540000e-102 383.0
6 TraesCS1D01G380700 chr1D 87.251 251 29 1 3417 3664 456032993 456032743 3.690000e-72 283.0
7 TraesCS1D01G380700 chr1D 84.615 169 25 1 2515 2683 456032145 456031978 3.880000e-37 167.0
8 TraesCS1D01G380700 chr1B 91.187 3404 184 49 296 3630 626509912 626513268 0.000000e+00 4518.0
9 TraesCS1D01G380700 chr1B 90.814 1905 126 18 3157 5043 626512927 626514800 0.000000e+00 2503.0
10 TraesCS1D01G380700 chr1B 90.050 603 45 7 5666 6255 626515770 626516370 0.000000e+00 767.0
11 TraesCS1D01G380700 chr1B 86.099 705 83 5 2720 3415 626498465 626497767 0.000000e+00 745.0
12 TraesCS1D01G380700 chr1B 81.126 906 124 24 3417 4286 626498035 626497141 0.000000e+00 682.0
13 TraesCS1D01G380700 chr1B 91.630 454 17 6 1043 1475 626500469 626500016 5.360000e-170 608.0
14 TraesCS1D01G380700 chr1B 96.848 349 10 1 1676 2024 626499773 626499426 3.250000e-162 582.0
15 TraesCS1D01G380700 chr1B 85.787 394 33 11 3292 3663 626512792 626513184 4.540000e-106 396.0
16 TraesCS1D01G380700 chr1B 90.265 226 12 7 5351 5572 626514804 626515023 2.850000e-73 287.0
17 TraesCS1D01G380700 chr1B 92.157 51 4 0 5824 5874 169667191 169667241 8.700000e-09 73.1
18 TraesCS1D01G380700 chr1A 94.586 1847 89 6 3471 5307 549606212 549608057 0.000000e+00 2846.0
19 TraesCS1D01G380700 chr1A 88.258 1848 156 35 875 2680 549590038 549588210 0.000000e+00 2154.0
20 TraesCS1D01G380700 chr1A 84.002 2144 269 38 1799 3905 549621246 549619140 0.000000e+00 1991.0
21 TraesCS1D01G380700 chr1A 96.754 1109 31 3 1638 2745 549604390 549605494 0.000000e+00 1844.0
22 TraesCS1D01G380700 chr1A 84.956 791 103 12 2653 3431 549585812 549585026 0.000000e+00 787.0
23 TraesCS1D01G380700 chr1A 86.667 615 56 12 296 899 549603395 549603994 0.000000e+00 658.0
24 TraesCS1D01G380700 chr1A 85.063 636 32 25 877 1475 549622494 549621885 1.940000e-164 590.0
25 TraesCS1D01G380700 chr1A 81.096 730 83 27 3599 4286 549585033 549584317 3.320000e-147 532.0
26 TraesCS1D01G380700 chr1A 89.378 386 38 1 3282 3664 549619882 549619497 3.390000e-132 483.0
27 TraesCS1D01G380700 chr1A 84.692 503 42 13 3903 4372 549619101 549618601 2.640000e-128 470.0
28 TraesCS1D01G380700 chr1A 91.437 327 20 6 5303 5625 549608096 549608418 5.750000e-120 442.0
29 TraesCS1D01G380700 chr1A 86.893 412 18 9 1085 1484 549604007 549604394 4.480000e-116 429.0
30 TraesCS1D01G380700 chr1A 91.968 249 15 3 3313 3557 549605967 549606214 1.670000e-90 344.0
31 TraesCS1D01G380700 chr1A 87.762 286 31 2 3282 3563 549585311 549585026 1.300000e-86 331.0
32 TraesCS1D01G380700 chr1A 82.005 389 51 15 2219 2593 549583507 549583124 4.710000e-81 313.0
33 TraesCS1D01G380700 chr1A 78.987 395 50 6 3152 3546 549619742 549619381 8.100000e-59 239.0
34 TraesCS1D01G380700 chr1A 78.788 198 24 8 1527 1708 549621435 549621240 3.960000e-22 117.0
35 TraesCS1D01G380700 chr1A 88.571 70 8 0 248 317 549603285 549603354 1.120000e-12 86.1
36 TraesCS1D01G380700 chr3B 82.687 335 55 3 3573 3905 43046096 43045763 1.710000e-75 294.0
37 TraesCS1D01G380700 chr3B 82.143 168 21 4 713 878 641832024 641832184 1.090000e-27 135.0
38 TraesCS1D01G380700 chr3B 81.657 169 23 5 704 871 119421996 119421835 3.930000e-27 134.0
39 TraesCS1D01G380700 chr3D 88.398 181 21 0 68 248 4867859 4868039 1.060000e-52 219.0
40 TraesCS1D01G380700 chr7D 82.520 246 43 0 2 247 589518307 589518552 3.800000e-52 217.0
41 TraesCS1D01G380700 chrUn 77.363 402 54 25 1137 1513 334868825 334869214 2.960000e-48 204.0
42 TraesCS1D01G380700 chrUn 80.473 169 21 5 708 871 100185217 100185056 1.100000e-22 119.0
43 TraesCS1D01G380700 chr2B 79.537 259 41 5 2 249 654329157 654329414 2.320000e-39 174.0
44 TraesCS1D01G380700 chr2B 83.333 174 21 5 703 875 509995329 509995495 3.020000e-33 154.0
45 TraesCS1D01G380700 chr2D 83.333 174 21 5 703 875 431003972 431004138 3.020000e-33 154.0
46 TraesCS1D01G380700 chr2D 82.759 174 22 6 703 875 431381913 431382079 1.400000e-31 148.0
47 TraesCS1D01G380700 chr2D 81.081 111 19 2 1188 1297 5085916 5085807 3.110000e-13 87.9
48 TraesCS1D01G380700 chr7A 83.333 162 18 7 712 871 56246143 56246297 2.350000e-29 141.0
49 TraesCS1D01G380700 chr2A 81.982 111 18 2 1188 1297 3102637 3102746 6.680000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G380700 chr1D 456059150 456065404 6254 False 4105.666667 11551 90.110667 1 6255 3 chr1D.!!$F1 6254
1 TraesCS1D01G380700 chr1D 456031978 456035263 3285 True 648.800000 1626 85.797000 868 3687 5 chr1D.!!$R1 2819
2 TraesCS1D01G380700 chr1B 626509912 626516370 6458 False 1694.200000 4518 89.620600 296 6255 5 chr1B.!!$F2 5959
3 TraesCS1D01G380700 chr1B 626497141 626500469 3328 True 654.250000 745 88.925750 1043 4286 4 chr1B.!!$R1 3243
4 TraesCS1D01G380700 chr1A 549603285 549608418 5133 False 949.871429 2846 90.982286 248 5625 7 chr1A.!!$F1 5377
5 TraesCS1D01G380700 chr1A 549583124 549590038 6914 True 823.400000 2154 84.815400 875 4286 5 chr1A.!!$R1 3411
6 TraesCS1D01G380700 chr1A 549618601 549622494 3893 True 648.333333 1991 83.485000 877 4372 6 chr1A.!!$R2 3495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.030638 CAGGAAAAGCCACCAACGTG 59.969 55.0 0.0 0.00 40.02 4.49 F
984 1095 0.179000 CCAATTGTCTAGCGGCCTCT 59.821 55.0 0.0 0.00 0.00 3.69 F
1668 2361 0.035820 TTGGGGTGACGATAACCTGC 60.036 55.0 0.0 0.00 37.85 4.85 F
3454 7053 0.321122 AAGTGGAGGCAGAAGCGAAG 60.321 55.0 0.0 0.00 43.41 3.79 F
3473 7072 1.123655 GAAAGCAGTGCAAACGCTTC 58.876 50.0 19.2 6.16 44.93 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1696 2.472695 TCAACACAAATAGCTCCGCT 57.527 45.0 0.0 0.0 43.41 5.52 R
2978 6564 0.825010 GCCCCATGATCCGCATTCTT 60.825 55.0 0.0 0.0 34.15 2.52 R
3531 7130 0.962356 CCCCACTTCTGCTCGCAATT 60.962 55.0 0.0 0.0 0.00 2.32 R
4661 8632 0.036010 CGATGCTCTGGTCAGGGTTT 60.036 55.0 0.0 0.0 0.00 3.27 R
5357 9373 0.610174 ATCCCCGATCATCATCCACG 59.390 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.592070 TGAGCCGGTCGAGAGAAG 58.408 61.111 1.90 0.00 45.01 2.85
18 19 2.103340 GAGCCGGTCGAGAGAAGC 59.897 66.667 1.90 0.00 45.01 3.86
19 20 2.361865 AGCCGGTCGAGAGAAGCT 60.362 61.111 1.90 0.00 45.01 3.74
20 21 2.202676 GCCGGTCGAGAGAAGCTG 60.203 66.667 1.90 0.00 45.01 4.24
21 22 2.202676 CCGGTCGAGAGAAGCTGC 60.203 66.667 0.00 0.00 45.01 5.25
22 23 2.578178 CGGTCGAGAGAAGCTGCG 60.578 66.667 0.00 0.00 45.01 5.18
23 24 2.883253 GGTCGAGAGAAGCTGCGC 60.883 66.667 0.00 0.00 45.01 6.09
24 25 3.243892 GTCGAGAGAAGCTGCGCG 61.244 66.667 0.00 0.00 45.01 6.86
25 26 4.482684 TCGAGAGAAGCTGCGCGG 62.483 66.667 13.18 13.18 37.03 6.46
35 36 3.499737 CTGCGCGGCCCTGTTTAG 61.500 66.667 8.83 0.00 0.00 1.85
38 39 3.499737 CGCGGCCCTGTTTAGCAG 61.500 66.667 0.00 0.00 44.63 4.24
39 40 2.359975 GCGGCCCTGTTTAGCAGT 60.360 61.111 0.00 0.00 43.55 4.40
40 41 2.690778 GCGGCCCTGTTTAGCAGTG 61.691 63.158 0.00 0.00 43.55 3.66
41 42 1.003839 CGGCCCTGTTTAGCAGTGA 60.004 57.895 0.00 0.00 43.55 3.41
42 43 1.021390 CGGCCCTGTTTAGCAGTGAG 61.021 60.000 0.00 0.00 43.55 3.51
43 44 0.324943 GGCCCTGTTTAGCAGTGAGA 59.675 55.000 0.00 0.00 43.55 3.27
44 45 1.443802 GCCCTGTTTAGCAGTGAGAC 58.556 55.000 0.00 0.00 43.55 3.36
45 46 1.270839 GCCCTGTTTAGCAGTGAGACA 60.271 52.381 0.00 0.00 43.55 3.41
46 47 2.810400 GCCCTGTTTAGCAGTGAGACAA 60.810 50.000 0.00 0.00 43.55 3.18
47 48 3.476552 CCCTGTTTAGCAGTGAGACAAA 58.523 45.455 0.00 0.00 43.55 2.83
48 49 4.074970 CCCTGTTTAGCAGTGAGACAAAT 58.925 43.478 0.00 0.00 43.55 2.32
49 50 5.245531 CCCTGTTTAGCAGTGAGACAAATA 58.754 41.667 0.00 0.00 43.55 1.40
50 51 5.352569 CCCTGTTTAGCAGTGAGACAAATAG 59.647 44.000 0.00 0.00 43.55 1.73
51 52 5.163814 CCTGTTTAGCAGTGAGACAAATAGC 60.164 44.000 0.00 0.00 43.55 2.97
52 53 4.695455 TGTTTAGCAGTGAGACAAATAGCC 59.305 41.667 0.00 0.00 0.00 3.93
53 54 4.551702 TTAGCAGTGAGACAAATAGCCA 57.448 40.909 0.00 0.00 0.00 4.75
54 55 2.983229 AGCAGTGAGACAAATAGCCAG 58.017 47.619 0.00 0.00 0.00 4.85
55 56 2.012673 GCAGTGAGACAAATAGCCAGG 58.987 52.381 0.00 0.00 0.00 4.45
56 57 2.355108 GCAGTGAGACAAATAGCCAGGA 60.355 50.000 0.00 0.00 0.00 3.86
57 58 3.869912 GCAGTGAGACAAATAGCCAGGAA 60.870 47.826 0.00 0.00 0.00 3.36
58 59 4.326826 CAGTGAGACAAATAGCCAGGAAA 58.673 43.478 0.00 0.00 0.00 3.13
59 60 4.761739 CAGTGAGACAAATAGCCAGGAAAA 59.238 41.667 0.00 0.00 0.00 2.29
60 61 5.006386 AGTGAGACAAATAGCCAGGAAAAG 58.994 41.667 0.00 0.00 0.00 2.27
61 62 3.758554 TGAGACAAATAGCCAGGAAAAGC 59.241 43.478 0.00 0.00 0.00 3.51
62 63 3.092301 AGACAAATAGCCAGGAAAAGCC 58.908 45.455 0.00 0.00 0.00 4.35
63 64 2.825532 GACAAATAGCCAGGAAAAGCCA 59.174 45.455 0.00 0.00 40.02 4.75
64 65 2.562738 ACAAATAGCCAGGAAAAGCCAC 59.437 45.455 0.00 0.00 40.02 5.01
65 66 1.852633 AATAGCCAGGAAAAGCCACC 58.147 50.000 0.00 0.00 40.02 4.61
66 67 0.704076 ATAGCCAGGAAAAGCCACCA 59.296 50.000 0.00 0.00 40.02 4.17
67 68 0.480690 TAGCCAGGAAAAGCCACCAA 59.519 50.000 0.00 0.00 40.02 3.67
68 69 1.115326 AGCCAGGAAAAGCCACCAAC 61.115 55.000 0.00 0.00 40.02 3.77
69 70 1.659794 CCAGGAAAAGCCACCAACG 59.340 57.895 0.00 0.00 40.02 4.10
70 71 1.106944 CCAGGAAAAGCCACCAACGT 61.107 55.000 0.00 0.00 40.02 3.99
71 72 0.030638 CAGGAAAAGCCACCAACGTG 59.969 55.000 0.00 0.00 40.02 4.49
79 80 3.979789 CACCAACGTGGCATGCTA 58.020 55.556 18.92 9.16 42.67 3.49
80 81 1.796151 CACCAACGTGGCATGCTAG 59.204 57.895 18.92 11.53 42.67 3.42
81 82 2.040544 ACCAACGTGGCATGCTAGC 61.041 57.895 18.92 8.10 42.67 3.42
82 83 1.746615 CCAACGTGGCATGCTAGCT 60.747 57.895 18.92 0.00 34.17 3.32
83 84 1.426621 CAACGTGGCATGCTAGCTG 59.573 57.895 18.92 12.50 34.17 4.24
84 85 1.746615 AACGTGGCATGCTAGCTGG 60.747 57.895 18.92 9.03 34.17 4.85
85 86 2.184020 AACGTGGCATGCTAGCTGGA 62.184 55.000 18.92 0.00 34.17 3.86
86 87 1.450134 CGTGGCATGCTAGCTGGAA 60.450 57.895 18.92 0.00 34.17 3.53
87 88 1.709147 CGTGGCATGCTAGCTGGAAC 61.709 60.000 18.92 7.12 34.17 3.62
88 89 0.677731 GTGGCATGCTAGCTGGAACA 60.678 55.000 18.92 5.97 34.17 3.18
102 103 2.582052 TGGAACAGACAATTGTGACCC 58.418 47.619 17.58 10.00 31.61 4.46
103 104 2.092158 TGGAACAGACAATTGTGACCCA 60.092 45.455 17.58 12.38 31.61 4.51
104 105 2.293399 GGAACAGACAATTGTGACCCAC 59.707 50.000 17.58 0.00 34.56 4.61
105 106 2.727123 ACAGACAATTGTGACCCACA 57.273 45.000 17.58 0.00 43.02 4.17
115 116 3.678921 TGACCCACAAGTCAGAACG 57.321 52.632 0.00 0.00 41.78 3.95
116 117 0.531974 TGACCCACAAGTCAGAACGC 60.532 55.000 0.00 0.00 41.78 4.84
117 118 0.249911 GACCCACAAGTCAGAACGCT 60.250 55.000 0.00 0.00 36.73 5.07
118 119 0.249911 ACCCACAAGTCAGAACGCTC 60.250 55.000 0.00 0.00 0.00 5.03
119 120 0.249868 CCCACAAGTCAGAACGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
120 121 0.861837 CCACAAGTCAGAACGCTCAC 59.138 55.000 0.00 0.00 0.00 3.51
121 122 1.570813 CACAAGTCAGAACGCTCACA 58.429 50.000 0.00 0.00 0.00 3.58
122 123 1.933181 CACAAGTCAGAACGCTCACAA 59.067 47.619 0.00 0.00 0.00 3.33
123 124 2.351418 CACAAGTCAGAACGCTCACAAA 59.649 45.455 0.00 0.00 0.00 2.83
124 125 3.006940 ACAAGTCAGAACGCTCACAAAA 58.993 40.909 0.00 0.00 0.00 2.44
125 126 3.181510 ACAAGTCAGAACGCTCACAAAAC 60.182 43.478 0.00 0.00 0.00 2.43
126 127 2.906354 AGTCAGAACGCTCACAAAACT 58.094 42.857 0.00 0.00 0.00 2.66
127 128 3.270877 AGTCAGAACGCTCACAAAACTT 58.729 40.909 0.00 0.00 0.00 2.66
128 129 3.689649 AGTCAGAACGCTCACAAAACTTT 59.310 39.130 0.00 0.00 0.00 2.66
129 130 4.873827 AGTCAGAACGCTCACAAAACTTTA 59.126 37.500 0.00 0.00 0.00 1.85
130 131 5.353123 AGTCAGAACGCTCACAAAACTTTAA 59.647 36.000 0.00 0.00 0.00 1.52
131 132 6.025280 GTCAGAACGCTCACAAAACTTTAAA 58.975 36.000 0.00 0.00 0.00 1.52
132 133 6.691388 GTCAGAACGCTCACAAAACTTTAAAT 59.309 34.615 0.00 0.00 0.00 1.40
133 134 6.690957 TCAGAACGCTCACAAAACTTTAAATG 59.309 34.615 0.00 0.00 0.00 2.32
134 135 5.977129 AGAACGCTCACAAAACTTTAAATGG 59.023 36.000 0.00 0.00 0.00 3.16
135 136 4.616953 ACGCTCACAAAACTTTAAATGGG 58.383 39.130 0.00 0.00 0.00 4.00
136 137 3.987220 CGCTCACAAAACTTTAAATGGGG 59.013 43.478 0.00 0.00 0.00 4.96
137 138 4.500716 CGCTCACAAAACTTTAAATGGGGT 60.501 41.667 0.00 0.00 0.00 4.95
138 139 5.278561 CGCTCACAAAACTTTAAATGGGGTA 60.279 40.000 0.00 0.00 0.00 3.69
139 140 6.517605 GCTCACAAAACTTTAAATGGGGTAA 58.482 36.000 0.00 0.00 0.00 2.85
140 141 6.987404 GCTCACAAAACTTTAAATGGGGTAAA 59.013 34.615 0.00 0.00 0.00 2.01
141 142 7.659799 GCTCACAAAACTTTAAATGGGGTAAAT 59.340 33.333 0.00 0.00 0.00 1.40
142 143 9.554395 CTCACAAAACTTTAAATGGGGTAAATT 57.446 29.630 0.00 0.00 0.00 1.82
152 153 9.930693 TTTAAATGGGGTAAATTATGACAACAC 57.069 29.630 0.00 0.00 0.00 3.32
153 154 7.790782 AAATGGGGTAAATTATGACAACACT 57.209 32.000 0.00 0.00 0.00 3.55
154 155 8.887264 AAATGGGGTAAATTATGACAACACTA 57.113 30.769 0.00 0.00 0.00 2.74
155 156 9.487442 AAATGGGGTAAATTATGACAACACTAT 57.513 29.630 0.00 0.00 0.00 2.12
156 157 9.487442 AATGGGGTAAATTATGACAACACTATT 57.513 29.630 0.00 0.00 0.00 1.73
157 158 8.514330 TGGGGTAAATTATGACAACACTATTC 57.486 34.615 0.00 0.00 0.00 1.75
158 159 8.333235 TGGGGTAAATTATGACAACACTATTCT 58.667 33.333 0.00 0.00 0.00 2.40
159 160 9.185680 GGGGTAAATTATGACAACACTATTCTT 57.814 33.333 0.00 0.00 0.00 2.52
167 168 7.645058 ATGACAACACTATTCTTAAATGGGG 57.355 36.000 0.00 0.00 33.24 4.96
168 169 6.548321 TGACAACACTATTCTTAAATGGGGT 58.452 36.000 0.00 0.00 41.31 4.95
169 170 7.691213 TGACAACACTATTCTTAAATGGGGTA 58.309 34.615 0.00 0.00 38.88 3.69
170 171 8.164733 TGACAACACTATTCTTAAATGGGGTAA 58.835 33.333 0.00 0.00 38.88 2.85
171 172 8.943594 ACAACACTATTCTTAAATGGGGTAAA 57.056 30.769 0.00 0.00 38.88 2.01
172 173 9.369672 ACAACACTATTCTTAAATGGGGTAAAA 57.630 29.630 0.00 0.00 38.88 1.52
173 174 9.634163 CAACACTATTCTTAAATGGGGTAAAAC 57.366 33.333 0.00 0.00 38.88 2.43
174 175 8.943594 ACACTATTCTTAAATGGGGTAAAACA 57.056 30.769 0.00 0.00 38.13 2.83
175 176 9.020731 ACACTATTCTTAAATGGGGTAAAACAG 57.979 33.333 0.00 0.00 38.13 3.16
176 177 7.973944 CACTATTCTTAAATGGGGTAAAACAGC 59.026 37.037 0.00 0.00 0.00 4.40
177 178 7.893833 ACTATTCTTAAATGGGGTAAAACAGCT 59.106 33.333 0.00 0.00 0.00 4.24
178 179 5.975693 TCTTAAATGGGGTAAAACAGCTG 57.024 39.130 13.48 13.48 0.00 4.24
179 180 5.636123 TCTTAAATGGGGTAAAACAGCTGA 58.364 37.500 23.35 0.00 0.00 4.26
180 181 6.071984 TCTTAAATGGGGTAAAACAGCTGAA 58.928 36.000 23.35 0.00 0.00 3.02
181 182 6.551601 TCTTAAATGGGGTAAAACAGCTGAAA 59.448 34.615 23.35 0.00 0.00 2.69
182 183 5.622346 AAATGGGGTAAAACAGCTGAAAA 57.378 34.783 23.35 0.00 0.00 2.29
183 184 4.600692 ATGGGGTAAAACAGCTGAAAAC 57.399 40.909 23.35 12.21 0.00 2.43
184 185 3.637769 TGGGGTAAAACAGCTGAAAACT 58.362 40.909 23.35 2.25 0.00 2.66
185 186 3.634910 TGGGGTAAAACAGCTGAAAACTC 59.365 43.478 23.35 12.19 0.00 3.01
186 187 3.634910 GGGGTAAAACAGCTGAAAACTCA 59.365 43.478 23.35 0.00 0.00 3.41
187 188 4.499188 GGGGTAAAACAGCTGAAAACTCAC 60.499 45.833 23.35 8.19 0.00 3.51
188 189 4.338400 GGGTAAAACAGCTGAAAACTCACT 59.662 41.667 23.35 0.00 0.00 3.41
189 190 5.529800 GGGTAAAACAGCTGAAAACTCACTA 59.470 40.000 23.35 0.00 0.00 2.74
190 191 6.038936 GGGTAAAACAGCTGAAAACTCACTAA 59.961 38.462 23.35 0.00 0.00 2.24
191 192 7.415877 GGGTAAAACAGCTGAAAACTCACTAAA 60.416 37.037 23.35 0.00 0.00 1.85
192 193 8.135529 GGTAAAACAGCTGAAAACTCACTAAAT 58.864 33.333 23.35 0.00 0.00 1.40
195 196 7.440523 AACAGCTGAAAACTCACTAAATAGG 57.559 36.000 23.35 0.00 0.00 2.57
196 197 5.940470 ACAGCTGAAAACTCACTAAATAGGG 59.060 40.000 23.35 0.00 0.00 3.53
197 198 5.940470 CAGCTGAAAACTCACTAAATAGGGT 59.060 40.000 8.42 0.00 0.00 4.34
198 199 7.103641 CAGCTGAAAACTCACTAAATAGGGTA 58.896 38.462 8.42 0.00 0.00 3.69
199 200 7.278868 CAGCTGAAAACTCACTAAATAGGGTAG 59.721 40.741 8.42 0.00 0.00 3.18
200 201 7.038231 AGCTGAAAACTCACTAAATAGGGTAGT 60.038 37.037 0.00 0.00 31.85 2.73
201 202 7.606839 GCTGAAAACTCACTAAATAGGGTAGTT 59.393 37.037 0.00 0.00 32.41 2.24
215 216 9.582648 AAATAGGGTAGTTAGTGTCAAAAATGT 57.417 29.630 0.00 0.00 0.00 2.71
216 217 8.788325 ATAGGGTAGTTAGTGTCAAAAATGTC 57.212 34.615 0.00 0.00 0.00 3.06
217 218 6.597562 AGGGTAGTTAGTGTCAAAAATGTCA 58.402 36.000 0.00 0.00 0.00 3.58
218 219 7.057894 AGGGTAGTTAGTGTCAAAAATGTCAA 58.942 34.615 0.00 0.00 0.00 3.18
219 220 7.558444 AGGGTAGTTAGTGTCAAAAATGTCAAA 59.442 33.333 0.00 0.00 0.00 2.69
220 221 8.192110 GGGTAGTTAGTGTCAAAAATGTCAAAA 58.808 33.333 0.00 0.00 0.00 2.44
221 222 9.016623 GGTAGTTAGTGTCAAAAATGTCAAAAC 57.983 33.333 0.00 0.00 0.00 2.43
222 223 9.562583 GTAGTTAGTGTCAAAAATGTCAAAACA 57.437 29.630 0.00 0.00 40.38 2.83
223 224 8.687824 AGTTAGTGTCAAAAATGTCAAAACAG 57.312 30.769 0.00 0.00 39.20 3.16
224 225 7.759433 AGTTAGTGTCAAAAATGTCAAAACAGG 59.241 33.333 0.00 0.00 39.20 4.00
225 226 5.418676 AGTGTCAAAAATGTCAAAACAGGG 58.581 37.500 0.00 0.00 39.20 4.45
226 227 4.570369 GTGTCAAAAATGTCAAAACAGGGG 59.430 41.667 0.00 0.00 39.20 4.79
227 228 4.467795 TGTCAAAAATGTCAAAACAGGGGA 59.532 37.500 0.00 0.00 39.20 4.81
228 229 5.130145 TGTCAAAAATGTCAAAACAGGGGAT 59.870 36.000 0.00 0.00 39.20 3.85
229 230 6.325028 TGTCAAAAATGTCAAAACAGGGGATA 59.675 34.615 0.00 0.00 39.20 2.59
230 231 7.147655 TGTCAAAAATGTCAAAACAGGGGATAA 60.148 33.333 0.00 0.00 39.20 1.75
231 232 7.713073 GTCAAAAATGTCAAAACAGGGGATAAA 59.287 33.333 0.00 0.00 39.20 1.40
232 233 8.267894 TCAAAAATGTCAAAACAGGGGATAAAA 58.732 29.630 0.00 0.00 39.20 1.52
233 234 8.341903 CAAAAATGTCAAAACAGGGGATAAAAC 58.658 33.333 0.00 0.00 39.20 2.43
234 235 5.738619 ATGTCAAAACAGGGGATAAAACC 57.261 39.130 0.00 0.00 39.20 3.27
245 246 3.628008 GGGATAAAACCCGGAATTCACT 58.372 45.455 0.73 0.00 40.49 3.41
246 247 3.630769 GGGATAAAACCCGGAATTCACTC 59.369 47.826 0.73 0.00 40.49 3.51
257 258 5.344884 CCGGAATTCACTCTTTAGTCTCTC 58.655 45.833 7.93 0.00 31.97 3.20
262 263 7.544217 GGAATTCACTCTTTAGTCTCTCTTGTC 59.456 40.741 7.93 0.00 31.97 3.18
266 267 5.242838 CACTCTTTAGTCTCTCTTGTCAGGT 59.757 44.000 0.00 0.00 31.97 4.00
267 268 5.475564 ACTCTTTAGTCTCTCTTGTCAGGTC 59.524 44.000 0.00 0.00 0.00 3.85
299 362 5.291905 TGTCTCGTAGGACTGAGATATGA 57.708 43.478 0.00 0.00 42.73 2.15
307 370 4.357325 AGGACTGAGATATGAGTGTTGGT 58.643 43.478 0.00 0.00 0.00 3.67
324 387 3.667497 TGGTTCTTGTTTTGTGTTGCA 57.333 38.095 0.00 0.00 0.00 4.08
339 408 3.620821 GTGTTGCAGAGAAAGCTAGGATC 59.379 47.826 0.00 0.00 0.00 3.36
400 469 5.927689 CAGTGCTGAATTGCTTTATTCCAAA 59.072 36.000 0.00 0.00 34.34 3.28
411 480 7.225784 TGCTTTATTCCAAACTTTGAGCATA 57.774 32.000 2.87 0.00 30.96 3.14
464 533 2.483877 GTCGATTTCACAAGTGGCATGA 59.516 45.455 0.00 0.00 0.00 3.07
507 576 6.831976 AGTGAGTCAGGAGAACAAGTTTATT 58.168 36.000 0.00 0.00 0.00 1.40
508 577 7.963532 AGTGAGTCAGGAGAACAAGTTTATTA 58.036 34.615 0.00 0.00 0.00 0.98
509 578 7.873505 AGTGAGTCAGGAGAACAAGTTTATTAC 59.126 37.037 0.00 0.00 0.00 1.89
510 579 7.873505 GTGAGTCAGGAGAACAAGTTTATTACT 59.126 37.037 0.00 0.00 39.32 2.24
511 580 7.872993 TGAGTCAGGAGAACAAGTTTATTACTG 59.127 37.037 0.00 0.00 37.12 2.74
573 642 8.846211 AGAATTTTGAGTCGGAACTAAATTTCA 58.154 29.630 14.21 0.00 35.37 2.69
664 735 6.422701 TGGCCAATATAAGAGAAATTACGACG 59.577 38.462 0.61 0.00 0.00 5.12
688 759 9.106070 ACGGTACTAAAATTTAAAGAGGCATAG 57.894 33.333 7.31 0.00 0.00 2.23
709 780 9.757227 GCATAGTGAATCAGTATTTTCTACTCT 57.243 33.333 7.81 0.00 28.65 3.24
714 785 7.646130 GTGAATCAGTATTTTCTACTCTCTCCG 59.354 40.741 0.00 0.00 0.00 4.63
815 887 9.941664 AATTCACTCATTTTGCTTCTTATATCG 57.058 29.630 0.00 0.00 0.00 2.92
888 967 7.602868 AGGGAGTATACTTTTAGGTATCAGGT 58.397 38.462 6.88 0.00 34.65 4.00
963 1074 2.875296 AGAGTGACTGAGCTGTCTTCT 58.125 47.619 0.00 0.00 37.79 2.85
969 1080 2.235898 GACTGAGCTGTCTTCTCCCAAT 59.764 50.000 0.00 0.00 34.39 3.16
975 1086 3.840666 AGCTGTCTTCTCCCAATTGTCTA 59.159 43.478 4.43 0.00 0.00 2.59
984 1095 0.179000 CCAATTGTCTAGCGGCCTCT 59.821 55.000 0.00 0.00 0.00 3.69
985 1096 1.407437 CCAATTGTCTAGCGGCCTCTT 60.407 52.381 0.00 0.00 0.00 2.85
1098 1250 6.038161 ACACGAGATTGAGAAAAATCAACACA 59.962 34.615 0.00 0.00 41.76 3.72
1128 1280 0.302890 GAATCGATGAGTTGCGGCTG 59.697 55.000 0.00 0.00 0.00 4.85
1279 1437 1.361668 CCCGCGACAAGATCAACCAG 61.362 60.000 8.23 0.00 0.00 4.00
1343 1517 4.081586 CCTCTTACGCTTAGGGTTTTCTCT 60.082 45.833 7.35 0.00 0.00 3.10
1346 1520 2.779506 ACGCTTAGGGTTTTCTCTTGG 58.220 47.619 0.00 0.00 0.00 3.61
1489 1665 1.542547 GCCCCTCTTTCGTTTCTGTCA 60.543 52.381 0.00 0.00 0.00 3.58
1492 1672 3.437049 CCCCTCTTTCGTTTCTGTCAATC 59.563 47.826 0.00 0.00 0.00 2.67
1513 1693 9.058174 TCAATCGATATTTCGGCCTAAATTTAA 57.942 29.630 19.31 3.58 45.53 1.52
1514 1694 9.840427 CAATCGATATTTCGGCCTAAATTTAAT 57.160 29.630 19.31 8.15 45.53 1.40
1563 2177 2.927580 GCTGCAATGCTGTGCCTGT 61.928 57.895 13.44 0.00 44.26 4.00
1668 2361 0.035820 TTGGGGTGACGATAACCTGC 60.036 55.000 0.00 0.00 37.85 4.85
1725 2421 0.473755 TGCTGCCTTCTCTGTCCAAA 59.526 50.000 0.00 0.00 0.00 3.28
1929 2634 3.569701 GCACAACTGAAGGAAGATGGAAA 59.430 43.478 0.00 0.00 0.00 3.13
2059 2764 2.293170 GATAAGGAAGCCACTGAAGCC 58.707 52.381 0.00 0.00 0.00 4.35
2564 3589 2.831526 ACATTGCCCCATACTTGTTTCC 59.168 45.455 0.00 0.00 0.00 3.13
2800 6360 3.756230 TATTCACACCCTCCCCCTCCC 62.756 61.905 0.00 0.00 0.00 4.30
2801 6361 4.354943 CACACCCTCCCCCTCCCT 62.355 72.222 0.00 0.00 0.00 4.20
2802 6362 4.026357 ACACCCTCCCCCTCCCTC 62.026 72.222 0.00 0.00 0.00 4.30
2803 6363 3.700350 CACCCTCCCCCTCCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
2804 6364 3.369388 ACCCTCCCCCTCCCTCTC 61.369 72.222 0.00 0.00 0.00 3.20
2805 6365 4.179599 CCCTCCCCCTCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
2866 6446 1.876156 AGCTGAAAAGCTTTCTGTCCG 59.124 47.619 13.10 4.39 43.52 4.79
2867 6447 1.873591 GCTGAAAAGCTTTCTGTCCGA 59.126 47.619 13.10 0.00 0.00 4.55
2871 6451 5.334879 GCTGAAAAGCTTTCTGTCCGATTTA 60.335 40.000 13.10 0.00 0.00 1.40
2872 6452 6.627395 TGAAAAGCTTTCTGTCCGATTTAA 57.373 33.333 13.10 0.00 0.00 1.52
2878 6464 4.346129 CTTTCTGTCCGATTTAAGCATGC 58.654 43.478 10.51 10.51 0.00 4.06
2910 6496 6.421377 TTCTTGATCATTGTGTTGTATCCG 57.579 37.500 0.00 0.00 0.00 4.18
2929 6515 8.347771 TGTATCCGTACTCATGTGTCTTTATAC 58.652 37.037 3.19 9.22 0.00 1.47
2960 6546 3.512724 ACAATCCAAGGAAGCTGGAAATG 59.487 43.478 0.00 1.98 45.96 2.32
2967 6553 3.690460 AGGAAGCTGGAAATGTTGTAGG 58.310 45.455 0.00 0.00 0.00 3.18
3010 6596 0.920763 ATGGGGCCATCACAGGAGAA 60.921 55.000 4.39 0.00 29.42 2.87
3227 6823 1.761784 AGCAGAATGTAGAGGAGCTGG 59.238 52.381 0.00 0.00 39.31 4.85
3366 6962 2.170187 AGAATGTAGAGGAGCTGCAAGG 59.830 50.000 8.35 0.00 42.63 3.61
3451 7050 1.743252 GGAAGTGGAGGCAGAAGCG 60.743 63.158 0.00 0.00 43.41 4.68
3454 7053 0.321122 AAGTGGAGGCAGAAGCGAAG 60.321 55.000 0.00 0.00 43.41 3.79
3473 7072 1.123655 GAAAGCAGTGCAAACGCTTC 58.876 50.000 19.20 6.16 44.93 3.86
3531 7130 6.456853 CGAAATAAAGATGACGAGATTGGCAA 60.457 38.462 0.68 0.68 0.00 4.52
3892 7759 6.931281 CCATATTGTATGTCTAGTGACCTTGG 59.069 42.308 0.00 0.00 42.28 3.61
3930 7844 9.391006 TCCTTGATCAAGTGTAACCATAATTAC 57.609 33.333 29.03 0.00 37.80 1.89
4166 8104 7.385752 CACGAACTAATGGTAAACTTGGTTAGA 59.614 37.037 0.00 0.00 0.00 2.10
4209 8147 6.434028 TGCAGTGCCATCTTTTATAGAAACTT 59.566 34.615 13.72 0.00 36.22 2.66
4215 8153 9.832445 TGCCATCTTTTATAGAAACTTAGTAGG 57.168 33.333 0.00 0.00 36.22 3.18
4217 8155 9.832445 CCATCTTTTATAGAAACTTAGTAGGCA 57.168 33.333 0.00 0.00 36.22 4.75
4259 8197 4.157840 ACAATAAGATGCCCGTTTCTTTCC 59.842 41.667 0.00 0.00 34.22 3.13
4328 8297 4.003648 GTGGTCCCAATCATCCGATTATC 58.996 47.826 0.00 0.00 39.96 1.75
4375 8346 4.826733 TGTTTGGCACATAACATTGTCTCT 59.173 37.500 0.00 0.00 39.30 3.10
4654 8625 2.983592 GGTGGTGGTTGCGAAGGG 60.984 66.667 0.00 0.00 0.00 3.95
4661 8632 4.011517 GTTGCGAAGGGGGACGGA 62.012 66.667 0.00 0.00 0.00 4.69
4696 8667 2.398498 CATCGCTGGTACTACTGATGC 58.602 52.381 0.00 0.00 0.00 3.91
4720 8691 0.605319 GGTGGGCTCGACATTGACAA 60.605 55.000 0.00 0.00 0.00 3.18
4821 8792 1.006832 CAACGCGGATAAGGAAGGTG 58.993 55.000 12.47 0.00 0.00 4.00
4977 8948 1.743394 GCAACATAGGTGTGTTAGGCC 59.257 52.381 0.00 0.00 40.17 5.19
5160 9133 0.401105 ATGGCAGATGGAGGCTAGGT 60.401 55.000 0.00 0.00 0.00 3.08
5169 9142 0.176910 GGAGGCTAGGTCTCAAGCAC 59.823 60.000 1.63 0.00 40.61 4.40
5186 9159 2.773661 AGCACTGTATCACCCATGATGA 59.226 45.455 0.00 0.00 45.54 2.92
5187 9160 3.393609 AGCACTGTATCACCCATGATGAT 59.606 43.478 14.52 14.52 45.54 2.45
5189 9162 4.711399 CACTGTATCACCCATGATGATGT 58.289 43.478 17.88 8.35 45.54 3.06
5190 9163 4.514066 CACTGTATCACCCATGATGATGTG 59.486 45.833 17.88 14.24 45.54 3.21
5209 9183 1.304381 GGAAAGGGTGCTGGCATCA 60.304 57.895 8.14 0.00 0.00 3.07
5224 9198 2.097466 GGCATCACCCTATTTTGTGACG 59.903 50.000 0.00 0.00 43.69 4.35
5230 9204 3.245284 CACCCTATTTTGTGACGATAGCG 59.755 47.826 0.00 0.00 44.79 4.26
5302 9276 1.841556 GACGATCCCCATGGCCCTA 60.842 63.158 6.09 0.00 0.00 3.53
5342 9358 6.942005 TGGATTCTGCTCAAGAGAATTAAACA 59.058 34.615 0.32 0.00 39.72 2.83
5350 9366 8.131100 TGCTCAAGAGAATTAAACAAAACTCTG 58.869 33.333 0.32 0.00 36.07 3.35
5357 9373 7.203218 AGAATTAAACAAAACTCTGCTGAACC 58.797 34.615 0.00 0.00 0.00 3.62
5382 9398 4.144297 GGATGATGATCGGGGATTTCAAA 58.856 43.478 0.00 0.00 0.00 2.69
5439 9457 7.540400 TGCAAAAATGGTCTGAAACATATAACG 59.460 33.333 0.00 0.00 0.00 3.18
5495 9515 1.749033 GATCTCGGCTACCAAGGGG 59.251 63.158 0.00 0.00 41.29 4.79
5497 9517 4.176752 CTCGGCTACCAAGGGGCC 62.177 72.222 13.10 13.10 42.18 5.80
5564 9584 2.224499 TGCAAGGCTTGACAGATGTGTA 60.224 45.455 30.45 0.00 36.88 2.90
5593 9613 3.505680 CCGGAATGGAATGAGTTGTTTCA 59.494 43.478 0.00 0.00 42.00 2.69
5595 9615 4.488879 GGAATGGAATGAGTTGTTTCAGC 58.511 43.478 0.00 0.00 0.00 4.26
5598 9618 3.286353 TGGAATGAGTTGTTTCAGCACA 58.714 40.909 0.00 0.00 0.00 4.57
5613 9633 3.004862 CAGCACACTCATGTTCAGCATA 58.995 45.455 0.00 0.00 36.72 3.14
5616 9636 4.095932 AGCACACTCATGTTCAGCATATTG 59.904 41.667 0.00 0.00 36.72 1.90
5647 9667 2.818130 TTTTTGCAGGGATGTTCAGC 57.182 45.000 0.00 0.00 0.00 4.26
5648 9668 1.702182 TTTTGCAGGGATGTTCAGCA 58.298 45.000 0.00 0.00 0.00 4.41
5653 9673 2.953648 TGCAGGGATGTTCAGCATATTG 59.046 45.455 0.00 0.00 38.06 1.90
5657 9677 5.506317 GCAGGGATGTTCAGCATATTGTTAC 60.506 44.000 0.00 0.00 38.06 2.50
5671 9691 6.074088 GCATATTGTTACCTCAAGATCAGACG 60.074 42.308 0.00 0.00 28.61 4.18
5765 10492 0.033208 TTTGAGGATGGGGTCATGCC 60.033 55.000 0.00 0.00 41.85 4.40
5804 10531 2.167693 CAGTCATAGTGCTAACCCCGAA 59.832 50.000 0.00 0.00 0.00 4.30
5913 10650 4.870221 AAATTACGGCCGTAGTTTGATC 57.130 40.909 40.79 0.00 38.49 2.92
5926 10663 5.643777 CGTAGTTTGATCTCTGAAACCCAAT 59.356 40.000 0.00 0.00 33.34 3.16
5929 10666 5.242393 AGTTTGATCTCTGAAACCCAATGTG 59.758 40.000 0.00 0.00 33.34 3.21
5930 10667 3.084039 TGATCTCTGAAACCCAATGTGC 58.916 45.455 0.00 0.00 0.00 4.57
5940 10677 2.607499 ACCCAATGTGCTTTCATTCCA 58.393 42.857 0.00 0.00 36.10 3.53
5941 10678 2.971330 ACCCAATGTGCTTTCATTCCAA 59.029 40.909 0.00 0.00 36.10 3.53
5943 10680 3.592059 CCAATGTGCTTTCATTCCAAGG 58.408 45.455 0.00 0.00 36.10 3.61
5945 10682 4.081309 CCAATGTGCTTTCATTCCAAGGAT 60.081 41.667 0.00 0.00 36.10 3.24
5955 10692 6.866010 TTCATTCCAAGGATGATGATTACG 57.134 37.500 4.73 0.00 0.00 3.18
5958 10695 4.336889 TCCAAGGATGATGATTACGGAC 57.663 45.455 0.00 0.00 0.00 4.79
5971 10708 7.599998 TGATGATTACGGACAATGTCATCATAG 59.400 37.037 19.98 6.74 43.92 2.23
5976 10713 3.879295 CGGACAATGTCATCATAGCCTTT 59.121 43.478 15.86 0.00 33.68 3.11
5990 10727 6.753180 TCATAGCCTTTGAGTGCTTCTATAG 58.247 40.000 0.00 0.00 39.00 1.31
6004 10741 6.314896 GTGCTTCTATAGAATTCAGCACAACT 59.685 38.462 33.00 3.77 44.68 3.16
6027 10764 1.352622 ACCCACATGACACCCACTGT 61.353 55.000 0.00 0.00 34.96 3.55
6076 11402 2.881513 TGCATACAACCGTGTTGATTGT 59.118 40.909 19.38 5.92 39.30 2.71
6103 11429 0.032615 GAGGGAGCCTTGGAGAGAGA 60.033 60.000 0.00 0.00 31.76 3.10
6105 11431 0.758123 GGGAGCCTTGGAGAGAGATG 59.242 60.000 0.00 0.00 0.00 2.90
6126 11452 5.310409 TGGTTTCAACTCTCTTTGGATCT 57.690 39.130 0.00 0.00 0.00 2.75
6127 11453 6.433847 TGGTTTCAACTCTCTTTGGATCTA 57.566 37.500 0.00 0.00 0.00 1.98
6164 11490 2.159212 TGTGAAGTCCGTTCGTTTCTCA 60.159 45.455 0.00 0.00 38.09 3.27
6177 11505 3.003275 TCGTTTCTCAGTCAAAATGTGGC 59.997 43.478 0.00 0.00 0.00 5.01
6180 11508 3.057969 TCTCAGTCAAAATGTGGCGAT 57.942 42.857 0.00 0.00 36.74 4.58
6186 11514 3.818210 AGTCAAAATGTGGCGATGTGTTA 59.182 39.130 0.00 0.00 36.74 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.701780 GCTTCTCTCGACCGGCTCA 61.702 63.158 0.00 0.00 0.00 4.26
2 3 2.361865 AGCTTCTCTCGACCGGCT 60.362 61.111 0.00 0.00 0.00 5.52
3 4 2.202676 CAGCTTCTCTCGACCGGC 60.203 66.667 0.00 0.00 0.00 6.13
4 5 2.202676 GCAGCTTCTCTCGACCGG 60.203 66.667 0.00 0.00 0.00 5.28
5 6 2.578178 CGCAGCTTCTCTCGACCG 60.578 66.667 0.00 0.00 0.00 4.79
18 19 3.499737 CTAAACAGGGCCGCGCAG 61.500 66.667 8.75 4.11 0.00 5.18
21 22 3.499737 CTGCTAAACAGGGCCGCG 61.500 66.667 0.00 0.00 43.19 6.46
29 30 4.695455 GGCTATTTGTCTCACTGCTAAACA 59.305 41.667 0.00 0.00 0.00 2.83
30 31 4.695455 TGGCTATTTGTCTCACTGCTAAAC 59.305 41.667 0.00 0.00 0.00 2.01
31 32 4.905429 TGGCTATTTGTCTCACTGCTAAA 58.095 39.130 0.00 0.00 0.00 1.85
32 33 4.507710 CTGGCTATTTGTCTCACTGCTAA 58.492 43.478 0.00 0.00 0.00 3.09
33 34 3.118629 CCTGGCTATTTGTCTCACTGCTA 60.119 47.826 0.00 0.00 0.00 3.49
34 35 2.355513 CCTGGCTATTTGTCTCACTGCT 60.356 50.000 0.00 0.00 0.00 4.24
35 36 2.012673 CCTGGCTATTTGTCTCACTGC 58.987 52.381 0.00 0.00 0.00 4.40
36 37 3.616956 TCCTGGCTATTTGTCTCACTG 57.383 47.619 0.00 0.00 0.00 3.66
37 38 4.640771 TTTCCTGGCTATTTGTCTCACT 57.359 40.909 0.00 0.00 0.00 3.41
38 39 4.379918 GCTTTTCCTGGCTATTTGTCTCAC 60.380 45.833 0.00 0.00 0.00 3.51
39 40 3.758554 GCTTTTCCTGGCTATTTGTCTCA 59.241 43.478 0.00 0.00 0.00 3.27
40 41 3.129462 GGCTTTTCCTGGCTATTTGTCTC 59.871 47.826 0.00 0.00 0.00 3.36
41 42 3.092301 GGCTTTTCCTGGCTATTTGTCT 58.908 45.455 0.00 0.00 0.00 3.41
42 43 2.825532 TGGCTTTTCCTGGCTATTTGTC 59.174 45.455 0.00 0.00 35.26 3.18
43 44 2.562738 GTGGCTTTTCCTGGCTATTTGT 59.437 45.455 0.00 0.00 35.26 2.83
44 45 2.094026 GGTGGCTTTTCCTGGCTATTTG 60.094 50.000 0.00 0.00 35.26 2.32
45 46 2.179427 GGTGGCTTTTCCTGGCTATTT 58.821 47.619 0.00 0.00 35.26 1.40
46 47 1.077005 TGGTGGCTTTTCCTGGCTATT 59.923 47.619 0.00 0.00 35.26 1.73
47 48 0.704076 TGGTGGCTTTTCCTGGCTAT 59.296 50.000 0.00 0.00 35.26 2.97
48 49 0.480690 TTGGTGGCTTTTCCTGGCTA 59.519 50.000 0.00 0.00 35.26 3.93
49 50 1.115326 GTTGGTGGCTTTTCCTGGCT 61.115 55.000 0.00 0.00 35.26 4.75
50 51 1.367471 GTTGGTGGCTTTTCCTGGC 59.633 57.895 0.00 0.00 35.26 4.85
51 52 1.106944 ACGTTGGTGGCTTTTCCTGG 61.107 55.000 0.00 0.00 35.26 4.45
52 53 0.030638 CACGTTGGTGGCTTTTCCTG 59.969 55.000 0.00 0.00 40.58 3.86
53 54 2.414750 CACGTTGGTGGCTTTTCCT 58.585 52.632 0.00 0.00 40.58 3.36
62 63 1.796151 CTAGCATGCCACGTTGGTG 59.204 57.895 15.66 0.00 40.46 4.17
63 64 2.040544 GCTAGCATGCCACGTTGGT 61.041 57.895 15.66 0.00 40.46 3.67
64 65 1.746615 AGCTAGCATGCCACGTTGG 60.747 57.895 18.83 0.00 41.55 3.77
65 66 1.426621 CAGCTAGCATGCCACGTTG 59.573 57.895 18.83 7.47 0.00 4.10
66 67 1.746615 CCAGCTAGCATGCCACGTT 60.747 57.895 18.83 0.00 0.00 3.99
67 68 2.124983 CCAGCTAGCATGCCACGT 60.125 61.111 18.83 0.00 0.00 4.49
68 69 1.450134 TTCCAGCTAGCATGCCACG 60.450 57.895 18.83 3.94 0.00 4.94
69 70 0.677731 TGTTCCAGCTAGCATGCCAC 60.678 55.000 18.83 3.83 0.00 5.01
70 71 0.393402 CTGTTCCAGCTAGCATGCCA 60.393 55.000 18.83 0.00 0.00 4.92
71 72 0.107508 TCTGTTCCAGCTAGCATGCC 60.108 55.000 18.83 0.00 0.00 4.40
72 73 1.012841 GTCTGTTCCAGCTAGCATGC 58.987 55.000 18.83 10.51 0.00 4.06
73 74 2.391616 TGTCTGTTCCAGCTAGCATG 57.608 50.000 18.83 11.93 0.00 4.06
74 75 3.641434 ATTGTCTGTTCCAGCTAGCAT 57.359 42.857 18.83 0.00 0.00 3.79
75 76 3.076621 CAATTGTCTGTTCCAGCTAGCA 58.923 45.455 18.83 0.00 0.00 3.49
76 77 3.077359 ACAATTGTCTGTTCCAGCTAGC 58.923 45.455 6.62 6.62 0.00 3.42
77 78 4.153117 GTCACAATTGTCTGTTCCAGCTAG 59.847 45.833 8.48 0.00 0.00 3.42
78 79 4.065088 GTCACAATTGTCTGTTCCAGCTA 58.935 43.478 8.48 0.00 0.00 3.32
79 80 2.880890 GTCACAATTGTCTGTTCCAGCT 59.119 45.455 8.48 0.00 0.00 4.24
80 81 2.030805 GGTCACAATTGTCTGTTCCAGC 60.031 50.000 8.48 0.00 0.00 4.85
81 82 2.554032 GGGTCACAATTGTCTGTTCCAG 59.446 50.000 8.48 0.00 0.00 3.86
82 83 2.092158 TGGGTCACAATTGTCTGTTCCA 60.092 45.455 8.48 9.45 0.00 3.53
83 84 2.293399 GTGGGTCACAATTGTCTGTTCC 59.707 50.000 8.48 7.02 34.08 3.62
84 85 2.948979 TGTGGGTCACAATTGTCTGTTC 59.051 45.455 8.48 0.00 41.69 3.18
85 86 3.011566 TGTGGGTCACAATTGTCTGTT 57.988 42.857 8.48 0.00 41.69 3.16
86 87 2.727123 TGTGGGTCACAATTGTCTGT 57.273 45.000 8.48 0.00 41.69 3.41
95 96 1.472552 CGTTCTGACTTGTGGGTCACA 60.473 52.381 0.00 0.00 43.02 3.58
96 97 1.217882 CGTTCTGACTTGTGGGTCAC 58.782 55.000 0.00 0.00 40.72 3.67
97 98 0.531974 GCGTTCTGACTTGTGGGTCA 60.532 55.000 0.00 0.00 42.96 4.02
98 99 0.249911 AGCGTTCTGACTTGTGGGTC 60.250 55.000 0.00 0.00 36.81 4.46
99 100 0.249911 GAGCGTTCTGACTTGTGGGT 60.250 55.000 0.00 0.00 0.00 4.51
100 101 0.249868 TGAGCGTTCTGACTTGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
101 102 0.861837 GTGAGCGTTCTGACTTGTGG 59.138 55.000 0.00 0.00 0.00 4.17
102 103 1.570813 TGTGAGCGTTCTGACTTGTG 58.429 50.000 0.00 0.00 0.00 3.33
103 104 2.309528 TTGTGAGCGTTCTGACTTGT 57.690 45.000 0.00 0.00 0.00 3.16
104 105 3.063997 AGTTTTGTGAGCGTTCTGACTTG 59.936 43.478 0.00 0.00 0.00 3.16
105 106 3.270877 AGTTTTGTGAGCGTTCTGACTT 58.729 40.909 0.00 0.00 0.00 3.01
106 107 2.906354 AGTTTTGTGAGCGTTCTGACT 58.094 42.857 0.00 0.00 0.00 3.41
107 108 3.675467 AAGTTTTGTGAGCGTTCTGAC 57.325 42.857 0.00 0.00 0.00 3.51
108 109 5.804692 TTAAAGTTTTGTGAGCGTTCTGA 57.195 34.783 0.00 0.00 0.00 3.27
109 110 6.074888 CCATTTAAAGTTTTGTGAGCGTTCTG 60.075 38.462 0.00 0.00 0.00 3.02
110 111 5.977129 CCATTTAAAGTTTTGTGAGCGTTCT 59.023 36.000 0.00 0.00 0.00 3.01
111 112 5.174943 CCCATTTAAAGTTTTGTGAGCGTTC 59.825 40.000 0.00 0.00 0.00 3.95
112 113 5.047188 CCCATTTAAAGTTTTGTGAGCGTT 58.953 37.500 0.00 0.00 0.00 4.84
113 114 4.500716 CCCCATTTAAAGTTTTGTGAGCGT 60.501 41.667 0.00 0.00 0.00 5.07
114 115 3.987220 CCCCATTTAAAGTTTTGTGAGCG 59.013 43.478 0.00 0.00 0.00 5.03
115 116 4.956085 ACCCCATTTAAAGTTTTGTGAGC 58.044 39.130 0.00 0.00 0.00 4.26
116 117 9.554395 AATTTACCCCATTTAAAGTTTTGTGAG 57.446 29.630 0.00 0.00 0.00 3.51
126 127 9.930693 GTGTTGTCATAATTTACCCCATTTAAA 57.069 29.630 0.00 0.00 0.00 1.52
127 128 9.315363 AGTGTTGTCATAATTTACCCCATTTAA 57.685 29.630 0.00 0.00 0.00 1.52
128 129 8.887264 AGTGTTGTCATAATTTACCCCATTTA 57.113 30.769 0.00 0.00 0.00 1.40
129 130 7.790782 AGTGTTGTCATAATTTACCCCATTT 57.209 32.000 0.00 0.00 0.00 2.32
130 131 9.487442 AATAGTGTTGTCATAATTTACCCCATT 57.513 29.630 0.00 0.00 0.00 3.16
131 132 9.131791 GAATAGTGTTGTCATAATTTACCCCAT 57.868 33.333 0.00 0.00 0.00 4.00
132 133 8.333235 AGAATAGTGTTGTCATAATTTACCCCA 58.667 33.333 0.00 0.00 0.00 4.96
133 134 8.747538 AGAATAGTGTTGTCATAATTTACCCC 57.252 34.615 0.00 0.00 0.00 4.95
141 142 9.184523 CCCCATTTAAGAATAGTGTTGTCATAA 57.815 33.333 0.00 0.00 0.00 1.90
142 143 8.333235 ACCCCATTTAAGAATAGTGTTGTCATA 58.667 33.333 0.00 0.00 0.00 2.15
143 144 7.182060 ACCCCATTTAAGAATAGTGTTGTCAT 58.818 34.615 0.00 0.00 0.00 3.06
144 145 6.548321 ACCCCATTTAAGAATAGTGTTGTCA 58.452 36.000 0.00 0.00 0.00 3.58
145 146 8.570068 TTACCCCATTTAAGAATAGTGTTGTC 57.430 34.615 0.00 0.00 0.00 3.18
146 147 8.943594 TTTACCCCATTTAAGAATAGTGTTGT 57.056 30.769 0.00 0.00 0.00 3.32
147 148 9.634163 GTTTTACCCCATTTAAGAATAGTGTTG 57.366 33.333 0.00 0.00 0.00 3.33
148 149 9.369672 TGTTTTACCCCATTTAAGAATAGTGTT 57.630 29.630 0.00 0.00 0.00 3.32
149 150 8.943594 TGTTTTACCCCATTTAAGAATAGTGT 57.056 30.769 0.00 0.00 0.00 3.55
150 151 7.973944 GCTGTTTTACCCCATTTAAGAATAGTG 59.026 37.037 0.00 0.00 0.00 2.74
151 152 7.893833 AGCTGTTTTACCCCATTTAAGAATAGT 59.106 33.333 0.00 0.00 0.00 2.12
152 153 8.190784 CAGCTGTTTTACCCCATTTAAGAATAG 58.809 37.037 5.25 0.00 0.00 1.73
153 154 7.891183 TCAGCTGTTTTACCCCATTTAAGAATA 59.109 33.333 14.67 0.00 0.00 1.75
154 155 6.723977 TCAGCTGTTTTACCCCATTTAAGAAT 59.276 34.615 14.67 0.00 0.00 2.40
155 156 6.071984 TCAGCTGTTTTACCCCATTTAAGAA 58.928 36.000 14.67 0.00 0.00 2.52
156 157 5.636123 TCAGCTGTTTTACCCCATTTAAGA 58.364 37.500 14.67 0.00 0.00 2.10
157 158 5.975693 TCAGCTGTTTTACCCCATTTAAG 57.024 39.130 14.67 0.00 0.00 1.85
158 159 6.732896 TTTCAGCTGTTTTACCCCATTTAA 57.267 33.333 14.67 0.00 0.00 1.52
159 160 6.325286 AGTTTTCAGCTGTTTTACCCCATTTA 59.675 34.615 14.67 0.00 0.00 1.40
160 161 5.130311 AGTTTTCAGCTGTTTTACCCCATTT 59.870 36.000 14.67 0.00 0.00 2.32
161 162 4.653801 AGTTTTCAGCTGTTTTACCCCATT 59.346 37.500 14.67 0.00 0.00 3.16
162 163 4.223144 AGTTTTCAGCTGTTTTACCCCAT 58.777 39.130 14.67 0.00 0.00 4.00
163 164 3.634910 GAGTTTTCAGCTGTTTTACCCCA 59.365 43.478 14.67 0.00 0.00 4.96
164 165 3.634910 TGAGTTTTCAGCTGTTTTACCCC 59.365 43.478 14.67 4.40 0.00 4.95
165 166 4.338400 AGTGAGTTTTCAGCTGTTTTACCC 59.662 41.667 14.67 0.03 32.98 3.69
166 167 5.500645 AGTGAGTTTTCAGCTGTTTTACC 57.499 39.130 14.67 1.51 32.98 2.85
169 170 8.352942 CCTATTTAGTGAGTTTTCAGCTGTTTT 58.647 33.333 14.67 0.00 32.98 2.43
170 171 7.040409 CCCTATTTAGTGAGTTTTCAGCTGTTT 60.040 37.037 14.67 0.00 32.98 2.83
171 172 6.431234 CCCTATTTAGTGAGTTTTCAGCTGTT 59.569 38.462 14.67 0.00 32.98 3.16
172 173 5.940470 CCCTATTTAGTGAGTTTTCAGCTGT 59.060 40.000 14.67 0.00 32.98 4.40
173 174 5.940470 ACCCTATTTAGTGAGTTTTCAGCTG 59.060 40.000 7.63 7.63 32.98 4.24
174 175 6.128138 ACCCTATTTAGTGAGTTTTCAGCT 57.872 37.500 0.00 0.00 32.98 4.24
175 176 7.104290 ACTACCCTATTTAGTGAGTTTTCAGC 58.896 38.462 0.00 0.00 32.98 4.26
179 180 9.939802 CACTAACTACCCTATTTAGTGAGTTTT 57.060 33.333 13.15 0.00 46.40 2.43
180 181 9.097946 ACACTAACTACCCTATTTAGTGAGTTT 57.902 33.333 21.60 2.88 46.40 2.66
181 182 8.661752 ACACTAACTACCCTATTTAGTGAGTT 57.338 34.615 21.60 3.17 46.40 3.01
182 183 7.892241 TGACACTAACTACCCTATTTAGTGAGT 59.108 37.037 21.60 6.24 46.40 3.41
183 184 8.289939 TGACACTAACTACCCTATTTAGTGAG 57.710 38.462 21.60 5.70 46.40 3.51
184 185 8.654485 TTGACACTAACTACCCTATTTAGTGA 57.346 34.615 21.60 3.74 46.40 3.41
189 190 9.582648 ACATTTTTGACACTAACTACCCTATTT 57.417 29.630 0.00 0.00 0.00 1.40
190 191 9.227777 GACATTTTTGACACTAACTACCCTATT 57.772 33.333 0.00 0.00 0.00 1.73
191 192 8.380099 TGACATTTTTGACACTAACTACCCTAT 58.620 33.333 0.00 0.00 0.00 2.57
192 193 7.737869 TGACATTTTTGACACTAACTACCCTA 58.262 34.615 0.00 0.00 0.00 3.53
193 194 6.597562 TGACATTTTTGACACTAACTACCCT 58.402 36.000 0.00 0.00 0.00 4.34
194 195 6.870971 TGACATTTTTGACACTAACTACCC 57.129 37.500 0.00 0.00 0.00 3.69
195 196 9.016623 GTTTTGACATTTTTGACACTAACTACC 57.983 33.333 0.00 0.00 0.00 3.18
196 197 9.562583 TGTTTTGACATTTTTGACACTAACTAC 57.437 29.630 0.00 0.00 0.00 2.73
197 198 9.781834 CTGTTTTGACATTTTTGACACTAACTA 57.218 29.630 0.00 0.00 0.00 2.24
198 199 7.759433 CCTGTTTTGACATTTTTGACACTAACT 59.241 33.333 0.00 0.00 0.00 2.24
199 200 7.010091 CCCTGTTTTGACATTTTTGACACTAAC 59.990 37.037 0.00 0.00 0.00 2.34
200 201 7.038659 CCCTGTTTTGACATTTTTGACACTAA 58.961 34.615 0.00 0.00 0.00 2.24
201 202 6.406400 CCCCTGTTTTGACATTTTTGACACTA 60.406 38.462 0.00 0.00 0.00 2.74
202 203 5.418676 CCCTGTTTTGACATTTTTGACACT 58.581 37.500 0.00 0.00 0.00 3.55
203 204 4.570369 CCCCTGTTTTGACATTTTTGACAC 59.430 41.667 0.00 0.00 0.00 3.67
204 205 4.467795 TCCCCTGTTTTGACATTTTTGACA 59.532 37.500 0.00 0.00 0.00 3.58
205 206 5.017294 TCCCCTGTTTTGACATTTTTGAC 57.983 39.130 0.00 0.00 0.00 3.18
206 207 5.885449 ATCCCCTGTTTTGACATTTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
207 208 8.341903 GTTTTATCCCCTGTTTTGACATTTTTG 58.658 33.333 0.00 0.00 0.00 2.44
208 209 7.500892 GGTTTTATCCCCTGTTTTGACATTTTT 59.499 33.333 0.00 0.00 0.00 1.94
209 210 6.995686 GGTTTTATCCCCTGTTTTGACATTTT 59.004 34.615 0.00 0.00 0.00 1.82
210 211 6.465178 GGGTTTTATCCCCTGTTTTGACATTT 60.465 38.462 0.00 0.00 41.54 2.32
211 212 5.012664 GGGTTTTATCCCCTGTTTTGACATT 59.987 40.000 0.00 0.00 41.54 2.71
212 213 4.530553 GGGTTTTATCCCCTGTTTTGACAT 59.469 41.667 0.00 0.00 41.54 3.06
213 214 3.898741 GGGTTTTATCCCCTGTTTTGACA 59.101 43.478 0.00 0.00 41.54 3.58
214 215 3.057104 CGGGTTTTATCCCCTGTTTTGAC 60.057 47.826 0.00 0.00 44.32 3.18
215 216 3.158676 CGGGTTTTATCCCCTGTTTTGA 58.841 45.455 0.00 0.00 44.32 2.69
216 217 2.232696 CCGGGTTTTATCCCCTGTTTTG 59.767 50.000 0.00 0.00 44.32 2.44
217 218 2.110365 TCCGGGTTTTATCCCCTGTTTT 59.890 45.455 0.00 0.00 44.32 2.43
218 219 1.711942 TCCGGGTTTTATCCCCTGTTT 59.288 47.619 0.00 0.00 44.32 2.83
219 220 1.374572 TCCGGGTTTTATCCCCTGTT 58.625 50.000 0.00 0.00 44.32 3.16
220 221 1.374572 TTCCGGGTTTTATCCCCTGT 58.625 50.000 0.00 0.00 44.32 4.00
221 222 2.748209 ATTCCGGGTTTTATCCCCTG 57.252 50.000 0.00 0.00 44.32 4.45
222 223 2.583566 TGAATTCCGGGTTTTATCCCCT 59.416 45.455 0.00 0.00 44.32 4.79
223 224 2.691526 GTGAATTCCGGGTTTTATCCCC 59.308 50.000 0.00 0.00 44.32 4.81
224 225 3.628008 AGTGAATTCCGGGTTTTATCCC 58.372 45.455 0.00 0.00 43.78 3.85
225 226 4.524053 AGAGTGAATTCCGGGTTTTATCC 58.476 43.478 0.00 0.00 0.00 2.59
226 227 6.510879 AAAGAGTGAATTCCGGGTTTTATC 57.489 37.500 0.00 0.00 0.00 1.75
227 228 7.173032 ACTAAAGAGTGAATTCCGGGTTTTAT 58.827 34.615 0.00 0.00 33.41 1.40
228 229 6.536447 ACTAAAGAGTGAATTCCGGGTTTTA 58.464 36.000 0.00 1.97 33.41 1.52
229 230 5.382616 ACTAAAGAGTGAATTCCGGGTTTT 58.617 37.500 0.00 0.00 33.41 2.43
230 231 4.981812 ACTAAAGAGTGAATTCCGGGTTT 58.018 39.130 0.00 0.00 33.41 3.27
231 232 4.286291 AGACTAAAGAGTGAATTCCGGGTT 59.714 41.667 0.00 0.00 35.45 4.11
232 233 3.838903 AGACTAAAGAGTGAATTCCGGGT 59.161 43.478 0.00 0.00 35.45 5.28
233 234 4.160626 AGAGACTAAAGAGTGAATTCCGGG 59.839 45.833 0.00 0.00 35.45 5.73
234 235 5.126384 AGAGAGACTAAAGAGTGAATTCCGG 59.874 44.000 2.27 0.00 35.45 5.14
235 236 6.202516 AGAGAGACTAAAGAGTGAATTCCG 57.797 41.667 2.27 0.00 35.45 4.30
236 237 7.382898 ACAAGAGAGACTAAAGAGTGAATTCC 58.617 38.462 2.27 0.00 35.45 3.01
237 238 8.085296 TGACAAGAGAGACTAAAGAGTGAATTC 58.915 37.037 0.00 0.00 35.45 2.17
238 239 7.957002 TGACAAGAGAGACTAAAGAGTGAATT 58.043 34.615 0.00 0.00 35.45 2.17
239 240 7.309744 CCTGACAAGAGAGACTAAAGAGTGAAT 60.310 40.741 0.00 0.00 35.45 2.57
240 241 6.015856 CCTGACAAGAGAGACTAAAGAGTGAA 60.016 42.308 0.00 0.00 35.45 3.18
241 242 5.475220 CCTGACAAGAGAGACTAAAGAGTGA 59.525 44.000 0.00 0.00 35.45 3.41
242 243 5.242838 ACCTGACAAGAGAGACTAAAGAGTG 59.757 44.000 0.00 0.00 35.45 3.51
243 244 5.390387 ACCTGACAAGAGAGACTAAAGAGT 58.610 41.667 0.00 0.00 39.20 3.24
244 245 5.710099 AGACCTGACAAGAGAGACTAAAGAG 59.290 44.000 0.00 0.00 0.00 2.85
245 246 5.475220 CAGACCTGACAAGAGAGACTAAAGA 59.525 44.000 0.00 0.00 0.00 2.52
246 247 5.708948 CAGACCTGACAAGAGAGACTAAAG 58.291 45.833 0.00 0.00 0.00 1.85
266 267 4.069232 CGAGACAAGCGGGGCAGA 62.069 66.667 0.00 0.00 0.00 4.26
267 268 2.890847 CTACGAGACAAGCGGGGCAG 62.891 65.000 0.00 0.00 0.00 4.85
276 277 5.681639 TCATATCTCAGTCCTACGAGACAA 58.318 41.667 0.00 0.00 40.92 3.18
299 362 4.864704 ACACAAAACAAGAACCAACACT 57.135 36.364 0.00 0.00 0.00 3.55
307 370 5.384063 TTCTCTGCAACACAAAACAAGAA 57.616 34.783 0.00 0.00 0.00 2.52
324 387 3.316501 AGCATGGATCCTAGCTTTCTCT 58.683 45.455 21.17 3.71 32.52 3.10
339 408 2.584418 CGACTCCGCAGAGCATGG 60.584 66.667 0.00 0.00 44.65 3.66
378 447 5.928264 AGTTTGGAATAAAGCAATTCAGCAC 59.072 36.000 8.23 2.75 37.56 4.40
422 491 7.041721 TCGACACTAACATTCATAAGCTCAAT 58.958 34.615 0.00 0.00 0.00 2.57
559 628 7.479980 TGCATTCCTTATGAAATTTAGTTCCG 58.520 34.615 0.00 0.00 36.33 4.30
677 748 8.814038 AAAATACTGATTCACTATGCCTCTTT 57.186 30.769 0.00 0.00 0.00 2.52
688 759 7.646130 CGGAGAGAGTAGAAAATACTGATTCAC 59.354 40.741 0.00 0.00 0.00 3.18
789 861 9.941664 CGATATAAGAAGCAAAATGAGTGAATT 57.058 29.630 0.00 0.00 0.00 2.17
812 884 8.424918 ACAGATTCCAATATGAACTACTTCGAT 58.575 33.333 0.97 0.00 32.24 3.59
888 967 5.006844 TGACATCTCGTTTTTACTTTTGCGA 59.993 36.000 0.00 0.00 0.00 5.10
954 1045 3.064900 AGACAATTGGGAGAAGACAGC 57.935 47.619 10.83 0.00 0.00 4.40
963 1074 1.223487 GGCCGCTAGACAATTGGGA 59.777 57.895 10.83 0.00 0.00 4.37
969 1080 1.898154 GGAAGAGGCCGCTAGACAA 59.102 57.895 10.31 0.00 0.00 3.18
989 1100 1.946475 GCGGTGGACTAGTGGGAGAC 61.946 65.000 0.00 0.00 0.00 3.36
990 1101 1.681327 GCGGTGGACTAGTGGGAGA 60.681 63.158 0.00 0.00 0.00 3.71
1098 1250 3.060020 ATCGATTCGGACGGCGTGT 62.060 57.895 21.19 0.00 0.00 4.49
1343 1517 4.360643 GCCATCAATCAGGCCCAA 57.639 55.556 0.00 0.00 45.18 4.12
1492 1672 9.274065 GCTAATTAAATTTAGGCCGAAATATCG 57.726 33.333 22.22 9.65 37.88 2.92
1513 1693 4.513442 TCAACACAAATAGCTCCGCTAAT 58.487 39.130 0.00 0.00 44.62 1.73
1514 1694 3.932822 TCAACACAAATAGCTCCGCTAA 58.067 40.909 0.00 0.00 44.62 3.09
1515 1695 3.603158 TCAACACAAATAGCTCCGCTA 57.397 42.857 0.00 0.00 45.55 4.26
1516 1696 2.472695 TCAACACAAATAGCTCCGCT 57.527 45.000 0.00 0.00 43.41 5.52
1563 2177 7.433719 CGAATGACCAACAAAACTGACATTTAA 59.566 33.333 0.00 0.00 0.00 1.52
1633 2263 4.340950 CACCCCAAAGATATAAAACGGCAT 59.659 41.667 0.00 0.00 0.00 4.40
1668 2361 3.119708 GCAACATTAGGTGCCTTCTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
1725 2421 3.095332 TCACTCTCTAGCAGTTCTGCAT 58.905 45.455 23.69 12.81 37.25 3.96
1868 2565 4.817318 AGAAAAGGCAAGGACACAAAAA 57.183 36.364 0.00 0.00 0.00 1.94
1929 2634 8.292448 CAGTGTTTTCATTAAGCTCTACACAAT 58.708 33.333 0.00 0.00 37.64 2.71
2168 2873 7.618137 TCATCTAGTTTACCCTTTAGAACCAC 58.382 38.462 0.00 0.00 0.00 4.16
2564 3589 6.046593 TGTAAATTAGATAACTCACTGGCCG 58.953 40.000 0.00 0.00 0.00 6.13
2800 6360 5.915758 GCAAGTATATACAAGACACGGAGAG 59.084 44.000 15.18 0.00 0.00 3.20
2801 6361 5.593095 AGCAAGTATATACAAGACACGGAGA 59.407 40.000 15.18 0.00 0.00 3.71
2802 6362 5.687730 CAGCAAGTATATACAAGACACGGAG 59.312 44.000 15.18 0.00 0.00 4.63
2803 6363 5.126545 ACAGCAAGTATATACAAGACACGGA 59.873 40.000 15.18 0.00 0.00 4.69
2804 6364 5.348986 ACAGCAAGTATATACAAGACACGG 58.651 41.667 15.18 2.33 0.00 4.94
2805 6365 6.887376 AACAGCAAGTATATACAAGACACG 57.113 37.500 15.18 0.45 0.00 4.49
2866 6446 6.335777 AGAAAATCAGTGGCATGCTTAAATC 58.664 36.000 18.92 0.00 0.00 2.17
2867 6447 6.290294 AGAAAATCAGTGGCATGCTTAAAT 57.710 33.333 18.92 0.00 0.00 1.40
2871 6451 3.575256 TCAAGAAAATCAGTGGCATGCTT 59.425 39.130 18.92 0.24 0.00 3.91
2872 6452 3.159472 TCAAGAAAATCAGTGGCATGCT 58.841 40.909 18.92 0.00 0.00 3.79
2910 6496 8.622157 TCTAGCAGTATAAAGACACATGAGTAC 58.378 37.037 0.00 0.00 0.00 2.73
2929 6515 4.754114 GCTTCCTTGGATTGTATCTAGCAG 59.246 45.833 0.00 0.00 0.00 4.24
2960 6546 9.221775 CGCATTCTTTTGAATAATACCTACAAC 57.778 33.333 0.00 0.00 46.51 3.32
2967 6553 9.121517 CATGATCCGCATTCTTTTGAATAATAC 57.878 33.333 0.00 0.00 46.51 1.89
2978 6564 0.825010 GCCCCATGATCCGCATTCTT 60.825 55.000 0.00 0.00 34.15 2.52
3227 6823 5.769484 TCCTTATATCGGACTGACACTTC 57.231 43.478 0.00 0.00 0.00 3.01
3366 6962 9.562408 TCTCATCATCCTTATATCGGACTATAC 57.438 37.037 0.00 0.00 32.41 1.47
3368 6964 9.653516 AATCTCATCATCCTTATATCGGACTAT 57.346 33.333 0.00 0.00 32.41 2.12
3369 6965 8.907885 CAATCTCATCATCCTTATATCGGACTA 58.092 37.037 0.00 0.00 32.41 2.59
3420 7016 4.384647 CCTCCACTTCCTTTATCTTCAGGG 60.385 50.000 0.00 0.00 0.00 4.45
3451 7050 1.123655 GCGTTTGCACTGCTTTCTTC 58.876 50.000 1.98 0.00 42.15 2.87
3454 7053 3.256620 AAGCGTTTGCACTGCTTTC 57.743 47.368 12.17 0.00 46.12 2.62
3473 7072 2.823984 CAGCTCCTCTACATTCTGCTG 58.176 52.381 0.00 0.00 39.98 4.41
3531 7130 0.962356 CCCCACTTCTGCTCGCAATT 60.962 55.000 0.00 0.00 0.00 2.32
3880 7747 0.036732 TGGCAAGCCAAGGTCACTAG 59.963 55.000 12.11 0.00 44.12 2.57
3892 7759 0.750850 ATCAAGGATGCATGGCAAGC 59.249 50.000 2.46 7.93 43.62 4.01
4076 8010 5.692115 TCATGGTGCTTATACCTTCTGAA 57.308 39.130 0.00 0.00 41.43 3.02
4093 8027 2.141517 CGAGCCTAGCAAGAATCATGG 58.858 52.381 0.00 0.00 0.00 3.66
4130 8064 4.213482 ACCATTAGTTCGTGCTTTCAGTTC 59.787 41.667 0.00 0.00 0.00 3.01
4131 8065 4.134563 ACCATTAGTTCGTGCTTTCAGTT 58.865 39.130 0.00 0.00 0.00 3.16
4166 8104 4.142315 ACTGCAAAATCGATTAGCAGCAAT 60.142 37.500 38.46 27.48 45.27 3.56
4209 8147 8.492415 AGGAACATGAATACTTATGCCTACTA 57.508 34.615 0.00 0.00 0.00 1.82
4259 8197 4.082026 GGATTCACTTGGATGACAAAAGGG 60.082 45.833 0.00 0.00 38.91 3.95
4328 8297 3.152341 AGCAGGAAGATTTTCAGGTGTG 58.848 45.455 0.00 0.00 34.90 3.82
4375 8346 4.096682 GTGTTACTGGCCACAAACAAGTAA 59.903 41.667 23.31 15.78 31.27 2.24
4512 8483 1.265454 GGAGGGGTCAGGTCGATGTT 61.265 60.000 0.00 0.00 0.00 2.71
4586 8557 3.006728 TCCTTGAATCGGGCCGGT 61.007 61.111 27.98 18.59 0.00 5.28
4587 8558 2.513897 GTCCTTGAATCGGGCCGG 60.514 66.667 27.98 8.51 0.00 6.13
4588 8559 2.106683 GTGTCCTTGAATCGGGCCG 61.107 63.158 22.51 22.51 0.00 6.13
4654 8625 2.350134 GGTCAGGGTTTCCGTCCC 59.650 66.667 0.00 0.00 44.90 4.46
4661 8632 0.036010 CGATGCTCTGGTCAGGGTTT 60.036 55.000 0.00 0.00 0.00 3.27
4739 8710 3.442273 TCTTGGTCTTGGTTGTTGTTGAC 59.558 43.478 0.00 0.00 0.00 3.18
4740 8711 3.691575 TCTTGGTCTTGGTTGTTGTTGA 58.308 40.909 0.00 0.00 0.00 3.18
4805 8776 1.153449 TGCACCTTCCTTATCCGCG 60.153 57.895 0.00 0.00 0.00 6.46
4808 8779 1.488393 AGCTCTGCACCTTCCTTATCC 59.512 52.381 0.00 0.00 0.00 2.59
4977 8948 3.190118 CCTATACCGGTAGCTTCCTTACG 59.810 52.174 20.91 0.00 0.00 3.18
5055 9028 1.745489 CCCGGCAGTTCCAGCTAAC 60.745 63.158 0.00 0.00 34.01 2.34
5084 9057 2.874664 TTCACGAACTGTCCCGGGG 61.875 63.158 23.50 6.77 0.00 5.73
5127 9100 1.000396 GCCATGTTTCAGAGGGGCT 60.000 57.895 0.00 0.00 38.37 5.19
5160 9133 2.256306 TGGGTGATACAGTGCTTGAGA 58.744 47.619 0.00 0.00 0.00 3.27
5169 9142 4.070009 CCACATCATCATGGGTGATACAG 58.930 47.826 12.26 5.65 43.14 2.74
5186 9159 1.077265 CCAGCACCCTTTCCCACAT 59.923 57.895 0.00 0.00 0.00 3.21
5187 9160 2.520458 CCAGCACCCTTTCCCACA 59.480 61.111 0.00 0.00 0.00 4.17
5189 9162 2.786512 GATGCCAGCACCCTTTCCCA 62.787 60.000 0.00 0.00 0.00 4.37
5190 9163 2.037847 ATGCCAGCACCCTTTCCC 59.962 61.111 0.00 0.00 0.00 3.97
5209 9183 3.454375 CGCTATCGTCACAAAATAGGGT 58.546 45.455 0.00 0.00 33.57 4.34
5224 9198 3.871594 AGCAACTTTATGTCCACGCTATC 59.128 43.478 0.00 0.00 0.00 2.08
5230 9204 6.017605 CCATATGAGAGCAACTTTATGTCCAC 60.018 42.308 3.65 0.00 0.00 4.02
5232 9206 6.058183 ACCATATGAGAGCAACTTTATGTCC 58.942 40.000 3.65 0.00 0.00 4.02
5236 9210 6.582636 TCGAACCATATGAGAGCAACTTTAT 58.417 36.000 3.65 0.00 0.00 1.40
5302 9276 5.123936 CAGAATCCACATGTGATGTCATCT 58.876 41.667 27.46 16.49 42.70 2.90
5342 9358 1.134220 TCCACGGTTCAGCAGAGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
5350 9366 1.869767 GATCATCATCCACGGTTCAGC 59.130 52.381 0.00 0.00 0.00 4.26
5357 9373 0.610174 ATCCCCGATCATCATCCACG 59.390 55.000 0.00 0.00 0.00 4.94
5382 9398 1.152030 TCCCCTTGCCACAGTCTCT 60.152 57.895 0.00 0.00 0.00 3.10
5420 9438 4.410883 TCCCCGTTATATGTTTCAGACCAT 59.589 41.667 0.00 0.00 0.00 3.55
5421 9439 3.775866 TCCCCGTTATATGTTTCAGACCA 59.224 43.478 0.00 0.00 0.00 4.02
5439 9457 5.622346 AGATAGACACTCTGAAATTCCCC 57.378 43.478 0.00 0.00 0.00 4.81
5495 9515 3.845259 TCATACGTCCAGCCCGGC 61.845 66.667 0.00 0.00 33.14 6.13
5497 9517 0.179084 ATTGTCATACGTCCAGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
5500 9520 5.539582 TTGTTTATTGTCATACGTCCAGC 57.460 39.130 0.00 0.00 0.00 4.85
5501 9521 5.121611 TGCTTGTTTATTGTCATACGTCCAG 59.878 40.000 0.00 0.00 0.00 3.86
5586 9606 3.693578 TGAACATGAGTGTGCTGAAACAA 59.306 39.130 0.00 0.00 38.92 2.83
5593 9613 2.195741 ATGCTGAACATGAGTGTGCT 57.804 45.000 0.00 0.00 38.92 4.40
5595 9615 5.556355 ACAATATGCTGAACATGAGTGTG 57.444 39.130 0.00 0.00 40.06 3.82
5628 9648 2.037901 TGCTGAACATCCCTGCAAAAA 58.962 42.857 0.00 0.00 35.94 1.94
5629 9649 1.702182 TGCTGAACATCCCTGCAAAA 58.298 45.000 0.00 0.00 35.94 2.44
5630 9650 1.927487 ATGCTGAACATCCCTGCAAA 58.073 45.000 0.00 0.00 40.79 3.68
5631 9651 2.804986 TATGCTGAACATCCCTGCAA 57.195 45.000 0.00 0.00 40.79 4.08
5632 9652 2.953648 CAATATGCTGAACATCCCTGCA 59.046 45.455 0.00 0.00 40.38 4.41
5633 9653 2.954318 ACAATATGCTGAACATCCCTGC 59.046 45.455 0.00 0.00 40.38 4.85
5634 9654 5.009010 GGTAACAATATGCTGAACATCCCTG 59.991 44.000 0.00 0.00 40.38 4.45
5635 9655 5.103940 AGGTAACAATATGCTGAACATCCCT 60.104 40.000 0.00 0.00 38.79 4.20
5636 9656 5.133221 AGGTAACAATATGCTGAACATCCC 58.867 41.667 0.00 0.00 38.79 3.85
5637 9657 5.822519 TGAGGTAACAATATGCTGAACATCC 59.177 40.000 0.00 0.00 38.79 3.51
5638 9658 6.925610 TGAGGTAACAATATGCTGAACATC 57.074 37.500 0.00 0.00 38.79 3.06
5639 9659 7.112122 TCTTGAGGTAACAATATGCTGAACAT 58.888 34.615 0.00 0.00 40.70 2.71
5640 9660 6.472016 TCTTGAGGTAACAATATGCTGAACA 58.528 36.000 0.00 0.00 41.41 3.18
5641 9661 6.985188 TCTTGAGGTAACAATATGCTGAAC 57.015 37.500 0.00 0.00 41.41 3.18
5642 9662 7.337938 TGATCTTGAGGTAACAATATGCTGAA 58.662 34.615 0.00 0.00 41.41 3.02
5643 9663 6.888105 TGATCTTGAGGTAACAATATGCTGA 58.112 36.000 0.00 0.00 41.41 4.26
5644 9664 6.988580 TCTGATCTTGAGGTAACAATATGCTG 59.011 38.462 0.00 0.00 41.41 4.41
5645 9665 6.989169 GTCTGATCTTGAGGTAACAATATGCT 59.011 38.462 0.00 0.00 41.41 3.79
5646 9666 6.074088 CGTCTGATCTTGAGGTAACAATATGC 60.074 42.308 0.00 0.00 41.41 3.14
5647 9667 6.422100 CCGTCTGATCTTGAGGTAACAATATG 59.578 42.308 0.00 0.00 41.41 1.78
5648 9668 6.098409 ACCGTCTGATCTTGAGGTAACAATAT 59.902 38.462 0.00 0.00 41.41 1.28
5653 9673 3.870633 ACCGTCTGATCTTGAGGTAAC 57.129 47.619 0.00 0.00 0.00 2.50
5657 9677 3.003480 GGAAAACCGTCTGATCTTGAGG 58.997 50.000 0.00 0.00 0.00 3.86
5671 9691 3.367743 GAACCGGGCGGGAAAACC 61.368 66.667 18.95 0.00 39.97 3.27
5717 10444 3.334583 ACACTGCGTTGATAACATCCT 57.665 42.857 0.00 0.00 0.00 3.24
5732 10459 4.572985 TCCTCAAAGAAATGCAACACTG 57.427 40.909 0.00 0.00 0.00 3.66
5765 10492 3.871594 GACTGTGTCATTAATCCCTTCCG 59.128 47.826 0.00 0.00 32.09 4.30
5780 10507 2.236395 GGGGTTAGCACTATGACTGTGT 59.764 50.000 0.00 0.00 37.70 3.72
5784 10511 2.154567 TCGGGGTTAGCACTATGACT 57.845 50.000 0.00 0.00 0.00 3.41
5785 10512 2.973694 TTCGGGGTTAGCACTATGAC 57.026 50.000 0.00 0.00 0.00 3.06
5822 10549 4.894784 TCGGTCTAAAGTCTTTCAAGCAT 58.105 39.130 0.00 0.00 0.00 3.79
5823 10550 4.330944 TCGGTCTAAAGTCTTTCAAGCA 57.669 40.909 0.00 0.00 0.00 3.91
5824 10551 4.929808 TGATCGGTCTAAAGTCTTTCAAGC 59.070 41.667 0.00 0.55 0.00 4.01
5825 10552 5.062809 GCTGATCGGTCTAAAGTCTTTCAAG 59.937 44.000 0.00 0.00 0.00 3.02
5826 10553 4.929808 GCTGATCGGTCTAAAGTCTTTCAA 59.070 41.667 0.00 0.00 0.00 2.69
5827 10554 4.495422 GCTGATCGGTCTAAAGTCTTTCA 58.505 43.478 0.00 0.00 0.00 2.69
5828 10555 3.866327 GGCTGATCGGTCTAAAGTCTTTC 59.134 47.826 0.00 0.00 0.00 2.62
5829 10556 3.515901 AGGCTGATCGGTCTAAAGTCTTT 59.484 43.478 6.94 2.81 0.00 2.52
5830 10557 3.100671 AGGCTGATCGGTCTAAAGTCTT 58.899 45.455 6.94 0.00 0.00 3.01
5832 10559 2.166664 ACAGGCTGATCGGTCTAAAGTC 59.833 50.000 23.66 0.00 0.00 3.01
5926 10663 3.765381 TCATCCTTGGAATGAAAGCACA 58.235 40.909 0.00 0.00 30.37 4.57
5929 10666 5.786264 ATCATCATCCTTGGAATGAAAGC 57.214 39.130 7.78 0.00 36.75 3.51
5930 10667 7.358066 CGTAATCATCATCCTTGGAATGAAAG 58.642 38.462 7.78 4.48 36.75 2.62
5940 10677 5.684704 ACATTGTCCGTAATCATCATCCTT 58.315 37.500 0.00 0.00 0.00 3.36
5941 10678 5.163311 TGACATTGTCCGTAATCATCATCCT 60.163 40.000 14.05 0.00 0.00 3.24
5943 10680 6.424812 TGATGACATTGTCCGTAATCATCATC 59.575 38.462 14.05 7.41 38.11 2.92
5945 10682 5.669477 TGATGACATTGTCCGTAATCATCA 58.331 37.500 14.05 11.53 39.90 3.07
5955 10692 4.883585 TCAAAGGCTATGATGACATTGTCC 59.116 41.667 14.05 0.53 35.22 4.02
5958 10695 5.732528 GCACTCAAAGGCTATGATGACATTG 60.733 44.000 0.00 0.00 37.87 2.82
5971 10708 6.540189 TGAATTCTATAGAAGCACTCAAAGGC 59.460 38.462 19.51 0.00 37.48 4.35
5976 10713 6.045318 GTGCTGAATTCTATAGAAGCACTCA 58.955 40.000 31.82 23.02 43.31 3.41
6004 10741 0.553333 TGGGTGTCATGTGGGTTTCA 59.447 50.000 0.00 0.00 0.00 2.69
6027 10764 1.148273 AAGGTCCAGCTTGAACGCA 59.852 52.632 0.00 0.00 0.00 5.24
6032 10769 0.106268 TTTGGCAAGGTCCAGCTTGA 60.106 50.000 20.16 0.00 37.44 3.02
6076 11402 0.984961 CAAGGCTCCCTCCAGGATCA 60.985 60.000 0.00 0.00 46.33 2.92
6103 11429 5.885465 AGATCCAAAGAGAGTTGAAACCAT 58.115 37.500 0.00 0.00 0.00 3.55
6105 11431 7.148171 CCAATAGATCCAAAGAGAGTTGAAACC 60.148 40.741 0.00 0.00 0.00 3.27
6126 11452 8.902806 GGACTTCACACATTTCATTATCCAATA 58.097 33.333 0.00 0.00 0.00 1.90
6127 11453 7.415541 CGGACTTCACACATTTCATTATCCAAT 60.416 37.037 0.00 0.00 0.00 3.16
6164 11490 2.229792 ACACATCGCCACATTTTGACT 58.770 42.857 0.00 0.00 0.00 3.41
6177 11505 1.990799 TGAACGGCTCTAACACATCG 58.009 50.000 0.00 0.00 0.00 3.84
6180 11508 2.869801 CAGTTTGAACGGCTCTAACACA 59.130 45.455 13.51 0.00 40.85 3.72
6186 11514 2.158957 TCTTGACAGTTTGAACGGCTCT 60.159 45.455 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.