Multiple sequence alignment - TraesCS1D01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G378200 chr1D 100.000 7845 0 0 1 7845 454221590 454229434 0.000000e+00 14488.0
1 TraesCS1D01G378200 chr1D 96.667 60 1 1 744 802 454222295 454222354 1.800000e-16 99.0
2 TraesCS1D01G378200 chr1D 96.667 60 1 1 706 765 454222333 454222391 1.800000e-16 99.0
3 TraesCS1D01G378200 chr1A 89.548 2746 158 44 925 3605 548557994 548560675 0.000000e+00 3362.0
4 TraesCS1D01G378200 chr1A 93.728 2009 103 11 5841 7836 548562878 548564876 0.000000e+00 2990.0
5 TraesCS1D01G378200 chr1A 94.454 1208 39 7 3574 4778 548560707 548561889 0.000000e+00 1834.0
6 TraesCS1D01G378200 chr1A 93.573 778 43 3 4858 5629 548561886 548562662 0.000000e+00 1153.0
7 TraesCS1D01G378200 chr1A 95.135 185 9 0 5654 5838 548562657 548562841 7.700000e-75 292.0
8 TraesCS1D01G378200 chr1A 90.805 87 7 1 848 934 548557884 548557969 1.790000e-21 115.0
9 TraesCS1D01G378200 chr1B 89.553 1857 88 41 4 1812 624723817 624725615 0.000000e+00 2257.0
10 TraesCS1D01G378200 chr1B 89.749 1512 115 16 1916 3409 624725612 624727101 0.000000e+00 1897.0
11 TraesCS1D01G378200 chr1B 90.704 1463 74 24 5535 6943 624729745 624731199 0.000000e+00 1892.0
12 TraesCS1D01G378200 chr1B 94.399 982 39 11 3804 4780 624727106 624728076 0.000000e+00 1495.0
13 TraesCS1D01G378200 chr1B 95.490 510 23 0 5042 5551 624729220 624729729 0.000000e+00 815.0
14 TraesCS1D01G378200 chr1B 86.486 185 8 4 4858 5042 624728071 624728238 3.740000e-43 187.0
15 TraesCS1D01G378200 chr1B 95.775 71 3 0 7083 7153 624731259 624731329 1.790000e-21 115.0
16 TraesCS1D01G378200 chr2D 85.625 160 21 2 242 400 213696937 213696779 4.870000e-37 167.0
17 TraesCS1D01G378200 chr2D 84.868 152 21 2 246 396 271511773 271511923 1.360000e-32 152.0
18 TraesCS1D01G378200 chr2D 87.692 65 7 1 4786 4850 643777804 643777867 3.040000e-09 75.0
19 TraesCS1D01G378200 chr2B 85.000 160 22 2 242 400 265422038 265421880 2.270000e-35 161.0
20 TraesCS1D01G378200 chr2A 84.516 155 22 2 246 399 350732482 350732329 1.360000e-32 152.0
21 TraesCS1D01G378200 chr4B 85.714 147 15 6 246 389 471919668 471919811 4.900000e-32 150.0
22 TraesCS1D01G378200 chr4B 84.524 84 13 0 4060 4143 540320934 540320851 5.040000e-12 84.2
23 TraesCS1D01G378200 chr6B 82.781 151 23 3 246 395 717420958 717420810 1.780000e-26 132.0
24 TraesCS1D01G378200 chr6B 83.217 143 20 3 246 387 153394810 153394949 2.300000e-25 128.0
25 TraesCS1D01G378200 chr6A 84.559 136 17 4 240 373 96981884 96982017 1.780000e-26 132.0
26 TraesCS1D01G378200 chr3A 90.411 73 7 0 4785 4857 7083654 7083582 6.480000e-16 97.1
27 TraesCS1D01G378200 chr4D 85.227 88 12 1 4057 4143 437687372 437687285 1.080000e-13 89.8
28 TraesCS1D01G378200 chr4A 84.524 84 13 0 4060 4143 30397134 30397217 5.040000e-12 84.2
29 TraesCS1D01G378200 chr7A 88.235 68 7 1 4799 4866 101305903 101305969 6.530000e-11 80.5
30 TraesCS1D01G378200 chr7A 100.000 28 0 0 4785 4812 126924402 126924375 1.400000e-02 52.8
31 TraesCS1D01G378200 chr7D 84.286 70 9 2 649 717 559075610 559075678 5.080000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G378200 chr1D 454221590 454229434 7844 False 14488.000000 14488 100.000000 1 7845 1 chr1D.!!$F1 7844
1 TraesCS1D01G378200 chr1A 548557884 548564876 6992 False 1624.333333 3362 92.873833 848 7836 6 chr1A.!!$F1 6988
2 TraesCS1D01G378200 chr1B 624723817 624731329 7512 False 1236.857143 2257 91.736571 4 7153 7 chr1B.!!$F1 7149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 781 0.107831 AGTGCCTTTGTTACCGCTCA 59.892 50.0 0.00 0.00 0.00 4.26 F
1519 1602 0.324460 CTAGTGGAAGGACGGTCCCT 60.324 60.0 23.21 11.18 37.19 4.20 F
2270 2385 0.464013 TTCCCTCGCTCCTCGTCTAG 60.464 60.0 0.00 0.00 39.67 2.43 F
2836 2977 1.136828 TGTACTTCTGGCTTGTGGGT 58.863 50.0 0.00 0.00 0.00 4.51 F
4536 4756 0.179056 AACTCACTGTTGGTGGTCGG 60.179 55.0 0.00 0.00 45.38 4.79 F
5590 6832 0.319727 CGGCAGGATCTGAGAGATGC 60.320 60.0 7.54 7.54 42.55 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2726 2866 0.034337 TCACTTCAACTGGTACCGGC 59.966 55.000 21.25 0.0 0.00 6.13 R
2941 3082 1.243902 TTCCCGATTCACCTTGTTGC 58.756 50.000 0.00 0.0 0.00 4.17 R
3755 3971 1.081892 GACTGCCAGTGTACTGCATG 58.918 55.000 0.00 0.0 42.47 4.06 R
4578 4798 0.391395 TGTACGTTTGTATGGCCCCG 60.391 55.000 0.00 0.0 32.11 5.73 R
6513 7809 1.002576 TGCTCGTAGACGTTGTCGAAA 60.003 47.619 1.46 0.0 40.80 3.46 R
7272 8574 0.179124 CGCAAGTGCCTAGAGGAGTC 60.179 60.000 0.00 0.0 37.91 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.307760 AGACCTCTTTTTGTTGCGCG 59.692 50.000 0.00 0.00 0.00 6.86
82 85 1.927487 ATTGTGCCAAAGATGCTCCA 58.073 45.000 0.00 0.00 0.00 3.86
88 91 1.551883 GCCAAAGATGCTCCACCAAAT 59.448 47.619 0.00 0.00 0.00 2.32
124 127 3.207778 TCGACCCGAACACTGAATTTTT 58.792 40.909 0.00 0.00 31.06 1.94
146 149 2.124507 TAAGAGCCCACGCAAAGCCT 62.125 55.000 0.00 0.00 37.52 4.58
147 150 3.741476 GAGCCCACGCAAAGCCTG 61.741 66.667 0.00 0.00 37.52 4.85
148 151 4.269523 AGCCCACGCAAAGCCTGA 62.270 61.111 0.00 0.00 37.52 3.86
149 152 3.294493 GCCCACGCAAAGCCTGAA 61.294 61.111 0.00 0.00 34.03 3.02
150 153 2.855514 GCCCACGCAAAGCCTGAAA 61.856 57.895 0.00 0.00 34.03 2.69
151 154 1.739049 CCCACGCAAAGCCTGAAAA 59.261 52.632 0.00 0.00 0.00 2.29
152 155 0.597377 CCCACGCAAAGCCTGAAAAC 60.597 55.000 0.00 0.00 0.00 2.43
153 156 0.597377 CCACGCAAAGCCTGAAAACC 60.597 55.000 0.00 0.00 0.00 3.27
154 157 0.597377 CACGCAAAGCCTGAAAACCC 60.597 55.000 0.00 0.00 0.00 4.11
166 169 1.001631 AAAACCCAGCCCATAGCCC 59.998 57.895 0.00 0.00 45.47 5.19
172 175 2.122413 AGCCCATAGCCCGATCCA 60.122 61.111 0.00 0.00 45.47 3.41
176 179 1.823250 GCCCATAGCCCGATCCAAAAT 60.823 52.381 0.00 0.00 34.35 1.82
340 343 9.438291 CATTACTTTATGAAATTAACGGCTCAG 57.562 33.333 0.00 0.00 0.00 3.35
391 395 6.357367 TGAAAAATATGAGGTAAGAGGGAGC 58.643 40.000 0.00 0.00 0.00 4.70
425 429 1.404315 CCGTCTAGCCTTCCACAGTTC 60.404 57.143 0.00 0.00 0.00 3.01
430 434 1.062488 AGCCTTCCACAGTTCCACCT 61.062 55.000 0.00 0.00 0.00 4.00
459 463 5.296780 CCTTTGTAATAACTGACATGGCGAT 59.703 40.000 0.00 0.00 0.00 4.58
477 481 2.419673 CGATGGTTGAAGCACTTGCATA 59.580 45.455 0.00 0.00 45.16 3.14
489 493 2.107204 CACTTGCATATAGGGAAGGCCT 59.893 50.000 20.49 0.00 40.15 5.19
570 574 2.831685 TTCGAAGGTAGAGCAGCAAA 57.168 45.000 0.00 0.00 0.00 3.68
636 640 8.592809 GGATCAGGGAAGACATATATGGATATC 58.407 40.741 16.96 9.01 0.00 1.63
643 647 7.506261 GGAAGACATATATGGATATCGGTACCT 59.494 40.741 16.96 0.00 0.00 3.08
650 654 9.742144 ATATATGGATATCGGTACCTCACTATC 57.258 37.037 10.90 10.07 0.00 2.08
655 659 3.377253 TCGGTACCTCACTATCCTTGT 57.623 47.619 10.90 0.00 0.00 3.16
769 777 2.467566 ACCTAGTGCCTTTGTTACCG 57.532 50.000 0.00 0.00 0.00 4.02
771 779 1.338769 CCTAGTGCCTTTGTTACCGCT 60.339 52.381 0.00 0.00 0.00 5.52
772 780 2.000447 CTAGTGCCTTTGTTACCGCTC 59.000 52.381 0.00 0.00 0.00 5.03
773 781 0.107831 AGTGCCTTTGTTACCGCTCA 59.892 50.000 0.00 0.00 0.00 4.26
774 782 0.948678 GTGCCTTTGTTACCGCTCAA 59.051 50.000 0.00 0.00 0.00 3.02
775 783 1.335496 GTGCCTTTGTTACCGCTCAAA 59.665 47.619 0.00 0.00 33.44 2.69
776 784 2.025155 TGCCTTTGTTACCGCTCAAAA 58.975 42.857 0.00 0.00 33.99 2.44
777 785 2.625790 TGCCTTTGTTACCGCTCAAAAT 59.374 40.909 0.00 0.00 33.99 1.82
781 789 5.867174 GCCTTTGTTACCGCTCAAAATAAAT 59.133 36.000 0.00 0.00 33.99 1.40
805 813 5.914898 AAAAACTTAGTGCCTTTGTCTGT 57.085 34.783 0.00 0.00 0.00 3.41
806 814 5.500645 AAAACTTAGTGCCTTTGTCTGTC 57.499 39.130 0.00 0.00 0.00 3.51
807 815 4.423625 AACTTAGTGCCTTTGTCTGTCT 57.576 40.909 0.00 0.00 0.00 3.41
808 816 5.546621 AACTTAGTGCCTTTGTCTGTCTA 57.453 39.130 0.00 0.00 0.00 2.59
809 817 5.546621 ACTTAGTGCCTTTGTCTGTCTAA 57.453 39.130 0.00 0.00 0.00 2.10
810 818 5.925509 ACTTAGTGCCTTTGTCTGTCTAAA 58.074 37.500 0.00 0.00 0.00 1.85
811 819 5.992217 ACTTAGTGCCTTTGTCTGTCTAAAG 59.008 40.000 0.00 0.00 34.49 1.85
847 855 9.577222 AAAAACCTACTTACTGTGCCTAAAATA 57.423 29.630 0.00 0.00 0.00 1.40
850 858 9.749340 AACCTACTTACTGTGCCTAAAATAAAT 57.251 29.630 0.00 0.00 0.00 1.40
852 860 9.391006 CCTACTTACTGTGCCTAAAATAAATGA 57.609 33.333 0.00 0.00 0.00 2.57
896 904 1.398390 GAGCCGCCATTACAGTCTTTG 59.602 52.381 0.00 0.00 0.00 2.77
952 994 5.739752 CTCACACTTGAGTTCAACATCAA 57.260 39.130 0.00 0.00 43.95 2.57
953 995 5.484173 TCACACTTGAGTTCAACATCAAC 57.516 39.130 0.00 0.00 32.25 3.18
954 996 5.185454 TCACACTTGAGTTCAACATCAACT 58.815 37.500 0.00 0.00 36.77 3.16
955 997 5.294306 TCACACTTGAGTTCAACATCAACTC 59.706 40.000 5.75 5.75 46.85 3.01
956 998 4.576463 ACACTTGAGTTCAACATCAACTCC 59.424 41.667 9.50 0.00 46.35 3.85
957 999 4.818546 CACTTGAGTTCAACATCAACTCCT 59.181 41.667 9.50 0.00 46.35 3.69
958 1000 5.049818 CACTTGAGTTCAACATCAACTCCTC 60.050 44.000 9.50 0.00 46.35 3.71
974 1016 3.051341 ACTCCTCTCTCTCTCCCTCTCTA 60.051 52.174 0.00 0.00 0.00 2.43
975 1017 3.314693 TCCTCTCTCTCTCCCTCTCTAC 58.685 54.545 0.00 0.00 0.00 2.59
985 1027 3.051341 TCTCCCTCTCTACCTCTCTCTCT 60.051 52.174 0.00 0.00 0.00 3.10
1317 1376 2.742372 CCCGCCTGTCAAAGACCG 60.742 66.667 0.00 0.00 0.00 4.79
1407 1484 2.358247 GCCGAATCCACACACGGT 60.358 61.111 0.00 0.00 45.91 4.83
1511 1594 1.601419 CGGGTTCGCTAGTGGAAGGA 61.601 60.000 2.90 0.00 0.00 3.36
1516 1599 1.139095 CGCTAGTGGAAGGACGGTC 59.861 63.158 0.00 0.00 0.00 4.79
1518 1601 1.957765 GCTAGTGGAAGGACGGTCCC 61.958 65.000 23.21 9.13 37.19 4.46
1519 1602 0.324460 CTAGTGGAAGGACGGTCCCT 60.324 60.000 23.21 11.18 37.19 4.20
1580 1663 1.001641 CTTGGTGCCTTGGAGGAGG 60.002 63.158 0.00 0.00 37.67 4.30
1591 1674 1.081481 TGGAGGAGGGTGAGACTGTA 58.919 55.000 0.00 0.00 0.00 2.74
1599 1682 1.668101 GGTGAGACTGTAGAGGCGGG 61.668 65.000 0.00 0.00 29.20 6.13
1602 1685 1.381872 AGACTGTAGAGGCGGGCAT 60.382 57.895 3.78 0.00 29.20 4.40
1627 1710 1.000396 GCCTGCTGGTTTGGAGGAT 60.000 57.895 11.69 0.00 46.72 3.24
1629 1712 1.318158 CCTGCTGGTTTGGAGGATGC 61.318 60.000 0.51 0.00 46.72 3.91
1630 1713 0.609957 CTGCTGGTTTGGAGGATGCA 60.610 55.000 0.00 0.00 30.91 3.96
1641 1724 0.954449 GAGGATGCAGATGCGGATGG 60.954 60.000 0.00 0.00 45.83 3.51
1665 1748 1.883732 CTTCGTCGGAAGGCTCTGA 59.116 57.895 0.00 0.00 44.83 3.27
1739 1837 1.004277 GAGTTACCATCCCACCAGCAA 59.996 52.381 0.00 0.00 0.00 3.91
1747 1845 2.406616 CCCACCAGCAACGGTATGC 61.407 63.158 2.31 2.31 46.78 3.14
1763 1861 3.414700 GCGTTCCTCCGTGTGCTG 61.415 66.667 0.00 0.00 0.00 4.41
1768 1874 2.695359 GTTCCTCCGTGTGCTGAATTA 58.305 47.619 0.00 0.00 0.00 1.40
1780 1886 6.128445 CGTGTGCTGAATTACTCTCTGATTTT 60.128 38.462 0.00 0.00 0.00 1.82
1811 1919 5.363580 TGATGTGCCATAGATAGTGTTCTCA 59.636 40.000 0.00 0.00 0.00 3.27
1812 1920 5.876651 TGTGCCATAGATAGTGTTCTCAT 57.123 39.130 0.00 0.00 0.00 2.90
1829 1938 5.008619 TCTCATCATTCTCAGTCTTGCTC 57.991 43.478 0.00 0.00 0.00 4.26
1833 1942 4.613925 TCATTCTCAGTCTTGCTCTGTT 57.386 40.909 0.00 0.00 34.86 3.16
1837 1946 2.822561 TCTCAGTCTTGCTCTGTTCGAT 59.177 45.455 0.00 0.00 34.86 3.59
1886 1995 2.560504 ACTTTGTGATGTGTCTGCGAA 58.439 42.857 0.00 0.00 0.00 4.70
1892 2001 3.752747 TGTGATGTGTCTGCGAATTTCAT 59.247 39.130 0.00 0.00 0.00 2.57
1893 2002 4.142838 TGTGATGTGTCTGCGAATTTCATC 60.143 41.667 0.00 0.00 0.00 2.92
1897 2006 1.739466 TGTCTGCGAATTTCATCAGCC 59.261 47.619 9.55 1.89 0.00 4.85
1902 2011 2.744741 TGCGAATTTCATCAGCCGTAAA 59.255 40.909 0.00 0.00 0.00 2.01
1903 2012 3.189495 TGCGAATTTCATCAGCCGTAAAA 59.811 39.130 0.00 0.00 0.00 1.52
1904 2013 4.162812 GCGAATTTCATCAGCCGTAAAAA 58.837 39.130 0.00 0.00 0.00 1.94
1905 2014 4.262976 GCGAATTTCATCAGCCGTAAAAAG 59.737 41.667 0.00 0.00 0.00 2.27
1906 2015 5.627172 CGAATTTCATCAGCCGTAAAAAGA 58.373 37.500 0.00 0.00 0.00 2.52
1907 2016 5.508224 CGAATTTCATCAGCCGTAAAAAGAC 59.492 40.000 0.00 0.00 0.00 3.01
1908 2017 6.575162 AATTTCATCAGCCGTAAAAAGACT 57.425 33.333 0.00 0.00 0.00 3.24
1909 2018 5.356882 TTTCATCAGCCGTAAAAAGACTG 57.643 39.130 0.00 0.00 0.00 3.51
1910 2019 4.265904 TCATCAGCCGTAAAAAGACTGA 57.734 40.909 0.00 0.00 41.28 3.41
1911 2020 4.832248 TCATCAGCCGTAAAAAGACTGAT 58.168 39.130 0.00 0.00 46.29 2.90
1912 2021 5.245531 TCATCAGCCGTAAAAAGACTGATT 58.754 37.500 0.00 0.00 43.69 2.57
1913 2022 5.705441 TCATCAGCCGTAAAAAGACTGATTT 59.295 36.000 0.00 0.00 43.69 2.17
1914 2023 5.607119 TCAGCCGTAAAAAGACTGATTTC 57.393 39.130 0.00 0.00 32.65 2.17
2026 2141 2.531206 CTGCTACGGTAGTTGAGCTTC 58.469 52.381 16.05 0.00 34.07 3.86
2113 2228 2.099263 CGAGTGATCACGGACCATAACT 59.901 50.000 19.85 0.00 36.20 2.24
2117 2232 6.045072 AGTGATCACGGACCATAACTTTTA 57.955 37.500 19.85 0.00 36.20 1.52
2118 2233 5.873164 AGTGATCACGGACCATAACTTTTAC 59.127 40.000 19.85 0.00 36.20 2.01
2119 2234 5.064325 GTGATCACGGACCATAACTTTTACC 59.936 44.000 10.69 0.00 0.00 2.85
2120 2235 4.895668 TCACGGACCATAACTTTTACCT 57.104 40.909 0.00 0.00 0.00 3.08
2121 2236 5.231702 TCACGGACCATAACTTTTACCTT 57.768 39.130 0.00 0.00 0.00 3.50
2154 2269 7.305533 CGAACAAACCGTAACCTTTTATGTTTG 60.306 37.037 9.82 9.82 42.05 2.93
2177 2292 5.175127 GTTTTTGTGGGAATCAGTTGTTGT 58.825 37.500 0.00 0.00 0.00 3.32
2200 2315 1.672881 CATCGCTTTCCCCATCTGTTC 59.327 52.381 0.00 0.00 0.00 3.18
2254 2369 7.384660 TGTTGCTGTCATGATATTTTTGTTTCC 59.615 33.333 0.00 0.00 0.00 3.13
2258 2373 6.851609 TGTCATGATATTTTTGTTTCCCTCG 58.148 36.000 0.00 0.00 0.00 4.63
2270 2385 0.464013 TTCCCTCGCTCCTCGTCTAG 60.464 60.000 0.00 0.00 39.67 2.43
2362 2480 4.498009 CCCATCGCATTATTGGTCAAACTC 60.498 45.833 0.00 0.00 0.00 3.01
2444 2564 8.178964 TGGAAACTTATTTCAAATACGAATCCG 58.821 33.333 0.80 0.00 45.26 4.18
2535 2675 5.670792 CCCAAAAAGAGGGGGTAATAAAC 57.329 43.478 0.00 0.00 42.90 2.01
2577 2717 8.645814 ATCAACATACGAGATAGGTATACCAA 57.354 34.615 23.87 0.00 38.89 3.67
2587 2727 8.141909 CGAGATAGGTATACCAAATGAAGTGAA 58.858 37.037 23.87 0.00 38.89 3.18
2591 2731 6.426587 AGGTATACCAAATGAAGTGAAGCAT 58.573 36.000 23.87 0.00 38.89 3.79
2598 2738 5.404096 CAAATGAAGTGAAGCATGCATACA 58.596 37.500 21.98 13.50 0.00 2.29
2626 2766 8.764287 CATGAAACTTTGGTCTGGAAATTTAAC 58.236 33.333 0.00 0.00 0.00 2.01
2680 2820 6.978674 TCTTAGGGACCACATCTTATACTG 57.021 41.667 0.00 0.00 0.00 2.74
2782 2922 6.881602 ACCTTGAAACTATGATCTGGAAACTC 59.118 38.462 0.00 0.00 0.00 3.01
2791 2931 8.037758 ACTATGATCTGGAAACTCAAGTGTAAG 58.962 37.037 0.00 0.00 0.00 2.34
2836 2977 1.136828 TGTACTTCTGGCTTGTGGGT 58.863 50.000 0.00 0.00 0.00 4.51
2941 3082 3.887621 TCCACAATAGGGAGAAGTTCG 57.112 47.619 0.00 0.00 0.00 3.95
2952 3093 2.210116 GAGAAGTTCGCAACAAGGTGA 58.790 47.619 1.28 0.00 0.00 4.02
3008 3149 5.423015 TCTGATAGGCATGACTTTCTTCAC 58.577 41.667 18.41 0.00 0.00 3.18
3056 3204 7.942341 TCAATTTTCAAACTATAGGTGGTCAGT 59.058 33.333 4.43 0.00 0.00 3.41
3098 3246 2.738846 CGTCTGTGCTGCTATTTCTTGT 59.261 45.455 0.00 0.00 0.00 3.16
3205 3358 6.961576 TGAACTTTTAACACAATCTTACCGG 58.038 36.000 0.00 0.00 0.00 5.28
3265 3418 1.139095 GACGGTTCCAGTAGCCTCG 59.861 63.158 0.00 0.00 0.00 4.63
3483 3636 6.546428 TTTCTACTCTTCAGGATACCCAAG 57.454 41.667 0.00 0.00 33.88 3.61
3487 3640 4.430441 ACTCTTCAGGATACCCAAGTCTT 58.570 43.478 0.00 0.00 33.88 3.01
3488 3641 4.468153 ACTCTTCAGGATACCCAAGTCTTC 59.532 45.833 0.00 0.00 33.88 2.87
3502 3655 5.237779 CCCAAGTCTTCGCAGTAACTTTTAA 59.762 40.000 0.00 0.00 29.78 1.52
3560 3713 5.822519 GGAAACATATTGATCTGCCTACACA 59.177 40.000 0.00 0.00 0.00 3.72
3659 3875 9.309516 TGTATCCTACTTCGATAAAATTGTGTC 57.690 33.333 0.00 0.00 0.00 3.67
3665 3881 5.643777 ACTTCGATAAAATTGTGTCTGGAGG 59.356 40.000 0.00 0.00 0.00 4.30
3676 3892 3.009033 TGTGTCTGGAGGAAATAACTGGG 59.991 47.826 0.00 0.00 0.00 4.45
3689 3905 9.816787 AGGAAATAACTGGGTTAATACTTTGAA 57.183 29.630 0.00 0.00 31.56 2.69
3772 3988 2.385013 TACATGCAGTACACTGGCAG 57.615 50.000 14.16 14.16 43.94 4.85
3879 4095 4.087182 TCTGTAGACCTGGTCCTAAACTG 58.913 47.826 22.81 17.61 32.18 3.16
4152 4368 6.148976 GTGGTCATTTGAAGGTTAGTAGGTTC 59.851 42.308 0.00 0.00 0.00 3.62
4230 4446 2.903135 GACACCAAATTCCCCCATTCAA 59.097 45.455 0.00 0.00 0.00 2.69
4300 4516 2.516702 AGTTTGTTACCCCCTTTGTCCT 59.483 45.455 0.00 0.00 0.00 3.85
4340 4556 3.646162 TGACCTTGTACAGTCTCCATTGT 59.354 43.478 14.32 0.00 34.02 2.71
4393 4609 9.577222 AACTTGCCTAAAATTAGTAACAAGGTA 57.423 29.630 20.24 2.04 37.92 3.08
4394 4610 9.749340 ACTTGCCTAAAATTAGTAACAAGGTAT 57.251 29.630 20.24 7.50 37.92 2.73
4536 4756 0.179056 AACTCACTGTTGGTGGTCGG 60.179 55.000 0.00 0.00 45.38 4.79
4578 4798 2.029560 CCTTCTCAAAGCCCTGAAAAGC 60.030 50.000 0.00 0.00 0.00 3.51
4629 4849 3.142393 CGATCCCCGCCAGAATCT 58.858 61.111 0.00 0.00 0.00 2.40
4724 4945 7.776107 AGCTTCTTTCTTTAGCTTTTCACTTT 58.224 30.769 0.00 0.00 42.30 2.66
4725 4946 8.903820 AGCTTCTTTCTTTAGCTTTTCACTTTA 58.096 29.630 0.00 0.00 42.30 1.85
4760 4981 2.162681 GCAGGCAAGTTTGTGGTCTAT 58.837 47.619 0.00 0.00 0.00 1.98
4815 5037 8.768957 AATCTCATGAATATAACATCGACTGG 57.231 34.615 0.00 0.00 0.00 4.00
4816 5038 6.691508 TCTCATGAATATAACATCGACTGGG 58.308 40.000 0.00 0.00 0.00 4.45
4817 5039 6.493458 TCTCATGAATATAACATCGACTGGGA 59.507 38.462 0.00 0.00 0.00 4.37
4818 5040 6.455647 TCATGAATATAACATCGACTGGGAC 58.544 40.000 0.00 0.00 0.00 4.46
4819 5041 5.862678 TGAATATAACATCGACTGGGACA 57.137 39.130 0.00 0.00 0.00 4.02
4820 5042 6.419484 TGAATATAACATCGACTGGGACAT 57.581 37.500 0.00 0.00 38.20 3.06
4821 5043 7.533289 TGAATATAACATCGACTGGGACATA 57.467 36.000 0.00 0.00 38.20 2.29
4822 5044 7.958088 TGAATATAACATCGACTGGGACATAA 58.042 34.615 0.00 0.00 38.20 1.90
4823 5045 7.870954 TGAATATAACATCGACTGGGACATAAC 59.129 37.037 0.00 0.00 38.20 1.89
4824 5046 2.579207 ACATCGACTGGGACATAACG 57.421 50.000 0.00 0.00 38.20 3.18
4825 5047 2.097036 ACATCGACTGGGACATAACGA 58.903 47.619 0.00 0.00 39.90 3.85
4826 5048 2.494471 ACATCGACTGGGACATAACGAA 59.506 45.455 0.00 0.00 39.35 3.85
4827 5049 2.933495 TCGACTGGGACATAACGAAG 57.067 50.000 0.00 0.00 38.20 3.79
4828 5050 2.165167 TCGACTGGGACATAACGAAGT 58.835 47.619 0.00 0.00 41.09 3.01
4851 5073 3.406728 CAGTCGACTGAGATTTAGCGA 57.593 47.619 36.73 0.00 46.59 4.93
4852 5074 3.358775 CAGTCGACTGAGATTTAGCGAG 58.641 50.000 36.73 7.99 46.59 5.03
4853 5075 3.064134 CAGTCGACTGAGATTTAGCGAGA 59.936 47.826 36.73 0.00 46.59 4.04
4854 5076 3.064271 AGTCGACTGAGATTTAGCGAGAC 59.936 47.826 19.30 0.00 0.00 3.36
4855 5077 3.064271 GTCGACTGAGATTTAGCGAGACT 59.936 47.826 8.70 0.00 0.00 3.24
4856 5078 3.064134 TCGACTGAGATTTAGCGAGACTG 59.936 47.826 0.00 0.00 0.00 3.51
4857 5079 3.064134 CGACTGAGATTTAGCGAGACTGA 59.936 47.826 0.00 0.00 0.00 3.41
4858 5080 4.260990 CGACTGAGATTTAGCGAGACTGAT 60.261 45.833 0.00 0.00 0.00 2.90
4859 5081 5.587289 GACTGAGATTTAGCGAGACTGATT 58.413 41.667 0.00 0.00 0.00 2.57
4860 5082 6.511929 CGACTGAGATTTAGCGAGACTGATTA 60.512 42.308 0.00 0.00 0.00 1.75
4861 5083 6.500041 ACTGAGATTTAGCGAGACTGATTAC 58.500 40.000 0.00 0.00 0.00 1.89
4862 5084 6.320164 ACTGAGATTTAGCGAGACTGATTACT 59.680 38.462 0.00 0.00 0.00 2.24
4933 5156 1.133790 CTTGCTTGGCCAGTAGAATGC 59.866 52.381 5.11 3.98 0.00 3.56
4952 5175 3.945346 TGCGTATTCTTTAGGAAAGGCA 58.055 40.909 0.00 0.00 39.01 4.75
5166 6371 7.750229 TGAAGTTCTCTTGAAATATTGCTGT 57.250 32.000 4.17 0.00 33.64 4.40
5269 6479 3.441101 AGATCAAGTACTACCAGTGCCA 58.559 45.455 0.00 0.00 30.68 4.92
5273 6483 1.558233 AGTACTACCAGTGCCAGGAC 58.442 55.000 0.00 0.00 30.68 3.85
5303 6513 7.222161 ACAAGAACTAAGTTGTAAGGGTTAGG 58.778 38.462 0.00 0.00 35.10 2.69
5356 6566 2.507339 TTCCTTGGAAAAGCAAAGCG 57.493 45.000 0.00 0.00 0.00 4.68
5538 6748 8.950210 CCTCAGAAATATGCGGATAAATATGTT 58.050 33.333 0.00 0.00 0.00 2.71
5590 6832 0.319727 CGGCAGGATCTGAGAGATGC 60.320 60.000 7.54 7.54 42.55 3.91
5635 6877 8.263950 CACTACCGAACACATTATATTTGTACG 58.736 37.037 0.00 0.00 0.00 3.67
5707 6949 8.690884 CAAGAAGTAGGATCATCACTCTTTAGA 58.309 37.037 0.00 0.00 0.00 2.10
5781 7027 2.704725 TGCGCAGACAATTTTCTTCC 57.295 45.000 5.66 0.00 0.00 3.46
5797 7043 3.510459 TCTTCCTGAGATGTGGTCTTCA 58.490 45.455 0.00 0.00 37.29 3.02
5838 7084 6.136071 CGCATTACTGTCAATATAGGTTTGC 58.864 40.000 0.00 0.00 0.00 3.68
6012 7302 2.774234 AGGGCTTTATGCAAGAGAGCTA 59.226 45.455 12.44 0.00 45.15 3.32
6170 7460 6.377146 GGCCAGGTCTGTTATTTTATCAAGAA 59.623 38.462 0.00 0.00 0.00 2.52
6178 7468 9.214957 TCTGTTATTTTATCAAGAACGTCACAT 57.785 29.630 0.00 0.00 0.00 3.21
6196 7486 6.750501 CGTCACATTTCTTATTTCTCCTCGTA 59.249 38.462 0.00 0.00 0.00 3.43
6217 7507 7.889469 TCGTATCATACTAACTTATTGGACCC 58.111 38.462 0.00 0.00 0.00 4.46
6233 7523 2.945668 GGACCCATCATTGTTACAGCTC 59.054 50.000 0.00 0.00 0.00 4.09
6251 7541 7.976135 ACAGCTCCTTCATGTATCAAATATC 57.024 36.000 0.00 0.00 0.00 1.63
6341 7631 6.297582 TGGCTTCAATTTTCCACATCAAATT 58.702 32.000 0.00 0.00 33.70 1.82
6531 7827 2.655474 CCTTTTCGACAACGTCTACGAG 59.345 50.000 9.86 4.02 43.02 4.18
6538 7834 2.657372 GACAACGTCTACGAGCAAGAAG 59.343 50.000 9.86 0.00 43.02 2.85
6657 7957 5.294306 GTCTCAAGATTAAATGATGGCACGA 59.706 40.000 0.00 0.00 0.00 4.35
6661 7961 3.879295 AGATTAAATGATGGCACGACTGG 59.121 43.478 0.00 0.00 0.00 4.00
6763 8063 2.082629 TTTCAGACTCTGCCGTCGCA 62.083 55.000 0.62 0.00 44.78 5.10
6827 8127 0.723459 CGTCGTTGTGTCGATCGTCA 60.723 55.000 15.94 13.37 41.78 4.35
6835 8135 1.944024 GTGTCGATCGTCAGGAGATCT 59.056 52.381 15.28 0.00 41.59 2.75
7039 8340 0.106719 CACACCTGGTCTGGTTTGGT 60.107 55.000 0.00 0.00 38.45 3.67
7040 8341 0.182775 ACACCTGGTCTGGTTTGGTC 59.817 55.000 0.00 0.00 38.45 4.02
7041 8342 0.474184 CACCTGGTCTGGTTTGGTCT 59.526 55.000 0.00 0.00 38.45 3.85
7042 8343 0.474184 ACCTGGTCTGGTTTGGTCTG 59.526 55.000 0.00 0.00 36.89 3.51
7043 8344 0.250901 CCTGGTCTGGTTTGGTCTGG 60.251 60.000 0.00 0.00 0.00 3.86
7048 8349 1.416401 GTCTGGTTTGGTCTGGTCTGA 59.584 52.381 0.00 0.00 0.00 3.27
7226 8528 4.387862 CGTCAAGTTGTTACTGGTACATCC 59.612 45.833 2.11 0.00 38.20 3.51
7227 8529 4.694037 GTCAAGTTGTTACTGGTACATCCC 59.306 45.833 2.11 0.00 38.20 3.85
7272 8574 0.670546 AATTGGTCAGACACTCGCCG 60.671 55.000 2.17 0.00 0.00 6.46
7291 8593 0.179124 GACTCCTCTAGGCACTTGCG 60.179 60.000 0.00 0.00 43.26 4.85
7378 8680 1.804748 CAGGTAAAGCGAACCCTTGTC 59.195 52.381 2.04 0.00 37.77 3.18
7380 8682 0.794473 GTAAAGCGAACCCTTGTCGG 59.206 55.000 0.00 0.00 0.00 4.79
7381 8683 0.952010 TAAAGCGAACCCTTGTCGGC 60.952 55.000 0.00 0.00 0.00 5.54
7405 8707 1.378514 CATAGTGGGTGTGGTGGCC 60.379 63.158 0.00 0.00 0.00 5.36
7419 8721 2.580322 TGGTGGCCAATCTCCTAAATCA 59.420 45.455 7.24 0.00 0.00 2.57
7457 8759 8.478877 AGGTTGTTGTATCCTTCTATTAGTGAG 58.521 37.037 0.00 0.00 0.00 3.51
7487 8789 7.337942 ACACCTTTTCCATGATGAATCTAGTTC 59.662 37.037 0.00 0.00 37.35 3.01
7490 8792 9.270640 CCTTTTCCATGATGAATCTAGTTCTAG 57.729 37.037 0.00 0.83 37.72 2.43
7608 8912 7.764141 ATATGCAACAGCATTTATACCATCA 57.236 32.000 8.36 0.00 46.36 3.07
7613 8917 7.492020 TGCAACAGCATTTATACCATCAAATTC 59.508 33.333 0.00 0.00 32.31 2.17
7614 8918 7.492020 GCAACAGCATTTATACCATCAAATTCA 59.508 33.333 0.00 0.00 0.00 2.57
7643 8947 8.099364 CTGAAAGAGGTTTTCAGTGCTATAAA 57.901 34.615 17.27 0.00 46.17 1.40
7646 8950 9.914131 GAAAGAGGTTTTCAGTGCTATAAATTT 57.086 29.630 0.00 0.00 0.00 1.82
7726 9032 9.696917 AAATATTGTACTCAAAGAAAAAGGCAG 57.303 29.630 0.00 0.00 37.11 4.85
7730 9036 6.061441 TGTACTCAAAGAAAAAGGCAGATGA 58.939 36.000 0.00 0.00 0.00 2.92
7736 9042 6.980397 TCAAAGAAAAAGGCAGATGAAAGTTC 59.020 34.615 0.00 0.00 0.00 3.01
7753 9059 8.827177 TGAAAGTTCTTCGACAAGTATTACAT 57.173 30.769 0.00 0.00 0.00 2.29
7761 9067 5.667466 TCGACAAGTATTACATTCCTTCCC 58.333 41.667 0.00 0.00 0.00 3.97
7763 9069 5.125367 ACAAGTATTACATTCCTTCCCCC 57.875 43.478 0.00 0.00 0.00 5.40
7776 9082 2.165641 CCTTCCCCCAAATTAAACTCGC 59.834 50.000 0.00 0.00 0.00 5.03
7777 9083 1.842052 TCCCCCAAATTAAACTCGCC 58.158 50.000 0.00 0.00 0.00 5.54
7778 9084 1.075698 TCCCCCAAATTAAACTCGCCA 59.924 47.619 0.00 0.00 0.00 5.69
7789 9095 1.192146 AACTCGCCAGCCTCCTACAA 61.192 55.000 0.00 0.00 0.00 2.41
7799 9105 5.770162 GCCAGCCTCCTACAAAAACATATAT 59.230 40.000 0.00 0.00 0.00 0.86
7801 9107 7.447238 GCCAGCCTCCTACAAAAACATATATAA 59.553 37.037 0.00 0.00 0.00 0.98
7834 9140 5.178096 CCATAGCATGGTATGGTAATGGA 57.822 43.478 38.70 7.37 45.19 3.41
7836 9142 5.649395 CCATAGCATGGTATGGTAATGGAAG 59.351 44.000 38.70 20.48 45.19 3.46
7837 9143 3.490348 AGCATGGTATGGTAATGGAAGC 58.510 45.455 0.00 0.00 39.58 3.86
7838 9144 3.117550 AGCATGGTATGGTAATGGAAGCA 60.118 43.478 0.00 0.00 39.58 3.91
7839 9145 3.004734 GCATGGTATGGTAATGGAAGCAC 59.995 47.826 0.00 0.00 0.00 4.40
7840 9146 4.206375 CATGGTATGGTAATGGAAGCACA 58.794 43.478 0.00 0.00 0.00 4.57
7841 9147 4.308526 TGGTATGGTAATGGAAGCACAA 57.691 40.909 0.00 0.00 0.00 3.33
7842 9148 4.667573 TGGTATGGTAATGGAAGCACAAA 58.332 39.130 0.00 0.00 0.00 2.83
7843 9149 5.080337 TGGTATGGTAATGGAAGCACAAAA 58.920 37.500 0.00 0.00 0.00 2.44
7844 9150 5.540337 TGGTATGGTAATGGAAGCACAAAAA 59.460 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.303791 CGCAACAAAAAGAGGTCTACCAC 60.304 47.826 1.26 0.00 38.89 4.16
2 3 2.875933 CGCAACAAAAAGAGGTCTACCA 59.124 45.455 1.26 0.00 38.89 3.25
82 85 4.557296 CGAGCAACAAATCTCACATTTGGT 60.557 41.667 10.89 2.37 41.80 3.67
88 91 2.143122 GGTCGAGCAACAAATCTCACA 58.857 47.619 10.30 0.00 0.00 3.58
124 127 1.674817 GCTTTGCGTGGGCTCTTACTA 60.675 52.381 0.00 0.00 40.82 1.82
146 149 0.324275 GGCTATGGGCTGGGTTTTCA 60.324 55.000 0.00 0.00 41.46 2.69
147 150 1.043116 GGGCTATGGGCTGGGTTTTC 61.043 60.000 1.86 0.00 41.46 2.29
148 151 1.001631 GGGCTATGGGCTGGGTTTT 59.998 57.895 1.86 0.00 41.46 2.43
149 152 2.689813 GGGCTATGGGCTGGGTTT 59.310 61.111 1.86 0.00 41.46 3.27
150 153 3.809013 CGGGCTATGGGCTGGGTT 61.809 66.667 3.21 0.00 40.25 4.11
151 154 4.815973 TCGGGCTATGGGCTGGGT 62.816 66.667 11.68 0.00 43.56 4.51
152 155 3.252284 ATCGGGCTATGGGCTGGG 61.252 66.667 11.68 0.00 43.56 4.45
153 156 2.348998 GATCGGGCTATGGGCTGG 59.651 66.667 11.68 0.00 43.56 4.85
154 157 2.055689 TTGGATCGGGCTATGGGCTG 62.056 60.000 4.94 4.94 44.58 4.85
166 169 6.914757 GCTTCTATTTCCAGAATTTTGGATCG 59.085 38.462 17.81 7.54 46.22 3.69
172 175 5.261216 TCGGGCTTCTATTTCCAGAATTTT 58.739 37.500 0.00 0.00 34.14 1.82
176 179 3.181454 GGATCGGGCTTCTATTTCCAGAA 60.181 47.826 0.00 0.00 33.55 3.02
391 395 1.167851 AGACGGCACCATTTGACATG 58.832 50.000 0.00 0.00 28.81 3.21
425 429 5.354234 CAGTTATTACAAAGGCACTAGGTGG 59.646 44.000 0.00 0.00 38.49 4.61
430 434 6.597672 CCATGTCAGTTATTACAAAGGCACTA 59.402 38.462 0.00 0.00 38.49 2.74
459 463 3.947196 CCTATATGCAAGTGCTTCAACCA 59.053 43.478 4.69 0.00 42.66 3.67
477 481 3.049344 CCAGAGTTAAGGCCTTCCCTAT 58.951 50.000 24.49 13.38 45.62 2.57
554 558 3.753272 TCATTGTTTGCTGCTCTACCTTC 59.247 43.478 0.00 0.00 0.00 3.46
570 574 5.872963 TGGCTAATCTATCAGCATCATTGT 58.127 37.500 0.00 0.00 39.63 2.71
584 588 6.472686 AGAATACGAGAACTTGGCTAATCT 57.527 37.500 0.00 0.00 0.00 2.40
589 593 4.003648 CCAAAGAATACGAGAACTTGGCT 58.996 43.478 0.00 0.00 0.00 4.75
636 640 2.758979 ACACAAGGATAGTGAGGTACCG 59.241 50.000 6.18 0.00 40.16 4.02
709 713 4.317488 CGGTAACAAAGGCACTAGGTTTA 58.683 43.478 0.00 0.00 38.49 2.01
714 718 2.000447 GAGCGGTAACAAAGGCACTAG 59.000 52.381 0.00 0.00 38.49 2.57
715 719 1.345089 TGAGCGGTAACAAAGGCACTA 59.655 47.619 0.00 0.00 38.49 2.74
789 797 5.071250 TCCTTTAGACAGACAAAGGCACTAA 59.929 40.000 7.99 0.00 46.92 2.24
823 831 9.577222 TTTATTTTAGGCACAGTAAGTAGGTTT 57.423 29.630 0.00 0.00 0.00 3.27
826 834 9.391006 TCATTTATTTTAGGCACAGTAAGTAGG 57.609 33.333 0.00 0.00 0.00 3.18
831 839 8.580720 TGCTTTCATTTATTTTAGGCACAGTAA 58.419 29.630 0.00 0.00 0.00 2.24
847 855 2.635443 CGGGGCCGTGCTTTCATTT 61.635 57.895 0.00 0.00 34.35 2.32
896 904 4.301628 CTTTCCATTGCTTGAACCAAGAC 58.698 43.478 10.55 3.29 43.42 3.01
946 988 3.627237 GGGAGAGAGAGAGGAGTTGATGT 60.627 52.174 0.00 0.00 0.00 3.06
949 991 2.241176 GAGGGAGAGAGAGAGGAGTTGA 59.759 54.545 0.00 0.00 0.00 3.18
950 992 2.242196 AGAGGGAGAGAGAGAGGAGTTG 59.758 54.545 0.00 0.00 0.00 3.16
951 993 2.509964 GAGAGGGAGAGAGAGAGGAGTT 59.490 54.545 0.00 0.00 0.00 3.01
952 994 2.127708 GAGAGGGAGAGAGAGAGGAGT 58.872 57.143 0.00 0.00 0.00 3.85
953 995 2.412591 AGAGAGGGAGAGAGAGAGGAG 58.587 57.143 0.00 0.00 0.00 3.69
954 996 2.587060 AGAGAGGGAGAGAGAGAGGA 57.413 55.000 0.00 0.00 0.00 3.71
955 997 2.372172 GGTAGAGAGGGAGAGAGAGAGG 59.628 59.091 0.00 0.00 0.00 3.69
956 998 3.318313 AGGTAGAGAGGGAGAGAGAGAG 58.682 54.545 0.00 0.00 0.00 3.20
957 999 3.051341 AGAGGTAGAGAGGGAGAGAGAGA 60.051 52.174 0.00 0.00 0.00 3.10
958 1000 3.318313 AGAGGTAGAGAGGGAGAGAGAG 58.682 54.545 0.00 0.00 0.00 3.20
985 1027 2.580815 CATGGCTCAGCTCACCGA 59.419 61.111 0.00 0.00 0.00 4.69
1471 1554 2.355363 TCCGCTTCAACACCGACG 60.355 61.111 0.00 0.00 0.00 5.12
1498 1581 1.139095 GACCGTCCTTCCACTAGCG 59.861 63.158 0.00 0.00 0.00 4.26
1580 1663 1.668101 CCCGCCTCTACAGTCTCACC 61.668 65.000 0.00 0.00 0.00 4.02
1608 1691 2.505364 ATCCTCCAAACCAGCAGGCC 62.505 60.000 0.00 0.00 39.06 5.19
1627 1710 4.193893 CCCCCATCCGCATCTGCA 62.194 66.667 2.72 0.00 42.21 4.41
1645 1728 2.509561 GAGCCTTCCGACGAAGCC 60.510 66.667 0.00 0.00 43.66 4.35
1665 1748 2.359107 CTGCATCCACGCCAGTGT 60.359 61.111 0.00 0.00 46.56 3.55
1747 1845 0.670546 ATTCAGCACACGGAGGAACG 60.671 55.000 0.00 0.00 40.31 3.95
1794 1900 8.583296 TGAGAATGATGAGAACACTATCTATGG 58.417 37.037 0.00 0.00 0.00 2.74
1795 1901 9.628746 CTGAGAATGATGAGAACACTATCTATG 57.371 37.037 0.00 0.00 0.00 2.23
1811 1919 4.822685 ACAGAGCAAGACTGAGAATGAT 57.177 40.909 0.00 0.00 38.55 2.45
1812 1920 4.564041 GAACAGAGCAAGACTGAGAATGA 58.436 43.478 0.00 0.00 38.55 2.57
1829 1938 0.729116 GGTGCATCCACATCGAACAG 59.271 55.000 0.00 0.00 43.88 3.16
1886 1995 5.705441 TCAGTCTTTTTACGGCTGATGAAAT 59.295 36.000 0.00 0.00 32.09 2.17
1892 2001 5.305585 AGAAATCAGTCTTTTTACGGCTGA 58.694 37.500 0.00 0.00 39.98 4.26
1893 2002 5.613358 AGAAATCAGTCTTTTTACGGCTG 57.387 39.130 0.00 0.00 0.00 4.85
1908 2017 3.946606 TGCAGCATCTCTGAAGAAATCA 58.053 40.909 0.00 0.00 45.72 2.57
1909 2018 4.959596 TTGCAGCATCTCTGAAGAAATC 57.040 40.909 0.00 0.00 45.72 2.17
1910 2019 5.717078 TTTTGCAGCATCTCTGAAGAAAT 57.283 34.783 0.00 0.00 45.72 2.17
1911 2020 5.163530 TGTTTTTGCAGCATCTCTGAAGAAA 60.164 36.000 0.00 0.00 45.72 2.52
1912 2021 4.338964 TGTTTTTGCAGCATCTCTGAAGAA 59.661 37.500 0.00 0.00 45.72 2.52
1913 2022 3.884693 TGTTTTTGCAGCATCTCTGAAGA 59.115 39.130 0.00 0.00 45.72 2.87
1914 2023 4.227538 CTGTTTTTGCAGCATCTCTGAAG 58.772 43.478 0.00 0.00 45.72 3.02
1999 2114 0.330604 ACTACCGTAGCAGGGTCTGA 59.669 55.000 5.42 0.00 37.56 3.27
2026 2141 2.051334 TCTGTTTGGGGTGTGTTCAG 57.949 50.000 0.00 0.00 0.00 3.02
2063 2178 7.607991 ACAGAAAACCAGGAGTATATTCAACAG 59.392 37.037 0.00 0.00 0.00 3.16
2121 2236 4.635324 AGGTTACGGTTTGTTCGAGAAAAA 59.365 37.500 0.00 0.00 0.00 1.94
2129 2244 7.488792 ACAAACATAAAAGGTTACGGTTTGTTC 59.511 33.333 17.08 0.00 46.25 3.18
2138 2253 8.391859 CCCACAAAAACAAACATAAAAGGTTAC 58.608 33.333 0.00 0.00 0.00 2.50
2141 2256 6.712276 TCCCACAAAAACAAACATAAAAGGT 58.288 32.000 0.00 0.00 0.00 3.50
2154 2269 5.063312 CACAACAACTGATTCCCACAAAAAC 59.937 40.000 0.00 0.00 0.00 2.43
2177 2292 1.453745 GATGGGGAAAGCGATGGCA 60.454 57.895 1.50 0.00 43.41 4.92
2200 2315 5.515797 AATCAAGCATGATCCAGAACATG 57.484 39.130 4.66 12.19 45.60 3.21
2254 2369 0.378962 CAACTAGACGAGGAGCGAGG 59.621 60.000 0.00 0.00 44.57 4.63
2270 2385 7.558444 TGTGGTCCCTAAAAATATATGGTCAAC 59.442 37.037 0.00 0.00 0.00 3.18
2331 2449 4.298332 CAATAATGCGATGGGCCTTAAAC 58.702 43.478 4.53 0.00 42.61 2.01
2535 2675 6.480524 TGTTGATTTCATAGAAAGACGGTG 57.519 37.500 0.00 0.00 0.00 4.94
2538 2678 8.115491 TCGTATGTTGATTTCATAGAAAGACG 57.885 34.615 0.00 0.00 0.00 4.18
2577 2717 4.142315 GGTGTATGCATGCTTCACTTCATT 60.142 41.667 26.09 4.47 0.00 2.57
2587 2727 3.359033 AGTTTCATGGTGTATGCATGCT 58.641 40.909 20.33 7.07 36.70 3.79
2591 2731 4.517952 CCAAAGTTTCATGGTGTATGCA 57.482 40.909 0.00 0.00 36.70 3.96
2726 2866 0.034337 TCACTTCAACTGGTACCGGC 59.966 55.000 21.25 0.00 0.00 6.13
2729 2869 2.778299 TGCATCACTTCAACTGGTACC 58.222 47.619 4.43 4.43 0.00 3.34
2791 2931 4.522789 TCTTGCTCAAAAGGTATTTCCACC 59.477 41.667 0.00 0.00 39.02 4.61
2941 3082 1.243902 TTCCCGATTCACCTTGTTGC 58.756 50.000 0.00 0.00 0.00 4.17
2952 3093 4.714632 TCTGAAGTGTTCTTTTCCCGATT 58.285 39.130 0.00 0.00 33.64 3.34
3043 3184 7.567250 TGGAAAAGATGATACTGACCACCTATA 59.433 37.037 0.00 0.00 0.00 1.31
3056 3204 9.875691 CAGACGGATTATATGGAAAAGATGATA 57.124 33.333 0.00 0.00 0.00 2.15
3141 3289 5.376854 AACATTTGGTTACAGAGATGCAC 57.623 39.130 0.00 0.00 38.15 4.57
3182 3335 7.193377 TCCGGTAAGATTGTGTTAAAAGTTC 57.807 36.000 0.00 0.00 0.00 3.01
3283 3436 2.256391 CAAGATTGCAGCACCCGAA 58.744 52.632 0.00 0.00 0.00 4.30
3313 3466 4.020485 AGACGCAGGACAGTTATTACCTTT 60.020 41.667 0.00 0.00 0.00 3.11
3342 3495 5.803967 GTGAAATTGCTTCTGCCATTTAGAG 59.196 40.000 0.00 0.00 42.26 2.43
3462 3615 5.044030 AGACTTGGGTATCCTGAAGAGTAGA 60.044 44.000 0.00 0.00 0.00 2.59
3483 3636 7.008278 GCTACTTTAAAAGTTACTGCGAAGAC 58.992 38.462 0.00 0.00 42.81 3.01
3487 3640 5.754406 TGTGCTACTTTAAAAGTTACTGCGA 59.246 36.000 0.00 0.00 42.81 5.10
3488 3641 5.981174 TGTGCTACTTTAAAAGTTACTGCG 58.019 37.500 0.00 0.00 42.81 5.18
3534 3687 6.318648 GTGTAGGCAGATCAATATGTTTCCAA 59.681 38.462 0.00 0.00 0.00 3.53
3535 3688 5.822519 GTGTAGGCAGATCAATATGTTTCCA 59.177 40.000 0.00 0.00 0.00 3.53
3659 3875 7.574607 AGTATTAACCCAGTTATTTCCTCCAG 58.425 38.462 0.00 0.00 0.00 3.86
3755 3971 1.081892 GACTGCCAGTGTACTGCATG 58.918 55.000 0.00 0.00 42.47 4.06
3879 4095 4.051237 GCACACCCAGAAATTTTGAGAAC 58.949 43.478 0.00 0.00 0.00 3.01
4152 4368 9.533253 ACTACAGAATCAAAACCAAAGAAAATG 57.467 29.630 0.00 0.00 0.00 2.32
4230 4446 9.905713 TTAAGATTTAAGACTAGCATCACCAAT 57.094 29.630 0.00 0.00 0.00 3.16
4271 4487 2.312390 GGGGTAACAAACTGCCTTTGA 58.688 47.619 10.18 0.00 41.81 2.69
4300 4516 4.225942 AGGTCAAGAGTGCCTGATATTTCA 59.774 41.667 0.00 0.00 32.20 2.69
4433 4649 4.337274 TGGATTGAGCATGCAAGAATACTG 59.663 41.667 21.98 0.00 28.41 2.74
4536 4756 5.965922 AGGAATGTTGCTAAAGTTAATGGC 58.034 37.500 0.00 0.00 0.00 4.40
4578 4798 0.391395 TGTACGTTTGTATGGCCCCG 60.391 55.000 0.00 0.00 32.11 5.73
4719 4940 6.364165 CCTGCTGACATGAAACATTTAAAGTG 59.636 38.462 0.00 0.00 0.00 3.16
4724 4945 3.825585 TGCCTGCTGACATGAAACATTTA 59.174 39.130 0.00 0.00 0.00 1.40
4725 4946 2.629137 TGCCTGCTGACATGAAACATTT 59.371 40.909 0.00 0.00 0.00 2.32
4730 4951 1.985473 ACTTGCCTGCTGACATGAAA 58.015 45.000 0.00 0.00 0.00 2.69
4789 5011 9.212641 CCAGTCGATGTTATATTCATGAGATTT 57.787 33.333 0.00 0.00 0.00 2.17
4790 5012 7.821359 CCCAGTCGATGTTATATTCATGAGATT 59.179 37.037 0.00 0.00 0.00 2.40
4791 5013 7.179160 TCCCAGTCGATGTTATATTCATGAGAT 59.821 37.037 0.00 0.00 0.00 2.75
4792 5014 6.493458 TCCCAGTCGATGTTATATTCATGAGA 59.507 38.462 0.00 0.00 0.00 3.27
4793 5015 6.587990 GTCCCAGTCGATGTTATATTCATGAG 59.412 42.308 0.00 0.00 0.00 2.90
4794 5016 6.041523 TGTCCCAGTCGATGTTATATTCATGA 59.958 38.462 0.00 0.00 0.00 3.07
4795 5017 6.223120 TGTCCCAGTCGATGTTATATTCATG 58.777 40.000 0.00 0.00 0.00 3.07
4796 5018 6.419484 TGTCCCAGTCGATGTTATATTCAT 57.581 37.500 0.00 0.00 0.00 2.57
4797 5019 5.862678 TGTCCCAGTCGATGTTATATTCA 57.137 39.130 0.00 0.00 0.00 2.57
4798 5020 7.061905 CGTTATGTCCCAGTCGATGTTATATTC 59.938 40.741 0.00 0.00 0.00 1.75
4799 5021 6.866770 CGTTATGTCCCAGTCGATGTTATATT 59.133 38.462 0.00 0.00 0.00 1.28
4800 5022 6.208007 TCGTTATGTCCCAGTCGATGTTATAT 59.792 38.462 0.00 0.00 0.00 0.86
4801 5023 5.532032 TCGTTATGTCCCAGTCGATGTTATA 59.468 40.000 0.00 0.00 0.00 0.98
4802 5024 4.340097 TCGTTATGTCCCAGTCGATGTTAT 59.660 41.667 0.00 0.00 0.00 1.89
4803 5025 3.695556 TCGTTATGTCCCAGTCGATGTTA 59.304 43.478 0.00 0.00 0.00 2.41
4804 5026 2.494471 TCGTTATGTCCCAGTCGATGTT 59.506 45.455 0.00 0.00 0.00 2.71
4805 5027 2.097036 TCGTTATGTCCCAGTCGATGT 58.903 47.619 0.00 0.00 0.00 3.06
4806 5028 2.863401 TCGTTATGTCCCAGTCGATG 57.137 50.000 0.00 0.00 0.00 3.84
4807 5029 2.758979 ACTTCGTTATGTCCCAGTCGAT 59.241 45.455 0.00 0.00 0.00 3.59
4808 5030 2.165167 ACTTCGTTATGTCCCAGTCGA 58.835 47.619 0.00 0.00 0.00 4.20
4809 5031 2.649331 ACTTCGTTATGTCCCAGTCG 57.351 50.000 0.00 0.00 0.00 4.18
4810 5032 4.312443 TGAAACTTCGTTATGTCCCAGTC 58.688 43.478 0.00 0.00 0.00 3.51
4811 5033 4.202326 ACTGAAACTTCGTTATGTCCCAGT 60.202 41.667 0.00 0.00 0.00 4.00
4812 5034 4.315803 ACTGAAACTTCGTTATGTCCCAG 58.684 43.478 0.00 0.00 0.00 4.45
4813 5035 4.312443 GACTGAAACTTCGTTATGTCCCA 58.688 43.478 0.00 0.00 0.00 4.37
4814 5036 3.367025 CGACTGAAACTTCGTTATGTCCC 59.633 47.826 0.00 0.00 0.00 4.46
4815 5037 4.089636 GTCGACTGAAACTTCGTTATGTCC 59.910 45.833 8.70 0.00 36.60 4.02
4816 5038 4.916249 AGTCGACTGAAACTTCGTTATGTC 59.084 41.667 19.30 0.00 36.60 3.06
4817 5039 4.680110 CAGTCGACTGAAACTTCGTTATGT 59.320 41.667 36.73 0.00 46.59 2.29
4818 5040 5.178660 CAGTCGACTGAAACTTCGTTATG 57.821 43.478 36.73 8.45 46.59 1.90
4831 5053 3.064134 TCTCGCTAAATCTCAGTCGACTG 59.936 47.826 34.76 34.76 45.08 3.51
4832 5054 3.064271 GTCTCGCTAAATCTCAGTCGACT 59.936 47.826 13.58 13.58 0.00 4.18
4833 5055 3.064271 AGTCTCGCTAAATCTCAGTCGAC 59.936 47.826 7.70 7.70 0.00 4.20
4834 5056 3.064134 CAGTCTCGCTAAATCTCAGTCGA 59.936 47.826 0.00 0.00 0.00 4.20
4835 5057 3.064134 TCAGTCTCGCTAAATCTCAGTCG 59.936 47.826 0.00 0.00 0.00 4.18
4836 5058 4.624336 TCAGTCTCGCTAAATCTCAGTC 57.376 45.455 0.00 0.00 0.00 3.51
4837 5059 5.590530 AATCAGTCTCGCTAAATCTCAGT 57.409 39.130 0.00 0.00 0.00 3.41
4838 5060 6.734137 AGTAATCAGTCTCGCTAAATCTCAG 58.266 40.000 0.00 0.00 0.00 3.35
4839 5061 6.701145 AGTAATCAGTCTCGCTAAATCTCA 57.299 37.500 0.00 0.00 0.00 3.27
4840 5062 7.995463 AAAGTAATCAGTCTCGCTAAATCTC 57.005 36.000 0.00 0.00 0.00 2.75
4841 5063 8.688151 ACTAAAGTAATCAGTCTCGCTAAATCT 58.312 33.333 0.00 0.00 0.00 2.40
4842 5064 8.859517 ACTAAAGTAATCAGTCTCGCTAAATC 57.140 34.615 0.00 0.00 0.00 2.17
4845 5067 9.565213 GTTTACTAAAGTAATCAGTCTCGCTAA 57.435 33.333 3.52 0.00 39.89 3.09
4846 5068 8.186821 GGTTTACTAAAGTAATCAGTCTCGCTA 58.813 37.037 3.52 0.00 39.89 4.26
4847 5069 7.034397 GGTTTACTAAAGTAATCAGTCTCGCT 58.966 38.462 3.52 0.00 39.89 4.93
4848 5070 6.810182 TGGTTTACTAAAGTAATCAGTCTCGC 59.190 38.462 3.52 0.00 39.89 5.03
4849 5071 8.808529 CATGGTTTACTAAAGTAATCAGTCTCG 58.191 37.037 3.52 0.00 39.89 4.04
4850 5072 8.604890 GCATGGTTTACTAAAGTAATCAGTCTC 58.395 37.037 3.52 0.00 39.89 3.36
4851 5073 8.322091 AGCATGGTTTACTAAAGTAATCAGTCT 58.678 33.333 3.52 4.89 39.89 3.24
4852 5074 8.494016 AGCATGGTTTACTAAAGTAATCAGTC 57.506 34.615 3.52 3.22 39.89 3.51
4853 5075 7.553044 GGAGCATGGTTTACTAAAGTAATCAGT 59.447 37.037 0.00 0.00 39.89 3.41
4854 5076 7.552687 TGGAGCATGGTTTACTAAAGTAATCAG 59.447 37.037 0.00 0.26 39.89 2.90
4855 5077 7.398829 TGGAGCATGGTTTACTAAAGTAATCA 58.601 34.615 0.00 6.25 39.89 2.57
4856 5078 7.859325 TGGAGCATGGTTTACTAAAGTAATC 57.141 36.000 0.00 3.44 39.89 1.75
4857 5079 8.275040 AGATGGAGCATGGTTTACTAAAGTAAT 58.725 33.333 0.00 0.00 39.89 1.89
4858 5080 7.630082 AGATGGAGCATGGTTTACTAAAGTAA 58.370 34.615 0.00 0.00 38.60 2.24
4859 5081 7.125811 AGAGATGGAGCATGGTTTACTAAAGTA 59.874 37.037 0.00 0.00 0.00 2.24
4860 5082 6.067217 AGATGGAGCATGGTTTACTAAAGT 57.933 37.500 0.00 0.00 0.00 2.66
4861 5083 6.352516 AGAGATGGAGCATGGTTTACTAAAG 58.647 40.000 0.00 0.00 0.00 1.85
4862 5084 6.313519 AGAGATGGAGCATGGTTTACTAAA 57.686 37.500 0.00 0.00 0.00 1.85
4933 5156 7.306632 CGATAGTTGCCTTTCCTAAAGAATACG 60.307 40.741 0.99 0.00 41.02 3.06
4943 5166 5.300752 CACATATCGATAGTTGCCTTTCCT 58.699 41.667 11.41 0.00 37.40 3.36
4944 5167 4.452455 CCACATATCGATAGTTGCCTTTCC 59.548 45.833 11.41 0.00 37.40 3.13
4950 5173 3.678056 TCCCCACATATCGATAGTTGC 57.322 47.619 11.41 0.00 37.40 4.17
4952 5175 6.659824 ACTTTTTCCCCACATATCGATAGTT 58.340 36.000 11.41 0.00 37.40 2.24
5166 6371 9.378551 CACTAAATTGTCATAAGTACCTGCTTA 57.621 33.333 0.00 0.00 35.68 3.09
5269 6479 5.221461 ACAACTTAGTTCTTGTCATCGTCCT 60.221 40.000 0.00 0.00 0.00 3.85
5273 6483 6.090898 CCCTTACAACTTAGTTCTTGTCATCG 59.909 42.308 0.00 0.00 32.77 3.84
5303 6513 0.528924 TGCAGCTCAATGGTCATTGC 59.471 50.000 16.40 7.90 45.77 3.56
5356 6566 4.330074 GTCTATAGTTGGTGCACATGTCAC 59.670 45.833 20.43 15.77 0.00 3.67
5538 6748 8.087750 ACTTTTTCTGTTTCAACTTGTCAATCA 58.912 29.630 0.00 0.00 0.00 2.57
5590 6832 7.345192 GGTAGTGCACATCTTAAATCAATACG 58.655 38.462 21.04 0.00 0.00 3.06
5635 6877 2.287977 AAACCTTTGGCTGGGAGTAC 57.712 50.000 0.00 0.00 0.00 2.73
5781 7027 4.533919 AGTCTTGAAGACCACATCTCAG 57.466 45.455 20.81 0.00 46.18 3.35
5797 7043 1.071699 TGCGCCCTAACTTGAAGTCTT 59.928 47.619 4.18 0.00 0.00 3.01
5880 7162 4.688879 CACATTTGCTAGACGTCAGGTAAA 59.311 41.667 19.50 19.44 0.00 2.01
5881 7163 4.242475 CACATTTGCTAGACGTCAGGTAA 58.758 43.478 19.50 12.19 0.00 2.85
5930 7220 1.306148 CACTGTGGCATGCCTATGAG 58.694 55.000 35.53 25.34 36.36 2.90
6170 7460 5.577164 CGAGGAGAAATAAGAAATGTGACGT 59.423 40.000 0.00 0.00 0.00 4.34
6196 7486 8.275187 TGATGGGTCCAATAAGTTAGTATGAT 57.725 34.615 0.00 0.00 0.00 2.45
6201 7491 6.731467 ACAATGATGGGTCCAATAAGTTAGT 58.269 36.000 0.00 0.00 0.00 2.24
6202 7492 7.645058 AACAATGATGGGTCCAATAAGTTAG 57.355 36.000 0.00 0.00 0.00 2.34
6203 7493 8.110271 TGTAACAATGATGGGTCCAATAAGTTA 58.890 33.333 0.00 0.00 0.00 2.24
6204 7494 6.951198 TGTAACAATGATGGGTCCAATAAGTT 59.049 34.615 0.00 0.00 0.00 2.66
6217 7507 5.356190 ACATGAAGGAGCTGTAACAATGATG 59.644 40.000 0.00 0.00 0.00 3.07
6233 7523 7.382110 AGTCTCCGATATTTGATACATGAAGG 58.618 38.462 0.00 0.00 0.00 3.46
6251 7541 1.215647 CAGAAACCCCGAGTCTCCG 59.784 63.158 0.00 0.00 0.00 4.63
6513 7809 1.002576 TGCTCGTAGACGTTGTCGAAA 60.003 47.619 1.46 0.00 40.80 3.46
6531 7827 3.446570 ATGGCTGCCGCTTCTTGC 61.447 61.111 14.98 0.00 36.09 4.01
6538 7834 3.344215 CGAGATCATGGCTGCCGC 61.344 66.667 14.98 0.75 0.00 6.53
6618 7914 3.095912 TGAGACCGAGATTCAGGGTAA 57.904 47.619 0.00 0.00 33.28 2.85
6657 7957 1.683917 CCTGCGAGTAGAATAGCCAGT 59.316 52.381 0.00 0.00 0.00 4.00
6661 7961 3.366883 CCATCTCCTGCGAGTAGAATAGC 60.367 52.174 0.00 0.00 37.40 2.97
6763 8063 1.553704 CTGAAACCTAGGTAACCCGCT 59.446 52.381 16.67 0.00 35.12 5.52
7039 8340 2.743553 TGCTCATCAGATCAGACCAGA 58.256 47.619 0.00 0.00 0.00 3.86
7040 8341 3.459145 CTTGCTCATCAGATCAGACCAG 58.541 50.000 0.00 0.00 0.00 4.00
7041 8342 2.169978 CCTTGCTCATCAGATCAGACCA 59.830 50.000 0.00 0.00 0.00 4.02
7042 8343 2.836262 CCTTGCTCATCAGATCAGACC 58.164 52.381 0.00 0.00 0.00 3.85
7043 8344 2.211806 GCCTTGCTCATCAGATCAGAC 58.788 52.381 0.00 0.00 0.00 3.51
7048 8349 0.393402 TTGCGCCTTGCTCATCAGAT 60.393 50.000 4.18 0.00 46.63 2.90
7199 8501 1.263217 CCAGTAACAACTTGACGCCAC 59.737 52.381 0.00 0.00 0.00 5.01
7226 8528 1.812571 GGCTACAATTGACAGTGTGGG 59.187 52.381 13.59 0.00 32.24 4.61
7227 8529 1.812571 GGGCTACAATTGACAGTGTGG 59.187 52.381 13.59 3.08 32.24 4.17
7272 8574 0.179124 CGCAAGTGCCTAGAGGAGTC 60.179 60.000 0.00 0.00 37.91 3.36
7291 8593 0.396060 CTAGGGCTGCTTCTCCATCC 59.604 60.000 0.00 0.00 0.00 3.51
7367 8669 3.411351 CACGCCGACAAGGGTTCG 61.411 66.667 0.00 0.00 41.48 3.95
7370 8672 4.309950 GACCACGCCGACAAGGGT 62.310 66.667 0.00 0.00 41.48 4.34
7378 8680 2.202878 CCCACTATGACCACGCCG 60.203 66.667 0.00 0.00 0.00 6.46
7380 8682 1.019278 CACACCCACTATGACCACGC 61.019 60.000 0.00 0.00 0.00 5.34
7381 8683 0.391130 CCACACCCACTATGACCACG 60.391 60.000 0.00 0.00 0.00 4.94
7405 8707 6.816640 TCGGTTTACACTGATTTAGGAGATTG 59.183 38.462 0.00 0.00 32.93 2.67
7419 8721 3.613030 ACAACAACCTTCGGTTTACACT 58.387 40.909 0.00 0.00 44.33 3.55
7457 8759 6.774656 AGATTCATCATGGAAAAGGTGTATCC 59.225 38.462 0.00 0.00 0.00 2.59
7716 9020 5.626955 CGAAGAACTTTCATCTGCCTTTTTC 59.373 40.000 0.00 0.00 0.00 2.29
7726 9032 8.922676 TGTAATACTTGTCGAAGAACTTTCATC 58.077 33.333 0.00 0.00 39.69 2.92
7730 9036 8.718734 GGAATGTAATACTTGTCGAAGAACTTT 58.281 33.333 0.00 0.00 39.69 2.66
7736 9042 6.258068 GGGAAGGAATGTAATACTTGTCGAAG 59.742 42.308 0.00 0.00 35.07 3.79
7753 9059 4.083565 CGAGTTTAATTTGGGGGAAGGAA 58.916 43.478 0.00 0.00 0.00 3.36
7761 9067 1.135112 GGCTGGCGAGTTTAATTTGGG 60.135 52.381 0.00 0.00 0.00 4.12
7763 9069 2.159379 GGAGGCTGGCGAGTTTAATTTG 60.159 50.000 0.00 0.00 0.00 2.32
7776 9082 8.918202 TTATATATGTTTTTGTAGGAGGCTGG 57.082 34.615 0.00 0.00 0.00 4.85
7778 9084 9.350951 GGTTTATATATGTTTTTGTAGGAGGCT 57.649 33.333 0.00 0.00 0.00 4.58
7789 9095 7.122715 TGGGCACTCTGGTTTATATATGTTTT 58.877 34.615 0.00 0.00 0.00 2.43
7799 9105 2.710096 GCTATGGGCACTCTGGTTTA 57.290 50.000 0.00 0.00 41.35 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.