Multiple sequence alignment - TraesCS1D01G379100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G379100 chr1D 100.000 6763 0 0 1 6763 455110301 455103539 0.000000e+00 12490.0
1 TraesCS1D01G379100 chr1D 88.628 1064 93 15 2736 3780 455105501 455104447 0.000000e+00 1269.0
2 TraesCS1D01G379100 chr1D 88.628 1064 93 15 4801 5855 455107566 455106522 0.000000e+00 1269.0
3 TraesCS1D01G379100 chr1D 86.536 713 66 17 1937 2638 455106259 455105566 0.000000e+00 758.0
4 TraesCS1D01G379100 chr1D 86.536 713 66 17 4043 4736 455108365 455107664 0.000000e+00 758.0
5 TraesCS1D01G379100 chr1D 94.872 78 3 1 2666 2743 60409684 60409608 3.310000e-23 121.0
6 TraesCS1D01G379100 chr1A 91.610 1621 88 17 1 1600 549043650 549042057 0.000000e+00 2196.0
7 TraesCS1D01G379100 chr1A 92.904 1071 51 11 1594 2654 549034751 549033696 0.000000e+00 1533.0
8 TraesCS1D01G379100 chr1A 90.314 1146 78 17 4834 5960 549014604 549013473 0.000000e+00 1471.0
9 TraesCS1D01G379100 chr1A 87.427 1034 99 13 2771 3780 549014601 549013575 0.000000e+00 1160.0
10 TraesCS1D01G379100 chr1A 84.637 1087 103 35 4022 5089 549034420 549033379 0.000000e+00 1024.0
11 TraesCS1D01G379100 chr1A 85.425 741 73 20 1828 2554 548991938 548991219 0.000000e+00 737.0
12 TraesCS1D01G379100 chr1A 83.671 790 79 21 3018 3771 548990574 548989799 0.000000e+00 699.0
13 TraesCS1D01G379100 chr1A 83.291 796 86 25 5088 5851 548990574 548989794 0.000000e+00 689.0
14 TraesCS1D01G379100 chr1A 85.208 649 66 14 4019 4653 548991852 548991220 2.060000e-179 640.0
15 TraesCS1D01G379100 chr1A 95.041 242 11 1 3016 3256 549033340 549033099 4.950000e-101 379.0
16 TraesCS1D01G379100 chr1A 90.909 286 19 6 2736 3019 549033659 549033379 1.780000e-100 377.0
17 TraesCS1D01G379100 chr1A 85.285 333 40 6 931 1262 548992791 548992467 1.090000e-87 335.0
18 TraesCS1D01G379100 chr1A 86.751 317 20 9 1484 1780 548992266 548991952 3.910000e-87 333.0
19 TraesCS1D01G379100 chr1A 89.669 242 22 2 5086 5324 549033340 549033099 8.520000e-79 305.0
20 TraesCS1D01G379100 chr1A 89.637 193 11 5 1328 1520 548992448 548992265 3.150000e-58 237.0
21 TraesCS1D01G379100 chr1A 97.826 46 1 0 2558 2603 548991098 548991053 5.620000e-11 80.5
22 TraesCS1D01G379100 chr1B 92.486 732 30 11 1937 2654 625713847 625713127 0.000000e+00 1024.0
23 TraesCS1D01G379100 chr1B 84.232 983 87 34 4036 4987 625713854 625712909 0.000000e+00 894.0
24 TraesCS1D01G379100 chr1B 91.150 339 19 5 1408 1743 625714405 625714075 3.720000e-122 449.0
25 TraesCS1D01G379100 chr1B 93.191 235 13 1 1166 1397 625715000 625714766 6.490000e-90 342.0
26 TraesCS1D01G379100 chr1B 91.364 220 16 2 923 1142 625721231 625721015 1.430000e-76 298.0
27 TraesCS1D01G379100 chr1B 90.761 184 13 3 2736 2918 625713089 625712909 6.780000e-60 243.0
28 TraesCS1D01G379100 chr1B 95.395 152 6 1 1783 1934 625714089 625713939 2.440000e-59 241.0
29 TraesCS1D01G379100 chr1B 92.381 105 5 1 5856 5960 625712916 625712815 5.470000e-31 147.0
30 TraesCS1D01G379100 chr6D 94.981 518 10 2 5956 6471 197284714 197285217 0.000000e+00 798.0
31 TraesCS1D01G379100 chr6D 78.279 488 88 12 5123 5603 93452898 93453374 1.430000e-76 298.0
32 TraesCS1D01G379100 chr2D 98.973 292 2 1 6471 6761 89208127 89207836 7.770000e-144 521.0
33 TraesCS1D01G379100 chr2D 89.655 290 15 4 6472 6761 640011078 640011352 8.340000e-94 355.0
34 TraesCS1D01G379100 chr6A 78.112 498 91 12 5116 5606 115316428 115315942 3.960000e-77 300.0
35 TraesCS1D01G379100 chrUn 94.375 160 7 2 6602 6761 372562187 372562344 1.880000e-60 244.0
36 TraesCS1D01G379100 chrUn 88.793 116 13 0 6475 6590 102504086 102504201 7.070000e-30 143.0
37 TraesCS1D01G379100 chr2A 84.795 171 22 3 6263 6433 678064996 678065162 1.170000e-37 169.0
38 TraesCS1D01G379100 chr6B 87.097 124 14 2 6618 6740 102071184 102071062 9.150000e-29 139.0
39 TraesCS1D01G379100 chr6B 92.771 83 5 1 2666 2747 281337012 281337094 1.190000e-22 119.0
40 TraesCS1D01G379100 chr5B 87.097 124 14 2 6618 6740 400534738 400534616 9.150000e-29 139.0
41 TraesCS1D01G379100 chr5B 87.097 124 14 2 6618 6740 411036812 411036690 9.150000e-29 139.0
42 TraesCS1D01G379100 chr5B 94.872 78 4 0 2667 2744 243411124 243411201 9.210000e-24 122.0
43 TraesCS1D01G379100 chr5B 93.827 81 5 0 2667 2747 309808991 309809071 9.210000e-24 122.0
44 TraesCS1D01G379100 chr5B 96.000 75 3 0 2666 2740 574956518 574956444 9.210000e-24 122.0
45 TraesCS1D01G379100 chr3D 87.097 124 14 2 6618 6740 567544827 567544949 9.150000e-29 139.0
46 TraesCS1D01G379100 chr3B 86.290 124 15 2 6618 6740 40521937 40521815 4.260000e-27 134.0
47 TraesCS1D01G379100 chr3B 96.053 76 3 0 2667 2742 537691190 537691265 2.560000e-24 124.0
48 TraesCS1D01G379100 chr5A 84.559 136 17 4 6612 6746 9511486 9511618 1.530000e-26 132.0
49 TraesCS1D01G379100 chr4D 96.104 77 2 1 2667 2743 482703553 482703628 2.560000e-24 124.0
50 TraesCS1D01G379100 chr3A 95.000 80 3 1 2669 2748 523754156 523754078 2.560000e-24 124.0
51 TraesCS1D01G379100 chr5D 91.954 87 6 1 2666 2752 225256266 225256181 3.310000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G379100 chr1D 455103539 455110301 6762 True 12490.000000 12490 100.000000 1 6763 1 chr1D.!!$R2 6762
1 TraesCS1D01G379100 chr1D 455104447 455108365 3918 True 1013.500000 1269 87.582000 1937 5855 4 chr1D.!!$R3 3918
2 TraesCS1D01G379100 chr1A 549042057 549043650 1593 True 2196.000000 2196 91.610000 1 1600 1 chr1A.!!$R1 1599
3 TraesCS1D01G379100 chr1A 549013473 549014604 1131 True 1315.500000 1471 88.870500 2771 5960 2 chr1A.!!$R3 3189
4 TraesCS1D01G379100 chr1A 549033099 549034751 1652 True 723.600000 1533 90.632000 1594 5324 5 chr1A.!!$R4 3730
5 TraesCS1D01G379100 chr1A 548989794 548992791 2997 True 468.812500 737 87.136750 931 5851 8 chr1A.!!$R2 4920
6 TraesCS1D01G379100 chr1B 625712815 625715000 2185 True 477.142857 1024 91.370857 1166 5960 7 chr1B.!!$R2 4794
7 TraesCS1D01G379100 chr6D 197284714 197285217 503 False 798.000000 798 94.981000 5956 6471 1 chr6D.!!$F2 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 534 0.031716 CTCCTCATCTCCACAGGGGA 60.032 60.000 0.0 0.0 45.89 4.81 F
1377 1402 0.035056 CCGCCAAGGAAGGTTCATCT 60.035 55.000 0.0 0.0 45.00 2.90 F
2220 2750 3.795688 TTCTTCTGAACAGGCCTCATT 57.204 42.857 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2751 0.693049 ACCTCCTGCGGTCTCAAATT 59.307 50.000 0.0 0.0 29.14 1.82 R
2223 2753 1.001633 GTAACCTCCTGCGGTCTCAAA 59.998 52.381 0.0 0.0 35.89 2.69 R
5870 6712 6.805150 TCATAGTACCTGACCATCCATAGAT 58.195 40.000 0.0 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 9.499479 TTGAGAATCTCTTCATATTTCCTATGC 57.501 33.333 11.92 0.00 35.36 3.14
93 94 9.276590 CATATTTCCTATGCTGAAACTGATACA 57.723 33.333 0.00 0.00 34.77 2.29
137 138 1.887854 TCTTGACCACGAACATACGGA 59.112 47.619 0.00 0.00 37.61 4.69
156 157 3.186001 CGGATTATGCTCATGCTCTTGTC 59.814 47.826 0.00 0.00 40.48 3.18
243 244 5.109210 TCATGTACATCGTCACCTTCAATC 58.891 41.667 5.07 0.00 0.00 2.67
329 330 3.702048 GGGCGTGCCTGTACCTCA 61.702 66.667 11.25 0.00 36.10 3.86
332 333 2.391389 GCGTGCCTGTACCTCAAGC 61.391 63.158 0.00 0.00 34.38 4.01
360 361 1.031571 GCTCGCCATTTGTGGATCCA 61.032 55.000 11.44 11.44 0.00 3.41
364 365 0.965363 GCCATTTGTGGATCCACCGT 60.965 55.000 36.27 21.79 45.63 4.83
367 368 0.965363 ATTTGTGGATCCACCGTGGC 60.965 55.000 36.27 15.72 45.63 5.01
368 369 2.063015 TTTGTGGATCCACCGTGGCT 62.063 55.000 36.27 2.54 45.63 4.75
422 423 2.629656 CCTTCCAAGCCCAGTTGCG 61.630 63.158 0.00 0.00 36.02 4.85
424 425 4.577677 TCCAAGCCCAGTTGCGCA 62.578 61.111 5.66 5.66 36.02 6.09
441 442 0.747283 GCAGAGGCAGTGGATTCCTG 60.747 60.000 3.95 0.00 40.72 3.86
453 454 2.912956 TGGATTCCTGCTGGAGTAACTT 59.087 45.455 12.54 0.00 44.24 2.66
457 458 4.640771 TTCCTGCTGGAGTAACTTCAAT 57.359 40.909 12.54 0.00 44.24 2.57
470 471 4.487714 AACTTCAATAATGGAGCTCGGA 57.512 40.909 7.83 0.00 35.34 4.55
488 489 1.718280 GATTACCTCCCAGGACCGAT 58.282 55.000 0.00 0.00 37.67 4.18
490 491 0.337082 TTACCTCCCAGGACCGATGA 59.663 55.000 0.00 0.00 37.67 2.92
498 499 0.179089 CAGGACCGATGAAGAGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
533 534 0.031716 CTCCTCATCTCCACAGGGGA 60.032 60.000 0.00 0.00 45.89 4.81
549 550 1.817209 GGATGAGGTCCCAGTCGAC 59.183 63.158 7.70 7.70 41.50 4.20
555 556 1.141234 GGTCCCAGTCGACGAATCC 59.859 63.158 10.46 6.97 33.30 3.01
562 563 0.463295 AGTCGACGAATCCGGAGCTA 60.463 55.000 11.34 0.00 40.78 3.32
564 565 0.873054 TCGACGAATCCGGAGCTATC 59.127 55.000 11.34 4.35 40.78 2.08
613 614 0.830648 AGAAGGCCGGAAATCATCGA 59.169 50.000 5.05 0.00 0.00 3.59
676 677 0.532115 GCAAATGGCTAGGGTTGGTG 59.468 55.000 0.00 0.00 40.25 4.17
677 678 1.185315 CAAATGGCTAGGGTTGGTGG 58.815 55.000 0.00 0.00 0.00 4.61
695 696 4.096681 GGTGGGAGATGGGATTTTCTTTT 58.903 43.478 0.00 0.00 0.00 2.27
704 706 2.832129 GGGATTTTCTTTTGAGGGGGTC 59.168 50.000 0.00 0.00 0.00 4.46
706 708 1.989706 TTTTCTTTTGAGGGGGTCCG 58.010 50.000 0.00 0.00 38.33 4.79
731 733 7.391620 GGATTGTGGATAGGAACGGAATATTA 58.608 38.462 0.00 0.00 0.00 0.98
735 737 8.146053 TGTGGATAGGAACGGAATATTATGAT 57.854 34.615 0.00 0.00 0.00 2.45
745 747 5.243060 ACGGAATATTATGATGTCGGAGTGA 59.757 40.000 0.00 0.00 0.00 3.41
761 763 2.625790 GAGTGAGCCGATCTAAGGTGAT 59.374 50.000 0.00 0.00 0.00 3.06
770 772 5.509840 GCCGATCTAAGGTGATAATGTGTCT 60.510 44.000 0.00 0.00 0.00 3.41
847 849 5.736951 CCAGACATTTGGGGTGAATTTAA 57.263 39.130 0.00 0.00 34.46 1.52
896 900 4.286032 TGACTGAAGTGTGCCTAGGTAAAT 59.714 41.667 11.31 0.00 0.00 1.40
915 919 0.039180 TGACCGGAAGTCTGCCTAGA 59.961 55.000 9.46 0.00 46.46 2.43
916 920 0.741915 GACCGGAAGTCTGCCTAGAG 59.258 60.000 9.46 0.00 42.69 2.43
918 922 0.395862 CCGGAAGTCTGCCTAGAGGA 60.396 60.000 0.00 0.00 37.39 3.71
919 923 1.028905 CGGAAGTCTGCCTAGAGGAG 58.971 60.000 0.00 0.00 37.39 3.69
921 925 2.028876 GGAAGTCTGCCTAGAGGAGTC 58.971 57.143 0.00 0.00 37.39 3.36
967 988 1.447838 CCCGACCGAACCAGATGTG 60.448 63.158 0.00 0.00 0.00 3.21
1072 1094 0.616679 CCAAACCCTACTCTCCCCGA 60.617 60.000 0.00 0.00 0.00 5.14
1073 1095 1.497161 CAAACCCTACTCTCCCCGAT 58.503 55.000 0.00 0.00 0.00 4.18
1109 1131 3.733507 CTCCCCACGATCTCCCGGA 62.734 68.421 0.73 0.00 0.00 5.14
1126 1148 3.798954 GAGAGGATTCCGCCGCTGG 62.799 68.421 2.46 0.00 38.25 4.85
1195 1217 3.161450 ACCGCGCCCTATGGACAT 61.161 61.111 0.00 0.00 0.00 3.06
1218 1240 1.192146 CCAACCCTCAGAACTCCGGA 61.192 60.000 2.93 2.93 0.00 5.14
1227 1249 3.708220 GAACTCCGGAGCCTGCGAG 62.708 68.421 31.56 6.44 30.86 5.03
1264 1286 3.842923 CAGGCGCATCGTCCCTCT 61.843 66.667 10.83 0.00 28.67 3.69
1282 1304 0.737367 CTCGTTGCGCATGAGAAGGA 60.737 55.000 27.16 15.57 40.67 3.36
1377 1402 0.035056 CCGCCAAGGAAGGTTCATCT 60.035 55.000 0.00 0.00 45.00 2.90
1426 1801 4.024387 GTGTGTGGCAAATTTCGTTCTAGA 60.024 41.667 0.00 0.00 0.00 2.43
1591 2018 5.891551 ACACAGTGAACTACCAAGGAAAATT 59.108 36.000 7.81 0.00 0.00 1.82
1667 2097 7.455331 GCATAAAGGCTGCTAAAAATTACAG 57.545 36.000 0.00 0.00 36.68 2.74
1813 2243 9.162793 GTCAATTTTTGTCGAGATAATATGCTG 57.837 33.333 0.00 0.00 0.00 4.41
2220 2750 3.795688 TTCTTCTGAACAGGCCTCATT 57.204 42.857 0.00 0.00 0.00 2.57
2221 2751 4.908601 TTCTTCTGAACAGGCCTCATTA 57.091 40.909 0.00 0.00 0.00 1.90
2222 2752 4.908601 TCTTCTGAACAGGCCTCATTAA 57.091 40.909 0.00 0.00 0.00 1.40
2223 2753 5.441718 TCTTCTGAACAGGCCTCATTAAT 57.558 39.130 0.00 0.00 0.00 1.40
5868 6710 9.999009 TTGTGTAGTAGAAATGTAGAATCGTAG 57.001 33.333 0.00 0.00 0.00 3.51
5870 6712 8.127327 GTGTAGTAGAAATGTAGAATCGTAGCA 58.873 37.037 0.00 0.00 0.00 3.49
5905 6747 6.462628 GGTCAGGTACTATGAATTAGGTGGAC 60.463 46.154 3.37 0.00 36.02 4.02
5906 6748 5.301045 TCAGGTACTATGAATTAGGTGGACG 59.699 44.000 0.00 0.00 36.02 4.79
5907 6749 5.301045 CAGGTACTATGAATTAGGTGGACGA 59.699 44.000 0.00 0.00 36.02 4.20
5950 6792 1.682005 ACCCCATTGCCACGGATTG 60.682 57.895 0.00 0.00 0.00 2.67
6029 6871 1.146930 GGGATGATTCTGCCTCGCA 59.853 57.895 0.00 0.00 36.92 5.10
6030 6872 0.250640 GGGATGATTCTGCCTCGCAT 60.251 55.000 0.00 0.00 38.13 4.73
6031 6873 0.873054 GGATGATTCTGCCTCGCATG 59.127 55.000 0.00 0.00 38.13 4.06
6032 6874 1.541889 GGATGATTCTGCCTCGCATGA 60.542 52.381 0.00 0.00 38.13 3.07
6033 6875 2.424557 GATGATTCTGCCTCGCATGAT 58.575 47.619 0.00 0.00 38.13 2.45
6034 6876 1.875009 TGATTCTGCCTCGCATGATC 58.125 50.000 0.00 0.00 38.13 2.92
6035 6877 1.415289 TGATTCTGCCTCGCATGATCT 59.585 47.619 0.00 0.00 38.13 2.75
6036 6878 1.799403 GATTCTGCCTCGCATGATCTG 59.201 52.381 0.00 0.00 38.13 2.90
6061 6903 0.592247 CTGGCGATTTGTTATGGCGC 60.592 55.000 0.00 0.00 46.20 6.53
6115 6957 2.064762 CTGCTCTTTCCGACTCAAGTG 58.935 52.381 0.00 0.00 0.00 3.16
6174 7016 1.006102 CAGTGTGGGTCGTGTCTCC 60.006 63.158 0.00 0.00 0.00 3.71
6188 7032 3.139077 GTGTCTCCACGGTGAGAAAAAT 58.861 45.455 10.28 0.00 42.75 1.82
6310 7154 4.796495 GGTGGATGACGGGTGGGC 62.796 72.222 0.00 0.00 0.00 5.36
6321 7165 0.539669 CGGGTGGGCCTTCTTTTCTT 60.540 55.000 4.53 0.00 34.45 2.52
6344 7188 1.080298 GCCCAGATTTGCAGTGTGC 60.080 57.895 0.00 0.00 45.29 4.57
6480 7324 2.203070 CGGAGGCCGGGAGAATTG 60.203 66.667 2.18 0.00 44.15 2.32
6481 7325 2.731571 CGGAGGCCGGGAGAATTGA 61.732 63.158 2.18 0.00 44.15 2.57
6482 7326 1.839894 GGAGGCCGGGAGAATTGAT 59.160 57.895 2.18 0.00 0.00 2.57
6483 7327 0.183731 GGAGGCCGGGAGAATTGATT 59.816 55.000 2.18 0.00 0.00 2.57
6484 7328 1.410224 GGAGGCCGGGAGAATTGATTT 60.410 52.381 2.18 0.00 0.00 2.17
6485 7329 2.379005 GAGGCCGGGAGAATTGATTTT 58.621 47.619 2.18 0.00 0.00 1.82
6486 7330 3.551846 GAGGCCGGGAGAATTGATTTTA 58.448 45.455 2.18 0.00 0.00 1.52
6487 7331 3.951680 GAGGCCGGGAGAATTGATTTTAA 59.048 43.478 2.18 0.00 0.00 1.52
6488 7332 3.699538 AGGCCGGGAGAATTGATTTTAAC 59.300 43.478 2.18 0.00 0.00 2.01
6489 7333 3.181479 GGCCGGGAGAATTGATTTTAACC 60.181 47.826 2.18 0.00 0.00 2.85
6490 7334 3.181479 GCCGGGAGAATTGATTTTAACCC 60.181 47.826 2.18 0.00 0.00 4.11
6491 7335 3.383505 CCGGGAGAATTGATTTTAACCCC 59.616 47.826 0.00 0.00 33.29 4.95
6492 7336 3.383505 CGGGAGAATTGATTTTAACCCCC 59.616 47.826 0.00 0.00 33.29 5.40
6508 7352 4.394712 CCCCTGTTCGCTCGCCTT 62.395 66.667 0.00 0.00 0.00 4.35
6509 7353 2.358737 CCCTGTTCGCTCGCCTTT 60.359 61.111 0.00 0.00 0.00 3.11
6510 7354 2.680913 CCCTGTTCGCTCGCCTTTG 61.681 63.158 0.00 0.00 0.00 2.77
6511 7355 1.667830 CCTGTTCGCTCGCCTTTGA 60.668 57.895 0.00 0.00 0.00 2.69
6512 7356 1.021390 CCTGTTCGCTCGCCTTTGAT 61.021 55.000 0.00 0.00 0.00 2.57
6513 7357 0.371645 CTGTTCGCTCGCCTTTGATC 59.628 55.000 0.00 0.00 0.00 2.92
6514 7358 0.320334 TGTTCGCTCGCCTTTGATCA 60.320 50.000 0.00 0.00 0.00 2.92
6515 7359 1.009829 GTTCGCTCGCCTTTGATCAT 58.990 50.000 0.00 0.00 0.00 2.45
6516 7360 2.201732 GTTCGCTCGCCTTTGATCATA 58.798 47.619 0.00 0.00 0.00 2.15
6517 7361 2.802816 GTTCGCTCGCCTTTGATCATAT 59.197 45.455 0.00 0.00 0.00 1.78
6518 7362 3.934457 TCGCTCGCCTTTGATCATATA 57.066 42.857 0.00 0.00 0.00 0.86
6519 7363 3.575630 TCGCTCGCCTTTGATCATATAC 58.424 45.455 0.00 0.00 0.00 1.47
6520 7364 2.668457 CGCTCGCCTTTGATCATATACC 59.332 50.000 0.00 0.00 0.00 2.73
6521 7365 3.003480 GCTCGCCTTTGATCATATACCC 58.997 50.000 0.00 0.00 0.00 3.69
6522 7366 3.600388 CTCGCCTTTGATCATATACCCC 58.400 50.000 0.00 0.00 0.00 4.95
6523 7367 3.248024 TCGCCTTTGATCATATACCCCT 58.752 45.455 0.00 0.00 0.00 4.79
6524 7368 3.650942 TCGCCTTTGATCATATACCCCTT 59.349 43.478 0.00 0.00 0.00 3.95
6525 7369 4.104102 TCGCCTTTGATCATATACCCCTTT 59.896 41.667 0.00 0.00 0.00 3.11
6526 7370 4.455877 CGCCTTTGATCATATACCCCTTTC 59.544 45.833 0.00 0.00 0.00 2.62
6527 7371 5.635120 GCCTTTGATCATATACCCCTTTCT 58.365 41.667 0.00 0.00 0.00 2.52
6528 7372 6.071320 GCCTTTGATCATATACCCCTTTCTT 58.929 40.000 0.00 0.00 0.00 2.52
6529 7373 6.551227 GCCTTTGATCATATACCCCTTTCTTT 59.449 38.462 0.00 0.00 0.00 2.52
6530 7374 7.470563 GCCTTTGATCATATACCCCTTTCTTTG 60.471 40.741 0.00 0.00 0.00 2.77
6531 7375 6.959639 TTGATCATATACCCCTTTCTTTGC 57.040 37.500 0.00 0.00 0.00 3.68
6532 7376 6.266131 TGATCATATACCCCTTTCTTTGCT 57.734 37.500 0.00 0.00 0.00 3.91
6533 7377 6.672593 TGATCATATACCCCTTTCTTTGCTT 58.327 36.000 0.00 0.00 0.00 3.91
6534 7378 6.547141 TGATCATATACCCCTTTCTTTGCTTG 59.453 38.462 0.00 0.00 0.00 4.01
6535 7379 4.644685 TCATATACCCCTTTCTTTGCTTGC 59.355 41.667 0.00 0.00 0.00 4.01
6536 7380 1.627864 TACCCCTTTCTTTGCTTGCC 58.372 50.000 0.00 0.00 0.00 4.52
6537 7381 0.105504 ACCCCTTTCTTTGCTTGCCT 60.106 50.000 0.00 0.00 0.00 4.75
6538 7382 0.319405 CCCCTTTCTTTGCTTGCCTG 59.681 55.000 0.00 0.00 0.00 4.85
6539 7383 0.320160 CCCTTTCTTTGCTTGCCTGC 60.320 55.000 0.00 0.00 0.00 4.85
6540 7384 0.320160 CCTTTCTTTGCTTGCCTGCC 60.320 55.000 0.00 0.00 0.00 4.85
6541 7385 0.677842 CTTTCTTTGCTTGCCTGCCT 59.322 50.000 0.00 0.00 0.00 4.75
6542 7386 0.675633 TTTCTTTGCTTGCCTGCCTC 59.324 50.000 0.00 0.00 0.00 4.70
6543 7387 0.178981 TTCTTTGCTTGCCTGCCTCT 60.179 50.000 0.00 0.00 0.00 3.69
6544 7388 0.892358 TCTTTGCTTGCCTGCCTCTG 60.892 55.000 0.00 0.00 0.00 3.35
6545 7389 0.892358 CTTTGCTTGCCTGCCTCTGA 60.892 55.000 0.00 0.00 0.00 3.27
6546 7390 0.467844 TTTGCTTGCCTGCCTCTGAA 60.468 50.000 0.00 0.00 0.00 3.02
6547 7391 1.174712 TTGCTTGCCTGCCTCTGAAC 61.175 55.000 0.00 0.00 0.00 3.18
6548 7392 2.338785 GCTTGCCTGCCTCTGAACC 61.339 63.158 0.00 0.00 0.00 3.62
6549 7393 1.676967 CTTGCCTGCCTCTGAACCC 60.677 63.158 0.00 0.00 0.00 4.11
6550 7394 3.210012 TTGCCTGCCTCTGAACCCC 62.210 63.158 0.00 0.00 0.00 4.95
6551 7395 4.432741 GCCTGCCTCTGAACCCCC 62.433 72.222 0.00 0.00 0.00 5.40
6552 7396 2.612115 CCTGCCTCTGAACCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
6553 7397 2.674220 CCTGCCTCTGAACCCCCTC 61.674 68.421 0.00 0.00 0.00 4.30
6554 7398 1.920325 CTGCCTCTGAACCCCCTCA 60.920 63.158 0.00 0.00 0.00 3.86
6555 7399 1.463214 TGCCTCTGAACCCCCTCAA 60.463 57.895 0.00 0.00 0.00 3.02
6556 7400 0.846427 TGCCTCTGAACCCCCTCAAT 60.846 55.000 0.00 0.00 0.00 2.57
6557 7401 0.332972 GCCTCTGAACCCCCTCAATT 59.667 55.000 0.00 0.00 0.00 2.32
6558 7402 1.683319 GCCTCTGAACCCCCTCAATTC 60.683 57.143 0.00 0.00 0.00 2.17
6559 7403 1.918957 CCTCTGAACCCCCTCAATTCT 59.081 52.381 0.00 0.00 0.00 2.40
6560 7404 2.356535 CCTCTGAACCCCCTCAATTCTG 60.357 54.545 0.00 0.00 0.00 3.02
6561 7405 2.307098 CTCTGAACCCCCTCAATTCTGT 59.693 50.000 0.00 0.00 0.00 3.41
6562 7406 2.305927 TCTGAACCCCCTCAATTCTGTC 59.694 50.000 0.00 0.00 0.00 3.51
6563 7407 2.307098 CTGAACCCCCTCAATTCTGTCT 59.693 50.000 0.00 0.00 0.00 3.41
6564 7408 3.519510 CTGAACCCCCTCAATTCTGTCTA 59.480 47.826 0.00 0.00 0.00 2.59
6565 7409 3.263425 TGAACCCCCTCAATTCTGTCTAC 59.737 47.826 0.00 0.00 0.00 2.59
6566 7410 3.207044 ACCCCCTCAATTCTGTCTACT 57.793 47.619 0.00 0.00 0.00 2.57
6567 7411 3.532102 ACCCCCTCAATTCTGTCTACTT 58.468 45.455 0.00 0.00 0.00 2.24
6568 7412 3.519913 ACCCCCTCAATTCTGTCTACTTC 59.480 47.826 0.00 0.00 0.00 3.01
6569 7413 3.777522 CCCCCTCAATTCTGTCTACTTCT 59.222 47.826 0.00 0.00 0.00 2.85
6570 7414 4.226168 CCCCCTCAATTCTGTCTACTTCTT 59.774 45.833 0.00 0.00 0.00 2.52
6571 7415 5.181748 CCCCTCAATTCTGTCTACTTCTTG 58.818 45.833 0.00 0.00 0.00 3.02
6572 7416 4.633565 CCCTCAATTCTGTCTACTTCTTGC 59.366 45.833 0.00 0.00 0.00 4.01
6573 7417 5.486526 CCTCAATTCTGTCTACTTCTTGCT 58.513 41.667 0.00 0.00 0.00 3.91
6574 7418 5.350914 CCTCAATTCTGTCTACTTCTTGCTG 59.649 44.000 0.00 0.00 0.00 4.41
6575 7419 6.101650 TCAATTCTGTCTACTTCTTGCTGA 57.898 37.500 0.00 0.00 0.00 4.26
6576 7420 6.705302 TCAATTCTGTCTACTTCTTGCTGAT 58.295 36.000 0.00 0.00 0.00 2.90
6577 7421 7.164122 TCAATTCTGTCTACTTCTTGCTGATT 58.836 34.615 0.00 0.00 0.00 2.57
6578 7422 6.981762 ATTCTGTCTACTTCTTGCTGATTG 57.018 37.500 0.00 0.00 0.00 2.67
6579 7423 4.248859 TCTGTCTACTTCTTGCTGATTGC 58.751 43.478 0.00 0.00 43.25 3.56
6580 7424 3.338249 TGTCTACTTCTTGCTGATTGCC 58.662 45.455 0.00 0.00 42.00 4.52
6581 7425 2.680339 GTCTACTTCTTGCTGATTGCCC 59.320 50.000 0.00 0.00 42.00 5.36
6582 7426 2.019984 CTACTTCTTGCTGATTGCCCC 58.980 52.381 0.00 0.00 42.00 5.80
6583 7427 0.613012 ACTTCTTGCTGATTGCCCCC 60.613 55.000 0.00 0.00 42.00 5.40
6584 7428 0.324091 CTTCTTGCTGATTGCCCCCT 60.324 55.000 0.00 0.00 42.00 4.79
6585 7429 0.114954 TTCTTGCTGATTGCCCCCTT 59.885 50.000 0.00 0.00 42.00 3.95
6586 7430 0.114954 TCTTGCTGATTGCCCCCTTT 59.885 50.000 0.00 0.00 42.00 3.11
6587 7431 0.248289 CTTGCTGATTGCCCCCTTTG 59.752 55.000 0.00 0.00 42.00 2.77
6588 7432 1.193462 TTGCTGATTGCCCCCTTTGG 61.193 55.000 0.00 0.00 42.00 3.28
6598 7442 2.760634 CCCCCTTTGGCATGTTTAAC 57.239 50.000 0.00 0.00 0.00 2.01
6599 7443 1.974236 CCCCCTTTGGCATGTTTAACA 59.026 47.619 0.00 0.00 0.00 2.41
6600 7444 2.370189 CCCCCTTTGGCATGTTTAACAA 59.630 45.455 0.66 0.00 0.00 2.83
6601 7445 3.181450 CCCCCTTTGGCATGTTTAACAAA 60.181 43.478 0.66 0.00 0.00 2.83
6602 7446 4.506448 CCCCCTTTGGCATGTTTAACAAAT 60.506 41.667 0.66 0.00 32.99 2.32
6603 7447 5.069318 CCCCTTTGGCATGTTTAACAAATT 58.931 37.500 0.66 0.00 32.99 1.82
6604 7448 5.534278 CCCCTTTGGCATGTTTAACAAATTT 59.466 36.000 0.66 0.00 32.99 1.82
6605 7449 6.437094 CCCTTTGGCATGTTTAACAAATTTG 58.563 36.000 16.67 16.67 32.99 2.32
6606 7450 6.039159 CCCTTTGGCATGTTTAACAAATTTGT 59.961 34.615 18.13 18.13 44.72 2.83
6607 7451 7.131565 CCTTTGGCATGTTTAACAAATTTGTC 58.868 34.615 23.47 11.89 41.31 3.18
6608 7452 7.201679 CCTTTGGCATGTTTAACAAATTTGTCA 60.202 33.333 23.47 16.87 41.31 3.58
6609 7453 6.841443 TGGCATGTTTAACAAATTTGTCAG 57.159 33.333 23.47 11.68 41.31 3.51
6610 7454 6.344500 TGGCATGTTTAACAAATTTGTCAGT 58.656 32.000 23.47 11.33 41.31 3.41
6611 7455 7.492524 TGGCATGTTTAACAAATTTGTCAGTA 58.507 30.769 23.47 10.33 41.31 2.74
6612 7456 8.147058 TGGCATGTTTAACAAATTTGTCAGTAT 58.853 29.630 23.47 10.62 41.31 2.12
6613 7457 9.632807 GGCATGTTTAACAAATTTGTCAGTATA 57.367 29.630 23.47 9.62 41.31 1.47
6623 7467 9.125026 ACAAATTTGTCAGTATATCAATCTCCC 57.875 33.333 18.13 0.00 36.50 4.30
6624 7468 9.347240 CAAATTTGTCAGTATATCAATCTCCCT 57.653 33.333 10.15 0.00 0.00 4.20
6625 7469 9.566432 AAATTTGTCAGTATATCAATCTCCCTC 57.434 33.333 0.00 0.00 0.00 4.30
6626 7470 7.675161 TTTGTCAGTATATCAATCTCCCTCA 57.325 36.000 0.00 0.00 0.00 3.86
6627 7471 6.907853 TGTCAGTATATCAATCTCCCTCAG 57.092 41.667 0.00 0.00 0.00 3.35
6628 7472 5.244851 TGTCAGTATATCAATCTCCCTCAGC 59.755 44.000 0.00 0.00 0.00 4.26
6629 7473 5.244851 GTCAGTATATCAATCTCCCTCAGCA 59.755 44.000 0.00 0.00 0.00 4.41
6630 7474 5.244851 TCAGTATATCAATCTCCCTCAGCAC 59.755 44.000 0.00 0.00 0.00 4.40
6631 7475 4.530161 AGTATATCAATCTCCCTCAGCACC 59.470 45.833 0.00 0.00 0.00 5.01
6632 7476 1.890552 ATCAATCTCCCTCAGCACCT 58.109 50.000 0.00 0.00 0.00 4.00
6633 7477 2.550277 TCAATCTCCCTCAGCACCTA 57.450 50.000 0.00 0.00 0.00 3.08
6634 7478 2.392662 TCAATCTCCCTCAGCACCTAG 58.607 52.381 0.00 0.00 0.00 3.02
6635 7479 1.415659 CAATCTCCCTCAGCACCTAGG 59.584 57.143 7.41 7.41 0.00 3.02
6638 7482 4.153957 CCCTCAGCACCTAGGGTT 57.846 61.111 14.81 0.00 46.45 4.11
6639 7483 2.387952 CCCTCAGCACCTAGGGTTT 58.612 57.895 14.81 0.00 46.45 3.27
6640 7484 0.253327 CCCTCAGCACCTAGGGTTTC 59.747 60.000 14.81 0.00 46.45 2.78
6641 7485 1.280457 CCTCAGCACCTAGGGTTTCT 58.720 55.000 14.81 1.06 31.02 2.52
6642 7486 2.467880 CCTCAGCACCTAGGGTTTCTA 58.532 52.381 14.81 0.00 31.02 2.10
6643 7487 2.168728 CCTCAGCACCTAGGGTTTCTAC 59.831 54.545 14.81 0.00 31.02 2.59
6644 7488 2.832129 CTCAGCACCTAGGGTTTCTACA 59.168 50.000 14.81 0.00 31.02 2.74
6645 7489 3.244582 TCAGCACCTAGGGTTTCTACAA 58.755 45.455 14.81 0.00 31.02 2.41
6646 7490 3.844211 TCAGCACCTAGGGTTTCTACAAT 59.156 43.478 14.81 0.00 31.02 2.71
6647 7491 4.288626 TCAGCACCTAGGGTTTCTACAATT 59.711 41.667 14.81 0.00 31.02 2.32
6648 7492 5.010282 CAGCACCTAGGGTTTCTACAATTT 58.990 41.667 14.81 0.00 31.02 1.82
6649 7493 6.013206 TCAGCACCTAGGGTTTCTACAATTTA 60.013 38.462 14.81 0.00 31.02 1.40
6650 7494 6.316390 CAGCACCTAGGGTTTCTACAATTTAG 59.684 42.308 14.81 0.00 31.02 1.85
6651 7495 6.214819 AGCACCTAGGGTTTCTACAATTTAGA 59.785 38.462 14.81 0.00 31.02 2.10
6652 7496 6.315642 GCACCTAGGGTTTCTACAATTTAGAC 59.684 42.308 14.81 0.00 31.02 2.59
6653 7497 7.391620 CACCTAGGGTTTCTACAATTTAGACA 58.608 38.462 14.81 0.00 31.02 3.41
6654 7498 7.881232 CACCTAGGGTTTCTACAATTTAGACAA 59.119 37.037 14.81 0.00 31.02 3.18
6655 7499 8.612145 ACCTAGGGTTTCTACAATTTAGACAAT 58.388 33.333 14.81 0.00 27.29 2.71
6656 7500 9.110502 CCTAGGGTTTCTACAATTTAGACAATC 57.889 37.037 0.00 0.00 0.00 2.67
6657 7501 7.611213 AGGGTTTCTACAATTTAGACAATCG 57.389 36.000 0.00 0.00 0.00 3.34
6658 7502 7.166167 AGGGTTTCTACAATTTAGACAATCGT 58.834 34.615 0.00 0.00 0.00 3.73
6659 7503 8.316214 AGGGTTTCTACAATTTAGACAATCGTA 58.684 33.333 0.00 0.00 0.00 3.43
6660 7504 8.385858 GGGTTTCTACAATTTAGACAATCGTAC 58.614 37.037 0.00 0.00 0.00 3.67
6661 7505 8.385858 GGTTTCTACAATTTAGACAATCGTACC 58.614 37.037 0.00 0.00 0.00 3.34
6662 7506 8.928733 GTTTCTACAATTTAGACAATCGTACCA 58.071 33.333 0.00 0.00 0.00 3.25
6663 7507 8.470040 TTCTACAATTTAGACAATCGTACCAC 57.530 34.615 0.00 0.00 0.00 4.16
6664 7508 7.604549 TCTACAATTTAGACAATCGTACCACA 58.395 34.615 0.00 0.00 0.00 4.17
6665 7509 6.721571 ACAATTTAGACAATCGTACCACAG 57.278 37.500 0.00 0.00 0.00 3.66
6666 7510 5.642063 ACAATTTAGACAATCGTACCACAGG 59.358 40.000 0.00 0.00 0.00 4.00
6667 7511 5.670792 ATTTAGACAATCGTACCACAGGA 57.329 39.130 0.00 0.00 0.00 3.86
6668 7512 4.445452 TTAGACAATCGTACCACAGGAC 57.555 45.455 0.00 0.00 0.00 3.85
6669 7513 1.549170 AGACAATCGTACCACAGGACC 59.451 52.381 0.00 0.00 0.00 4.46
6670 7514 1.274167 GACAATCGTACCACAGGACCA 59.726 52.381 0.00 0.00 0.00 4.02
6671 7515 1.001633 ACAATCGTACCACAGGACCAC 59.998 52.381 0.00 0.00 0.00 4.16
6672 7516 1.001520 CAATCGTACCACAGGACCACA 59.998 52.381 0.00 0.00 0.00 4.17
6673 7517 0.606604 ATCGTACCACAGGACCACAC 59.393 55.000 0.00 0.00 0.00 3.82
6674 7518 0.756070 TCGTACCACAGGACCACACA 60.756 55.000 0.00 0.00 0.00 3.72
6675 7519 0.105224 CGTACCACAGGACCACACAA 59.895 55.000 0.00 0.00 0.00 3.33
6676 7520 1.473610 CGTACCACAGGACCACACAAA 60.474 52.381 0.00 0.00 0.00 2.83
6677 7521 2.218603 GTACCACAGGACCACACAAAG 58.781 52.381 0.00 0.00 0.00 2.77
6678 7522 0.623723 ACCACAGGACCACACAAAGT 59.376 50.000 0.00 0.00 0.00 2.66
6679 7523 1.308998 CCACAGGACCACACAAAGTC 58.691 55.000 0.00 0.00 0.00 3.01
6684 7528 2.317230 GACCACACAAAGTCCACGG 58.683 57.895 0.00 0.00 0.00 4.94
6685 7529 0.179067 GACCACACAAAGTCCACGGA 60.179 55.000 0.00 0.00 0.00 4.69
6686 7530 0.253610 ACCACACAAAGTCCACGGAA 59.746 50.000 0.00 0.00 0.00 4.30
6687 7531 1.340211 ACCACACAAAGTCCACGGAAA 60.340 47.619 0.00 0.00 0.00 3.13
6688 7532 1.746220 CCACACAAAGTCCACGGAAAA 59.254 47.619 0.00 0.00 0.00 2.29
6689 7533 2.478879 CCACACAAAGTCCACGGAAAAC 60.479 50.000 0.00 0.00 0.00 2.43
6699 7543 2.751688 CGGAAAACGGAAGGGGGA 59.248 61.111 0.00 0.00 39.42 4.81
6700 7544 1.073548 CGGAAAACGGAAGGGGGAA 59.926 57.895 0.00 0.00 39.42 3.97
6701 7545 0.537828 CGGAAAACGGAAGGGGGAAA 60.538 55.000 0.00 0.00 39.42 3.13
6702 7546 1.254026 GGAAAACGGAAGGGGGAAAG 58.746 55.000 0.00 0.00 0.00 2.62
6703 7547 0.601558 GAAAACGGAAGGGGGAAAGC 59.398 55.000 0.00 0.00 0.00 3.51
6704 7548 0.187606 AAAACGGAAGGGGGAAAGCT 59.812 50.000 0.00 0.00 0.00 3.74
6705 7549 0.187606 AAACGGAAGGGGGAAAGCTT 59.812 50.000 0.00 0.00 0.00 3.74
6706 7550 0.539669 AACGGAAGGGGGAAAGCTTG 60.540 55.000 0.00 0.00 0.00 4.01
6707 7551 2.343426 CGGAAGGGGGAAAGCTTGC 61.343 63.158 0.00 0.00 0.00 4.01
6708 7552 1.984570 GGAAGGGGGAAAGCTTGCC 60.985 63.158 16.07 16.07 40.98 4.52
6709 7553 1.077445 GAAGGGGGAAAGCTTGCCT 59.923 57.895 23.33 2.61 41.52 4.75
6710 7554 0.542938 GAAGGGGGAAAGCTTGCCTT 60.543 55.000 23.33 9.84 41.52 4.35
6711 7555 0.783850 AAGGGGGAAAGCTTGCCTTA 59.216 50.000 23.33 0.00 41.52 2.69
6712 7556 0.039764 AGGGGGAAAGCTTGCCTTAC 59.960 55.000 23.33 13.26 41.52 2.34
6713 7557 0.970937 GGGGGAAAGCTTGCCTTACC 60.971 60.000 23.33 18.07 41.52 2.85
6714 7558 0.039764 GGGGAAAGCTTGCCTTACCT 59.960 55.000 23.33 0.00 41.52 3.08
6715 7559 1.550179 GGGGAAAGCTTGCCTTACCTT 60.550 52.381 23.33 0.00 41.52 3.50
6716 7560 1.546029 GGGAAAGCTTGCCTTACCTTG 59.454 52.381 23.33 0.00 38.27 3.61
6717 7561 1.546029 GGAAAGCTTGCCTTACCTTGG 59.454 52.381 17.13 0.00 32.20 3.61
6718 7562 1.546029 GAAAGCTTGCCTTACCTTGGG 59.454 52.381 0.00 0.00 32.20 4.12
6719 7563 0.251787 AAGCTTGCCTTACCTTGGGG 60.252 55.000 0.00 0.00 38.88 4.96
6720 7564 2.351244 GCTTGCCTTACCTTGGGGC 61.351 63.158 0.00 0.00 45.45 5.80
6723 7567 2.755876 GCCTTACCTTGGGGCAGC 60.756 66.667 0.00 0.00 44.69 5.25
6724 7568 2.763215 CCTTACCTTGGGGCAGCA 59.237 61.111 0.00 0.00 35.63 4.41
6725 7569 1.076549 CCTTACCTTGGGGCAGCAA 59.923 57.895 0.00 0.00 35.63 3.91
6726 7570 0.324645 CCTTACCTTGGGGCAGCAAT 60.325 55.000 0.00 0.00 35.63 3.56
6727 7571 0.819582 CTTACCTTGGGGCAGCAATG 59.180 55.000 0.00 0.00 35.63 2.82
6728 7572 0.614415 TTACCTTGGGGCAGCAATGG 60.614 55.000 0.00 0.00 35.63 3.16
6729 7573 1.505151 TACCTTGGGGCAGCAATGGA 61.505 55.000 0.00 0.00 35.63 3.41
6730 7574 2.056223 CCTTGGGGCAGCAATGGAG 61.056 63.158 0.00 0.00 0.00 3.86
6731 7575 2.037687 TTGGGGCAGCAATGGAGG 59.962 61.111 0.00 0.00 0.00 4.30
6732 7576 3.605412 TTGGGGCAGCAATGGAGGG 62.605 63.158 0.00 0.00 0.00 4.30
6740 7584 4.569180 CAATGGAGGGCGGCGGAT 62.569 66.667 9.78 0.00 0.00 4.18
6741 7585 3.809013 AATGGAGGGCGGCGGATT 61.809 61.111 9.78 0.00 0.00 3.01
6742 7586 4.569180 ATGGAGGGCGGCGGATTG 62.569 66.667 9.78 0.00 0.00 2.67
6753 7597 4.440829 CGGATTGGGGGTGGGGTG 62.441 72.222 0.00 0.00 0.00 4.61
6754 7598 4.074408 GGATTGGGGGTGGGGTGG 62.074 72.222 0.00 0.00 0.00 4.61
6755 7599 4.074408 GATTGGGGGTGGGGTGGG 62.074 72.222 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.143030 CGTTGCTTCCTGTATCAGTTTCAG 60.143 45.833 0.00 0.00 0.00 3.02
91 92 2.254546 TGTTGATCGTTGCTTCCTGT 57.745 45.000 0.00 0.00 0.00 4.00
93 94 2.002586 CGATGTTGATCGTTGCTTCCT 58.997 47.619 0.00 0.00 45.43 3.36
115 116 3.056393 TCCGTATGTTCGTGGTCAAGATT 60.056 43.478 0.00 0.00 0.00 2.40
116 117 2.494471 TCCGTATGTTCGTGGTCAAGAT 59.506 45.455 0.00 0.00 0.00 2.40
123 124 3.390135 AGCATAATCCGTATGTTCGTGG 58.610 45.455 0.00 0.00 41.60 4.94
137 138 4.778579 ACAGACAAGAGCATGAGCATAAT 58.221 39.130 0.00 0.00 45.49 1.28
156 157 3.550437 ATTGGGCAAGCTAGAGTACAG 57.450 47.619 0.00 0.00 0.00 2.74
243 244 1.365699 CCCCATAACGTCAAACTCCG 58.634 55.000 0.00 0.00 0.00 4.63
301 302 4.619227 CACGCCCAACCGGACAGT 62.619 66.667 9.46 0.00 0.00 3.55
320 321 1.517257 CGAGCGGCTTGAGGTACAG 60.517 63.158 11.99 0.00 0.00 2.74
341 342 1.031571 TGGATCCACAAATGGCGAGC 61.032 55.000 11.44 0.00 46.80 5.03
342 343 0.734889 GTGGATCCACAAATGGCGAG 59.265 55.000 35.21 0.00 46.80 5.03
343 344 2.866872 GTGGATCCACAAATGGCGA 58.133 52.632 35.21 0.00 46.80 5.54
382 383 2.401766 GGATCCAACTGCGCCAGTG 61.402 63.158 6.95 0.00 44.62 3.66
422 423 0.747283 CAGGAATCCACTGCCTCTGC 60.747 60.000 0.61 0.00 38.26 4.26
441 442 5.008118 GCTCCATTATTGAAGTTACTCCAGC 59.992 44.000 0.00 0.00 0.00 4.85
453 454 4.593206 AGGTAATCCGAGCTCCATTATTGA 59.407 41.667 8.47 0.00 39.05 2.57
470 471 1.062428 TCATCGGTCCTGGGAGGTAAT 60.062 52.381 0.00 0.00 36.53 1.89
488 489 0.598562 GTCGTCTGACTGGCTCTTCA 59.401 55.000 6.21 0.00 42.08 3.02
498 499 2.679336 GAGGAGGAGTTAGTCGTCTGAC 59.321 54.545 9.23 0.00 45.86 3.51
533 534 0.611062 TTCGTCGACTGGGACCTCAT 60.611 55.000 14.70 0.00 33.30 2.90
555 556 0.956410 ATCCGAGTCCGATAGCTCCG 60.956 60.000 0.00 0.00 38.22 4.63
562 563 1.739338 GCACCAGATCCGAGTCCGAT 61.739 60.000 0.00 0.00 38.22 4.18
564 565 2.105128 GCACCAGATCCGAGTCCG 59.895 66.667 0.00 0.00 0.00 4.79
613 614 2.060980 CCGCCTCCCAGTAGCTCTT 61.061 63.158 0.00 0.00 0.00 2.85
640 641 4.703379 TTTGCCACCTCATTCCATTTTT 57.297 36.364 0.00 0.00 0.00 1.94
676 677 4.403752 CCTCAAAAGAAAATCCCATCTCCC 59.596 45.833 0.00 0.00 0.00 4.30
677 678 4.403752 CCCTCAAAAGAAAATCCCATCTCC 59.596 45.833 0.00 0.00 0.00 3.71
695 696 2.124085 ACAATCCGGACCCCCTCA 59.876 61.111 6.12 0.00 0.00 3.86
704 706 1.540363 CCGTTCCTATCCACAATCCGG 60.540 57.143 0.00 0.00 0.00 5.14
706 708 3.553828 TTCCGTTCCTATCCACAATCC 57.446 47.619 0.00 0.00 0.00 3.01
745 747 4.345257 ACACATTATCACCTTAGATCGGCT 59.655 41.667 0.00 0.00 0.00 5.52
750 752 6.051717 GCACAGACACATTATCACCTTAGAT 58.948 40.000 0.00 0.00 0.00 1.98
757 759 3.254060 AGACGCACAGACACATTATCAC 58.746 45.455 0.00 0.00 0.00 3.06
761 763 3.592898 ATGAGACGCACAGACACATTA 57.407 42.857 0.00 0.00 0.00 1.90
770 772 2.495669 TGGAGTGAATATGAGACGCACA 59.504 45.455 0.00 0.00 32.16 4.57
847 849 4.310022 TTTATCATCCAACCGGACCTTT 57.690 40.909 9.46 0.00 46.79 3.11
868 870 2.936202 AGGCACACTTCAGTCACAAAT 58.064 42.857 0.00 0.00 0.00 2.32
896 900 0.039180 TCTAGGCAGACTTCCGGTCA 59.961 55.000 0.00 0.00 46.72 4.02
902 906 2.028876 GGACTCCTCTAGGCAGACTTC 58.971 57.143 0.00 0.00 33.25 3.01
915 919 3.135895 CCATAAATACAACCGGGACTCCT 59.864 47.826 6.32 0.00 0.00 3.69
916 920 3.135167 TCCATAAATACAACCGGGACTCC 59.865 47.826 6.32 0.00 0.00 3.85
918 922 4.472108 TCTTCCATAAATACAACCGGGACT 59.528 41.667 6.32 0.00 0.00 3.85
919 923 4.573607 GTCTTCCATAAATACAACCGGGAC 59.426 45.833 6.32 0.00 0.00 4.46
921 925 3.881089 GGTCTTCCATAAATACAACCGGG 59.119 47.826 6.32 0.00 0.00 5.73
967 988 8.126700 TGTTTTCTTCTTTCTACGGAAATGTTC 58.873 33.333 0.00 0.00 40.19 3.18
1072 1094 2.966516 GAGGGGAAGACGAGGTCAATAT 59.033 50.000 0.00 0.00 34.60 1.28
1073 1095 2.385803 GAGGGGAAGACGAGGTCAATA 58.614 52.381 0.00 0.00 34.60 1.90
1109 1131 3.854669 CCAGCGGCGGAATCCTCT 61.855 66.667 9.78 0.00 0.00 3.69
1129 1151 1.152943 TCCATCCCGACTCTCCGAG 60.153 63.158 0.00 0.00 35.52 4.63
1132 1154 2.022240 GCACTCCATCCCGACTCTCC 62.022 65.000 0.00 0.00 0.00 3.71
1195 1217 2.537143 GGAGTTCTGAGGGTTGGAGTA 58.463 52.381 0.00 0.00 0.00 2.59
1264 1286 0.737367 CTCCTTCTCATGCGCAACGA 60.737 55.000 17.11 13.85 0.00 3.85
1401 1426 1.107114 ACGAAATTTGCCACACACCA 58.893 45.000 0.00 0.00 0.00 4.17
1402 1427 2.124122 GAACGAAATTTGCCACACACC 58.876 47.619 0.00 0.00 0.00 4.16
1403 1428 3.078594 AGAACGAAATTTGCCACACAC 57.921 42.857 0.00 0.00 0.00 3.82
1405 1430 4.742438 TCTAGAACGAAATTTGCCACAC 57.258 40.909 0.00 0.00 0.00 3.82
1426 1801 4.712829 TGATCCTTGGCACATTCATCAATT 59.287 37.500 0.00 0.00 39.30 2.32
1539 1948 5.011533 GCATCTCTATCAGTGTAACCCTCAT 59.988 44.000 0.00 0.00 37.80 2.90
1667 2097 1.312815 AGGAACTGCAAACTCTGTGC 58.687 50.000 0.00 0.00 42.55 4.57
1694 2124 0.877649 CTGTGTGAACGAGCACTGCT 60.878 55.000 2.22 2.22 43.88 4.24
1813 2243 2.952310 CCCTGCTAACAATTAAGAGGCC 59.048 50.000 0.00 0.00 0.00 5.19
2220 2750 1.906574 ACCTCCTGCGGTCTCAAATTA 59.093 47.619 0.00 0.00 29.14 1.40
2221 2751 0.693049 ACCTCCTGCGGTCTCAAATT 59.307 50.000 0.00 0.00 29.14 1.82
2222 2752 0.693049 AACCTCCTGCGGTCTCAAAT 59.307 50.000 0.00 0.00 35.89 2.32
2223 2753 1.001633 GTAACCTCCTGCGGTCTCAAA 59.998 52.381 0.00 0.00 35.89 2.69
5870 6712 6.805150 TCATAGTACCTGACCATCCATAGAT 58.195 40.000 0.00 0.00 0.00 1.98
5905 6747 2.224233 ACAGAGCATCCATTCCTCATCG 60.224 50.000 0.00 0.00 33.66 3.84
5906 6748 3.139850 CACAGAGCATCCATTCCTCATC 58.860 50.000 0.00 0.00 33.66 2.92
5907 6749 2.748798 GCACAGAGCATCCATTCCTCAT 60.749 50.000 0.00 0.00 44.79 2.90
5950 6792 4.653801 AGGTTTATATGTTCAATTGGGGCC 59.346 41.667 5.42 0.00 0.00 5.80
5951 6793 5.869649 AGGTTTATATGTTCAATTGGGGC 57.130 39.130 5.42 0.00 0.00 5.80
5952 6794 6.048509 GCAAGGTTTATATGTTCAATTGGGG 58.951 40.000 5.42 0.00 0.00 4.96
5953 6795 6.877236 AGCAAGGTTTATATGTTCAATTGGG 58.123 36.000 5.42 0.00 0.00 4.12
5954 6796 7.920682 GGTAGCAAGGTTTATATGTTCAATTGG 59.079 37.037 5.42 0.00 0.00 3.16
6040 6882 0.592247 GCCATAACAAATCGCCAGCG 60.592 55.000 5.50 5.50 41.35 5.18
6041 6883 0.592247 CGCCATAACAAATCGCCAGC 60.592 55.000 0.00 0.00 0.00 4.85
6042 6884 0.592247 GCGCCATAACAAATCGCCAG 60.592 55.000 0.00 0.00 39.91 4.85
6056 6898 1.578926 CGGATTTTTGACAGCGCCA 59.421 52.632 2.29 0.00 0.00 5.69
6061 6903 1.154035 GCGGCCGGATTTTTGACAG 60.154 57.895 29.38 0.00 0.00 3.51
6174 7016 5.411361 TCCAGTCAATATTTTTCTCACCGTG 59.589 40.000 0.00 0.00 0.00 4.94
6188 7032 1.067060 CCACGATCGCTCCAGTCAATA 59.933 52.381 16.60 0.00 0.00 1.90
6241 7085 0.392998 GTGCACGAATCCATCCACCT 60.393 55.000 0.00 0.00 0.00 4.00
6310 7154 0.605083 GGGCCTGCAAGAAAAGAAGG 59.395 55.000 0.84 0.00 34.07 3.46
6321 7165 1.980232 CTGCAAATCTGGGCCTGCA 60.980 57.895 15.56 15.56 42.28 4.41
6358 7202 1.891150 TCGTCTCCTCAGTAACCCAAC 59.109 52.381 0.00 0.00 0.00 3.77
6491 7335 3.901797 AAAGGCGAGCGAACAGGGG 62.902 63.158 0.00 0.00 0.00 4.79
6492 7336 2.358737 AAAGGCGAGCGAACAGGG 60.359 61.111 0.00 0.00 0.00 4.45
6493 7337 1.021390 ATCAAAGGCGAGCGAACAGG 61.021 55.000 0.00 0.00 0.00 4.00
6494 7338 0.371645 GATCAAAGGCGAGCGAACAG 59.628 55.000 0.00 0.00 0.00 3.16
6495 7339 0.320334 TGATCAAAGGCGAGCGAACA 60.320 50.000 0.00 0.00 0.00 3.18
6496 7340 1.009829 ATGATCAAAGGCGAGCGAAC 58.990 50.000 0.00 0.00 0.00 3.95
6497 7341 2.595124 TATGATCAAAGGCGAGCGAA 57.405 45.000 0.00 0.00 0.00 4.70
6498 7342 2.820059 ATATGATCAAAGGCGAGCGA 57.180 45.000 0.00 0.00 0.00 4.93
6499 7343 2.668457 GGTATATGATCAAAGGCGAGCG 59.332 50.000 0.00 0.00 0.00 5.03
6500 7344 3.003480 GGGTATATGATCAAAGGCGAGC 58.997 50.000 0.00 0.00 0.00 5.03
6501 7345 3.261897 AGGGGTATATGATCAAAGGCGAG 59.738 47.826 0.00 0.00 0.00 5.03
6502 7346 3.248024 AGGGGTATATGATCAAAGGCGA 58.752 45.455 0.00 0.00 0.00 5.54
6503 7347 3.703001 AGGGGTATATGATCAAAGGCG 57.297 47.619 0.00 0.00 0.00 5.52
6504 7348 5.635120 AGAAAGGGGTATATGATCAAAGGC 58.365 41.667 0.00 0.00 0.00 4.35
6505 7349 7.470563 GCAAAGAAAGGGGTATATGATCAAAGG 60.471 40.741 0.00 0.00 0.00 3.11
6506 7350 7.286316 AGCAAAGAAAGGGGTATATGATCAAAG 59.714 37.037 0.00 0.00 0.00 2.77
6507 7351 7.125391 AGCAAAGAAAGGGGTATATGATCAAA 58.875 34.615 0.00 0.00 0.00 2.69
6508 7352 6.672593 AGCAAAGAAAGGGGTATATGATCAA 58.327 36.000 0.00 0.00 0.00 2.57
6509 7353 6.266131 AGCAAAGAAAGGGGTATATGATCA 57.734 37.500 0.00 0.00 0.00 2.92
6510 7354 6.515696 GCAAGCAAAGAAAGGGGTATATGATC 60.516 42.308 0.00 0.00 0.00 2.92
6511 7355 5.302823 GCAAGCAAAGAAAGGGGTATATGAT 59.697 40.000 0.00 0.00 0.00 2.45
6512 7356 4.644685 GCAAGCAAAGAAAGGGGTATATGA 59.355 41.667 0.00 0.00 0.00 2.15
6513 7357 4.202151 GGCAAGCAAAGAAAGGGGTATATG 60.202 45.833 0.00 0.00 0.00 1.78
6514 7358 3.960755 GGCAAGCAAAGAAAGGGGTATAT 59.039 43.478 0.00 0.00 0.00 0.86
6515 7359 3.011257 AGGCAAGCAAAGAAAGGGGTATA 59.989 43.478 0.00 0.00 0.00 1.47
6516 7360 2.179427 GGCAAGCAAAGAAAGGGGTAT 58.821 47.619 0.00 0.00 0.00 2.73
6517 7361 1.146982 AGGCAAGCAAAGAAAGGGGTA 59.853 47.619 0.00 0.00 0.00 3.69
6518 7362 0.105504 AGGCAAGCAAAGAAAGGGGT 60.106 50.000 0.00 0.00 0.00 4.95
6519 7363 0.319405 CAGGCAAGCAAAGAAAGGGG 59.681 55.000 0.00 0.00 0.00 4.79
6520 7364 0.320160 GCAGGCAAGCAAAGAAAGGG 60.320 55.000 0.00 0.00 0.00 3.95
6521 7365 0.320160 GGCAGGCAAGCAAAGAAAGG 60.320 55.000 4.37 0.00 35.83 3.11
6522 7366 0.677842 AGGCAGGCAAGCAAAGAAAG 59.322 50.000 0.00 0.00 35.83 2.62
6523 7367 0.675633 GAGGCAGGCAAGCAAAGAAA 59.324 50.000 0.00 0.00 35.83 2.52
6524 7368 0.178981 AGAGGCAGGCAAGCAAAGAA 60.179 50.000 0.00 0.00 35.83 2.52
6525 7369 0.892358 CAGAGGCAGGCAAGCAAAGA 60.892 55.000 0.00 0.00 35.83 2.52
6526 7370 0.892358 TCAGAGGCAGGCAAGCAAAG 60.892 55.000 0.00 0.00 35.83 2.77
6527 7371 0.467844 TTCAGAGGCAGGCAAGCAAA 60.468 50.000 0.00 0.00 35.83 3.68
6528 7372 1.151221 TTCAGAGGCAGGCAAGCAA 59.849 52.632 0.00 0.00 35.83 3.91
6529 7373 1.601759 GTTCAGAGGCAGGCAAGCA 60.602 57.895 0.00 0.00 35.83 3.91
6530 7374 2.338785 GGTTCAGAGGCAGGCAAGC 61.339 63.158 0.00 0.00 0.00 4.01
6531 7375 1.676967 GGGTTCAGAGGCAGGCAAG 60.677 63.158 0.00 0.00 0.00 4.01
6532 7376 2.436109 GGGTTCAGAGGCAGGCAA 59.564 61.111 0.00 0.00 0.00 4.52
6533 7377 3.650950 GGGGTTCAGAGGCAGGCA 61.651 66.667 0.00 0.00 0.00 4.75
6534 7378 4.432741 GGGGGTTCAGAGGCAGGC 62.433 72.222 0.00 0.00 0.00 4.85
6535 7379 2.612115 AGGGGGTTCAGAGGCAGG 60.612 66.667 0.00 0.00 0.00 4.85
6536 7380 1.492133 TTGAGGGGGTTCAGAGGCAG 61.492 60.000 0.00 0.00 0.00 4.85
6537 7381 0.846427 ATTGAGGGGGTTCAGAGGCA 60.846 55.000 0.00 0.00 0.00 4.75
6538 7382 0.332972 AATTGAGGGGGTTCAGAGGC 59.667 55.000 0.00 0.00 0.00 4.70
6539 7383 1.918957 AGAATTGAGGGGGTTCAGAGG 59.081 52.381 0.00 0.00 0.00 3.69
6540 7384 2.307098 ACAGAATTGAGGGGGTTCAGAG 59.693 50.000 0.00 0.00 0.00 3.35
6541 7385 2.305927 GACAGAATTGAGGGGGTTCAGA 59.694 50.000 0.00 0.00 0.00 3.27
6542 7386 2.307098 AGACAGAATTGAGGGGGTTCAG 59.693 50.000 0.00 0.00 0.00 3.02
6543 7387 2.348472 AGACAGAATTGAGGGGGTTCA 58.652 47.619 0.00 0.00 0.00 3.18
6544 7388 3.519913 AGTAGACAGAATTGAGGGGGTTC 59.480 47.826 0.00 0.00 0.00 3.62
6545 7389 3.532102 AGTAGACAGAATTGAGGGGGTT 58.468 45.455 0.00 0.00 0.00 4.11
6546 7390 3.207044 AGTAGACAGAATTGAGGGGGT 57.793 47.619 0.00 0.00 0.00 4.95
6547 7391 3.777522 AGAAGTAGACAGAATTGAGGGGG 59.222 47.826 0.00 0.00 0.00 5.40
6548 7392 5.181748 CAAGAAGTAGACAGAATTGAGGGG 58.818 45.833 0.00 0.00 0.00 4.79
6549 7393 4.633565 GCAAGAAGTAGACAGAATTGAGGG 59.366 45.833 0.00 0.00 0.00 4.30
6550 7394 5.350914 CAGCAAGAAGTAGACAGAATTGAGG 59.649 44.000 0.00 0.00 0.00 3.86
6551 7395 6.162079 TCAGCAAGAAGTAGACAGAATTGAG 58.838 40.000 0.00 0.00 0.00 3.02
6552 7396 6.101650 TCAGCAAGAAGTAGACAGAATTGA 57.898 37.500 0.00 0.00 0.00 2.57
6553 7397 6.981762 ATCAGCAAGAAGTAGACAGAATTG 57.018 37.500 0.00 0.00 0.00 2.32
6554 7398 6.128063 GCAATCAGCAAGAAGTAGACAGAATT 60.128 38.462 0.00 0.00 44.79 2.17
6555 7399 5.353678 GCAATCAGCAAGAAGTAGACAGAAT 59.646 40.000 0.00 0.00 44.79 2.40
6556 7400 4.692625 GCAATCAGCAAGAAGTAGACAGAA 59.307 41.667 0.00 0.00 44.79 3.02
6557 7401 4.248859 GCAATCAGCAAGAAGTAGACAGA 58.751 43.478 0.00 0.00 44.79 3.41
6558 7402 4.596801 GCAATCAGCAAGAAGTAGACAG 57.403 45.455 0.00 0.00 44.79 3.51
6571 7415 3.302129 CCAAAGGGGGCAATCAGC 58.698 61.111 0.00 0.00 44.65 4.26
6579 7423 1.974236 TGTTAAACATGCCAAAGGGGG 59.026 47.619 0.00 0.00 37.04 5.40
6580 7424 3.760580 TTGTTAAACATGCCAAAGGGG 57.239 42.857 0.00 0.00 40.85 4.79
6581 7425 6.039159 ACAAATTTGTTAAACATGCCAAAGGG 59.961 34.615 18.13 0.00 38.47 3.95
6582 7426 7.025485 ACAAATTTGTTAAACATGCCAAAGG 57.975 32.000 18.13 0.00 38.47 3.11
6583 7427 7.692088 TGACAAATTTGTTAAACATGCCAAAG 58.308 30.769 24.02 0.00 42.43 2.77
6584 7428 7.335422 ACTGACAAATTTGTTAAACATGCCAAA 59.665 29.630 24.02 0.00 42.43 3.28
6585 7429 6.820656 ACTGACAAATTTGTTAAACATGCCAA 59.179 30.769 24.02 0.65 42.43 4.52
6586 7430 6.344500 ACTGACAAATTTGTTAAACATGCCA 58.656 32.000 24.02 12.97 42.43 4.92
6587 7431 6.843069 ACTGACAAATTTGTTAAACATGCC 57.157 33.333 24.02 9.21 42.43 4.40
6597 7441 9.125026 GGGAGATTGATATACTGACAAATTTGT 57.875 33.333 23.49 23.49 45.65 2.83
6598 7442 9.347240 AGGGAGATTGATATACTGACAAATTTG 57.653 33.333 16.67 16.67 0.00 2.32
6599 7443 9.566432 GAGGGAGATTGATATACTGACAAATTT 57.434 33.333 0.00 0.00 0.00 1.82
6600 7444 8.717717 TGAGGGAGATTGATATACTGACAAATT 58.282 33.333 0.00 0.00 0.00 1.82
6601 7445 8.267620 TGAGGGAGATTGATATACTGACAAAT 57.732 34.615 0.00 0.00 0.00 2.32
6602 7446 7.675161 TGAGGGAGATTGATATACTGACAAA 57.325 36.000 0.00 0.00 0.00 2.83
6603 7447 6.239430 GCTGAGGGAGATTGATATACTGACAA 60.239 42.308 0.00 0.00 0.00 3.18
6604 7448 5.244851 GCTGAGGGAGATTGATATACTGACA 59.755 44.000 0.00 0.00 0.00 3.58
6605 7449 5.244851 TGCTGAGGGAGATTGATATACTGAC 59.755 44.000 0.00 0.00 0.00 3.51
6606 7450 5.244851 GTGCTGAGGGAGATTGATATACTGA 59.755 44.000 0.00 0.00 0.00 3.41
6607 7451 5.477510 GTGCTGAGGGAGATTGATATACTG 58.522 45.833 0.00 0.00 0.00 2.74
6608 7452 4.530161 GGTGCTGAGGGAGATTGATATACT 59.470 45.833 0.00 0.00 0.00 2.12
6609 7453 4.530161 AGGTGCTGAGGGAGATTGATATAC 59.470 45.833 0.00 0.00 0.00 1.47
6610 7454 4.756564 AGGTGCTGAGGGAGATTGATATA 58.243 43.478 0.00 0.00 0.00 0.86
6611 7455 3.596101 AGGTGCTGAGGGAGATTGATAT 58.404 45.455 0.00 0.00 0.00 1.63
6612 7456 3.051940 AGGTGCTGAGGGAGATTGATA 57.948 47.619 0.00 0.00 0.00 2.15
6613 7457 1.890552 AGGTGCTGAGGGAGATTGAT 58.109 50.000 0.00 0.00 0.00 2.57
6614 7458 2.392662 CTAGGTGCTGAGGGAGATTGA 58.607 52.381 0.00 0.00 0.00 2.57
6615 7459 1.415659 CCTAGGTGCTGAGGGAGATTG 59.584 57.143 0.00 0.00 0.00 2.67
6616 7460 1.799933 CCTAGGTGCTGAGGGAGATT 58.200 55.000 0.00 0.00 0.00 2.40
6617 7461 3.548793 CCTAGGTGCTGAGGGAGAT 57.451 57.895 0.00 0.00 0.00 2.75
6622 7466 1.280457 AGAAACCCTAGGTGCTGAGG 58.720 55.000 8.29 0.00 35.34 3.86
6623 7467 2.832129 TGTAGAAACCCTAGGTGCTGAG 59.168 50.000 8.29 0.00 35.34 3.35
6624 7468 2.897350 TGTAGAAACCCTAGGTGCTGA 58.103 47.619 8.29 0.00 35.34 4.26
6625 7469 3.695830 TTGTAGAAACCCTAGGTGCTG 57.304 47.619 8.29 0.00 35.34 4.41
6626 7470 4.929146 AATTGTAGAAACCCTAGGTGCT 57.071 40.909 8.29 0.00 35.34 4.40
6627 7471 6.315642 GTCTAAATTGTAGAAACCCTAGGTGC 59.684 42.308 8.29 0.00 35.34 5.01
6628 7472 7.391620 TGTCTAAATTGTAGAAACCCTAGGTG 58.608 38.462 8.29 1.63 35.34 4.00
6629 7473 7.563724 TGTCTAAATTGTAGAAACCCTAGGT 57.436 36.000 8.29 0.00 37.65 3.08
6630 7474 9.110502 GATTGTCTAAATTGTAGAAACCCTAGG 57.889 37.037 0.06 0.06 0.00 3.02
6631 7475 8.818057 CGATTGTCTAAATTGTAGAAACCCTAG 58.182 37.037 0.00 0.00 0.00 3.02
6632 7476 8.316214 ACGATTGTCTAAATTGTAGAAACCCTA 58.684 33.333 0.00 0.00 0.00 3.53
6633 7477 7.166167 ACGATTGTCTAAATTGTAGAAACCCT 58.834 34.615 0.00 0.00 0.00 4.34
6634 7478 7.373778 ACGATTGTCTAAATTGTAGAAACCC 57.626 36.000 0.00 0.00 0.00 4.11
6635 7479 8.385858 GGTACGATTGTCTAAATTGTAGAAACC 58.614 37.037 0.00 0.00 29.67 3.27
6636 7480 8.928733 TGGTACGATTGTCTAAATTGTAGAAAC 58.071 33.333 0.00 0.00 29.67 2.78
6637 7481 8.928733 GTGGTACGATTGTCTAAATTGTAGAAA 58.071 33.333 0.00 0.00 29.67 2.52
6638 7482 8.089597 TGTGGTACGATTGTCTAAATTGTAGAA 58.910 33.333 0.00 0.00 29.67 2.10
6639 7483 7.604549 TGTGGTACGATTGTCTAAATTGTAGA 58.395 34.615 0.00 0.00 29.67 2.59
6640 7484 7.010183 CCTGTGGTACGATTGTCTAAATTGTAG 59.990 40.741 0.00 0.00 29.67 2.74
6641 7485 6.814644 CCTGTGGTACGATTGTCTAAATTGTA 59.185 38.462 0.00 0.00 0.00 2.41
6642 7486 5.642063 CCTGTGGTACGATTGTCTAAATTGT 59.358 40.000 0.00 0.00 0.00 2.71
6643 7487 5.872617 TCCTGTGGTACGATTGTCTAAATTG 59.127 40.000 0.00 0.00 0.00 2.32
6644 7488 5.873164 GTCCTGTGGTACGATTGTCTAAATT 59.127 40.000 0.00 0.00 0.00 1.82
6645 7489 5.416947 GTCCTGTGGTACGATTGTCTAAAT 58.583 41.667 0.00 0.00 0.00 1.40
6646 7490 4.322198 GGTCCTGTGGTACGATTGTCTAAA 60.322 45.833 0.00 0.00 0.00 1.85
6647 7491 3.194116 GGTCCTGTGGTACGATTGTCTAA 59.806 47.826 0.00 0.00 0.00 2.10
6648 7492 2.756760 GGTCCTGTGGTACGATTGTCTA 59.243 50.000 0.00 0.00 0.00 2.59
6649 7493 1.549170 GGTCCTGTGGTACGATTGTCT 59.451 52.381 0.00 0.00 0.00 3.41
6650 7494 1.274167 TGGTCCTGTGGTACGATTGTC 59.726 52.381 0.00 0.00 0.00 3.18
6651 7495 1.001633 GTGGTCCTGTGGTACGATTGT 59.998 52.381 0.00 0.00 0.00 2.71
6652 7496 1.001520 TGTGGTCCTGTGGTACGATTG 59.998 52.381 0.00 0.00 0.00 2.67
6653 7497 1.001633 GTGTGGTCCTGTGGTACGATT 59.998 52.381 0.00 0.00 0.00 3.34
6654 7498 0.606604 GTGTGGTCCTGTGGTACGAT 59.393 55.000 0.00 0.00 0.00 3.73
6655 7499 0.756070 TGTGTGGTCCTGTGGTACGA 60.756 55.000 0.00 0.00 0.00 3.43
6656 7500 0.105224 TTGTGTGGTCCTGTGGTACG 59.895 55.000 0.00 0.00 0.00 3.67
6657 7501 2.218603 CTTTGTGTGGTCCTGTGGTAC 58.781 52.381 0.00 0.00 0.00 3.34
6658 7502 1.841277 ACTTTGTGTGGTCCTGTGGTA 59.159 47.619 0.00 0.00 0.00 3.25
6659 7503 0.623723 ACTTTGTGTGGTCCTGTGGT 59.376 50.000 0.00 0.00 0.00 4.16
6660 7504 1.308998 GACTTTGTGTGGTCCTGTGG 58.691 55.000 0.00 0.00 0.00 4.17
6661 7505 1.308998 GGACTTTGTGTGGTCCTGTG 58.691 55.000 5.04 0.00 45.99 3.66
6662 7506 3.800826 GGACTTTGTGTGGTCCTGT 57.199 52.632 5.04 0.00 45.99 4.00
6666 7510 0.179067 TCCGTGGACTTTGTGTGGTC 60.179 55.000 0.00 0.00 0.00 4.02
6667 7511 0.253610 TTCCGTGGACTTTGTGTGGT 59.746 50.000 0.00 0.00 0.00 4.16
6668 7512 1.384525 TTTCCGTGGACTTTGTGTGG 58.615 50.000 0.00 0.00 0.00 4.17
6669 7513 2.789779 CGTTTTCCGTGGACTTTGTGTG 60.790 50.000 0.00 0.00 0.00 3.82
6670 7514 1.399089 CGTTTTCCGTGGACTTTGTGT 59.601 47.619 0.00 0.00 0.00 3.72
6671 7515 1.268335 CCGTTTTCCGTGGACTTTGTG 60.268 52.381 0.00 0.00 33.66 3.33
6672 7516 1.018910 CCGTTTTCCGTGGACTTTGT 58.981 50.000 0.00 0.00 33.66 2.83
6673 7517 1.301423 TCCGTTTTCCGTGGACTTTG 58.699 50.000 0.00 0.00 33.66 2.77
6674 7518 1.944709 CTTCCGTTTTCCGTGGACTTT 59.055 47.619 0.00 0.00 33.66 2.66
6675 7519 1.589803 CTTCCGTTTTCCGTGGACTT 58.410 50.000 0.00 0.00 33.66 3.01
6676 7520 0.250166 CCTTCCGTTTTCCGTGGACT 60.250 55.000 0.00 0.00 33.66 3.85
6677 7521 1.232621 CCCTTCCGTTTTCCGTGGAC 61.233 60.000 0.00 0.00 33.66 4.02
6678 7522 1.071814 CCCTTCCGTTTTCCGTGGA 59.928 57.895 0.00 0.00 33.66 4.02
6679 7523 1.969589 CCCCTTCCGTTTTCCGTGG 60.970 63.158 0.00 0.00 33.66 4.94
6680 7524 1.969589 CCCCCTTCCGTTTTCCGTG 60.970 63.158 0.00 0.00 33.66 4.94
6681 7525 1.707993 TTCCCCCTTCCGTTTTCCGT 61.708 55.000 0.00 0.00 33.66 4.69
6682 7526 0.537828 TTTCCCCCTTCCGTTTTCCG 60.538 55.000 0.00 0.00 0.00 4.30
6683 7527 1.254026 CTTTCCCCCTTCCGTTTTCC 58.746 55.000 0.00 0.00 0.00 3.13
6684 7528 0.601558 GCTTTCCCCCTTCCGTTTTC 59.398 55.000 0.00 0.00 0.00 2.29
6685 7529 0.187606 AGCTTTCCCCCTTCCGTTTT 59.812 50.000 0.00 0.00 0.00 2.43
6686 7530 0.187606 AAGCTTTCCCCCTTCCGTTT 59.812 50.000 0.00 0.00 0.00 3.60
6687 7531 0.539669 CAAGCTTTCCCCCTTCCGTT 60.540 55.000 0.00 0.00 0.00 4.44
6688 7532 1.074951 CAAGCTTTCCCCCTTCCGT 59.925 57.895 0.00 0.00 0.00 4.69
6689 7533 2.343426 GCAAGCTTTCCCCCTTCCG 61.343 63.158 0.00 0.00 0.00 4.30
6690 7534 1.984570 GGCAAGCTTTCCCCCTTCC 60.985 63.158 3.39 0.00 0.00 3.46
6691 7535 0.542938 AAGGCAAGCTTTCCCCCTTC 60.543 55.000 11.85 0.00 30.38 3.46
6692 7536 0.783850 TAAGGCAAGCTTTCCCCCTT 59.216 50.000 11.85 15.01 39.16 3.95
6693 7537 0.039764 GTAAGGCAAGCTTTCCCCCT 59.960 55.000 11.85 5.30 0.00 4.79
6694 7538 0.970937 GGTAAGGCAAGCTTTCCCCC 60.971 60.000 11.85 5.97 0.00 5.40
6695 7539 0.039764 AGGTAAGGCAAGCTTTCCCC 59.960 55.000 11.85 6.18 0.00 4.81
6696 7540 1.546029 CAAGGTAAGGCAAGCTTTCCC 59.454 52.381 11.85 8.12 35.08 3.97
6697 7541 1.546029 CCAAGGTAAGGCAAGCTTTCC 59.454 52.381 7.09 7.09 35.08 3.13
6698 7542 1.546029 CCCAAGGTAAGGCAAGCTTTC 59.454 52.381 0.00 0.00 35.08 2.62
6699 7543 1.632589 CCCAAGGTAAGGCAAGCTTT 58.367 50.000 0.00 0.00 35.08 3.51
6700 7544 0.251787 CCCCAAGGTAAGGCAAGCTT 60.252 55.000 0.00 0.00 37.68 3.74
6701 7545 1.384191 CCCCAAGGTAAGGCAAGCT 59.616 57.895 0.00 0.00 0.00 3.74
6702 7546 2.351244 GCCCCAAGGTAAGGCAAGC 61.351 63.158 0.00 0.00 46.34 4.01
6703 7547 4.018409 GCCCCAAGGTAAGGCAAG 57.982 61.111 0.00 0.00 46.34 4.01
6707 7551 0.324645 ATTGCTGCCCCAAGGTAAGG 60.325 55.000 0.00 0.00 34.57 2.69
6708 7552 0.819582 CATTGCTGCCCCAAGGTAAG 59.180 55.000 0.00 0.00 34.57 2.34
6709 7553 0.614415 CCATTGCTGCCCCAAGGTAA 60.614 55.000 0.00 0.00 34.57 2.85
6710 7554 1.000233 CCATTGCTGCCCCAAGGTA 60.000 57.895 0.00 0.00 34.57 3.08
6711 7555 2.284112 CCATTGCTGCCCCAAGGT 60.284 61.111 0.00 0.00 34.57 3.50
6712 7556 2.037687 TCCATTGCTGCCCCAAGG 59.962 61.111 0.00 0.00 0.00 3.61
6713 7557 2.056223 CCTCCATTGCTGCCCCAAG 61.056 63.158 0.00 0.00 0.00 3.61
6714 7558 2.037687 CCTCCATTGCTGCCCCAA 59.962 61.111 0.00 0.00 0.00 4.12
6715 7559 4.064768 CCCTCCATTGCTGCCCCA 62.065 66.667 0.00 0.00 0.00 4.96
6723 7567 4.569180 ATCCGCCGCCCTCCATTG 62.569 66.667 0.00 0.00 0.00 2.82
6724 7568 3.809013 AATCCGCCGCCCTCCATT 61.809 61.111 0.00 0.00 0.00 3.16
6725 7569 4.569180 CAATCCGCCGCCCTCCAT 62.569 66.667 0.00 0.00 0.00 3.41
6736 7580 4.440829 CACCCCACCCCCAATCCG 62.441 72.222 0.00 0.00 0.00 4.18
6737 7581 4.074408 CCACCCCACCCCCAATCC 62.074 72.222 0.00 0.00 0.00 3.01
6738 7582 4.074408 CCCACCCCACCCCCAATC 62.074 72.222 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.