Multiple sequence alignment - TraesCS1D01G379900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G379900 chr1D 100.000 4740 0 0 1 4740 455776642 455771903 0.000000e+00 8754.0
1 TraesCS1D01G379900 chr1D 76.190 2184 402 91 1357 3479 112470646 112468520 0.000000e+00 1044.0
2 TraesCS1D01G379900 chr1D 96.429 196 7 0 1718 1913 394263956 394263761 1.650000e-84 324.0
3 TraesCS1D01G379900 chr1D 74.618 524 115 14 2703 3214 16612158 16612675 1.030000e-51 215.0
4 TraesCS1D01G379900 chr1D 77.953 127 13 10 362 487 454768775 454768663 1.100000e-06 65.8
5 TraesCS1D01G379900 chr1D 100.000 28 0 0 371 398 401659627 401659600 9.000000e-03 52.8
6 TraesCS1D01G379900 chr1B 94.124 3438 156 31 551 3965 626152283 626155697 0.000000e+00 5188.0
7 TraesCS1D01G379900 chr1B 75.755 2186 406 93 1357 3479 172009326 172007202 0.000000e+00 987.0
8 TraesCS1D01G379900 chr1B 81.655 556 80 18 4189 4735 37592286 37592828 4.350000e-120 442.0
9 TraesCS1D01G379900 chr1B 75.095 526 109 19 2703 3214 30545841 30546358 4.770000e-55 226.0
10 TraesCS1D01G379900 chr1B 100.000 28 0 0 375 402 569514569 569514596 9.000000e-03 52.8
11 TraesCS1D01G379900 chr1A 93.696 3474 161 35 528 3966 549361251 549357801 0.000000e+00 5149.0
12 TraesCS1D01G379900 chr1A 75.940 2182 413 86 1357 3479 119711804 119709676 0.000000e+00 1018.0
13 TraesCS1D01G379900 chr1A 91.544 544 43 3 4198 4740 490112855 490113396 0.000000e+00 747.0
14 TraesCS1D01G379900 chr1A 90.852 317 21 4 120 431 549361564 549361251 7.340000e-113 418.0
15 TraesCS1D01G379900 chr1A 97.297 111 2 1 7 116 549410048 549409938 2.250000e-43 187.0
16 TraesCS1D01G379900 chr3D 92.279 544 39 3 4198 4740 571357058 571356517 0.000000e+00 769.0
17 TraesCS1D01G379900 chr3D 89.655 116 11 1 4069 4184 4575460 4575346 3.820000e-31 147.0
18 TraesCS1D01G379900 chr3D 86.066 122 15 2 360 481 573906836 573906717 3.850000e-26 130.0
19 TraesCS1D01G379900 chrUn 91.328 542 44 3 4199 4740 264009175 264008637 0.000000e+00 737.0
20 TraesCS1D01G379900 chrUn 91.328 542 44 3 4199 4740 294195649 294195111 0.000000e+00 737.0
21 TraesCS1D01G379900 chrUn 81.867 557 78 18 4189 4735 73936665 73937208 9.360000e-122 448.0
22 TraesCS1D01G379900 chrUn 100.000 31 0 0 973 1003 379213554 379213524 1.840000e-04 58.4
23 TraesCS1D01G379900 chr5A 90.809 544 41 4 4198 4740 560991739 560992274 0.000000e+00 719.0
24 TraesCS1D01G379900 chr6B 89.890 544 52 3 4198 4740 113371877 113371336 0.000000e+00 697.0
25 TraesCS1D01G379900 chr7B 88.342 549 56 5 4198 4740 617500912 617500366 0.000000e+00 652.0
26 TraesCS1D01G379900 chr7B 72.525 1798 387 86 1364 3097 508657575 508659329 7.130000e-133 484.0
27 TraesCS1D01G379900 chr7B 71.706 979 218 43 2282 3214 725518962 725517997 7.990000e-53 219.0
28 TraesCS1D01G379900 chr7B 100.000 28 0 0 375 402 656285539 656285512 9.000000e-03 52.8
29 TraesCS1D01G379900 chr7A 72.556 1800 387 84 1364 3099 549528538 549530294 5.510000e-134 488.0
30 TraesCS1D01G379900 chr7A 100.000 28 0 0 375 402 682176834 682176861 9.000000e-03 52.8
31 TraesCS1D01G379900 chr7D 72.404 1801 388 84 1364 3099 483140473 483142229 5.550000e-129 472.0
32 TraesCS1D01G379900 chr7D 93.162 117 8 0 4071 4187 405106397 405106281 6.310000e-39 172.0
33 TraesCS1D01G379900 chr7D 72.361 521 128 15 2702 3214 625597869 625597357 2.950000e-32 150.0
34 TraesCS1D01G379900 chr7D 90.351 114 6 2 4069 4182 36467254 36467362 1.370000e-30 145.0
35 TraesCS1D01G379900 chr3A 75.514 486 84 26 2997 3479 722437357 722437810 6.220000e-49 206.0
36 TraesCS1D01G379900 chr5B 84.466 103 8 6 3300 3398 685436278 685436376 1.400000e-15 95.3
37 TraesCS1D01G379900 chr4A 84.466 103 8 6 3300 3398 625534089 625534187 1.400000e-15 95.3
38 TraesCS1D01G379900 chr5D 83.495 103 9 6 3300 3398 543597143 543597045 6.530000e-14 89.8
39 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 69769834 69769804 1.840000e-04 58.4
40 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 71066136 71066166 1.840000e-04 58.4
41 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 142026682 142026712 1.840000e-04 58.4
42 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 377878700 377878670 1.840000e-04 58.4
43 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 391744858 391744828 1.840000e-04 58.4
44 TraesCS1D01G379900 chr4B 100.000 31 0 0 973 1003 492312296 492312266 1.840000e-04 58.4
45 TraesCS1D01G379900 chr4B 100.000 28 0 0 375 402 147699422 147699449 9.000000e-03 52.8
46 TraesCS1D01G379900 chr2D 100.000 28 0 0 375 402 590937953 590937980 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G379900 chr1D 455771903 455776642 4739 True 8754.0 8754 100.000 1 4740 1 chr1D.!!$R5 4739
1 TraesCS1D01G379900 chr1D 112468520 112470646 2126 True 1044.0 1044 76.190 1357 3479 1 chr1D.!!$R1 2122
2 TraesCS1D01G379900 chr1D 16612158 16612675 517 False 215.0 215 74.618 2703 3214 1 chr1D.!!$F1 511
3 TraesCS1D01G379900 chr1B 626152283 626155697 3414 False 5188.0 5188 94.124 551 3965 1 chr1B.!!$F4 3414
4 TraesCS1D01G379900 chr1B 172007202 172009326 2124 True 987.0 987 75.755 1357 3479 1 chr1B.!!$R1 2122
5 TraesCS1D01G379900 chr1B 37592286 37592828 542 False 442.0 442 81.655 4189 4735 1 chr1B.!!$F2 546
6 TraesCS1D01G379900 chr1B 30545841 30546358 517 False 226.0 226 75.095 2703 3214 1 chr1B.!!$F1 511
7 TraesCS1D01G379900 chr1A 549357801 549361564 3763 True 2783.5 5149 92.274 120 3966 2 chr1A.!!$R3 3846
8 TraesCS1D01G379900 chr1A 119709676 119711804 2128 True 1018.0 1018 75.940 1357 3479 1 chr1A.!!$R1 2122
9 TraesCS1D01G379900 chr1A 490112855 490113396 541 False 747.0 747 91.544 4198 4740 1 chr1A.!!$F1 542
10 TraesCS1D01G379900 chr3D 571356517 571357058 541 True 769.0 769 92.279 4198 4740 1 chr3D.!!$R2 542
11 TraesCS1D01G379900 chrUn 264008637 264009175 538 True 737.0 737 91.328 4199 4740 1 chrUn.!!$R1 541
12 TraesCS1D01G379900 chrUn 294195111 294195649 538 True 737.0 737 91.328 4199 4740 1 chrUn.!!$R2 541
13 TraesCS1D01G379900 chrUn 73936665 73937208 543 False 448.0 448 81.867 4189 4735 1 chrUn.!!$F1 546
14 TraesCS1D01G379900 chr5A 560991739 560992274 535 False 719.0 719 90.809 4198 4740 1 chr5A.!!$F1 542
15 TraesCS1D01G379900 chr6B 113371336 113371877 541 True 697.0 697 89.890 4198 4740 1 chr6B.!!$R1 542
16 TraesCS1D01G379900 chr7B 617500366 617500912 546 True 652.0 652 88.342 4198 4740 1 chr7B.!!$R1 542
17 TraesCS1D01G379900 chr7B 508657575 508659329 1754 False 484.0 484 72.525 1364 3097 1 chr7B.!!$F1 1733
18 TraesCS1D01G379900 chr7B 725517997 725518962 965 True 219.0 219 71.706 2282 3214 1 chr7B.!!$R3 932
19 TraesCS1D01G379900 chr7A 549528538 549530294 1756 False 488.0 488 72.556 1364 3099 1 chr7A.!!$F1 1735
20 TraesCS1D01G379900 chr7D 483140473 483142229 1756 False 472.0 472 72.404 1364 3099 1 chr7D.!!$F2 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 537 0.033366 GCCGCAACTTTCCCAACAAT 59.967 50.000 0.0 0.00 0.00 2.71 F
859 867 0.249398 AGTTACGCTGACCCACATCC 59.751 55.000 0.0 0.00 0.00 3.51 F
1190 1207 2.042686 TGCATGGATGTTAGCAGACC 57.957 50.000 0.0 0.00 32.48 3.85 F
1883 1908 2.504244 GAGGACGTGTTCGAGGCG 60.504 66.667 0.0 4.28 40.62 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 1908 2.511600 CTCCGGGCGTTGGTGATC 60.512 66.667 0.00 0.0 0.00 2.92 R
2600 2689 1.078426 GATGGACCGGAACACCTGG 60.078 63.158 9.46 0.0 0.00 4.45 R
3033 3122 3.743017 GGCCTGGATGCCCTTGGA 61.743 66.667 0.00 0.0 46.11 3.53 R
3857 3973 0.107703 TCAGCCACGTTCATCCATCC 60.108 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.787473 AAAATGATCACCCTCAGCGA 57.213 45.000 0.00 0.00 0.00 4.93
28 29 3.287867 AAAATGATCACCCTCAGCGAT 57.712 42.857 0.00 0.00 0.00 4.58
29 30 3.287867 AAATGATCACCCTCAGCGATT 57.712 42.857 0.00 0.00 0.00 3.34
30 31 3.287867 AATGATCACCCTCAGCGATTT 57.712 42.857 0.00 0.00 0.00 2.17
31 32 2.028420 TGATCACCCTCAGCGATTTG 57.972 50.000 0.00 0.00 0.00 2.32
32 33 1.303309 GATCACCCTCAGCGATTTGG 58.697 55.000 0.00 0.00 0.00 3.28
33 34 0.749454 ATCACCCTCAGCGATTTGGC 60.749 55.000 0.00 0.00 0.00 4.52
34 35 2.044946 ACCCTCAGCGATTTGGCC 60.045 61.111 0.00 0.00 0.00 5.36
35 36 2.273449 CCCTCAGCGATTTGGCCT 59.727 61.111 3.32 0.00 0.00 5.19
36 37 1.379044 CCCTCAGCGATTTGGCCTT 60.379 57.895 3.32 0.00 0.00 4.35
37 38 1.660560 CCCTCAGCGATTTGGCCTTG 61.661 60.000 3.32 0.00 0.00 3.61
38 39 1.660560 CCTCAGCGATTTGGCCTTGG 61.661 60.000 3.32 0.00 0.00 3.61
39 40 0.962356 CTCAGCGATTTGGCCTTGGT 60.962 55.000 3.32 0.00 0.00 3.67
40 41 0.539438 TCAGCGATTTGGCCTTGGTT 60.539 50.000 3.32 0.00 0.00 3.67
41 42 0.318120 CAGCGATTTGGCCTTGGTTT 59.682 50.000 3.32 0.00 0.00 3.27
42 43 0.603065 AGCGATTTGGCCTTGGTTTC 59.397 50.000 3.32 0.00 0.00 2.78
43 44 0.316841 GCGATTTGGCCTTGGTTTCA 59.683 50.000 3.32 0.00 0.00 2.69
44 45 1.066929 GCGATTTGGCCTTGGTTTCAT 60.067 47.619 3.32 0.00 0.00 2.57
45 46 2.165437 GCGATTTGGCCTTGGTTTCATA 59.835 45.455 3.32 0.00 0.00 2.15
46 47 3.181476 GCGATTTGGCCTTGGTTTCATAT 60.181 43.478 3.32 0.00 0.00 1.78
47 48 4.610945 CGATTTGGCCTTGGTTTCATATC 58.389 43.478 3.32 0.00 0.00 1.63
48 49 4.339247 CGATTTGGCCTTGGTTTCATATCT 59.661 41.667 3.32 0.00 0.00 1.98
49 50 5.530915 CGATTTGGCCTTGGTTTCATATCTA 59.469 40.000 3.32 0.00 0.00 1.98
50 51 6.207417 CGATTTGGCCTTGGTTTCATATCTAT 59.793 38.462 3.32 0.00 0.00 1.98
51 52 6.959639 TTTGGCCTTGGTTTCATATCTATC 57.040 37.500 3.32 0.00 0.00 2.08
52 53 4.985538 TGGCCTTGGTTTCATATCTATCC 58.014 43.478 3.32 0.00 0.00 2.59
53 54 4.415179 TGGCCTTGGTTTCATATCTATCCA 59.585 41.667 3.32 0.00 0.00 3.41
54 55 4.762251 GGCCTTGGTTTCATATCTATCCAC 59.238 45.833 0.00 0.00 0.00 4.02
55 56 5.376625 GCCTTGGTTTCATATCTATCCACA 58.623 41.667 0.00 0.00 0.00 4.17
56 57 5.239525 GCCTTGGTTTCATATCTATCCACAC 59.760 44.000 0.00 0.00 0.00 3.82
57 58 6.595682 CCTTGGTTTCATATCTATCCACACT 58.404 40.000 0.00 0.00 0.00 3.55
58 59 6.484643 CCTTGGTTTCATATCTATCCACACTG 59.515 42.308 0.00 0.00 0.00 3.66
59 60 5.928976 TGGTTTCATATCTATCCACACTGG 58.071 41.667 0.00 0.00 39.43 4.00
60 61 5.163205 TGGTTTCATATCTATCCACACTGGG 60.163 44.000 0.00 0.00 38.32 4.45
61 62 4.623932 TTCATATCTATCCACACTGGGC 57.376 45.455 0.00 0.00 38.32 5.36
62 63 3.586429 TCATATCTATCCACACTGGGCA 58.414 45.455 0.00 0.00 38.32 5.36
63 64 3.580022 TCATATCTATCCACACTGGGCAG 59.420 47.826 0.00 0.00 38.32 4.85
64 65 1.885049 ATCTATCCACACTGGGCAGT 58.115 50.000 0.00 0.00 43.61 4.40
65 66 1.195115 TCTATCCACACTGGGCAGTC 58.805 55.000 0.00 0.00 40.20 3.51
66 67 0.179100 CTATCCACACTGGGCAGTCG 60.179 60.000 0.00 0.00 40.20 4.18
67 68 0.613572 TATCCACACTGGGCAGTCGA 60.614 55.000 0.00 0.00 40.20 4.20
68 69 1.267574 ATCCACACTGGGCAGTCGAT 61.268 55.000 0.00 0.00 40.20 3.59
69 70 1.742880 CCACACTGGGCAGTCGATG 60.743 63.158 0.00 0.00 40.20 3.84
70 71 1.004560 CACACTGGGCAGTCGATGT 60.005 57.895 0.00 0.00 40.20 3.06
71 72 0.603707 CACACTGGGCAGTCGATGTT 60.604 55.000 0.00 0.00 40.20 2.71
72 73 0.108585 ACACTGGGCAGTCGATGTTT 59.891 50.000 0.00 0.00 40.20 2.83
73 74 1.346395 ACACTGGGCAGTCGATGTTTA 59.654 47.619 0.00 0.00 40.20 2.01
74 75 1.732259 CACTGGGCAGTCGATGTTTAC 59.268 52.381 0.00 0.00 40.20 2.01
75 76 1.338769 ACTGGGCAGTCGATGTTTACC 60.339 52.381 0.00 0.00 36.92 2.85
76 77 0.981183 TGGGCAGTCGATGTTTACCT 59.019 50.000 0.00 0.00 0.00 3.08
77 78 2.167693 CTGGGCAGTCGATGTTTACCTA 59.832 50.000 0.00 0.00 0.00 3.08
78 79 2.167693 TGGGCAGTCGATGTTTACCTAG 59.832 50.000 0.00 0.00 0.00 3.02
79 80 2.483188 GGGCAGTCGATGTTTACCTAGG 60.483 54.545 7.41 7.41 0.00 3.02
80 81 2.483188 GGCAGTCGATGTTTACCTAGGG 60.483 54.545 14.81 0.00 0.00 3.53
81 82 2.167900 GCAGTCGATGTTTACCTAGGGT 59.832 50.000 14.81 1.17 40.16 4.34
82 83 3.382546 GCAGTCGATGTTTACCTAGGGTA 59.617 47.826 14.81 0.12 37.09 3.69
83 84 4.038883 GCAGTCGATGTTTACCTAGGGTAT 59.961 45.833 14.81 0.00 38.05 2.73
84 85 5.529791 CAGTCGATGTTTACCTAGGGTATG 58.470 45.833 14.81 0.00 38.05 2.39
85 86 5.301045 CAGTCGATGTTTACCTAGGGTATGA 59.699 44.000 14.81 0.00 38.05 2.15
86 87 5.895534 AGTCGATGTTTACCTAGGGTATGAA 59.104 40.000 14.81 0.00 38.05 2.57
87 88 6.040616 AGTCGATGTTTACCTAGGGTATGAAG 59.959 42.308 14.81 0.00 38.05 3.02
88 89 5.303589 TCGATGTTTACCTAGGGTATGAAGG 59.696 44.000 14.81 0.00 38.05 3.46
89 90 5.510861 CGATGTTTACCTAGGGTATGAAGGG 60.511 48.000 14.81 0.00 38.05 3.95
90 91 3.457012 TGTTTACCTAGGGTATGAAGGGC 59.543 47.826 14.81 0.00 38.05 5.19
91 92 2.410790 TACCTAGGGTATGAAGGGCC 57.589 55.000 14.81 0.00 37.09 5.80
92 93 0.648301 ACCTAGGGTATGAAGGGCCT 59.352 55.000 14.81 0.00 32.11 5.19
93 94 1.353091 CCTAGGGTATGAAGGGCCTC 58.647 60.000 6.46 0.56 0.00 4.70
94 95 0.969894 CTAGGGTATGAAGGGCCTCG 59.030 60.000 6.46 0.00 0.00 4.63
95 96 0.471211 TAGGGTATGAAGGGCCTCGG 60.471 60.000 6.46 0.00 0.00 4.63
96 97 2.070650 GGGTATGAAGGGCCTCGGT 61.071 63.158 6.46 0.00 0.00 4.69
97 98 1.446366 GGTATGAAGGGCCTCGGTC 59.554 63.158 6.46 0.51 0.00 4.79
98 99 1.446366 GTATGAAGGGCCTCGGTCC 59.554 63.158 6.46 0.00 40.91 4.46
99 100 1.002403 TATGAAGGGCCTCGGTCCA 59.998 57.895 6.46 0.39 43.56 4.02
100 101 0.399949 TATGAAGGGCCTCGGTCCAT 60.400 55.000 6.46 8.39 43.56 3.41
101 102 1.700042 ATGAAGGGCCTCGGTCCATC 61.700 60.000 6.46 7.13 43.56 3.51
102 103 2.041265 AAGGGCCTCGGTCCATCT 59.959 61.111 6.46 0.00 43.56 2.90
103 104 0.759436 GAAGGGCCTCGGTCCATCTA 60.759 60.000 6.46 0.00 43.56 1.98
104 105 0.104934 AAGGGCCTCGGTCCATCTAT 60.105 55.000 6.46 0.00 43.56 1.98
105 106 0.543174 AGGGCCTCGGTCCATCTATC 60.543 60.000 9.62 0.00 43.56 2.08
106 107 1.545706 GGGCCTCGGTCCATCTATCC 61.546 65.000 0.84 0.00 40.19 2.59
107 108 0.543174 GGCCTCGGTCCATCTATCCT 60.543 60.000 0.00 0.00 0.00 3.24
108 109 0.605589 GCCTCGGTCCATCTATCCTG 59.394 60.000 0.00 0.00 0.00 3.86
109 110 1.823648 GCCTCGGTCCATCTATCCTGA 60.824 57.143 0.00 0.00 0.00 3.86
110 111 2.598565 CCTCGGTCCATCTATCCTGAA 58.401 52.381 0.00 0.00 0.00 3.02
111 112 3.169099 CCTCGGTCCATCTATCCTGAAT 58.831 50.000 0.00 0.00 0.00 2.57
112 113 3.194542 CCTCGGTCCATCTATCCTGAATC 59.805 52.174 0.00 0.00 0.00 2.52
113 114 2.820197 TCGGTCCATCTATCCTGAATCG 59.180 50.000 0.00 0.00 0.00 3.34
114 115 2.672478 CGGTCCATCTATCCTGAATCGC 60.672 54.545 0.00 0.00 0.00 4.58
115 116 2.564947 GGTCCATCTATCCTGAATCGCT 59.435 50.000 0.00 0.00 0.00 4.93
116 117 3.367910 GGTCCATCTATCCTGAATCGCTC 60.368 52.174 0.00 0.00 0.00 5.03
117 118 3.256879 GTCCATCTATCCTGAATCGCTCA 59.743 47.826 0.00 0.00 0.00 4.26
118 119 3.256879 TCCATCTATCCTGAATCGCTCAC 59.743 47.826 0.00 0.00 0.00 3.51
221 223 1.135139 CTCGACACTCGACATTGGGAT 59.865 52.381 0.00 0.00 44.82 3.85
226 228 2.093973 ACACTCGACATTGGGATCAGTC 60.094 50.000 0.00 0.00 0.00 3.51
241 243 0.518636 CAGTCGGTTTGTGGCTCATG 59.481 55.000 0.00 0.00 0.00 3.07
245 247 1.202758 TCGGTTTGTGGCTCATGAACT 60.203 47.619 0.00 0.00 0.00 3.01
250 252 5.596845 GGTTTGTGGCTCATGAACTTTTTA 58.403 37.500 0.00 0.00 0.00 1.52
255 257 7.945033 TGTGGCTCATGAACTTTTTAATTTC 57.055 32.000 0.00 0.00 0.00 2.17
263 265 4.735822 TGAACTTTTTAATTTCGCACCACG 59.264 37.500 0.00 0.00 45.62 4.94
269 271 0.736053 AATTTCGCACCACGTGTTGT 59.264 45.000 14.91 3.15 44.19 3.32
282 284 3.984633 CACGTGTTGTGGTTGAACTTTTT 59.015 39.130 7.58 0.00 45.21 1.94
310 316 6.723298 TTCTATTTTTCCCTTGCAGTTGAA 57.277 33.333 0.00 0.00 0.00 2.69
318 324 3.118811 TCCCTTGCAGTTGAAAAAGTTGG 60.119 43.478 0.00 0.00 0.00 3.77
394 400 5.391449 TCAATCGACTGAGACTTAACGAAG 58.609 41.667 0.00 0.00 38.76 3.79
415 421 9.234384 ACGAAGTCTTAGTTGATACAATATTCG 57.766 33.333 0.00 0.00 29.74 3.34
432 438 9.254133 ACAATATTCGTGAGATCTTACATGAAG 57.746 33.333 16.95 9.16 42.54 3.02
498 504 9.988815 TTTTGTATATTGTGTTTAAATGCCAGT 57.011 25.926 0.00 0.00 0.00 4.00
501 507 9.674068 TGTATATTGTGTTTAAATGCCAGTAGA 57.326 29.630 0.00 0.00 0.00 2.59
502 508 9.931210 GTATATTGTGTTTAAATGCCAGTAGAC 57.069 33.333 0.00 0.00 0.00 2.59
503 509 8.807948 ATATTGTGTTTAAATGCCAGTAGACT 57.192 30.769 0.00 0.00 0.00 3.24
504 510 5.940192 TGTGTTTAAATGCCAGTAGACTG 57.060 39.130 2.50 2.50 43.40 3.51
505 511 5.616270 TGTGTTTAAATGCCAGTAGACTGA 58.384 37.500 11.31 0.00 46.59 3.41
506 512 5.700832 TGTGTTTAAATGCCAGTAGACTGAG 59.299 40.000 11.31 2.94 46.59 3.35
507 513 5.932303 GTGTTTAAATGCCAGTAGACTGAGA 59.068 40.000 11.31 0.00 46.59 3.27
508 514 6.595716 GTGTTTAAATGCCAGTAGACTGAGAT 59.404 38.462 11.31 0.05 46.59 2.75
509 515 6.818644 TGTTTAAATGCCAGTAGACTGAGATC 59.181 38.462 11.31 0.00 46.59 2.75
510 516 6.798427 TTAAATGCCAGTAGACTGAGATCT 57.202 37.500 11.31 0.00 46.59 2.75
511 517 7.898014 TTAAATGCCAGTAGACTGAGATCTA 57.102 36.000 11.31 0.00 46.59 1.98
512 518 6.403866 AAATGCCAGTAGACTGAGATCTAG 57.596 41.667 11.31 0.00 46.59 2.43
513 519 3.218453 TGCCAGTAGACTGAGATCTAGC 58.782 50.000 11.31 4.80 46.59 3.42
514 520 2.556622 GCCAGTAGACTGAGATCTAGCC 59.443 54.545 11.31 0.00 46.59 3.93
515 521 2.811431 CCAGTAGACTGAGATCTAGCCG 59.189 54.545 11.31 0.00 46.59 5.52
516 522 2.225491 CAGTAGACTGAGATCTAGCCGC 59.775 54.545 3.45 0.00 46.59 6.53
517 523 2.158740 AGTAGACTGAGATCTAGCCGCA 60.159 50.000 0.00 0.00 31.75 5.69
518 524 1.769026 AGACTGAGATCTAGCCGCAA 58.231 50.000 0.00 0.00 0.00 4.85
519 525 1.407258 AGACTGAGATCTAGCCGCAAC 59.593 52.381 0.00 0.00 0.00 4.17
520 526 1.407258 GACTGAGATCTAGCCGCAACT 59.593 52.381 0.00 0.00 0.00 3.16
521 527 1.827969 ACTGAGATCTAGCCGCAACTT 59.172 47.619 0.00 0.00 0.00 2.66
522 528 2.234908 ACTGAGATCTAGCCGCAACTTT 59.765 45.455 0.00 0.00 0.00 2.66
523 529 2.863137 CTGAGATCTAGCCGCAACTTTC 59.137 50.000 0.00 0.00 0.00 2.62
524 530 2.205911 GAGATCTAGCCGCAACTTTCC 58.794 52.381 0.00 0.00 0.00 3.13
525 531 1.134371 AGATCTAGCCGCAACTTTCCC 60.134 52.381 0.00 0.00 0.00 3.97
526 532 0.618458 ATCTAGCCGCAACTTTCCCA 59.382 50.000 0.00 0.00 0.00 4.37
527 533 0.398696 TCTAGCCGCAACTTTCCCAA 59.601 50.000 0.00 0.00 0.00 4.12
528 534 0.521735 CTAGCCGCAACTTTCCCAAC 59.478 55.000 0.00 0.00 0.00 3.77
529 535 0.179015 TAGCCGCAACTTTCCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
530 536 1.040339 AGCCGCAACTTTCCCAACAA 61.040 50.000 0.00 0.00 0.00 2.83
531 537 0.033366 GCCGCAACTTTCCCAACAAT 59.967 50.000 0.00 0.00 0.00 2.71
532 538 1.271102 GCCGCAACTTTCCCAACAATA 59.729 47.619 0.00 0.00 0.00 1.90
533 539 2.288518 GCCGCAACTTTCCCAACAATAA 60.289 45.455 0.00 0.00 0.00 1.40
542 548 5.243060 ACTTTCCCAACAATAACACTAAGCC 59.757 40.000 0.00 0.00 0.00 4.35
639 646 2.509166 TCTTCACCGCTTCTCCTCTA 57.491 50.000 0.00 0.00 0.00 2.43
845 853 4.576879 ACGGATGAAAGGAAGGAAGTTAC 58.423 43.478 0.00 0.00 0.00 2.50
859 867 0.249398 AGTTACGCTGACCCACATCC 59.751 55.000 0.00 0.00 0.00 3.51
930 943 8.758633 ATATATACAATACAAGTGTCGGCTTC 57.241 34.615 0.00 0.00 0.00 3.86
1125 1139 2.097825 GGCTTCCTCTTACCTCGTACA 58.902 52.381 0.00 0.00 0.00 2.90
1141 1158 6.432162 ACCTCGTACACTCTTCTACAATGTTA 59.568 38.462 0.00 0.00 0.00 2.41
1142 1159 6.967767 CCTCGTACACTCTTCTACAATGTTAG 59.032 42.308 0.00 0.00 0.00 2.34
1157 1174 7.928307 ACAATGTTAGCTGTGATTTCAGTAT 57.072 32.000 0.00 0.00 37.70 2.12
1177 1194 7.550196 TCAGTATAGTAATATGTGCATGCATGG 59.450 37.037 25.64 10.03 0.00 3.66
1182 1199 4.948341 AATATGTGCATGCATGGATGTT 57.052 36.364 25.64 16.58 0.00 2.71
1190 1207 2.042686 TGCATGGATGTTAGCAGACC 57.957 50.000 0.00 0.00 32.48 3.85
1227 1244 5.721000 AGAGTCTTCTCATGGATCAAGAAGT 59.279 40.000 16.46 3.54 44.09 3.01
1262 1279 4.654091 CAACACTCAGGTTGGATTTTGT 57.346 40.909 0.00 0.00 43.39 2.83
1273 1290 8.700051 TCAGGTTGGATTTTGTTAGAAATTTCA 58.300 29.630 19.99 3.83 29.75 2.69
1883 1908 2.504244 GAGGACGTGTTCGAGGCG 60.504 66.667 0.00 4.28 40.62 5.52
3017 3106 3.119137 TGGAGATGATGTACAAGGACGTG 60.119 47.826 0.00 0.00 0.00 4.49
3194 3289 3.123804 GCGTTTCATGATCTACGTCCAT 58.876 45.455 19.85 0.00 36.45 3.41
3250 3352 0.109153 TGCCATGTCAACAGTGAGCT 59.891 50.000 0.00 0.00 33.27 4.09
3268 3370 4.111916 GAGCTTTGATGCTACTCTCACTC 58.888 47.826 0.00 0.00 44.17 3.51
3307 3409 1.246649 TTTGCATTGCAGTGGACGAT 58.753 45.000 11.76 0.00 40.61 3.73
3343 3445 1.173043 GATCGGCCAACATCAACCAA 58.827 50.000 2.24 0.00 0.00 3.67
3511 3613 2.680352 GTCGACCTCCTCCAGCCA 60.680 66.667 3.51 0.00 0.00 4.75
3736 3838 2.186903 CCCCCGATCCTCACAACG 59.813 66.667 0.00 0.00 0.00 4.10
3743 3845 1.986378 CGATCCTCACAACGTGAAGAC 59.014 52.381 0.00 0.00 42.26 3.01
3754 3856 2.088338 CGTGAAGACGTACGAGATCC 57.912 55.000 24.41 7.32 42.54 3.36
3765 3867 3.913763 CGTACGAGATCCTCTACGACTAG 59.086 52.174 10.44 0.00 38.52 2.57
3822 3938 4.944619 GATCAGGTGATCTGTACATGGA 57.055 45.455 11.98 0.00 45.60 3.41
3827 3943 5.660864 TCAGGTGATCTGTACATGGATTGTA 59.339 40.000 0.00 0.00 43.76 2.41
3829 3945 6.426025 CAGGTGATCTGTACATGGATTGTATG 59.574 42.308 0.00 0.00 42.63 2.39
3831 3947 6.767902 GGTGATCTGTACATGGATTGTATGTT 59.232 38.462 0.00 0.00 42.63 2.71
3844 3960 6.369340 TGGATTGTATGTTGTAAATTCGTCGT 59.631 34.615 0.00 0.00 0.00 4.34
3848 3964 3.863396 TGTTGTAAATTCGTCGTGTGG 57.137 42.857 0.00 0.00 0.00 4.17
3851 3967 3.374220 TGTAAATTCGTCGTGTGGACT 57.626 42.857 0.00 0.00 43.79 3.85
3852 3968 3.054166 TGTAAATTCGTCGTGTGGACTG 58.946 45.455 0.00 0.00 43.79 3.51
3857 3973 1.371758 CGTCGTGTGGACTGTGGAG 60.372 63.158 0.00 0.00 43.79 3.86
3866 3991 1.273781 TGGACTGTGGAGGATGGATGA 60.274 52.381 0.00 0.00 0.00 2.92
3873 3998 0.815615 GGAGGATGGATGAACGTGGC 60.816 60.000 0.00 0.00 0.00 5.01
3874 3999 0.179000 GAGGATGGATGAACGTGGCT 59.821 55.000 0.00 0.00 0.00 4.75
3923 4055 4.021719 ACAACTTGAGAATTGGGATTGCTG 60.022 41.667 0.00 0.00 0.00 4.41
3978 4114 8.753497 AAGTAAAATCATAATGAGGGTTCTCC 57.247 34.615 0.00 0.00 39.23 3.71
3993 4129 5.244189 GGTTCTCCCTCCTTTACTTTTCT 57.756 43.478 0.00 0.00 0.00 2.52
3994 4130 5.632118 GGTTCTCCCTCCTTTACTTTTCTT 58.368 41.667 0.00 0.00 0.00 2.52
3995 4131 6.069331 GGTTCTCCCTCCTTTACTTTTCTTT 58.931 40.000 0.00 0.00 0.00 2.52
3996 4132 6.550108 GGTTCTCCCTCCTTTACTTTTCTTTT 59.450 38.462 0.00 0.00 0.00 2.27
3997 4133 7.069578 GGTTCTCCCTCCTTTACTTTTCTTTTT 59.930 37.037 0.00 0.00 0.00 1.94
3998 4134 7.818997 TCTCCCTCCTTTACTTTTCTTTTTC 57.181 36.000 0.00 0.00 0.00 2.29
3999 4135 7.583625 TCTCCCTCCTTTACTTTTCTTTTTCT 58.416 34.615 0.00 0.00 0.00 2.52
4000 4136 7.720074 TCTCCCTCCTTTACTTTTCTTTTTCTC 59.280 37.037 0.00 0.00 0.00 2.87
4001 4137 7.583625 TCCCTCCTTTACTTTTCTTTTTCTCT 58.416 34.615 0.00 0.00 0.00 3.10
4002 4138 8.720537 TCCCTCCTTTACTTTTCTTTTTCTCTA 58.279 33.333 0.00 0.00 0.00 2.43
4003 4139 9.521841 CCCTCCTTTACTTTTCTTTTTCTCTAT 57.478 33.333 0.00 0.00 0.00 1.98
4006 4142 9.516546 TCCTTTACTTTTCTTTTTCTCTATCCC 57.483 33.333 0.00 0.00 0.00 3.85
4007 4143 9.297037 CCTTTACTTTTCTTTTTCTCTATCCCA 57.703 33.333 0.00 0.00 0.00 4.37
4029 4165 9.807921 TCCCATTTACAGAAAATAGAGTTTTCT 57.192 29.630 9.33 9.33 46.29 2.52
4087 4223 8.980481 AAACAAACAGAAAATAGAGAGAAGGA 57.020 30.769 0.00 0.00 0.00 3.36
4088 4224 8.980481 AACAAACAGAAAATAGAGAGAAGGAA 57.020 30.769 0.00 0.00 0.00 3.36
4089 4225 8.980481 ACAAACAGAAAATAGAGAGAAGGAAA 57.020 30.769 0.00 0.00 0.00 3.13
4090 4226 9.408648 ACAAACAGAAAATAGAGAGAAGGAAAA 57.591 29.630 0.00 0.00 0.00 2.29
4093 4229 9.853177 AACAGAAAATAGAGAGAAGGAAAAAGA 57.147 29.630 0.00 0.00 0.00 2.52
4094 4230 9.500785 ACAGAAAATAGAGAGAAGGAAAAAGAG 57.499 33.333 0.00 0.00 0.00 2.85
4095 4231 9.717942 CAGAAAATAGAGAGAAGGAAAAAGAGA 57.282 33.333 0.00 0.00 0.00 3.10
4123 4259 5.508200 AAAAATAGTCAGTGCGTTTGGAA 57.492 34.783 0.00 0.00 0.00 3.53
4124 4260 5.508200 AAAATAGTCAGTGCGTTTGGAAA 57.492 34.783 0.00 0.00 0.00 3.13
4125 4261 5.508200 AAATAGTCAGTGCGTTTGGAAAA 57.492 34.783 0.00 0.00 0.00 2.29
4126 4262 5.705609 AATAGTCAGTGCGTTTGGAAAAT 57.294 34.783 0.00 0.00 0.00 1.82
4127 4263 6.811253 AATAGTCAGTGCGTTTGGAAAATA 57.189 33.333 0.00 0.00 0.00 1.40
4128 4264 7.391148 AATAGTCAGTGCGTTTGGAAAATAT 57.609 32.000 0.00 0.00 0.00 1.28
4129 4265 5.705609 AGTCAGTGCGTTTGGAAAATATT 57.294 34.783 0.00 0.00 0.00 1.28
4130 4266 5.460646 AGTCAGTGCGTTTGGAAAATATTG 58.539 37.500 0.00 0.00 0.00 1.90
4131 4267 5.240623 AGTCAGTGCGTTTGGAAAATATTGA 59.759 36.000 0.00 0.00 0.00 2.57
4132 4268 5.918011 GTCAGTGCGTTTGGAAAATATTGAA 59.082 36.000 0.00 0.00 0.00 2.69
4133 4269 6.419413 GTCAGTGCGTTTGGAAAATATTGAAA 59.581 34.615 0.00 0.00 0.00 2.69
4134 4270 6.419413 TCAGTGCGTTTGGAAAATATTGAAAC 59.581 34.615 0.00 0.00 0.00 2.78
4135 4271 5.694458 AGTGCGTTTGGAAAATATTGAAACC 59.306 36.000 0.00 0.00 0.00 3.27
4136 4272 5.694458 GTGCGTTTGGAAAATATTGAAACCT 59.306 36.000 0.00 0.00 0.00 3.50
4137 4273 6.201997 GTGCGTTTGGAAAATATTGAAACCTT 59.798 34.615 0.00 0.00 0.00 3.50
4138 4274 6.763610 TGCGTTTGGAAAATATTGAAACCTTT 59.236 30.769 0.00 0.00 0.00 3.11
4139 4275 7.281100 TGCGTTTGGAAAATATTGAAACCTTTT 59.719 29.630 0.00 0.00 0.00 2.27
4140 4276 8.766151 GCGTTTGGAAAATATTGAAACCTTTTA 58.234 29.630 0.00 0.00 0.00 1.52
4150 4286 9.700831 AATATTGAAACCTTTTATGTAGAGCCT 57.299 29.630 0.00 0.00 0.00 4.58
4153 4289 8.506168 TTGAAACCTTTTATGTAGAGCCTATG 57.494 34.615 0.00 0.00 0.00 2.23
4154 4290 7.857456 TGAAACCTTTTATGTAGAGCCTATGA 58.143 34.615 0.00 0.00 0.00 2.15
4155 4291 8.494433 TGAAACCTTTTATGTAGAGCCTATGAT 58.506 33.333 0.00 0.00 0.00 2.45
4156 4292 9.343539 GAAACCTTTTATGTAGAGCCTATGATT 57.656 33.333 0.00 0.00 0.00 2.57
4157 4293 9.700831 AAACCTTTTATGTAGAGCCTATGATTT 57.299 29.630 0.00 0.00 0.00 2.17
4167 4303 9.309224 TGTAGAGCCTATGATTTATACTTAGCA 57.691 33.333 0.00 0.00 0.00 3.49
4192 4328 7.669089 AAAAATAGAAGTTTCACCCTGGAAA 57.331 32.000 0.00 0.00 34.56 3.13
4223 4359 1.595929 GTTGGAGGCGACGGTTTCA 60.596 57.895 0.00 0.00 0.00 2.69
4236 4373 4.089493 CGACGGTTTCATGTTATATAGGCG 59.911 45.833 0.00 0.00 0.00 5.52
4289 4428 8.270744 AGGCAGTTTAGATTACATCTTGAGAAT 58.729 33.333 0.00 0.00 40.76 2.40
4467 4615 7.931578 TGTTTAAACTCTTCAAAACTCCTCA 57.068 32.000 18.72 0.00 33.89 3.86
4493 4641 4.081862 GGTAAGGCCTTTGTAAAACCATCC 60.082 45.833 26.08 2.96 0.00 3.51
4535 4683 9.573133 GAGTGAATAAATCGAATGTCCAATTTT 57.427 29.630 0.00 0.00 0.00 1.82
4598 4746 2.064434 TGTGTTTGGTCCTTGCATGA 57.936 45.000 0.00 0.00 0.00 3.07
4649 4797 4.516698 GGCACCAAGATTATCACACCATAG 59.483 45.833 0.00 0.00 0.00 2.23
4695 4843 2.560105 GCCAAGCTCTTTCAACAAGGAT 59.440 45.455 0.00 0.00 0.00 3.24
4713 4861 5.329035 AGGATTGAACCCAAATGATTTCG 57.671 39.130 0.00 0.00 35.67 3.46
4716 4864 4.946478 TTGAACCCAAATGATTTCGGTT 57.054 36.364 17.83 17.83 39.50 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.071874 TCGCTGAGGGTGATCATTTTT 57.928 42.857 0.00 0.00 0.00 1.94
8 9 2.787473 TCGCTGAGGGTGATCATTTT 57.213 45.000 0.00 0.00 0.00 1.82
9 10 3.287867 AATCGCTGAGGGTGATCATTT 57.712 42.857 0.00 0.00 43.52 2.32
10 11 2.947652 CAAATCGCTGAGGGTGATCATT 59.052 45.455 0.00 0.00 43.52 2.57
11 12 2.569059 CAAATCGCTGAGGGTGATCAT 58.431 47.619 0.00 0.00 43.52 2.45
12 13 1.407299 CCAAATCGCTGAGGGTGATCA 60.407 52.381 0.00 0.00 43.52 2.92
13 14 1.303309 CCAAATCGCTGAGGGTGATC 58.697 55.000 0.00 0.00 43.52 2.92
14 15 0.749454 GCCAAATCGCTGAGGGTGAT 60.749 55.000 0.00 0.00 45.91 3.06
15 16 1.377202 GCCAAATCGCTGAGGGTGA 60.377 57.895 0.00 0.00 38.92 4.02
16 17 2.409870 GGCCAAATCGCTGAGGGTG 61.410 63.158 0.00 0.00 0.00 4.61
17 18 2.044946 GGCCAAATCGCTGAGGGT 60.045 61.111 0.00 0.00 0.00 4.34
18 19 1.379044 AAGGCCAAATCGCTGAGGG 60.379 57.895 5.01 0.00 0.00 4.30
19 20 1.660560 CCAAGGCCAAATCGCTGAGG 61.661 60.000 5.01 0.00 0.00 3.86
20 21 0.962356 ACCAAGGCCAAATCGCTGAG 60.962 55.000 5.01 0.00 0.00 3.35
21 22 0.539438 AACCAAGGCCAAATCGCTGA 60.539 50.000 5.01 0.00 0.00 4.26
22 23 0.318120 AAACCAAGGCCAAATCGCTG 59.682 50.000 5.01 0.00 0.00 5.18
23 24 0.603065 GAAACCAAGGCCAAATCGCT 59.397 50.000 5.01 0.00 0.00 4.93
24 25 0.316841 TGAAACCAAGGCCAAATCGC 59.683 50.000 5.01 0.00 0.00 4.58
25 26 4.339247 AGATATGAAACCAAGGCCAAATCG 59.661 41.667 5.01 0.00 0.00 3.34
26 27 5.859205 AGATATGAAACCAAGGCCAAATC 57.141 39.130 5.01 0.00 0.00 2.17
27 28 6.494835 GGATAGATATGAAACCAAGGCCAAAT 59.505 38.462 5.01 0.00 0.00 2.32
28 29 5.833131 GGATAGATATGAAACCAAGGCCAAA 59.167 40.000 5.01 0.00 0.00 3.28
29 30 5.103728 TGGATAGATATGAAACCAAGGCCAA 60.104 40.000 5.01 0.00 0.00 4.52
30 31 4.415179 TGGATAGATATGAAACCAAGGCCA 59.585 41.667 5.01 0.00 0.00 5.36
31 32 4.762251 GTGGATAGATATGAAACCAAGGCC 59.238 45.833 0.00 0.00 0.00 5.19
32 33 5.239525 GTGTGGATAGATATGAAACCAAGGC 59.760 44.000 0.00 0.00 0.00 4.35
33 34 6.484643 CAGTGTGGATAGATATGAAACCAAGG 59.515 42.308 0.00 0.00 0.00 3.61
34 35 6.484643 CCAGTGTGGATAGATATGAAACCAAG 59.515 42.308 0.00 0.00 40.96 3.61
35 36 6.356556 CCAGTGTGGATAGATATGAAACCAA 58.643 40.000 0.00 0.00 40.96 3.67
36 37 5.163205 CCCAGTGTGGATAGATATGAAACCA 60.163 44.000 0.00 0.00 40.96 3.67
37 38 5.308825 CCCAGTGTGGATAGATATGAAACC 58.691 45.833 0.00 0.00 40.96 3.27
38 39 4.757149 GCCCAGTGTGGATAGATATGAAAC 59.243 45.833 0.00 0.00 40.96 2.78
39 40 4.411869 TGCCCAGTGTGGATAGATATGAAA 59.588 41.667 0.00 0.00 40.96 2.69
40 41 3.973305 TGCCCAGTGTGGATAGATATGAA 59.027 43.478 0.00 0.00 40.96 2.57
41 42 3.580022 CTGCCCAGTGTGGATAGATATGA 59.420 47.826 0.00 0.00 40.96 2.15
42 43 3.326006 ACTGCCCAGTGTGGATAGATATG 59.674 47.826 0.00 0.00 40.96 1.78
43 44 3.580458 GACTGCCCAGTGTGGATAGATAT 59.420 47.826 5.53 0.00 40.96 1.63
44 45 2.965831 GACTGCCCAGTGTGGATAGATA 59.034 50.000 5.53 0.00 40.96 1.98
45 46 1.765314 GACTGCCCAGTGTGGATAGAT 59.235 52.381 5.53 0.00 40.96 1.98
46 47 1.195115 GACTGCCCAGTGTGGATAGA 58.805 55.000 5.53 0.00 40.96 1.98
47 48 0.179100 CGACTGCCCAGTGTGGATAG 60.179 60.000 5.53 0.00 40.96 2.08
48 49 0.613572 TCGACTGCCCAGTGTGGATA 60.614 55.000 5.53 0.00 40.96 2.59
49 50 1.267574 ATCGACTGCCCAGTGTGGAT 61.268 55.000 5.53 3.52 40.96 3.41
50 51 1.913262 ATCGACTGCCCAGTGTGGA 60.913 57.895 5.53 1.30 40.96 4.02
51 52 1.742880 CATCGACTGCCCAGTGTGG 60.743 63.158 5.53 0.00 42.66 4.17
52 53 0.603707 AACATCGACTGCCCAGTGTG 60.604 55.000 5.53 4.88 42.66 3.82
53 54 0.108585 AAACATCGACTGCCCAGTGT 59.891 50.000 5.53 0.00 42.66 3.55
54 55 1.732259 GTAAACATCGACTGCCCAGTG 59.268 52.381 5.53 0.00 42.66 3.66
55 56 1.338769 GGTAAACATCGACTGCCCAGT 60.339 52.381 0.00 0.00 45.84 4.00
56 57 1.066143 AGGTAAACATCGACTGCCCAG 60.066 52.381 0.00 0.00 0.00 4.45
57 58 0.981183 AGGTAAACATCGACTGCCCA 59.019 50.000 0.00 0.00 0.00 5.36
58 59 2.483188 CCTAGGTAAACATCGACTGCCC 60.483 54.545 0.00 0.00 0.00 5.36
59 60 2.483188 CCCTAGGTAAACATCGACTGCC 60.483 54.545 8.29 0.00 0.00 4.85
60 61 2.167900 ACCCTAGGTAAACATCGACTGC 59.832 50.000 8.29 0.00 32.11 4.40
61 62 5.301045 TCATACCCTAGGTAAACATCGACTG 59.699 44.000 8.29 0.00 41.85 3.51
62 63 5.452255 TCATACCCTAGGTAAACATCGACT 58.548 41.667 8.29 0.00 41.85 4.18
63 64 5.779529 TCATACCCTAGGTAAACATCGAC 57.220 43.478 8.29 0.00 41.85 4.20
64 65 5.303589 CCTTCATACCCTAGGTAAACATCGA 59.696 44.000 8.29 0.00 41.85 3.59
65 66 5.510861 CCCTTCATACCCTAGGTAAACATCG 60.511 48.000 8.29 0.00 41.85 3.84
66 67 5.745181 GCCCTTCATACCCTAGGTAAACATC 60.745 48.000 8.29 0.00 41.85 3.06
67 68 4.104261 GCCCTTCATACCCTAGGTAAACAT 59.896 45.833 8.29 0.00 41.85 2.71
68 69 3.457012 GCCCTTCATACCCTAGGTAAACA 59.543 47.826 8.29 0.00 41.85 2.83
69 70 3.181447 GGCCCTTCATACCCTAGGTAAAC 60.181 52.174 8.29 0.00 41.85 2.01
70 71 3.050835 GGCCCTTCATACCCTAGGTAAA 58.949 50.000 8.29 0.00 41.85 2.01
71 72 2.251872 AGGCCCTTCATACCCTAGGTAA 59.748 50.000 8.29 0.00 41.85 2.85
72 73 1.871006 AGGCCCTTCATACCCTAGGTA 59.129 52.381 8.29 0.70 42.80 3.08
73 74 0.648301 AGGCCCTTCATACCCTAGGT 59.352 55.000 8.29 0.00 40.16 3.08
74 75 1.353091 GAGGCCCTTCATACCCTAGG 58.647 60.000 0.06 0.06 0.00 3.02
75 76 0.969894 CGAGGCCCTTCATACCCTAG 59.030 60.000 0.00 0.00 0.00 3.02
76 77 0.471211 CCGAGGCCCTTCATACCCTA 60.471 60.000 0.00 0.00 0.00 3.53
77 78 1.766461 CCGAGGCCCTTCATACCCT 60.766 63.158 0.00 0.00 0.00 4.34
78 79 2.041206 GACCGAGGCCCTTCATACCC 62.041 65.000 0.00 0.00 0.00 3.69
79 80 1.446366 GACCGAGGCCCTTCATACC 59.554 63.158 0.00 0.00 0.00 2.73
80 81 1.335132 TGGACCGAGGCCCTTCATAC 61.335 60.000 0.00 0.00 0.00 2.39
81 82 0.399949 ATGGACCGAGGCCCTTCATA 60.400 55.000 0.00 0.00 0.00 2.15
82 83 1.694169 ATGGACCGAGGCCCTTCAT 60.694 57.895 0.00 0.00 0.00 2.57
83 84 2.285368 ATGGACCGAGGCCCTTCA 60.285 61.111 0.00 0.00 0.00 3.02
84 85 0.759436 TAGATGGACCGAGGCCCTTC 60.759 60.000 0.00 2.78 0.00 3.46
85 86 0.104934 ATAGATGGACCGAGGCCCTT 60.105 55.000 0.00 0.00 0.00 3.95
86 87 0.543174 GATAGATGGACCGAGGCCCT 60.543 60.000 0.00 0.00 0.00 5.19
87 88 1.545706 GGATAGATGGACCGAGGCCC 61.546 65.000 0.00 0.00 0.00 5.80
88 89 0.543174 AGGATAGATGGACCGAGGCC 60.543 60.000 0.00 0.00 0.00 5.19
89 90 0.605589 CAGGATAGATGGACCGAGGC 59.394 60.000 0.00 0.00 0.00 4.70
90 91 2.294449 TCAGGATAGATGGACCGAGG 57.706 55.000 0.00 0.00 0.00 4.63
91 92 3.119673 CGATTCAGGATAGATGGACCGAG 60.120 52.174 0.00 0.00 0.00 4.63
92 93 2.820197 CGATTCAGGATAGATGGACCGA 59.180 50.000 0.00 0.00 0.00 4.69
93 94 2.672478 GCGATTCAGGATAGATGGACCG 60.672 54.545 0.00 0.00 0.00 4.79
94 95 2.564947 AGCGATTCAGGATAGATGGACC 59.435 50.000 0.00 0.00 0.00 4.46
95 96 3.256879 TGAGCGATTCAGGATAGATGGAC 59.743 47.826 0.00 0.00 0.00 4.02
96 97 3.256879 GTGAGCGATTCAGGATAGATGGA 59.743 47.826 0.00 0.00 36.21 3.41
97 98 3.257873 AGTGAGCGATTCAGGATAGATGG 59.742 47.826 0.00 0.00 36.21 3.51
98 99 4.236147 CAGTGAGCGATTCAGGATAGATG 58.764 47.826 0.00 0.00 36.21 2.90
99 100 3.894427 ACAGTGAGCGATTCAGGATAGAT 59.106 43.478 0.00 0.00 36.21 1.98
100 101 3.067320 CACAGTGAGCGATTCAGGATAGA 59.933 47.826 0.00 0.00 36.21 1.98
101 102 3.181482 ACACAGTGAGCGATTCAGGATAG 60.181 47.826 7.81 0.00 36.21 2.08
102 103 2.760650 ACACAGTGAGCGATTCAGGATA 59.239 45.455 7.81 0.00 36.21 2.59
103 104 1.552337 ACACAGTGAGCGATTCAGGAT 59.448 47.619 7.81 0.00 36.21 3.24
104 105 0.969149 ACACAGTGAGCGATTCAGGA 59.031 50.000 7.81 0.00 36.21 3.86
105 106 1.067283 AGACACAGTGAGCGATTCAGG 60.067 52.381 7.81 0.00 36.21 3.86
106 107 2.257894 GAGACACAGTGAGCGATTCAG 58.742 52.381 7.81 0.00 36.21 3.02
107 108 1.613437 TGAGACACAGTGAGCGATTCA 59.387 47.619 7.81 0.00 0.00 2.57
108 109 2.257894 CTGAGACACAGTGAGCGATTC 58.742 52.381 7.81 0.00 41.30 2.52
109 110 1.067283 CCTGAGACACAGTGAGCGATT 60.067 52.381 7.81 0.00 44.40 3.34
110 111 0.529833 CCTGAGACACAGTGAGCGAT 59.470 55.000 7.81 0.00 44.40 4.58
111 112 1.527433 CCCTGAGACACAGTGAGCGA 61.527 60.000 7.81 0.00 44.40 4.93
112 113 1.080230 CCCTGAGACACAGTGAGCG 60.080 63.158 7.81 0.00 44.40 5.03
113 114 1.188219 TCCCCTGAGACACAGTGAGC 61.188 60.000 7.81 0.00 44.40 4.26
114 115 0.894141 CTCCCCTGAGACACAGTGAG 59.106 60.000 7.81 0.00 44.40 3.51
115 116 0.542938 CCTCCCCTGAGACACAGTGA 60.543 60.000 7.81 0.00 44.40 3.41
116 117 1.548357 CCCTCCCCTGAGACACAGTG 61.548 65.000 0.00 0.00 44.40 3.66
117 118 1.229336 CCCTCCCCTGAGACACAGT 60.229 63.158 0.00 0.00 44.40 3.55
118 119 1.229336 ACCCTCCCCTGAGACACAG 60.229 63.158 0.00 0.00 45.36 3.66
142 143 3.016499 GGTGAAAACCGACGCGTT 58.984 55.556 15.53 0.00 0.00 4.84
165 166 1.840650 CTCTCCCCTCATCGCCCAT 60.841 63.158 0.00 0.00 0.00 4.00
221 223 0.396435 ATGAGCCACAAACCGACTGA 59.604 50.000 0.00 0.00 0.00 3.41
226 228 1.238439 AGTTCATGAGCCACAAACCG 58.762 50.000 5.87 0.00 0.00 4.44
241 243 4.736307 ACGTGGTGCGAAATTAAAAAGTTC 59.264 37.500 0.00 0.00 44.77 3.01
245 247 4.030134 ACACGTGGTGCGAAATTAAAAA 57.970 36.364 21.57 0.00 44.77 1.94
250 252 0.736053 ACAACACGTGGTGCGAAATT 59.264 45.000 32.70 10.08 44.77 1.82
282 284 7.360113 ACTGCAAGGGAAAAATAGAAAGAAA 57.640 32.000 0.00 0.00 39.30 2.52
285 287 6.748132 TCAACTGCAAGGGAAAAATAGAAAG 58.252 36.000 0.00 0.00 39.30 2.62
297 303 3.118811 TCCAACTTTTTCAACTGCAAGGG 60.119 43.478 0.00 0.00 39.30 3.95
298 304 4.122143 TCCAACTTTTTCAACTGCAAGG 57.878 40.909 0.00 0.00 39.30 3.61
394 400 9.731819 TCTCACGAATATTGTATCAACTAAGAC 57.268 33.333 0.00 0.00 0.00 3.01
472 478 9.988815 ACTGGCATTTAAACACAATATACAAAA 57.011 25.926 0.00 0.00 0.00 2.44
475 481 9.674068 TCTACTGGCATTTAAACACAATATACA 57.326 29.630 0.00 0.00 0.00 2.29
476 482 9.931210 GTCTACTGGCATTTAAACACAATATAC 57.069 33.333 0.00 0.00 0.00 1.47
477 483 9.899661 AGTCTACTGGCATTTAAACACAATATA 57.100 29.630 0.00 0.00 0.00 0.86
478 484 8.677300 CAGTCTACTGGCATTTAAACACAATAT 58.323 33.333 2.01 0.00 40.20 1.28
479 485 7.880713 TCAGTCTACTGGCATTTAAACACAATA 59.119 33.333 10.11 0.00 43.91 1.90
480 486 6.714810 TCAGTCTACTGGCATTTAAACACAAT 59.285 34.615 10.11 0.00 43.91 2.71
481 487 6.058833 TCAGTCTACTGGCATTTAAACACAA 58.941 36.000 10.11 0.00 43.91 3.33
482 488 5.616270 TCAGTCTACTGGCATTTAAACACA 58.384 37.500 10.11 0.00 43.91 3.72
483 489 5.932303 TCTCAGTCTACTGGCATTTAAACAC 59.068 40.000 10.11 0.00 43.91 3.32
484 490 6.109156 TCTCAGTCTACTGGCATTTAAACA 57.891 37.500 10.11 0.00 43.91 2.83
485 491 7.044798 AGATCTCAGTCTACTGGCATTTAAAC 58.955 38.462 10.11 0.00 43.91 2.01
486 492 7.187824 AGATCTCAGTCTACTGGCATTTAAA 57.812 36.000 10.11 0.00 43.91 1.52
487 493 6.798427 AGATCTCAGTCTACTGGCATTTAA 57.202 37.500 10.11 0.00 43.91 1.52
488 494 6.015856 GCTAGATCTCAGTCTACTGGCATTTA 60.016 42.308 10.11 2.54 43.91 1.40
489 495 5.221422 GCTAGATCTCAGTCTACTGGCATTT 60.221 44.000 10.11 1.60 43.91 2.32
490 496 4.280677 GCTAGATCTCAGTCTACTGGCATT 59.719 45.833 10.11 0.00 43.91 3.56
491 497 3.826157 GCTAGATCTCAGTCTACTGGCAT 59.174 47.826 10.11 2.89 43.91 4.40
492 498 3.218453 GCTAGATCTCAGTCTACTGGCA 58.782 50.000 10.11 0.00 43.91 4.92
493 499 2.556622 GGCTAGATCTCAGTCTACTGGC 59.443 54.545 10.11 3.92 43.91 4.85
494 500 2.811431 CGGCTAGATCTCAGTCTACTGG 59.189 54.545 10.11 1.93 43.91 4.00
495 501 2.225491 GCGGCTAGATCTCAGTCTACTG 59.775 54.545 0.00 3.64 45.08 2.74
496 502 2.158740 TGCGGCTAGATCTCAGTCTACT 60.159 50.000 0.00 0.00 0.00 2.57
497 503 2.222886 TGCGGCTAGATCTCAGTCTAC 58.777 52.381 0.00 0.00 0.00 2.59
498 504 2.619177 GTTGCGGCTAGATCTCAGTCTA 59.381 50.000 0.00 0.00 0.00 2.59
499 505 1.407258 GTTGCGGCTAGATCTCAGTCT 59.593 52.381 0.00 0.00 0.00 3.24
500 506 1.407258 AGTTGCGGCTAGATCTCAGTC 59.593 52.381 0.00 0.00 0.00 3.51
501 507 1.479709 AGTTGCGGCTAGATCTCAGT 58.520 50.000 0.00 0.00 0.00 3.41
502 508 2.593346 AAGTTGCGGCTAGATCTCAG 57.407 50.000 0.00 0.00 0.00 3.35
503 509 2.418746 GGAAAGTTGCGGCTAGATCTCA 60.419 50.000 0.00 0.00 0.00 3.27
504 510 2.205911 GGAAAGTTGCGGCTAGATCTC 58.794 52.381 0.00 0.00 0.00 2.75
505 511 1.134371 GGGAAAGTTGCGGCTAGATCT 60.134 52.381 0.00 0.00 0.00 2.75
506 512 1.300481 GGGAAAGTTGCGGCTAGATC 58.700 55.000 0.00 0.00 0.00 2.75
507 513 0.618458 TGGGAAAGTTGCGGCTAGAT 59.382 50.000 0.00 0.00 0.00 1.98
508 514 0.398696 TTGGGAAAGTTGCGGCTAGA 59.601 50.000 0.00 0.00 0.00 2.43
509 515 0.521735 GTTGGGAAAGTTGCGGCTAG 59.478 55.000 0.00 0.00 0.00 3.42
510 516 0.179015 TGTTGGGAAAGTTGCGGCTA 60.179 50.000 0.00 0.00 0.00 3.93
511 517 1.040339 TTGTTGGGAAAGTTGCGGCT 61.040 50.000 0.00 0.00 0.00 5.52
512 518 0.033366 ATTGTTGGGAAAGTTGCGGC 59.967 50.000 0.00 0.00 0.00 6.53
513 519 3.243569 TGTTATTGTTGGGAAAGTTGCGG 60.244 43.478 0.00 0.00 0.00 5.69
514 520 3.733727 GTGTTATTGTTGGGAAAGTTGCG 59.266 43.478 0.00 0.00 0.00 4.85
515 521 4.944048 AGTGTTATTGTTGGGAAAGTTGC 58.056 39.130 0.00 0.00 0.00 4.17
516 522 6.640907 GCTTAGTGTTATTGTTGGGAAAGTTG 59.359 38.462 0.00 0.00 0.00 3.16
517 523 6.239204 GGCTTAGTGTTATTGTTGGGAAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
518 524 5.243060 GGCTTAGTGTTATTGTTGGGAAAGT 59.757 40.000 0.00 0.00 0.00 2.66
519 525 5.476945 AGGCTTAGTGTTATTGTTGGGAAAG 59.523 40.000 0.00 0.00 0.00 2.62
520 526 5.390387 AGGCTTAGTGTTATTGTTGGGAAA 58.610 37.500 0.00 0.00 0.00 3.13
521 527 4.993028 AGGCTTAGTGTTATTGTTGGGAA 58.007 39.130 0.00 0.00 0.00 3.97
522 528 4.650972 AGGCTTAGTGTTATTGTTGGGA 57.349 40.909 0.00 0.00 0.00 4.37
523 529 4.764823 TCAAGGCTTAGTGTTATTGTTGGG 59.235 41.667 0.00 0.00 0.00 4.12
524 530 5.473504 ACTCAAGGCTTAGTGTTATTGTTGG 59.526 40.000 0.00 0.00 0.00 3.77
525 531 6.373779 CACTCAAGGCTTAGTGTTATTGTTG 58.626 40.000 19.80 0.00 38.62 3.33
526 532 5.473504 CCACTCAAGGCTTAGTGTTATTGTT 59.526 40.000 23.17 0.00 41.25 2.83
527 533 5.003804 CCACTCAAGGCTTAGTGTTATTGT 58.996 41.667 23.17 4.70 41.25 2.71
528 534 5.003804 ACCACTCAAGGCTTAGTGTTATTG 58.996 41.667 23.17 15.37 41.25 1.90
529 535 5.242795 ACCACTCAAGGCTTAGTGTTATT 57.757 39.130 23.17 10.77 41.25 1.40
530 536 4.910458 ACCACTCAAGGCTTAGTGTTAT 57.090 40.909 23.17 13.05 41.25 1.89
531 537 5.730550 CATACCACTCAAGGCTTAGTGTTA 58.269 41.667 23.17 18.13 41.25 2.41
532 538 4.579869 CATACCACTCAAGGCTTAGTGTT 58.420 43.478 23.17 17.08 41.25 3.32
533 539 3.619979 GCATACCACTCAAGGCTTAGTGT 60.620 47.826 23.17 17.26 41.25 3.55
542 548 5.664457 TCTAGATGTTGCATACCACTCAAG 58.336 41.667 0.00 0.00 0.00 3.02
639 646 0.749454 CCCGCTGGCTGCTTTATCTT 60.749 55.000 14.58 0.00 40.11 2.40
845 853 3.047807 ATGGGGATGTGGGTCAGCG 62.048 63.158 0.00 0.00 32.65 5.18
859 867 2.232941 GCATGCAAGGATTATCCATGGG 59.767 50.000 16.79 3.41 39.61 4.00
955 969 4.564769 CGTCTTCTTCAACTATGGCTTCTC 59.435 45.833 0.00 0.00 0.00 2.87
962 976 4.399618 TCCTCCTCGTCTTCTTCAACTATG 59.600 45.833 0.00 0.00 0.00 2.23
1023 1037 1.305930 GGATCTTGGCGTCAACCACC 61.306 60.000 0.00 0.00 40.19 4.61
1125 1139 6.346477 TCACAGCTAACATTGTAGAAGAGT 57.654 37.500 0.00 0.00 0.00 3.24
1157 1174 6.240145 ACATCCATGCATGCACATATTACTA 58.760 36.000 25.37 0.00 0.00 1.82
1177 1194 5.348986 TCTTCATAACGGTCTGCTAACATC 58.651 41.667 0.00 0.00 0.00 3.06
1182 1199 4.948004 TCTCTTCTTCATAACGGTCTGCTA 59.052 41.667 0.00 0.00 0.00 3.49
1214 1231 5.125097 GCAGAATGACAACTTCTTGATCCAT 59.875 40.000 0.00 0.00 39.69 3.41
1227 1244 3.693578 TGAGTGTTGTTGCAGAATGACAA 59.306 39.130 0.00 0.00 39.69 3.18
1273 1290 6.223120 GTCAGGCATGGTTAAAAGTTTCAAT 58.777 36.000 0.00 0.00 0.00 2.57
1883 1908 2.511600 CTCCGGGCGTTGGTGATC 60.512 66.667 0.00 0.00 0.00 2.92
2234 2271 2.951745 CGGCTGCTGTCGACGATC 60.952 66.667 12.68 2.83 45.19 3.69
2600 2689 1.078426 GATGGACCGGAACACCTGG 60.078 63.158 9.46 0.00 0.00 4.45
2757 2846 5.448904 GGAAGTACTGGTTCTCGATGTAGAC 60.449 48.000 0.00 0.00 0.00 2.59
3033 3122 3.743017 GGCCTGGATGCCCTTGGA 61.743 66.667 0.00 0.00 46.11 3.53
3194 3289 3.118038 GGTTACCTATCATGGTCTTGGCA 60.118 47.826 0.00 0.00 41.22 4.92
3250 3352 5.186603 AGACATGAGTGAGAGTAGCATCAAA 59.813 40.000 0.00 0.00 0.00 2.69
3284 3386 3.254411 TCGTCCACTGCAATGCAAATAAA 59.746 39.130 9.92 0.00 38.41 1.40
3286 3388 2.431454 TCGTCCACTGCAATGCAAATA 58.569 42.857 9.92 0.00 38.41 1.40
3287 3389 1.246649 TCGTCCACTGCAATGCAAAT 58.753 45.000 9.92 0.00 38.41 2.32
3293 3395 3.118629 ACATACTCATCGTCCACTGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
3307 3409 2.293399 CGATCCCACGATGACATACTCA 59.707 50.000 0.00 0.00 35.09 3.41
3667 3769 0.328258 CCTTGGTGTCGGGGAAGAAT 59.672 55.000 0.00 0.00 0.00 2.40
3736 3838 3.322230 GAGGATCTCGTACGTCTTCAC 57.678 52.381 16.05 3.05 0.00 3.18
3754 3856 4.083537 GCAGTCATCATCCTAGTCGTAGAG 60.084 50.000 0.00 0.00 36.95 2.43
3765 3867 1.662629 CACAACGAGCAGTCATCATCC 59.337 52.381 0.00 0.00 0.00 3.51
3768 3870 1.613437 TCTCACAACGAGCAGTCATCA 59.387 47.619 0.00 0.00 41.98 3.07
3816 3928 8.050778 ACGAATTTACAACATACAATCCATGT 57.949 30.769 0.00 0.00 46.36 3.21
3822 3938 7.012943 CACACGACGAATTTACAACATACAAT 58.987 34.615 0.00 0.00 0.00 2.71
3827 3943 4.059511 TCCACACGACGAATTTACAACAT 58.940 39.130 0.00 0.00 0.00 2.71
3829 3945 3.492011 AGTCCACACGACGAATTTACAAC 59.508 43.478 0.00 0.00 46.92 3.32
3831 3947 3.054166 CAGTCCACACGACGAATTTACA 58.946 45.455 0.00 0.00 46.92 2.41
3844 3960 0.178906 TCCATCCTCCACAGTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
3848 3964 2.739932 CGTTCATCCATCCTCCACAGTC 60.740 54.545 0.00 0.00 0.00 3.51
3851 3967 1.066215 CACGTTCATCCATCCTCCACA 60.066 52.381 0.00 0.00 0.00 4.17
3852 3968 1.656652 CACGTTCATCCATCCTCCAC 58.343 55.000 0.00 0.00 0.00 4.02
3857 3973 0.107703 TCAGCCACGTTCATCCATCC 60.108 55.000 0.00 0.00 0.00 3.51
3873 3998 7.109006 AGTAAAACCGTTTATACACGTTCAG 57.891 36.000 10.31 0.00 38.57 3.02
3874 3999 8.755696 ATAGTAAAACCGTTTATACACGTTCA 57.244 30.769 10.31 0.00 38.57 3.18
3903 4035 3.094572 CCAGCAATCCCAATTCTCAAGT 58.905 45.455 0.00 0.00 0.00 3.16
3908 4040 1.188863 GCACCAGCAATCCCAATTCT 58.811 50.000 0.00 0.00 41.58 2.40
3952 4088 9.847224 GGAGAACCCTCATTATGATTTTACTTA 57.153 33.333 0.00 0.00 41.20 2.24
3971 4107 5.244189 AGAAAAGTAAAGGAGGGAGAACC 57.756 43.478 0.00 0.00 40.67 3.62
3972 4108 7.584122 AAAAGAAAAGTAAAGGAGGGAGAAC 57.416 36.000 0.00 0.00 0.00 3.01
3973 4109 8.059461 AGAAAAAGAAAAGTAAAGGAGGGAGAA 58.941 33.333 0.00 0.00 0.00 2.87
3974 4110 7.583625 AGAAAAAGAAAAGTAAAGGAGGGAGA 58.416 34.615 0.00 0.00 0.00 3.71
3975 4111 7.721842 AGAGAAAAAGAAAAGTAAAGGAGGGAG 59.278 37.037 0.00 0.00 0.00 4.30
3976 4112 7.583625 AGAGAAAAAGAAAAGTAAAGGAGGGA 58.416 34.615 0.00 0.00 0.00 4.20
3977 4113 7.825331 AGAGAAAAAGAAAAGTAAAGGAGGG 57.175 36.000 0.00 0.00 0.00 4.30
3980 4116 9.516546 GGGATAGAGAAAAAGAAAAGTAAAGGA 57.483 33.333 0.00 0.00 0.00 3.36
3981 4117 9.297037 TGGGATAGAGAAAAAGAAAAGTAAAGG 57.703 33.333 0.00 0.00 0.00 3.11
4003 4139 9.807921 AGAAAACTCTATTTTCTGTAAATGGGA 57.192 29.630 12.59 1.51 44.39 4.37
4061 4197 9.408648 TCCTTCTCTCTATTTTCTGTTTGTTTT 57.591 29.630 0.00 0.00 0.00 2.43
4062 4198 8.980481 TCCTTCTCTCTATTTTCTGTTTGTTT 57.020 30.769 0.00 0.00 0.00 2.83
4063 4199 8.980481 TTCCTTCTCTCTATTTTCTGTTTGTT 57.020 30.769 0.00 0.00 0.00 2.83
4064 4200 8.980481 TTTCCTTCTCTCTATTTTCTGTTTGT 57.020 30.769 0.00 0.00 0.00 2.83
4067 4203 9.853177 TCTTTTTCCTTCTCTCTATTTTCTGTT 57.147 29.630 0.00 0.00 0.00 3.16
4068 4204 9.500785 CTCTTTTTCCTTCTCTCTATTTTCTGT 57.499 33.333 0.00 0.00 0.00 3.41
4069 4205 9.717942 TCTCTTTTTCCTTCTCTCTATTTTCTG 57.282 33.333 0.00 0.00 0.00 3.02
4101 4237 5.508200 TTCCAAACGCACTGACTATTTTT 57.492 34.783 0.00 0.00 0.00 1.94
4102 4238 5.508200 TTTCCAAACGCACTGACTATTTT 57.492 34.783 0.00 0.00 0.00 1.82
4103 4239 5.508200 TTTTCCAAACGCACTGACTATTT 57.492 34.783 0.00 0.00 0.00 1.40
4104 4240 5.705609 ATTTTCCAAACGCACTGACTATT 57.294 34.783 0.00 0.00 0.00 1.73
4105 4241 7.120579 TCAATATTTTCCAAACGCACTGACTAT 59.879 33.333 0.00 0.00 0.00 2.12
4106 4242 6.428465 TCAATATTTTCCAAACGCACTGACTA 59.572 34.615 0.00 0.00 0.00 2.59
4107 4243 5.240623 TCAATATTTTCCAAACGCACTGACT 59.759 36.000 0.00 0.00 0.00 3.41
4108 4244 5.457140 TCAATATTTTCCAAACGCACTGAC 58.543 37.500 0.00 0.00 0.00 3.51
4109 4245 5.697473 TCAATATTTTCCAAACGCACTGA 57.303 34.783 0.00 0.00 0.00 3.41
4110 4246 6.346518 GGTTTCAATATTTTCCAAACGCACTG 60.347 38.462 0.00 0.00 0.00 3.66
4111 4247 5.694458 GGTTTCAATATTTTCCAAACGCACT 59.306 36.000 0.00 0.00 0.00 4.40
4112 4248 5.694458 AGGTTTCAATATTTTCCAAACGCAC 59.306 36.000 0.00 0.00 0.00 5.34
4113 4249 5.848406 AGGTTTCAATATTTTCCAAACGCA 58.152 33.333 0.00 0.00 0.00 5.24
4114 4250 6.779115 AAGGTTTCAATATTTTCCAAACGC 57.221 33.333 0.00 0.00 0.00 4.84
4124 4260 9.700831 AGGCTCTACATAAAAGGTTTCAATATT 57.299 29.630 0.00 0.00 0.00 1.28
4127 4263 9.125026 CATAGGCTCTACATAAAAGGTTTCAAT 57.875 33.333 0.00 0.00 0.00 2.57
4128 4264 8.325787 TCATAGGCTCTACATAAAAGGTTTCAA 58.674 33.333 0.00 0.00 0.00 2.69
4129 4265 7.857456 TCATAGGCTCTACATAAAAGGTTTCA 58.143 34.615 0.00 0.00 0.00 2.69
4130 4266 8.910351 ATCATAGGCTCTACATAAAAGGTTTC 57.090 34.615 0.00 0.00 0.00 2.78
4131 4267 9.700831 AAATCATAGGCTCTACATAAAAGGTTT 57.299 29.630 0.00 0.00 0.00 3.27
4141 4277 9.309224 TGCTAAGTATAAATCATAGGCTCTACA 57.691 33.333 0.00 0.00 0.00 2.74
4168 4304 7.497595 GTTTCCAGGGTGAAACTTCTATTTTT 58.502 34.615 8.89 0.00 46.72 1.94
4169 4305 7.050970 GTTTCCAGGGTGAAACTTCTATTTT 57.949 36.000 8.89 0.00 46.72 1.82
4170 4306 6.650427 GTTTCCAGGGTGAAACTTCTATTT 57.350 37.500 8.89 0.00 46.72 1.40
4178 4314 0.591659 GCTCGTTTCCAGGGTGAAAC 59.408 55.000 6.58 6.58 46.75 2.78
4179 4315 0.882927 CGCTCGTTTCCAGGGTGAAA 60.883 55.000 0.00 0.00 32.02 2.69
4180 4316 1.301401 CGCTCGTTTCCAGGGTGAA 60.301 57.895 0.00 0.00 0.00 3.18
4181 4317 1.180456 TACGCTCGTTTCCAGGGTGA 61.180 55.000 0.00 0.00 37.58 4.02
4182 4318 1.012486 GTACGCTCGTTTCCAGGGTG 61.012 60.000 0.00 0.00 37.58 4.61
4183 4319 1.291272 GTACGCTCGTTTCCAGGGT 59.709 57.895 0.00 0.00 40.04 4.34
4184 4320 1.447314 GGTACGCTCGTTTCCAGGG 60.447 63.158 0.00 0.00 0.00 4.45
4185 4321 0.458025 GAGGTACGCTCGTTTCCAGG 60.458 60.000 14.77 0.00 0.00 4.45
4186 4322 0.797249 CGAGGTACGCTCGTTTCCAG 60.797 60.000 19.49 7.66 39.25 3.86
4187 4323 1.210931 CGAGGTACGCTCGTTTCCA 59.789 57.895 19.49 0.00 39.25 3.53
4188 4324 4.068302 CGAGGTACGCTCGTTTCC 57.932 61.111 19.49 4.44 39.25 3.13
4194 4330 4.787999 CTCCAACGAGGTACGCTC 57.212 61.111 0.00 2.28 46.94 5.03
4223 4359 0.539986 CGCCCCCGCCTATATAACAT 59.460 55.000 0.00 0.00 0.00 2.71
4289 4428 9.913310 TCATCTCTATCTTCTCTCTTTACTTGA 57.087 33.333 0.00 0.00 0.00 3.02
4357 4500 2.291043 CCACCTGGGCCGAACTAGT 61.291 63.158 0.00 0.00 0.00 2.57
4443 4591 7.931578 TGAGGAGTTTTGAAGAGTTTAAACA 57.068 32.000 20.06 0.00 33.94 2.83
4481 4629 3.215151 TCAAGTTGCGGATGGTTTTACA 58.785 40.909 0.00 0.00 0.00 2.41
4493 4641 3.320626 TCACTCTCAAGATCAAGTTGCG 58.679 45.455 0.00 0.00 0.00 4.85
4535 4683 2.620115 CAGAGAAAGAGTTGCTGCCAAA 59.380 45.455 0.00 0.00 31.68 3.28
4570 4718 5.393027 GCAAGGACCAAACACATCGAAATAT 60.393 40.000 0.00 0.00 0.00 1.28
4649 4797 0.599558 TTGCAAGCAAGCTCCATGTC 59.400 50.000 2.89 0.00 34.99 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.