AutoCloner

Multiple sequence alignment - TraesCS1D01G378900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G378900	chr1D	100.000	2848	0	0	653	3500	454812259	454815106	0.000000e+00	5260.0
1	TraesCS1D01G378900	chr1D	87.052	1506	118	37	853	2338	454768817	454770265	0.000000e+00	1629.0
2	TraesCS1D01G378900	chr1D	87.127	1507	97	42	855	2338	454458700	454457268	0.000000e+00	1618.0
3	TraesCS1D01G378900	chr1D	87.500	1368	95	32	989	2338	454493944	454492635	0.000000e+00	1509.0
4	TraesCS1D01G378900	chr1D	100.000	482	0	0	1	482	454811607	454812088	0.000000e+00	891.0
5	TraesCS1D01G378900	chr1D	81.081	111	15	5	3160	3265	107183084	107182975	2.240000e-12	84.2
6	TraesCS1D01G378900	chr1D	76.875	160	15	10	1	144	454459213	454459060	1.740000e-08	71.3
7	TraesCS1D01G378900	chr1A	93.768	2840	118	19	680	3500	548788871	548791670	0.000000e+00	4209.0
8	TraesCS1D01G378900	chr1A	90.320	1188	97	7	1157	2338	548733368	548734543	0.000000e+00	1541.0
9	TraesCS1D01G378900	chr1A	89.595	1211	92	15	1134	2338	548772394	548773576	0.000000e+00	1507.0
10	TraesCS1D01G378900	chr1A	91.489	470	34	4	1	467	548788079	548788545	2.950000e-180	641.0
11	TraesCS1D01G378900	chr1A	81.188	202	34	4	164	363	151357978	151357779	3.620000e-35	159.0
12	TraesCS1D01G378900	chr1A	80.412	194	23	7	3141	3320	64410255	64410447	2.190000e-27	134.0
13	TraesCS1D01G378900	chr1A	83.486	109	9	8	730	829	548732847	548732955	3.720000e-15	93.5
14	TraesCS1D01G378900	chr1B	93.284	2412	103	23	732	3127	625144817	625147185	0.000000e+00	3502.0
15	TraesCS1D01G378900	chr1B	87.732	1508	106	37	853	2338	625082314	625083764	0.000000e+00	1687.0
16	TraesCS1D01G378900	chr1B	88.102	1370	100	30	975	2334	624970683	624971999	0.000000e+00	1568.0
17	TraesCS1D01G378900	chr1B	84.279	229	28	3	2115	2338	625051984	625052209	2.120000e-52	217.0
18	TraesCS1D01G378900	chr1B	86.792	159	16	4	1	155	625143441	625143598	4.640000e-39	172.0
19	TraesCS1D01G378900	chr1B	79.891	184	23	10	3149	3319	580213557	580213739	4.740000e-24	122.0
20	TraesCS1D01G378900	chr3A	85.990	207	25	4	159	363	489755862	489755658	5.880000e-53	219.0
21	TraesCS1D01G378900	chr3A	82.828	99	14	3	3163	3259	94185722	94185819	6.220000e-13	86.1
22	TraesCS1D01G378900	chr2B	85.990	207	25	4	159	363	33847619	33847415	5.880000e-53	219.0
23	TraesCS1D01G378900	chr3D	84.158	202	29	2	163	362	556891702	556891502	3.570000e-45	193.0
24	TraesCS1D01G378900	chr5D	81.043	211	34	5	157	363	62150846	62150638	2.800000e-36	163.0
25	TraesCS1D01G378900	chr5D	77.011	174	33	7	192	362	464876115	464876284	3.720000e-15	93.5
26	TraesCS1D01G378900	chr7D	80.874	183	33	1	159	339	116789399	116789581	3.640000e-30	143.0
27	TraesCS1D01G378900	chr7D	82.906	117	17	3	3141	3255	462277991	462277876	6.180000e-18	102.0
28	TraesCS1D01G378900	chr4D	80.874	183	33	2	159	339	35687147	35687329	3.640000e-30	143.0
29	TraesCS1D01G378900	chr4B	77.465	213	30	17	3159	3366	659694128	659693929	1.030000e-20	111.0
30	TraesCS1D01G378900	chr7A	80.159	126	20	5	3168	3290	330246281	330246158	4.810000e-14	89.8
31	TraesCS1D01G378900	chr6B	78.906	128	18	9	3168	3290	369014281	369014158	1.040000e-10	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G378900	chr1D	454811607	454815106	3499	False	3075.50	5260	100.0000	1	3500	2	chr1D.!!$F2	3499
1	TraesCS1D01G378900	chr1D	454768817	454770265	1448	False	1629.00	1629	87.0520	853	2338	1	chr1D.!!$F1	1485
2	TraesCS1D01G378900	chr1D	454492635	454493944	1309	True	1509.00	1509	87.5000	989	2338	1	chr1D.!!$R2	1349
3	TraesCS1D01G378900	chr1D	454457268	454459213	1945	True	844.65	1618	82.0010	1	2338	2	chr1D.!!$R3	2337
4	TraesCS1D01G378900	chr1A	548788079	548791670	3591	False	2425.00	4209	92.6285	1	3500	2	chr1A.!!$F4	3499
5	TraesCS1D01G378900	chr1A	548772394	548773576	1182	False	1507.00	1507	89.5950	1134	2338	1	chr1A.!!$F2	1204
6	TraesCS1D01G378900	chr1A	548732847	548734543	1696	False	817.25	1541	86.9030	730	2338	2	chr1A.!!$F3	1608
7	TraesCS1D01G378900	chr1B	625143441	625147185	3744	False	1837.00	3502	90.0380	1	3127	2	chr1B.!!$F5	3126
8	TraesCS1D01G378900	chr1B	625082314	625083764	1450	False	1687.00	1687	87.7320	853	2338	1	chr1B.!!$F4	1485
9	TraesCS1D01G378900	chr1B	624970683	624971999	1316	False	1568.00	1568	88.1020	975	2334	1	chr1B.!!$F2	1359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
331	444	0.248215	GCGCATCACCGGAAATTCAG	60.248	55.0	9.46	0.00	0.00	3.02	F
367	480	0.401738	AAAGGCAAGCACCAGAGCTA	59.598	50.0	0.00	0.00	45.89	3.32	F
1659	2941	0.387622	TACAAGCGCGCTTACTTCGT	60.388	50.0	42.41	34.72	34.50	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1149	2431	0.034059	GCTGTCCATCCGAATCCGAT	59.966	55.0	0.0	38.22	4.18	R
2313	3643	0.803768	CAGCGCGAAGTCTATGCACT	60.804	55.0	12.1	0.00	4.40	R
3206	4548	0.322975	TCTGCTCTGACTTTCTGGGC	59.677	55.0	0.0	41.51	5.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
80	84	6.343703	TGAGTTCATCATCATCTTCATCGTT	58.656	36.000	0.00	0.00	31.12	3.85
93	97	5.171476	TCTTCATCGTTGTCTTCCATCTTC	58.829	41.667	0.00	0.00	0.00	2.87
97	101	5.639506	TCATCGTTGTCTTCCATCTTCTTTC	59.360	40.000	0.00	0.00	0.00	2.62
147	158	2.203280	TTGACCCACACCAAGGCG	60.203	61.111	0.00	0.00	0.00	5.52
182	193	2.596904	ATACACGCATACACTCACCC	57.403	50.000	0.00	0.00	0.00	4.61
207	220	2.180159	ATCGCACACACCCACCCTAC	62.180	60.000	0.00	0.00	0.00	3.18
286	399	2.466982	CGTAGGCGGCTCGTAGTCA	61.467	63.158	17.67	0.00	0.00	3.41
308	421	3.516578	GGAACGTCTCTTCCCACTG	57.483	57.895	0.00	0.00	34.59	3.66
323	436	3.853330	CTGAACGCGCATCACCGG	61.853	66.667	5.73	0.00	0.00	5.28
328	441	1.582610	AACGCGCATCACCGGAAATT	61.583	50.000	9.46	0.00	0.00	1.82
331	444	0.248215	GCGCATCACCGGAAATTCAG	60.248	55.000	9.46	0.00	0.00	3.02
367	480	0.401738	AAAGGCAAGCACCAGAGCTA	59.598	50.000	0.00	0.00	45.89	3.32
372	485	1.407989	GCAAGCACCAGAGCTAAGGAT	60.408	52.381	10.70	0.00	45.89	3.24
373	486	2.158900	GCAAGCACCAGAGCTAAGGATA	60.159	50.000	10.70	0.00	45.89	2.59
384	497	6.402222	CAGAGCTAAGGATATACCAATGTCC	58.598	44.000	0.00	0.00	42.30	4.02
403	846	9.254133	CAATGTCCTCGCCTATATAAATATCTG	57.746	37.037	0.00	0.00	0.00	2.90
405	848	7.997482	TGTCCTCGCCTATATAAATATCTGAC	58.003	38.462	0.00	0.00	0.00	3.51
414	857	7.766278	CCTATATAAATATCTGACAGGTGTGGC	59.234	40.741	1.81	0.00	0.00	5.01
455	898	8.713737	TGAGACATAATCAAATCTCAGTCAAG	57.286	34.615	0.00	0.00	41.99	3.02
675	1118	3.946558	AGGAATATAGTATCGACCGAGGC	59.053	47.826	0.00	0.00	0.00	4.70
676	1119	3.242673	GGAATATAGTATCGACCGAGGCG	60.243	52.174	0.00	0.00	0.00	5.52
677	1120	2.462456	TATAGTATCGACCGAGGCGT	57.538	50.000	0.00	0.00	0.00	5.68
678	1121	2.462456	ATAGTATCGACCGAGGCGTA	57.538	50.000	0.00	0.00	0.00	4.42
679	1122	2.238942	TAGTATCGACCGAGGCGTAA	57.761	50.000	0.00	0.00	0.00	3.18
680	1123	0.659957	AGTATCGACCGAGGCGTAAC	59.340	55.000	0.00	0.15	0.00	2.50
681	1124	0.655626	GTATCGACCGAGGCGTAACG	60.656	60.000	0.00	0.00	0.00	3.18
717	1273	9.058174	TCAACCGAGACTTAACAAAATTGATAA	57.942	29.630	0.00	0.00	0.00	1.75
839	1918	2.793278	AAAGAAACAACGGCATGGAC	57.207	45.000	0.00	0.00	0.00	4.02
962	2173	2.095263	GTGTGGTTGATGTATGCACCAC	60.095	50.000	12.49	12.49	45.49	4.16
1145	2427	4.392921	TCTCGGTGATCTTGATTTCTCC	57.607	45.455	0.00	0.00	0.00	3.71
1146	2428	3.119291	CTCGGTGATCTTGATTTCTCCG	58.881	50.000	7.00	7.00	45.57	4.63
1147	2429	2.496070	TCGGTGATCTTGATTTCTCCGT	59.504	45.455	11.65	0.00	44.88	4.69
1148	2430	2.604914	CGGTGATCTTGATTTCTCCGTG	59.395	50.000	5.52	0.00	41.61	4.94
1149	2431	3.676049	CGGTGATCTTGATTTCTCCGTGA	60.676	47.826	5.52	0.00	41.61	4.35
1150	2432	4.446371	GGTGATCTTGATTTCTCCGTGAT	58.554	43.478	0.00	0.00	0.00	3.06
1177	2459	1.153745	GATGGACAGCGCGAGAAGT	60.154	57.895	12.10	0.59	0.00	3.01
1651	2933	2.811317	GCTCAGTACAAGCGCGCT	60.811	61.111	31.32	31.32	0.00	5.92
1659	2941	0.387622	TACAAGCGCGCTTACTTCGT	60.388	50.000	42.41	34.72	34.50	3.85
2176	3482	1.289380	GAGGACCGTGCGACTCTTT	59.711	57.895	0.00	0.00	0.00	2.52
2252	3570	0.968901	CAGCATGGTGCCCAAGACAT	60.969	55.000	12.67	0.00	46.52	3.06
2270	3594	4.964897	AGACATACAAGAGATCCATGGACA	59.035	41.667	18.99	0.00	0.00	4.02
2391	3723	3.004862	GCTTGCTTCCAAATTTCCATGG	58.995	45.455	4.97	4.97	38.09	3.66
2392	3724	2.766345	TGCTTCCAAATTTCCATGGC	57.234	45.000	6.96	0.00	36.62	4.40
2430	3763	2.290260	TGATCGATCCAAGTGTTTGCCT	60.290	45.455	22.31	0.00	32.79	4.75
2461	3794	6.274157	TCCTCTTCTTCTCATACACAAGTC	57.726	41.667	0.00	0.00	0.00	3.01
2571	3904	7.459125	ACCAATTATGCCCTAGATATCTCTGAA	59.541	37.037	8.95	0.00	32.66	3.02
2572	3905	7.986320	CCAATTATGCCCTAGATATCTCTGAAG	59.014	40.741	8.95	0.59	32.66	3.02
3133	4475	9.197694	CGTTCGAAATTTTCCTAGATCTATGAT	57.802	33.333	8.35	0.00	0.00	2.45
3145	4487	9.261035	TCCTAGATCTATGATTATCAAAGGGTC	57.739	37.037	2.11	0.00	32.48	4.46
3158	4500	6.843069	ATCAAAGGGTCAAAAATTTCAACG	57.157	33.333	0.00	0.00	0.00	4.10
3159	4501	5.967088	TCAAAGGGTCAAAAATTTCAACGA	58.033	33.333	0.00	0.00	0.00	3.85
3160	4502	6.398918	TCAAAGGGTCAAAAATTTCAACGAA	58.601	32.000	0.00	0.00	0.00	3.85
3161	4503	6.874134	TCAAAGGGTCAAAAATTTCAACGAAA	59.126	30.769	0.00	0.00	35.94	3.46
3162	4504	7.550906	TCAAAGGGTCAAAAATTTCAACGAAAT	59.449	29.630	0.00	0.00	43.07	2.17
3206	4548	7.475137	TCAGTGGGGTCCAAAATATTTTTAG	57.525	36.000	10.77	6.11	34.18	1.85
3210	4552	4.471747	GGGGTCCAAAATATTTTTAGCCCA	59.528	41.667	32.26	9.33	43.76	5.36
3216	4558	8.094548	GTCCAAAATATTTTTAGCCCAGAAAGT	58.905	33.333	10.77	0.00	0.00	2.66
3334	4688	7.585286	TGCAAATTTCACATATTTCAGAAGC	57.415	32.000	0.00	0.00	0.00	3.86
3342	4696	7.707624	TCACATATTTCAGAAGCTCCAAAAT	57.292	32.000	0.00	0.00	0.00	1.82
3379	4733	7.652909	TCGAAATTGAAAAGCTCAACAAATGAT	59.347	29.630	0.00	0.00	46.80	2.45
3394	4748	8.591940	TCAACAAATGATCCCATTTCATACAAA	58.408	29.630	0.00	0.00	46.83	2.83
3396	4750	8.137745	ACAAATGATCCCATTTCATACAAACT	57.862	30.769	0.00	0.00	46.83	2.66
3441	4795	5.503498	TGTAAAACTAATGTCGCACAACAC	58.497	37.500	0.00	0.00	30.55	3.32
3451	4805	3.002862	TGTCGCACAACACTAATGGAAAC	59.997	43.478	0.00	0.00	0.00	2.78
3454	4808	4.024387	TCGCACAACACTAATGGAAACTTC	60.024	41.667	0.00	0.00	0.00	3.01
3462	4816	8.402472	CAACACTAATGGAAACTTCAGTTGTTA	58.598	33.333	0.00	0.00	38.44	2.41
3476	4830	1.798223	GTTGTTAGTGATGTGCGAGCA	59.202	47.619	0.00	0.00	0.00	4.26
3488	4842	3.387397	TGTGCGAGCATAGATGAATGAG	58.613	45.455	0.00	0.00	0.00	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
147	158	6.712549	TGCGTGTATAGATGCTCGTATATAC	58.287	40.000	14.53	2.53	33.19	1.47
161	172	3.552273	GGGGTGAGTGTATGCGTGTATAG	60.552	52.174	0.00	0.00	0.00	1.31
168	179	0.248907	CGTAGGGGTGAGTGTATGCG	60.249	60.000	0.00	0.00	0.00	4.73
182	193	1.518572	GGGTGTGTGCGATCGTAGG	60.519	63.158	17.81	0.00	0.00	3.18
207	220	1.143813	ATTGGAGGTGCTCATAGGGG	58.856	55.000	0.00	0.00	31.08	4.79
263	376	0.887836	TACGAGCCGCCTACGATGAT	60.888	55.000	8.73	0.00	43.93	2.45
294	407	1.009389	GCGTTCAGTGGGAAGAGACG	61.009	60.000	0.00	0.00	35.82	4.18
308	421	1.977594	ATTTCCGGTGATGCGCGTTC	61.978	55.000	8.43	6.08	0.00	3.95
328	441	9.693739	TGCCTTTATTACTGGATTTAATTCTGA	57.306	29.630	0.00	0.00	0.00	3.27
331	444	9.249457	GCTTGCCTTTATTACTGGATTTAATTC	57.751	33.333	0.00	0.00	0.00	2.17
351	464	1.028868	CCTTAGCTCTGGTGCTTGCC	61.029	60.000	0.00	0.00	43.74	4.52
367	480	3.008049	GGCGAGGACATTGGTATATCCTT	59.992	47.826	0.00	0.00	41.79	3.36
372	485	8.598202	TTTATATAGGCGAGGACATTGGTATA	57.402	34.615	0.00	0.00	0.00	1.47
373	486	7.490657	TTTATATAGGCGAGGACATTGGTAT	57.509	36.000	0.00	0.00	0.00	2.73
384	497	7.918033	CACCTGTCAGATATTTATATAGGCGAG	59.082	40.741	0.00	0.00	0.00	5.03
403	846	3.265791	CTGAAATCTAGCCACACCTGTC	58.734	50.000	0.00	0.00	0.00	3.51
405	848	3.265791	GACTGAAATCTAGCCACACCTG	58.734	50.000	0.00	0.00	0.00	4.00
652	1095	4.398673	GCCTCGGTCGATACTATATTCCTT	59.601	45.833	0.00	0.00	0.00	3.36
653	1096	3.946558	GCCTCGGTCGATACTATATTCCT	59.053	47.826	0.00	0.00	0.00	3.36
654	1097	3.242673	CGCCTCGGTCGATACTATATTCC	60.243	52.174	0.00	0.00	0.00	3.01
655	1098	3.373439	ACGCCTCGGTCGATACTATATTC	59.627	47.826	6.75	0.00	0.00	1.75
656	1099	3.341823	ACGCCTCGGTCGATACTATATT	58.658	45.455	6.75	0.00	0.00	1.28
657	1100	2.983229	ACGCCTCGGTCGATACTATAT	58.017	47.619	6.75	0.00	0.00	0.86
658	1101	2.462456	ACGCCTCGGTCGATACTATA	57.538	50.000	6.75	0.00	0.00	1.31
659	1102	2.462456	TACGCCTCGGTCGATACTAT	57.538	50.000	6.75	0.00	0.00	2.12
660	1103	1.867233	GTTACGCCTCGGTCGATACTA	59.133	52.381	6.75	0.00	0.00	1.82
661	1104	0.659957	GTTACGCCTCGGTCGATACT	59.340	55.000	6.75	0.00	0.00	2.12
662	1105	0.655626	CGTTACGCCTCGGTCGATAC	60.656	60.000	0.00	0.00	0.00	2.24
663	1106	0.809636	TCGTTACGCCTCGGTCGATA	60.810	55.000	0.00	0.00	0.00	2.92
664	1107	1.647545	TTCGTTACGCCTCGGTCGAT	61.648	55.000	0.00	0.00	31.39	3.59
665	1108	2.244436	CTTCGTTACGCCTCGGTCGA	62.244	60.000	0.00	0.00	0.00	4.20
666	1109	1.866496	CTTCGTTACGCCTCGGTCG	60.866	63.158	0.00	0.00	0.00	4.79
667	1110	0.387750	AACTTCGTTACGCCTCGGTC	60.388	55.000	0.00	0.00	0.00	4.79
668	1111	0.032540	AAACTTCGTTACGCCTCGGT	59.967	50.000	0.00	0.00	0.00	4.69
669	1112	0.712222	GAAACTTCGTTACGCCTCGG	59.288	55.000	0.00	0.00	0.00	4.63
670	1113	1.385743	CTGAAACTTCGTTACGCCTCG	59.614	52.381	0.00	0.00	0.00	4.63
671	1114	2.401351	ACTGAAACTTCGTTACGCCTC	58.599	47.619	0.00	0.00	0.00	4.70
672	1115	2.223876	TGACTGAAACTTCGTTACGCCT	60.224	45.455	0.00	0.00	0.00	5.52
673	1116	2.129607	TGACTGAAACTTCGTTACGCC	58.870	47.619	0.00	0.00	0.00	5.68
674	1117	3.529085	GTTGACTGAAACTTCGTTACGC	58.471	45.455	0.00	0.00	0.00	4.42
675	1118	3.361339	CGGTTGACTGAAACTTCGTTACG	60.361	47.826	0.00	0.00	0.00	3.18
676	1119	3.798337	TCGGTTGACTGAAACTTCGTTAC	59.202	43.478	0.00	0.00	0.00	2.50
677	1120	4.044336	TCGGTTGACTGAAACTTCGTTA	57.956	40.909	0.00	0.00	0.00	3.18
678	1121	2.864343	CTCGGTTGACTGAAACTTCGTT	59.136	45.455	0.00	0.00	0.00	3.85
679	1122	2.100252	TCTCGGTTGACTGAAACTTCGT	59.900	45.455	0.00	0.00	0.00	3.85
680	1123	2.471743	GTCTCGGTTGACTGAAACTTCG	59.528	50.000	0.00	0.00	34.39	3.79
681	1124	3.718815	AGTCTCGGTTGACTGAAACTTC	58.281	45.455	5.99	0.00	44.64	3.01
717	1273	9.886132	ACACGATTCCATTCTTTTAGTATTAGT	57.114	29.630	0.00	0.00	0.00	2.24
819	1896	2.693074	AGTCCATGCCGTTGTTTCTTTT	59.307	40.909	0.00	0.00	0.00	2.27
829	1908	2.038952	ACATGCATATAGTCCATGCCGT	59.961	45.455	0.00	0.27	46.65	5.68
831	1910	3.415212	ACACATGCATATAGTCCATGCC	58.585	45.455	0.00	0.00	46.65	4.40
962	2173	1.550524	TGTGAGTGTGGCTAAGCTAGG	59.449	52.381	0.00	0.00	0.00	3.02
1145	2427	0.313987	TCCATCCGAATCCGATCACG	59.686	55.000	0.00	0.00	38.22	4.35
1146	2428	1.068588	TGTCCATCCGAATCCGATCAC	59.931	52.381	0.00	0.00	38.22	3.06
1147	2429	1.341209	CTGTCCATCCGAATCCGATCA	59.659	52.381	0.00	0.00	38.22	2.92
1148	2430	1.937108	GCTGTCCATCCGAATCCGATC	60.937	57.143	0.00	0.00	38.22	3.69
1149	2431	0.034059	GCTGTCCATCCGAATCCGAT	59.966	55.000	0.00	0.00	38.22	4.18
1150	2432	1.441729	GCTGTCCATCCGAATCCGA	59.558	57.895	0.00	0.00	38.22	4.55
2146	3452	2.662596	GTCCTCATCACCGGTGCA	59.337	61.111	30.25	18.56	0.00	4.57
2176	3482	2.649034	GTGAGAAGGTCGACGCCA	59.351	61.111	9.92	0.00	0.00	5.69
2252	3570	3.449918	TGGTGTCCATGGATCTCTTGTA	58.550	45.455	19.62	0.00	0.00	2.41
2313	3643	0.803768	CAGCGCGAAGTCTATGCACT	60.804	55.000	12.10	0.00	0.00	4.40
2353	3683	0.901580	AGCAAAGCAACCATGGAGGG	60.902	55.000	21.47	8.25	43.89	4.30
2489	3822	6.704310	AGAACGGGCTTAATTTACAGTAGAA	58.296	36.000	0.00	0.00	0.00	2.10
2571	3904	4.560739	TCCAGATCTCTCTCTCTCTCTCT	58.439	47.826	0.00	0.00	0.00	3.10
2572	3905	4.963318	TCCAGATCTCTCTCTCTCTCTC	57.037	50.000	0.00	0.00	0.00	3.20
2970	4312	2.174854	ACCAGTGCCCACTTTAGTTTCT	59.825	45.455	0.00	0.00	40.20	2.52
3100	4442	3.059393	AGGAAAATTTCGAACGAACGGAC	60.059	43.478	9.15	1.67	33.41	4.79
3133	4475	8.198109	TCGTTGAAATTTTTGACCCTTTGATAA	58.802	29.630	0.00	0.00	0.00	1.75
3135	4477	6.578023	TCGTTGAAATTTTTGACCCTTTGAT	58.422	32.000	0.00	0.00	0.00	2.57
3137	4479	6.654793	TTCGTTGAAATTTTTGACCCTTTG	57.345	33.333	0.00	0.00	0.00	2.77
3138	4480	7.857734	ATTTCGTTGAAATTTTTGACCCTTT	57.142	28.000	0.00	0.00	38.89	3.11
3206	4548	0.322975	TCTGCTCTGACTTTCTGGGC	59.677	55.000	0.00	0.00	41.51	5.36
3210	4552	8.627208	TTAATTTGAATCTGCTCTGACTTTCT	57.373	30.769	0.00	0.00	0.00	2.52
3216	4558	9.234827	TCTGAAATTAATTTGAATCTGCTCTGA	57.765	29.630	17.98	7.08	0.00	3.27
3342	4696	6.035542	GCTTTTCAATTTCGAGAACAAACCAA	59.964	34.615	0.00	0.00	0.00	3.67
3351	4705	5.749596	TGTTGAGCTTTTCAATTTCGAGA	57.250	34.783	0.00	0.00	46.85	4.04
3379	4733	8.472007	AGTTTGTAAGTTTGTATGAAATGGGA	57.528	30.769	0.00	0.00	0.00	4.37
3412	4766	7.369607	TGTGCGACATTAGTTTTACAGTAGTA	58.630	34.615	0.00	0.00	0.00	1.82
3426	4780	4.570930	TCCATTAGTGTTGTGCGACATTA	58.429	39.130	0.00	0.00	0.00	1.90
3433	4787	5.181690	TGAAGTTTCCATTAGTGTTGTGC	57.818	39.130	0.00	0.00	0.00	4.57
3441	4795	8.378172	TCACTAACAACTGAAGTTTCCATTAG	57.622	34.615	0.00	3.26	35.83	1.73
3451	4805	3.740832	TCGCACATCACTAACAACTGAAG	59.259	43.478	0.00	0.00	0.00	3.02
3454	4808	2.159787	GCTCGCACATCACTAACAACTG	60.160	50.000	0.00	0.00	0.00	3.16
3462	4816	2.363359	TCATCTATGCTCGCACATCACT	59.637	45.455	0.00	0.00	0.00	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.