Multiple sequence alignment - TraesCS1D01G377500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G377500 chr1D 100.000 2138 0 0 1 2138 453572670 453574807 0.000000e+00 3949.0
1 TraesCS1D01G377500 chr1D 79.930 1141 119 42 629 1744 453554854 453555909 0.000000e+00 737.0
2 TraesCS1D01G377500 chr1D 88.889 324 23 5 1818 2138 453555909 453556222 9.250000e-104 387.0
3 TraesCS1D01G377500 chr1D 87.349 332 29 8 1818 2138 453563684 453564013 3.350000e-98 368.0
4 TraesCS1D01G377500 chr1D 86.508 126 14 2 1005 1127 453288039 453288164 3.700000e-28 135.0
5 TraesCS1D01G377500 chr1A 93.723 1641 64 8 516 2138 548454027 548455646 0.000000e+00 2423.0
6 TraesCS1D01G377500 chr1A 80.370 866 89 33 629 1453 548445184 548446009 1.100000e-162 582.0
7 TraesCS1D01G377500 chr1A 85.758 330 28 8 1818 2138 548446274 548446593 4.400000e-87 331.0
8 TraesCS1D01G377500 chr1A 84.639 332 27 9 1818 2138 548447986 548448304 2.060000e-80 309.0
9 TraesCS1D01G377500 chr1A 78.400 250 31 17 887 1127 547949797 547950032 7.950000e-30 141.0
10 TraesCS1D01G377500 chr1A 87.671 73 6 2 862 934 548441701 548441770 4.890000e-12 82.4
11 TraesCS1D01G377500 chr1B 91.535 1642 86 19 517 2136 624018623 624020233 0.000000e+00 2213.0
12 TraesCS1D01G377500 chr1B 84.418 507 54 14 948 1436 623990647 623991146 1.920000e-130 475.0
13 TraesCS1D01G377500 chr1B 90.654 321 20 4 1818 2138 623991377 623991687 3.280000e-113 418.0
14 TraesCS1D01G377500 chr1B 88.379 327 30 5 1818 2138 623996600 623996924 9.250000e-104 387.0
15 TraesCS1D01G377500 chr1B 88.612 281 25 5 1818 2095 623993096 623993372 3.400000e-88 335.0
16 TraesCS1D01G377500 chr1B 89.944 179 15 3 96 273 501336872 501337048 5.940000e-56 228.0
17 TraesCS1D01G377500 chr1B 85.926 135 15 3 994 1127 623762338 623762469 7.950000e-30 141.0
18 TraesCS1D01G377500 chr1B 80.000 180 18 10 35 204 600606136 600606307 1.340000e-22 117.0
19 TraesCS1D01G377500 chr3A 77.577 718 85 48 783 1449 34583493 34582801 4.340000e-97 364.0
20 TraesCS1D01G377500 chr3A 88.500 200 17 6 30 226 724481034 724481230 9.860000e-59 237.0
21 TraesCS1D01G377500 chr3A 76.102 590 61 49 797 1347 34593489 34592941 3.550000e-58 235.0
22 TraesCS1D01G377500 chr3A 89.385 179 16 3 96 273 395753346 395753170 2.760000e-54 222.0
23 TraesCS1D01G377500 chr3A 89.385 179 16 3 96 273 676063017 676062841 2.760000e-54 222.0
24 TraesCS1D01G377500 chr7B 82.103 447 51 16 96 519 393863328 393863768 2.610000e-94 355.0
25 TraesCS1D01G377500 chr7B 89.385 179 16 3 96 273 340657628 340657804 2.760000e-54 222.0
26 TraesCS1D01G377500 chrUn 82.086 441 53 14 96 515 41473100 41473535 9.390000e-94 353.0
27 TraesCS1D01G377500 chrUn 89.385 179 16 3 96 273 255360340 255360516 2.760000e-54 222.0
28 TraesCS1D01G377500 chr5B 82.167 443 50 15 96 515 242429669 242429233 9.390000e-94 353.0
29 TraesCS1D01G377500 chr4A 81.406 441 55 14 96 515 563232598 563233032 3.400000e-88 335.0
30 TraesCS1D01G377500 chr4A 87.838 148 18 0 368 515 427499579 427499726 7.840000e-40 174.0
31 TraesCS1D01G377500 chr3B 76.773 719 85 53 783 1449 42707571 42706883 5.690000e-86 327.0
32 TraesCS1D01G377500 chr3B 80.409 342 36 17 899 1216 42701223 42700889 4.590000e-57 231.0
33 TraesCS1D01G377500 chr3B 79.772 351 36 22 1001 1326 42714677 42714337 2.760000e-54 222.0
34 TraesCS1D01G377500 chr3B 82.877 146 17 5 1588 1727 42689687 42689544 8.010000e-25 124.0
35 TraesCS1D01G377500 chr3B 80.142 141 21 5 1264 1399 42689924 42689786 4.860000e-17 99.0
36 TraesCS1D01G377500 chr6B 80.876 434 56 17 96 515 574466533 574466953 1.230000e-82 316.0
37 TraesCS1D01G377500 chr6B 80.787 432 55 18 99 515 690884871 690884453 1.590000e-81 313.0
38 TraesCS1D01G377500 chr3D 78.893 488 61 26 899 1347 25190581 25190097 2.080000e-75 292.0
39 TraesCS1D01G377500 chr3D 83.838 99 10 3 1267 1364 25150939 25150846 2.920000e-14 89.8
40 TraesCS1D01G377500 chr4B 86.441 236 21 5 288 515 672007111 672006879 4.560000e-62 248.0
41 TraesCS1D01G377500 chr4B 84.322 236 26 5 288 515 672027740 672027508 9.930000e-54 220.0
42 TraesCS1D01G377500 chr2B 89.944 179 15 3 96 273 628456702 628456526 5.940000e-56 228.0
43 TraesCS1D01G377500 chr2B 85.909 220 21 9 36 252 110769381 110769169 2.130000e-55 226.0
44 TraesCS1D01G377500 chr2A 89.944 179 15 3 96 273 535828840 535829016 5.940000e-56 228.0
45 TraesCS1D01G377500 chr6A 85.973 221 19 4 303 515 234168980 234168764 2.130000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G377500 chr1D 453572670 453574807 2137 False 3949.00 3949 100.00000 1 2138 1 chr1D.!!$F3 2137
1 TraesCS1D01G377500 chr1D 453554854 453556222 1368 False 562.00 737 84.40950 629 2138 2 chr1D.!!$F4 1509
2 TraesCS1D01G377500 chr1A 548454027 548455646 1619 False 2423.00 2423 93.72300 516 2138 1 chr1A.!!$F2 1622
3 TraesCS1D01G377500 chr1A 548441701 548448304 6603 False 326.10 582 84.60950 629 2138 4 chr1A.!!$F3 1509
4 TraesCS1D01G377500 chr1B 624018623 624020233 1610 False 2213.00 2213 91.53500 517 2136 1 chr1B.!!$F4 1619
5 TraesCS1D01G377500 chr1B 623990647 623996924 6277 False 403.75 475 88.01575 948 2138 4 chr1B.!!$F5 1190
6 TraesCS1D01G377500 chr3A 34582801 34583493 692 True 364.00 364 77.57700 783 1449 1 chr3A.!!$R1 666
7 TraesCS1D01G377500 chr3A 34592941 34593489 548 True 235.00 235 76.10200 797 1347 1 chr3A.!!$R2 550
8 TraesCS1D01G377500 chr3B 42706883 42707571 688 True 327.00 327 76.77300 783 1449 1 chr3B.!!$R2 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 405 0.033109 GGGGGTCAGGGAGATTTTGG 60.033 60.0 0.0 0.0 0.0 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 4670 0.959372 ATGCAGACTGCTCTTGCCAC 60.959 55.0 26.94 0.0 45.31 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.298122 AGTCACAGACATTTATTAAAGTTGCG 58.702 34.615 0.00 0.00 34.60 4.85
53 54 7.172532 AGTCACAGACATTTATTAAAGTTGCGA 59.827 33.333 0.00 0.00 34.60 5.10
54 55 7.801315 GTCACAGACATTTATTAAAGTTGCGAA 59.199 33.333 0.00 0.00 32.09 4.70
55 56 8.511321 TCACAGACATTTATTAAAGTTGCGAAT 58.489 29.630 0.00 0.00 0.00 3.34
71 72 8.776376 AGTTGCGAATATTTTTCCAAATTCAT 57.224 26.923 0.00 0.00 34.29 2.57
72 73 9.868277 AGTTGCGAATATTTTTCCAAATTCATA 57.132 25.926 0.00 0.00 34.29 2.15
74 75 9.868277 TTGCGAATATTTTTCCAAATTCATAGT 57.132 25.926 0.00 0.00 34.29 2.12
75 76 9.868277 TGCGAATATTTTTCCAAATTCATAGTT 57.132 25.926 0.00 0.00 34.29 2.24
82 83 8.568732 TTTTTCCAAATTCATAGTTCACGAAC 57.431 30.769 1.54 1.54 41.45 3.95
83 84 6.869315 TTCCAAATTCATAGTTCACGAACA 57.131 33.333 12.21 0.00 43.47 3.18
85 86 8.554835 TTCCAAATTCATAGTTCACGAACATA 57.445 30.769 12.21 2.92 43.47 2.29
86 87 8.731275 TCCAAATTCATAGTTCACGAACATAT 57.269 30.769 12.21 4.86 43.47 1.78
87 88 9.173021 TCCAAATTCATAGTTCACGAACATATT 57.827 29.630 12.21 2.21 43.47 1.28
88 89 9.787532 CCAAATTCATAGTTCACGAACATATTT 57.212 29.630 12.21 7.10 43.47 1.40
97 98 8.928844 AGTTCACGAACATATTTTTAAAGTCG 57.071 30.769 12.21 0.00 43.47 4.18
99 100 6.010675 TCACGAACATATTTTTAAAGTCGCG 58.989 36.000 0.00 0.00 0.00 5.87
100 101 6.010675 CACGAACATATTTTTAAAGTCGCGA 58.989 36.000 3.71 3.71 0.00 5.87
101 102 6.517034 CACGAACATATTTTTAAAGTCGCGAA 59.483 34.615 12.06 0.00 0.00 4.70
102 103 6.517374 ACGAACATATTTTTAAAGTCGCGAAC 59.483 34.615 12.06 5.35 0.00 3.95
103 104 6.517034 CGAACATATTTTTAAAGTCGCGAACA 59.483 34.615 12.06 0.00 0.00 3.18
104 105 7.215568 CGAACATATTTTTAAAGTCGCGAACAT 59.784 33.333 12.06 1.56 0.00 2.71
105 106 8.736751 AACATATTTTTAAAGTCGCGAACATT 57.263 26.923 12.06 9.03 0.00 2.71
106 107 8.736751 ACATATTTTTAAAGTCGCGAACATTT 57.263 26.923 12.06 14.95 0.00 2.32
115 116 9.881529 TTAAAGTCGCGAACATTTTATTAAAGT 57.118 25.926 12.06 0.00 0.00 2.66
116 117 8.431020 AAAGTCGCGAACATTTTATTAAAGTC 57.569 30.769 12.06 0.00 0.00 3.01
118 119 7.013529 AGTCGCGAACATTTTATTAAAGTCAC 58.986 34.615 12.06 0.00 0.00 3.67
119 120 6.010675 TCGCGAACATTTTATTAAAGTCACG 58.989 36.000 6.20 0.00 0.00 4.35
120 121 6.010675 CGCGAACATTTTATTAAAGTCACGA 58.989 36.000 0.00 0.00 0.00 4.35
123 124 9.480538 GCGAACATTTTATTAAAGTCACGAATA 57.519 29.630 0.00 0.00 0.00 1.75
138 139 9.927668 AAGTCACGAATATTTTTCCAAATTCAT 57.072 25.926 0.00 0.00 34.29 2.57
139 140 9.573133 AGTCACGAATATTTTTCCAAATTCATC 57.427 29.630 0.00 0.00 34.29 2.92
145 146 9.853921 GAATATTTTTCCAAATTCATCATTCGC 57.146 29.630 0.00 0.00 34.29 4.70
147 148 7.670009 ATTTTTCCAAATTCATCATTCGCAA 57.330 28.000 0.00 0.00 0.00 4.85
148 149 7.488187 TTTTTCCAAATTCATCATTCGCAAA 57.512 28.000 0.00 0.00 0.00 3.68
149 150 6.464895 TTTCCAAATTCATCATTCGCAAAC 57.535 33.333 0.00 0.00 0.00 2.93
150 151 5.131594 TCCAAATTCATCATTCGCAAACA 57.868 34.783 0.00 0.00 0.00 2.83
151 152 5.722263 TCCAAATTCATCATTCGCAAACAT 58.278 33.333 0.00 0.00 0.00 2.71
152 153 6.164876 TCCAAATTCATCATTCGCAAACATT 58.835 32.000 0.00 0.00 0.00 2.71
153 154 6.649973 TCCAAATTCATCATTCGCAAACATTT 59.350 30.769 0.00 0.00 0.00 2.32
155 156 7.804129 CCAAATTCATCATTCGCAAACATTTTT 59.196 29.630 0.00 0.00 0.00 1.94
210 211 7.181143 TCGTTAGCGAACATTTTTCTAAAGT 57.819 32.000 10.41 0.00 44.92 2.66
211 212 7.285788 TCGTTAGCGAACATTTTTCTAAAGTC 58.714 34.615 10.41 0.00 44.92 3.01
212 213 6.243649 CGTTAGCGAACATTTTTCTAAAGTCG 59.756 38.462 10.41 0.00 41.33 4.18
213 214 4.464112 AGCGAACATTTTTCTAAAGTCGC 58.536 39.130 6.61 6.61 44.15 5.19
214 215 3.294627 GCGAACATTTTTCTAAAGTCGCG 59.705 43.478 0.00 0.00 39.71 5.87
215 216 4.694177 CGAACATTTTTCTAAAGTCGCGA 58.306 39.130 3.71 3.71 0.00 5.87
216 217 5.134640 CGAACATTTTTCTAAAGTCGCGAA 58.865 37.500 12.06 0.00 0.00 4.70
218 219 6.951530 CGAACATTTTTCTAAAGTCGCGAATA 59.048 34.615 12.06 3.67 0.00 1.75
219 220 7.634817 CGAACATTTTTCTAAAGTCGCGAATAT 59.365 33.333 12.06 1.56 0.00 1.28
221 222 9.620660 AACATTTTTCTAAAGTCGCGAATATTT 57.379 25.926 12.06 14.95 0.00 1.40
243 244 3.906014 TTTCCAAATTCATCGTTCGCA 57.094 38.095 0.00 0.00 0.00 5.10
246 247 4.433186 TCCAAATTCATCGTTCGCAAAT 57.567 36.364 0.00 0.00 0.00 2.32
247 248 5.553290 TCCAAATTCATCGTTCGCAAATA 57.447 34.783 0.00 0.00 0.00 1.40
248 249 6.130298 TCCAAATTCATCGTTCGCAAATAT 57.870 33.333 0.00 0.00 0.00 1.28
250 251 7.032580 TCCAAATTCATCGTTCGCAAATATTT 58.967 30.769 0.00 0.00 0.00 1.40
251 252 7.543868 TCCAAATTCATCGTTCGCAAATATTTT 59.456 29.630 0.00 0.00 0.00 1.82
255 256 7.491254 TTCATCGTTCGCAAATATTTTTCTG 57.509 32.000 0.00 0.00 0.00 3.02
256 257 6.836953 TCATCGTTCGCAAATATTTTTCTGA 58.163 32.000 0.00 0.00 0.00 3.27
257 258 7.301789 TCATCGTTCGCAAATATTTTTCTGAA 58.698 30.769 0.00 0.00 0.00 3.02
258 259 7.967854 TCATCGTTCGCAAATATTTTTCTGAAT 59.032 29.630 0.00 0.00 0.00 2.57
259 260 8.586273 CATCGTTCGCAAATATTTTTCTGAATT 58.414 29.630 0.00 0.00 0.00 2.17
260 261 9.781834 ATCGTTCGCAAATATTTTTCTGAATTA 57.218 25.926 0.00 0.00 0.00 1.40
261 262 9.613957 TCGTTCGCAAATATTTTTCTGAATTAA 57.386 25.926 0.00 0.00 0.00 1.40
290 291 6.864685 ACATTTTTACTGTTCATCATGCACTG 59.135 34.615 0.00 0.00 0.00 3.66
291 292 6.389830 TTTTTACTGTTCATCATGCACTGT 57.610 33.333 5.37 5.37 31.77 3.55
292 293 6.389830 TTTTACTGTTCATCATGCACTGTT 57.610 33.333 5.34 0.00 29.99 3.16
294 295 7.503521 TTTACTGTTCATCATGCACTGTTTA 57.496 32.000 5.34 0.00 29.99 2.01
296 297 6.187125 ACTGTTCATCATGCACTGTTTATC 57.813 37.500 0.00 0.00 0.00 1.75
298 299 3.950087 TCATCATGCACTGTTTATCGC 57.050 42.857 0.00 0.00 0.00 4.58
302 303 2.159531 TCATGCACTGTTTATCGCTTGC 60.160 45.455 0.00 0.00 31.60 4.01
303 304 1.233919 TGCACTGTTTATCGCTTGCA 58.766 45.000 0.00 0.00 37.63 4.08
304 305 1.197492 TGCACTGTTTATCGCTTGCAG 59.803 47.619 0.00 0.00 35.13 4.41
305 306 1.464608 GCACTGTTTATCGCTTGCAGA 59.535 47.619 0.00 0.00 0.00 4.26
306 307 2.095768 GCACTGTTTATCGCTTGCAGAA 60.096 45.455 0.00 0.00 0.00 3.02
307 308 3.609175 GCACTGTTTATCGCTTGCAGAAA 60.609 43.478 0.00 0.00 0.00 2.52
309 310 4.556135 CACTGTTTATCGCTTGCAGAAATG 59.444 41.667 0.00 0.00 0.00 2.32
310 311 4.455533 ACTGTTTATCGCTTGCAGAAATGA 59.544 37.500 0.00 0.00 0.00 2.57
311 312 5.124457 ACTGTTTATCGCTTGCAGAAATGAT 59.876 36.000 0.00 0.00 0.00 2.45
312 313 5.334319 TGTTTATCGCTTGCAGAAATGATG 58.666 37.500 0.00 0.00 0.00 3.07
313 314 5.106197 TGTTTATCGCTTGCAGAAATGATGT 60.106 36.000 0.00 0.00 0.00 3.06
314 315 5.565592 TTATCGCTTGCAGAAATGATGTT 57.434 34.783 0.00 0.00 0.00 2.71
316 317 2.159667 TCGCTTGCAGAAATGATGTTCG 60.160 45.455 0.00 0.00 32.50 3.95
317 318 2.523015 GCTTGCAGAAATGATGTTCGG 58.477 47.619 0.00 0.00 32.50 4.30
318 319 2.162208 GCTTGCAGAAATGATGTTCGGA 59.838 45.455 0.00 0.00 32.50 4.55
319 320 3.366273 GCTTGCAGAAATGATGTTCGGAA 60.366 43.478 0.00 0.00 32.50 4.30
321 322 3.411446 TGCAGAAATGATGTTCGGAACT 58.589 40.909 20.53 7.38 32.50 3.01
322 323 3.189080 TGCAGAAATGATGTTCGGAACTG 59.811 43.478 20.53 9.67 32.50 3.16
323 324 3.436704 GCAGAAATGATGTTCGGAACTGA 59.563 43.478 20.53 3.01 32.50 3.41
325 326 5.385617 CAGAAATGATGTTCGGAACTGAAC 58.614 41.667 20.53 16.64 46.63 3.18
333 334 4.400036 GTTCGGAACTGAACGCTATTTT 57.600 40.909 13.49 0.00 38.91 1.82
336 337 4.813027 TCGGAACTGAACGCTATTTTACT 58.187 39.130 0.00 0.00 0.00 2.24
337 338 4.624024 TCGGAACTGAACGCTATTTTACTG 59.376 41.667 0.00 0.00 0.00 2.74
338 339 4.387862 CGGAACTGAACGCTATTTTACTGT 59.612 41.667 0.00 0.00 0.00 3.55
339 340 5.107220 CGGAACTGAACGCTATTTTACTGTT 60.107 40.000 0.00 0.00 0.00 3.16
340 341 6.304882 GGAACTGAACGCTATTTTACTGTTC 58.695 40.000 0.00 0.00 39.40 3.18
341 342 6.073440 GGAACTGAACGCTATTTTACTGTTCA 60.073 38.462 1.25 6.02 44.61 3.18
342 343 6.224420 ACTGAACGCTATTTTACTGTTCAC 57.776 37.500 2.26 0.00 42.68 3.18
343 344 5.107607 ACTGAACGCTATTTTACTGTTCACG 60.108 40.000 2.26 2.82 42.68 4.35
344 345 4.150980 TGAACGCTATTTTACTGTTCACGG 59.849 41.667 2.26 0.00 42.68 4.94
345 346 3.656559 ACGCTATTTTACTGTTCACGGT 58.343 40.909 0.00 0.00 39.18 4.83
346 347 4.060205 ACGCTATTTTACTGTTCACGGTT 58.940 39.130 0.00 0.00 36.70 4.44
348 349 4.150980 CGCTATTTTACTGTTCACGGTTCA 59.849 41.667 0.00 0.00 36.70 3.18
350 351 6.608610 GCTATTTTACTGTTCACGGTTCAAT 58.391 36.000 0.00 0.00 36.70 2.57
353 354 5.821516 TTTACTGTTCACGGTTCAATGTT 57.178 34.783 0.00 0.00 36.70 2.71
354 355 3.963383 ACTGTTCACGGTTCAATGTTC 57.037 42.857 0.00 0.00 29.59 3.18
356 357 3.064820 ACTGTTCACGGTTCAATGTTCAC 59.935 43.478 0.00 0.00 29.59 3.18
359 360 2.281517 TCACGGTTCAATGTTCACGTT 58.718 42.857 0.00 0.00 31.61 3.99
361 362 3.869832 TCACGGTTCAATGTTCACGTTTA 59.130 39.130 0.00 0.00 31.61 2.01
362 363 4.331992 TCACGGTTCAATGTTCACGTTTAA 59.668 37.500 0.00 0.00 31.61 1.52
363 364 4.435231 CACGGTTCAATGTTCACGTTTAAC 59.565 41.667 4.01 4.01 31.58 2.01
373 374 3.419759 CGTTTAACGCCGCCAGCT 61.420 61.111 4.11 0.00 40.39 4.24
375 376 3.053291 TTTAACGCCGCCAGCTGG 61.053 61.111 29.34 29.34 40.39 4.85
385 386 2.187946 CCAGCTGGCCGGTTAGAG 59.812 66.667 22.33 0.00 0.00 2.43
386 387 2.187946 CAGCTGGCCGGTTAGAGG 59.812 66.667 14.55 0.00 0.00 3.69
387 388 3.083997 AGCTGGCCGGTTAGAGGG 61.084 66.667 14.55 0.00 0.00 4.30
389 390 3.480133 CTGGCCGGTTAGAGGGGG 61.480 72.222 2.29 0.00 0.00 5.40
391 392 3.477346 GGCCGGTTAGAGGGGGTC 61.477 72.222 1.90 0.00 0.00 4.46
392 393 2.686106 GCCGGTTAGAGGGGGTCA 60.686 66.667 1.90 0.00 0.00 4.02
393 394 2.732619 GCCGGTTAGAGGGGGTCAG 61.733 68.421 1.90 0.00 0.00 3.51
394 395 2.064581 CCGGTTAGAGGGGGTCAGG 61.065 68.421 0.00 0.00 0.00 3.86
395 396 2.064581 CGGTTAGAGGGGGTCAGGG 61.065 68.421 0.00 0.00 0.00 4.45
396 397 1.394963 GGTTAGAGGGGGTCAGGGA 59.605 63.158 0.00 0.00 0.00 4.20
397 398 0.691413 GGTTAGAGGGGGTCAGGGAG 60.691 65.000 0.00 0.00 0.00 4.30
398 399 0.338814 GTTAGAGGGGGTCAGGGAGA 59.661 60.000 0.00 0.00 0.00 3.71
399 400 1.062044 GTTAGAGGGGGTCAGGGAGAT 60.062 57.143 0.00 0.00 0.00 2.75
400 401 1.330155 TAGAGGGGGTCAGGGAGATT 58.670 55.000 0.00 0.00 0.00 2.40
401 402 0.423544 AGAGGGGGTCAGGGAGATTT 59.576 55.000 0.00 0.00 0.00 2.17
402 403 1.203622 AGAGGGGGTCAGGGAGATTTT 60.204 52.381 0.00 0.00 0.00 1.82
403 404 1.002857 AGGGGGTCAGGGAGATTTTG 58.997 55.000 0.00 0.00 0.00 2.44
404 405 0.033109 GGGGGTCAGGGAGATTTTGG 60.033 60.000 0.00 0.00 0.00 3.28
405 406 0.999712 GGGGTCAGGGAGATTTTGGA 59.000 55.000 0.00 0.00 0.00 3.53
406 407 1.341089 GGGGTCAGGGAGATTTTGGAC 60.341 57.143 0.00 0.00 0.00 4.02
407 408 1.341089 GGGTCAGGGAGATTTTGGACC 60.341 57.143 0.00 0.00 43.10 4.46
413 414 3.973425 AGGGAGATTTTGGACCTGAATG 58.027 45.455 0.00 0.00 0.00 2.67
414 415 3.593328 AGGGAGATTTTGGACCTGAATGA 59.407 43.478 0.00 0.00 0.00 2.57
415 416 3.696548 GGGAGATTTTGGACCTGAATGAC 59.303 47.826 0.00 0.00 0.00 3.06
416 417 4.335416 GGAGATTTTGGACCTGAATGACA 58.665 43.478 0.00 0.00 0.00 3.58
417 418 4.156739 GGAGATTTTGGACCTGAATGACAC 59.843 45.833 0.00 0.00 0.00 3.67
418 419 4.728772 AGATTTTGGACCTGAATGACACA 58.271 39.130 0.00 0.00 0.00 3.72
419 420 4.520492 AGATTTTGGACCTGAATGACACAC 59.480 41.667 0.00 0.00 0.00 3.82
421 422 3.576078 TTGGACCTGAATGACACACTT 57.424 42.857 0.00 0.00 0.00 3.16
422 423 4.698201 TTGGACCTGAATGACACACTTA 57.302 40.909 0.00 0.00 0.00 2.24
423 424 4.002906 TGGACCTGAATGACACACTTAC 57.997 45.455 0.00 0.00 0.00 2.34
425 426 3.997021 GGACCTGAATGACACACTTACTG 59.003 47.826 0.00 0.00 0.00 2.74
426 427 3.403038 ACCTGAATGACACACTTACTGC 58.597 45.455 0.00 0.00 0.00 4.40
427 428 3.181455 ACCTGAATGACACACTTACTGCA 60.181 43.478 0.00 0.00 0.00 4.41
428 429 3.187227 CCTGAATGACACACTTACTGCAC 59.813 47.826 0.00 0.00 0.00 4.57
430 431 4.450976 TGAATGACACACTTACTGCACTT 58.549 39.130 0.00 0.00 0.00 3.16
431 432 4.511454 TGAATGACACACTTACTGCACTTC 59.489 41.667 0.00 0.00 0.00 3.01
432 433 3.535280 TGACACACTTACTGCACTTCA 57.465 42.857 0.00 0.00 0.00 3.02
433 434 3.867857 TGACACACTTACTGCACTTCAA 58.132 40.909 0.00 0.00 0.00 2.69
436 437 4.708177 ACACACTTACTGCACTTCAAGAT 58.292 39.130 0.00 0.00 0.00 2.40
437 438 5.126067 ACACACTTACTGCACTTCAAGATT 58.874 37.500 0.00 0.00 0.00 2.40
438 439 5.237344 ACACACTTACTGCACTTCAAGATTC 59.763 40.000 0.00 0.00 0.00 2.52
440 441 5.468072 ACACTTACTGCACTTCAAGATTCTG 59.532 40.000 0.00 0.00 0.00 3.02
442 443 3.777106 ACTGCACTTCAAGATTCTGGA 57.223 42.857 0.00 0.00 0.00 3.86
443 444 4.298103 ACTGCACTTCAAGATTCTGGAT 57.702 40.909 0.00 0.00 0.00 3.41
444 445 4.008330 ACTGCACTTCAAGATTCTGGATG 58.992 43.478 0.00 3.05 0.00 3.51
445 446 4.259356 CTGCACTTCAAGATTCTGGATGA 58.741 43.478 10.19 0.00 0.00 2.92
446 447 4.005650 TGCACTTCAAGATTCTGGATGAC 58.994 43.478 10.19 3.86 0.00 3.06
447 448 3.063180 GCACTTCAAGATTCTGGATGACG 59.937 47.826 10.19 1.06 0.00 4.35
448 449 4.498241 CACTTCAAGATTCTGGATGACGA 58.502 43.478 10.19 0.00 0.00 4.20
449 450 5.114780 CACTTCAAGATTCTGGATGACGAT 58.885 41.667 10.19 0.00 0.00 3.73
450 451 5.583854 CACTTCAAGATTCTGGATGACGATT 59.416 40.000 10.19 0.00 0.00 3.34
454 455 6.172630 TCAAGATTCTGGATGACGATTTTCA 58.827 36.000 0.00 0.00 0.00 2.69
456 457 7.986889 TCAAGATTCTGGATGACGATTTTCATA 59.013 33.333 0.00 0.00 36.30 2.15
457 458 7.959689 AGATTCTGGATGACGATTTTCATAG 57.040 36.000 0.00 0.00 36.30 2.23
459 460 7.989741 AGATTCTGGATGACGATTTTCATAGTT 59.010 33.333 0.00 0.00 36.30 2.24
460 461 7.539712 TTCTGGATGACGATTTTCATAGTTC 57.460 36.000 0.00 0.00 36.30 3.01
461 462 5.748630 TCTGGATGACGATTTTCATAGTTCG 59.251 40.000 0.00 0.00 36.30 3.95
462 463 5.656480 TGGATGACGATTTTCATAGTTCGA 58.344 37.500 0.00 0.00 36.30 3.71
463 464 5.748630 TGGATGACGATTTTCATAGTTCGAG 59.251 40.000 0.00 0.00 36.30 4.04
467 468 5.575606 TGACGATTTTCATAGTTCGAGAACC 59.424 40.000 11.87 0.00 42.06 3.62
469 470 6.860080 ACGATTTTCATAGTTCGAGAACCTA 58.140 36.000 11.87 5.32 42.06 3.08
470 471 6.750963 ACGATTTTCATAGTTCGAGAACCTAC 59.249 38.462 11.87 0.00 42.06 3.18
471 472 6.075519 CGATTTTCATAGTTCGAGAACCTACG 60.076 42.308 11.87 0.00 42.06 3.51
472 473 5.633830 TTTCATAGTTCGAGAACCTACGT 57.366 39.130 11.87 0.00 42.06 3.57
475 476 2.985406 AGTTCGAGAACCTACGTGAC 57.015 50.000 11.87 0.00 42.06 3.67
477 478 2.031333 AGTTCGAGAACCTACGTGACAC 60.031 50.000 11.87 0.00 42.06 3.67
478 479 0.877071 TCGAGAACCTACGTGACACC 59.123 55.000 0.00 0.00 0.00 4.16
479 480 0.109412 CGAGAACCTACGTGACACCC 60.109 60.000 0.00 0.00 0.00 4.61
481 482 1.549170 GAGAACCTACGTGACACCCAT 59.451 52.381 0.00 0.00 0.00 4.00
482 483 2.756760 GAGAACCTACGTGACACCCATA 59.243 50.000 0.00 0.00 0.00 2.74
483 484 3.167485 AGAACCTACGTGACACCCATAA 58.833 45.455 0.00 0.00 0.00 1.90
484 485 3.579586 AGAACCTACGTGACACCCATAAA 59.420 43.478 0.00 0.00 0.00 1.40
487 488 5.680594 ACCTACGTGACACCCATAAAATA 57.319 39.130 0.00 0.00 0.00 1.40
488 489 5.667466 ACCTACGTGACACCCATAAAATAG 58.333 41.667 0.00 0.00 0.00 1.73
489 490 5.188359 ACCTACGTGACACCCATAAAATAGT 59.812 40.000 0.00 0.00 0.00 2.12
490 491 6.110707 CCTACGTGACACCCATAAAATAGTT 58.889 40.000 0.00 0.00 0.00 2.24
491 492 6.596497 CCTACGTGACACCCATAAAATAGTTT 59.404 38.462 0.00 0.00 0.00 2.66
494 495 6.148811 ACGTGACACCCATAAAATAGTTTGAG 59.851 38.462 0.00 0.00 0.00 3.02
495 496 6.403200 CGTGACACCCATAAAATAGTTTGAGG 60.403 42.308 0.00 0.18 0.00 3.86
496 497 6.657541 GTGACACCCATAAAATAGTTTGAGGA 59.342 38.462 9.04 0.00 0.00 3.71
497 498 6.657541 TGACACCCATAAAATAGTTTGAGGAC 59.342 38.462 9.04 2.24 0.00 3.85
498 499 5.949952 ACACCCATAAAATAGTTTGAGGACC 59.050 40.000 9.04 0.00 0.00 4.46
499 500 6.187682 CACCCATAAAATAGTTTGAGGACCT 58.812 40.000 0.00 0.00 0.00 3.85
500 501 7.037153 ACACCCATAAAATAGTTTGAGGACCTA 60.037 37.037 0.00 0.00 0.00 3.08
501 502 7.282450 CACCCATAAAATAGTTTGAGGACCTAC 59.718 40.741 0.00 0.00 0.00 3.18
504 505 8.047310 CCATAAAATAGTTTGAGGACCTACAGT 58.953 37.037 0.00 0.00 0.00 3.55
505 506 8.883731 CATAAAATAGTTTGAGGACCTACAGTG 58.116 37.037 0.00 0.00 0.00 3.66
506 507 2.841442 AGTTTGAGGACCTACAGTGC 57.159 50.000 0.00 0.00 37.00 4.40
507 508 2.047061 AGTTTGAGGACCTACAGTGCA 58.953 47.619 0.00 0.00 39.79 4.57
508 509 2.143925 GTTTGAGGACCTACAGTGCAC 58.856 52.381 9.40 9.40 39.79 4.57
510 511 1.717032 TGAGGACCTACAGTGCACTT 58.283 50.000 18.94 11.49 39.79 3.16
511 512 1.618837 TGAGGACCTACAGTGCACTTC 59.381 52.381 18.94 11.95 39.79 3.01
512 513 1.618837 GAGGACCTACAGTGCACTTCA 59.381 52.381 18.94 6.81 39.79 3.02
589 590 8.815912 AGTAAAATTTCCTGATGCTAAATGGTT 58.184 29.630 0.00 0.00 0.00 3.67
601 602 8.474025 TGATGCTAAATGGTTTAATCGGAAAAT 58.526 29.630 0.00 0.00 0.00 1.82
604 605 7.547370 TGCTAAATGGTTTAATCGGAAAATTGG 59.453 33.333 0.00 0.00 0.00 3.16
605 606 6.735678 AAATGGTTTAATCGGAAAATTGGC 57.264 33.333 0.00 0.00 0.00 4.52
620 621 3.060000 GGCAGCAGCAGCATCACA 61.060 61.111 12.41 0.00 45.49 3.58
621 622 2.415608 GGCAGCAGCAGCATCACAT 61.416 57.895 12.41 0.00 45.49 3.21
624 625 2.148768 GCAGCAGCAGCATCACATATA 58.851 47.619 4.63 0.00 45.49 0.86
625 626 2.747989 GCAGCAGCAGCATCACATATAT 59.252 45.455 4.63 0.00 45.49 0.86
627 628 3.751698 CAGCAGCAGCATCACATATATGT 59.248 43.478 12.75 12.75 45.49 2.29
657 3513 5.888161 CAGTATTCAGGGGCAAATTTACTCT 59.112 40.000 0.00 0.00 0.00 3.24
687 3543 1.891811 CAGCTGTCACCTTGAGAGAGA 59.108 52.381 5.25 0.00 39.87 3.10
689 3545 1.204467 GCTGTCACCTTGAGAGAGAGG 59.796 57.143 4.59 0.00 39.87 3.69
691 3547 1.148027 TGTCACCTTGAGAGAGAGGGT 59.852 52.381 0.00 0.00 37.36 4.34
692 3548 1.548269 GTCACCTTGAGAGAGAGGGTG 59.452 57.143 0.00 0.00 46.03 4.61
693 3549 0.248843 CACCTTGAGAGAGAGGGTGC 59.751 60.000 0.00 0.00 40.44 5.01
989 3907 3.394836 AGCCGCCCTCCTGTTCTC 61.395 66.667 0.00 0.00 0.00 2.87
1170 4111 0.382636 GCGTTCGGTTCTCGTTTGTG 60.383 55.000 0.00 0.00 40.32 3.33
1254 4231 4.402155 AGTTTCAGGTTGATTTTGCTGACA 59.598 37.500 0.00 0.00 0.00 3.58
1259 4236 5.592282 TCAGGTTGATTTTGCTGACAGTTAA 59.408 36.000 3.99 0.00 0.00 2.01
1272 4250 5.858581 GCTGACAGTTAATTTGGATGTTGAC 59.141 40.000 3.99 0.00 0.00 3.18
1287 4265 2.246789 GTTGACGTTTTGTGTGGTGTG 58.753 47.619 0.00 0.00 0.00 3.82
1327 4320 3.737172 AACGGCAAGGATGTGCGC 61.737 61.111 0.00 0.00 45.91 6.09
1351 4344 0.999406 CGATGTGTTAGGTCTTGGCG 59.001 55.000 0.00 0.00 0.00 5.69
1376 4369 5.686841 TCTTTGTTGTGAATTTGCTTGATCG 59.313 36.000 0.00 0.00 0.00 3.69
1549 4563 8.567104 GTGCATCCTTTGGAAATGTTTTTATTT 58.433 29.630 0.00 0.00 34.34 1.40
1604 4632 2.421424 CACACAAGGCTATCTCAAAGGC 59.579 50.000 0.00 0.00 39.70 4.35
1642 4670 2.128035 GTGGCGATATCGAGGTGAAAG 58.872 52.381 28.63 0.00 43.02 2.62
1755 4788 6.327365 TCTGAAGATACATTTCCCTGATGCTA 59.673 38.462 0.00 0.00 0.00 3.49
1766 4799 2.681848 CCCTGATGCTAACAGCTTTCTG 59.318 50.000 0.00 1.83 42.97 3.02
1798 4831 8.475639 TCAGTATTTCTGATAGTAACCTCAACC 58.524 37.037 0.00 0.00 46.77 3.77
1813 4846 6.997942 ACCTCAACCTAGAACTTAGAACTT 57.002 37.500 0.00 0.00 0.00 2.66
1928 4979 4.943705 GTCCTTGCTCATGGTTCATTCTAA 59.056 41.667 0.00 0.00 0.00 2.10
1937 4988 7.325660 TCATGGTTCATTCTAAATCAGCTTC 57.674 36.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.803189 CGCAACTTTAATAAATGTCTGTGACTT 59.197 33.333 0.00 0.00 33.15 3.01
27 28 7.172532 TCGCAACTTTAATAAATGTCTGTGACT 59.827 33.333 0.00 0.00 33.15 3.41
28 29 7.295201 TCGCAACTTTAATAAATGTCTGTGAC 58.705 34.615 0.00 0.00 0.00 3.67
29 30 7.428282 TCGCAACTTTAATAAATGTCTGTGA 57.572 32.000 0.00 0.00 0.00 3.58
30 31 8.673626 ATTCGCAACTTTAATAAATGTCTGTG 57.326 30.769 0.00 0.00 0.00 3.66
44 45 9.050601 TGAATTTGGAAAAATATTCGCAACTTT 57.949 25.926 0.00 0.00 31.29 2.66
45 46 8.600449 TGAATTTGGAAAAATATTCGCAACTT 57.400 26.923 0.00 0.00 31.29 2.66
48 49 9.868277 ACTATGAATTTGGAAAAATATTCGCAA 57.132 25.926 0.00 0.00 31.29 4.85
49 50 9.868277 AACTATGAATTTGGAAAAATATTCGCA 57.132 25.926 0.00 0.00 31.29 5.10
58 59 7.708051 TGTTCGTGAACTATGAATTTGGAAAA 58.292 30.769 13.40 0.00 41.67 2.29
59 60 7.265647 TGTTCGTGAACTATGAATTTGGAAA 57.734 32.000 13.40 0.00 41.67 3.13
60 61 6.869315 TGTTCGTGAACTATGAATTTGGAA 57.131 33.333 13.40 0.00 41.67 3.53
61 62 8.731275 ATATGTTCGTGAACTATGAATTTGGA 57.269 30.769 13.40 0.00 41.67 3.53
62 63 9.787532 AAATATGTTCGTGAACTATGAATTTGG 57.212 29.630 13.40 0.00 41.67 3.28
72 73 7.532884 GCGACTTTAAAAATATGTTCGTGAACT 59.467 33.333 13.40 2.90 41.67 3.01
74 75 6.517034 CGCGACTTTAAAAATATGTTCGTGAA 59.483 34.615 0.00 0.00 0.00 3.18
75 76 6.010675 CGCGACTTTAAAAATATGTTCGTGA 58.989 36.000 0.00 0.00 0.00 4.35
77 78 6.155691 TCGCGACTTTAAAAATATGTTCGT 57.844 33.333 3.71 0.00 0.00 3.85
78 79 6.517034 TGTTCGCGACTTTAAAAATATGTTCG 59.483 34.615 9.15 0.00 0.00 3.95
79 80 7.769719 TGTTCGCGACTTTAAAAATATGTTC 57.230 32.000 9.15 0.00 0.00 3.18
80 81 8.736751 AATGTTCGCGACTTTAAAAATATGTT 57.263 26.923 9.15 0.00 0.00 2.71
81 82 8.736751 AAATGTTCGCGACTTTAAAAATATGT 57.263 26.923 9.15 0.00 0.00 2.29
89 90 9.881529 ACTTTAATAAAATGTTCGCGACTTTAA 57.118 25.926 9.15 1.96 0.00 1.52
90 91 9.532697 GACTTTAATAAAATGTTCGCGACTTTA 57.467 29.630 9.15 10.99 0.00 1.85
91 92 8.071368 TGACTTTAATAAAATGTTCGCGACTTT 58.929 29.630 9.15 9.02 0.00 2.66
92 93 7.532884 GTGACTTTAATAAAATGTTCGCGACTT 59.467 33.333 9.15 0.00 0.00 3.01
93 94 7.013529 GTGACTTTAATAAAATGTTCGCGACT 58.986 34.615 9.15 0.00 0.00 4.18
94 95 6.023564 CGTGACTTTAATAAAATGTTCGCGAC 60.024 38.462 9.15 4.85 0.00 5.19
95 96 6.010675 CGTGACTTTAATAAAATGTTCGCGA 58.989 36.000 3.71 3.71 0.00 5.87
96 97 6.010675 TCGTGACTTTAATAAAATGTTCGCG 58.989 36.000 0.00 0.00 0.00 5.87
97 98 7.769719 TTCGTGACTTTAATAAAATGTTCGC 57.230 32.000 0.00 0.00 0.00 4.70
111 112 9.757227 TGAATTTGGAAAAATATTCGTGACTTT 57.243 25.926 0.00 0.00 31.29 2.66
112 113 9.927668 ATGAATTTGGAAAAATATTCGTGACTT 57.072 25.926 0.00 0.00 31.29 3.01
113 114 9.573133 GATGAATTTGGAAAAATATTCGTGACT 57.427 29.630 0.00 0.00 31.29 3.41
119 120 9.853921 GCGAATGATGAATTTGGAAAAATATTC 57.146 29.630 0.00 0.00 31.08 1.75
120 121 9.381033 TGCGAATGATGAATTTGGAAAAATATT 57.619 25.926 0.00 0.00 31.08 1.28
123 124 7.670009 TTGCGAATGATGAATTTGGAAAAAT 57.330 28.000 0.00 0.00 37.13 1.82
124 125 7.011763 TGTTTGCGAATGATGAATTTGGAAAAA 59.988 29.630 6.57 0.40 45.93 1.94
125 126 6.481313 TGTTTGCGAATGATGAATTTGGAAAA 59.519 30.769 6.57 0.00 45.93 2.29
126 127 5.987953 TGTTTGCGAATGATGAATTTGGAAA 59.012 32.000 0.00 2.06 43.74 3.13
127 128 5.536260 TGTTTGCGAATGATGAATTTGGAA 58.464 33.333 0.00 0.00 38.00 3.53
128 129 5.131594 TGTTTGCGAATGATGAATTTGGA 57.868 34.783 0.00 0.00 31.08 3.53
130 131 8.716619 AAAAATGTTTGCGAATGATGAATTTG 57.283 26.923 0.00 0.00 33.29 2.32
172 173 6.003234 TCGCTAACGATGAATTTGGAAAAA 57.997 33.333 0.00 0.00 45.12 1.94
173 174 5.614923 TCGCTAACGATGAATTTGGAAAA 57.385 34.783 0.00 0.00 45.12 2.29
187 188 6.243649 CGACTTTAGAAAAATGTTCGCTAACG 59.756 38.462 0.00 0.00 38.53 3.18
188 189 6.031107 GCGACTTTAGAAAAATGTTCGCTAAC 59.969 38.462 5.45 0.00 39.38 2.34
190 191 5.614760 GCGACTTTAGAAAAATGTTCGCTA 58.385 37.500 5.45 0.00 39.38 4.26
191 192 4.464112 GCGACTTTAGAAAAATGTTCGCT 58.536 39.130 5.45 0.00 39.38 4.93
193 194 4.694177 TCGCGACTTTAGAAAAATGTTCG 58.306 39.130 3.71 0.00 0.00 3.95
194 195 8.822105 ATATTCGCGACTTTAGAAAAATGTTC 57.178 30.769 9.15 0.00 0.00 3.18
196 197 9.620660 AAAATATTCGCGACTTTAGAAAAATGT 57.379 25.926 9.15 0.00 0.00 2.71
221 222 4.611943 TGCGAACGATGAATTTGGAAAAA 58.388 34.783 0.00 0.00 0.00 1.94
223 224 3.906014 TGCGAACGATGAATTTGGAAA 57.094 38.095 0.00 0.00 0.00 3.13
224 225 3.906014 TTGCGAACGATGAATTTGGAA 57.094 38.095 0.00 0.00 0.00 3.53
226 227 6.810888 AATATTTGCGAACGATGAATTTGG 57.189 33.333 0.00 0.00 0.00 3.28
228 229 9.139174 AGAAAAATATTTGCGAACGATGAATTT 57.861 25.926 0.39 0.00 0.00 1.82
230 231 7.967854 TCAGAAAAATATTTGCGAACGATGAAT 59.032 29.630 0.39 0.00 0.00 2.57
232 233 6.836953 TCAGAAAAATATTTGCGAACGATGA 58.163 32.000 0.39 0.00 0.00 2.92
234 235 8.687824 AATTCAGAAAAATATTTGCGAACGAT 57.312 26.923 0.39 0.00 0.00 3.73
235 236 9.613957 TTAATTCAGAAAAATATTTGCGAACGA 57.386 25.926 0.39 0.00 0.00 3.85
264 265 7.383029 CAGTGCATGATGAACAGTAAAAATGTT 59.617 33.333 6.29 0.00 43.38 2.71
265 266 6.864685 CAGTGCATGATGAACAGTAAAAATGT 59.135 34.615 6.29 0.00 0.00 2.71
266 267 6.864685 ACAGTGCATGATGAACAGTAAAAATG 59.135 34.615 6.29 0.00 0.00 2.32
267 268 6.985117 ACAGTGCATGATGAACAGTAAAAAT 58.015 32.000 6.29 0.00 0.00 1.82
268 269 6.389830 ACAGTGCATGATGAACAGTAAAAA 57.610 33.333 6.29 0.00 0.00 1.94
269 270 6.389830 AACAGTGCATGATGAACAGTAAAA 57.610 33.333 6.29 0.00 24.47 1.52
271 272 7.412891 CGATAAACAGTGCATGATGAACAGTAA 60.413 37.037 6.29 0.00 24.47 2.24
272 273 6.035975 CGATAAACAGTGCATGATGAACAGTA 59.964 38.462 6.29 0.00 24.47 2.74
273 274 5.163824 CGATAAACAGTGCATGATGAACAGT 60.164 40.000 6.29 0.37 25.32 3.55
274 275 5.260900 CGATAAACAGTGCATGATGAACAG 58.739 41.667 6.29 0.00 0.00 3.16
276 277 4.031028 GCGATAAACAGTGCATGATGAAC 58.969 43.478 0.00 0.00 0.00 3.18
277 278 3.940852 AGCGATAAACAGTGCATGATGAA 59.059 39.130 0.00 0.00 0.00 2.57
279 280 3.957671 AGCGATAAACAGTGCATGATG 57.042 42.857 0.00 0.00 0.00 3.07
280 281 3.488047 GCAAGCGATAAACAGTGCATGAT 60.488 43.478 0.00 0.00 32.29 2.45
282 283 2.179589 GCAAGCGATAAACAGTGCATG 58.820 47.619 0.00 0.00 32.29 4.06
283 284 1.811965 TGCAAGCGATAAACAGTGCAT 59.188 42.857 0.00 0.00 37.09 3.96
286 287 3.811722 TTCTGCAAGCGATAAACAGTG 57.188 42.857 0.00 0.00 0.00 3.66
287 288 4.455533 TCATTTCTGCAAGCGATAAACAGT 59.544 37.500 0.00 0.00 0.00 3.55
290 291 5.335127 ACATCATTTCTGCAAGCGATAAAC 58.665 37.500 0.00 0.00 0.00 2.01
291 292 5.565592 ACATCATTTCTGCAAGCGATAAA 57.434 34.783 0.00 0.00 0.00 1.40
292 293 5.565592 AACATCATTTCTGCAAGCGATAA 57.434 34.783 0.00 0.00 0.00 1.75
294 295 3.486375 CGAACATCATTTCTGCAAGCGAT 60.486 43.478 0.00 0.00 0.00 4.58
296 297 2.171567 CGAACATCATTTCTGCAAGCG 58.828 47.619 0.00 0.00 0.00 4.68
298 299 4.083110 AGTTCCGAACATCATTTCTGCAAG 60.083 41.667 13.69 0.00 0.00 4.01
302 303 5.385617 GTTCAGTTCCGAACATCATTTCTG 58.614 41.667 13.69 0.91 43.89 3.02
303 304 4.152402 CGTTCAGTTCCGAACATCATTTCT 59.848 41.667 13.69 0.00 44.54 2.52
304 305 4.394795 CGTTCAGTTCCGAACATCATTTC 58.605 43.478 13.69 0.00 44.54 2.17
305 306 3.364964 GCGTTCAGTTCCGAACATCATTT 60.365 43.478 13.69 0.00 44.54 2.32
306 307 2.159627 GCGTTCAGTTCCGAACATCATT 59.840 45.455 13.69 0.00 44.54 2.57
307 308 1.732259 GCGTTCAGTTCCGAACATCAT 59.268 47.619 13.69 0.00 44.54 2.45
309 310 1.429463 AGCGTTCAGTTCCGAACATC 58.571 50.000 13.69 0.64 44.54 3.06
310 311 2.736144 TAGCGTTCAGTTCCGAACAT 57.264 45.000 13.69 0.00 44.54 2.71
311 312 2.736144 ATAGCGTTCAGTTCCGAACA 57.264 45.000 13.69 0.00 44.54 3.18
312 313 4.400036 AAAATAGCGTTCAGTTCCGAAC 57.600 40.909 2.81 2.81 41.56 3.95
313 314 5.119588 CAGTAAAATAGCGTTCAGTTCCGAA 59.880 40.000 0.00 0.00 0.00 4.30
314 315 4.624024 CAGTAAAATAGCGTTCAGTTCCGA 59.376 41.667 0.00 0.00 0.00 4.55
316 317 5.857822 ACAGTAAAATAGCGTTCAGTTCC 57.142 39.130 0.00 0.00 0.00 3.62
317 318 6.790825 GTGAACAGTAAAATAGCGTTCAGTTC 59.209 38.462 3.67 0.00 44.67 3.01
318 319 6.563381 CGTGAACAGTAAAATAGCGTTCAGTT 60.563 38.462 3.67 0.00 44.67 3.16
319 320 5.107607 CGTGAACAGTAAAATAGCGTTCAGT 60.108 40.000 3.67 0.00 44.67 3.41
321 322 4.150980 CCGTGAACAGTAAAATAGCGTTCA 59.849 41.667 0.00 0.00 42.58 3.18
322 323 4.151157 ACCGTGAACAGTAAAATAGCGTTC 59.849 41.667 0.00 0.00 37.16 3.95
323 324 4.060205 ACCGTGAACAGTAAAATAGCGTT 58.940 39.130 0.00 0.00 0.00 4.84
325 326 4.150980 TGAACCGTGAACAGTAAAATAGCG 59.849 41.667 0.00 0.00 0.00 4.26
326 327 5.600908 TGAACCGTGAACAGTAAAATAGC 57.399 39.130 0.00 0.00 0.00 2.97
327 328 7.581476 ACATTGAACCGTGAACAGTAAAATAG 58.419 34.615 0.00 0.00 0.00 1.73
328 329 7.499321 ACATTGAACCGTGAACAGTAAAATA 57.501 32.000 0.00 0.00 0.00 1.40
330 331 5.821516 ACATTGAACCGTGAACAGTAAAA 57.178 34.783 0.00 0.00 0.00 1.52
331 332 5.354513 TGAACATTGAACCGTGAACAGTAAA 59.645 36.000 0.00 0.00 0.00 2.01
332 333 4.876679 TGAACATTGAACCGTGAACAGTAA 59.123 37.500 0.00 0.00 0.00 2.24
333 334 4.271533 GTGAACATTGAACCGTGAACAGTA 59.728 41.667 0.00 0.00 0.00 2.74
336 337 2.031068 CGTGAACATTGAACCGTGAACA 59.969 45.455 0.00 0.00 0.00 3.18
337 338 2.031191 ACGTGAACATTGAACCGTGAAC 59.969 45.455 0.00 0.00 0.00 3.18
338 339 2.281517 ACGTGAACATTGAACCGTGAA 58.718 42.857 0.00 0.00 0.00 3.18
339 340 1.942677 ACGTGAACATTGAACCGTGA 58.057 45.000 0.00 0.00 0.00 4.35
340 341 2.748461 AACGTGAACATTGAACCGTG 57.252 45.000 0.00 0.00 0.00 4.94
341 342 4.590226 GTTAAACGTGAACATTGAACCGT 58.410 39.130 8.36 0.00 0.00 4.83
342 343 3.655814 CGTTAAACGTGAACATTGAACCG 59.344 43.478 12.56 0.00 36.74 4.44
343 344 3.419596 GCGTTAAACGTGAACATTGAACC 59.580 43.478 12.56 0.00 44.73 3.62
344 345 3.419596 GGCGTTAAACGTGAACATTGAAC 59.580 43.478 12.56 0.00 44.73 3.18
345 346 3.619729 GGCGTTAAACGTGAACATTGAA 58.380 40.909 12.56 0.00 44.73 2.69
346 347 2.348685 CGGCGTTAAACGTGAACATTGA 60.349 45.455 12.56 0.00 44.73 2.57
348 349 1.660896 GCGGCGTTAAACGTGAACATT 60.661 47.619 9.37 0.00 44.73 2.71
350 351 1.276250 GCGGCGTTAAACGTGAACA 59.724 52.632 9.37 0.00 44.73 3.18
353 354 2.279985 TGGCGGCGTTAAACGTGA 60.280 55.556 9.37 0.00 44.73 4.35
354 355 2.172419 CTGGCGGCGTTAAACGTG 59.828 61.111 9.37 0.00 44.73 4.49
369 370 2.187946 CCTCTAACCGGCCAGCTG 59.812 66.667 6.78 6.78 0.00 4.24
370 371 3.083997 CCCTCTAACCGGCCAGCT 61.084 66.667 0.00 0.00 0.00 4.24
371 372 4.176752 CCCCTCTAACCGGCCAGC 62.177 72.222 0.00 0.00 0.00 4.85
372 373 3.480133 CCCCCTCTAACCGGCCAG 61.480 72.222 0.00 0.00 0.00 4.85
373 374 4.342086 ACCCCCTCTAACCGGCCA 62.342 66.667 0.00 0.00 0.00 5.36
375 376 2.686106 TGACCCCCTCTAACCGGC 60.686 66.667 0.00 0.00 0.00 6.13
377 378 2.064581 CCCTGACCCCCTCTAACCG 61.065 68.421 0.00 0.00 0.00 4.44
378 379 0.691413 CTCCCTGACCCCCTCTAACC 60.691 65.000 0.00 0.00 0.00 2.85
379 380 0.338814 TCTCCCTGACCCCCTCTAAC 59.661 60.000 0.00 0.00 0.00 2.34
380 381 1.330155 ATCTCCCTGACCCCCTCTAA 58.670 55.000 0.00 0.00 0.00 2.10
381 382 1.330155 AATCTCCCTGACCCCCTCTA 58.670 55.000 0.00 0.00 0.00 2.43
382 383 0.423544 AAATCTCCCTGACCCCCTCT 59.576 55.000 0.00 0.00 0.00 3.69
383 384 1.064389 CAAAATCTCCCTGACCCCCTC 60.064 57.143 0.00 0.00 0.00 4.30
384 385 1.002857 CAAAATCTCCCTGACCCCCT 58.997 55.000 0.00 0.00 0.00 4.79
385 386 0.033109 CCAAAATCTCCCTGACCCCC 60.033 60.000 0.00 0.00 0.00 5.40
386 387 0.999712 TCCAAAATCTCCCTGACCCC 59.000 55.000 0.00 0.00 0.00 4.95
387 388 1.341089 GGTCCAAAATCTCCCTGACCC 60.341 57.143 0.00 0.00 37.00 4.46
389 390 2.305927 TCAGGTCCAAAATCTCCCTGAC 59.694 50.000 2.67 0.00 45.05 3.51
391 392 3.439857 TTCAGGTCCAAAATCTCCCTG 57.560 47.619 0.00 0.00 43.26 4.45
392 393 3.593328 TCATTCAGGTCCAAAATCTCCCT 59.407 43.478 0.00 0.00 0.00 4.20
393 394 3.696548 GTCATTCAGGTCCAAAATCTCCC 59.303 47.826 0.00 0.00 0.00 4.30
394 395 4.156739 GTGTCATTCAGGTCCAAAATCTCC 59.843 45.833 0.00 0.00 0.00 3.71
395 396 4.761739 TGTGTCATTCAGGTCCAAAATCTC 59.238 41.667 0.00 0.00 0.00 2.75
396 397 4.520492 GTGTGTCATTCAGGTCCAAAATCT 59.480 41.667 0.00 0.00 0.00 2.40
397 398 4.520492 AGTGTGTCATTCAGGTCCAAAATC 59.480 41.667 0.00 0.00 0.00 2.17
398 399 4.473444 AGTGTGTCATTCAGGTCCAAAAT 58.527 39.130 0.00 0.00 0.00 1.82
399 400 3.897239 AGTGTGTCATTCAGGTCCAAAA 58.103 40.909 0.00 0.00 0.00 2.44
400 401 3.576078 AGTGTGTCATTCAGGTCCAAA 57.424 42.857 0.00 0.00 0.00 3.28
401 402 3.576078 AAGTGTGTCATTCAGGTCCAA 57.424 42.857 0.00 0.00 0.00 3.53
402 403 3.646162 AGTAAGTGTGTCATTCAGGTCCA 59.354 43.478 0.00 0.00 0.00 4.02
403 404 3.997021 CAGTAAGTGTGTCATTCAGGTCC 59.003 47.826 0.00 0.00 0.00 4.46
404 405 3.433615 GCAGTAAGTGTGTCATTCAGGTC 59.566 47.826 0.00 0.00 0.00 3.85
405 406 3.181455 TGCAGTAAGTGTGTCATTCAGGT 60.181 43.478 0.00 0.00 0.00 4.00
406 407 3.187227 GTGCAGTAAGTGTGTCATTCAGG 59.813 47.826 0.00 0.00 0.00 3.86
407 408 4.060900 AGTGCAGTAAGTGTGTCATTCAG 58.939 43.478 0.00 0.00 0.00 3.02
410 411 4.450976 TGAAGTGCAGTAAGTGTGTCATT 58.549 39.130 0.00 0.00 0.00 2.57
413 414 4.119862 TCTTGAAGTGCAGTAAGTGTGTC 58.880 43.478 0.00 0.00 0.00 3.67
414 415 4.137116 TCTTGAAGTGCAGTAAGTGTGT 57.863 40.909 0.00 0.00 0.00 3.72
415 416 5.468072 AGAATCTTGAAGTGCAGTAAGTGTG 59.532 40.000 0.00 0.00 0.00 3.82
416 417 5.468072 CAGAATCTTGAAGTGCAGTAAGTGT 59.532 40.000 0.00 0.00 0.00 3.55
417 418 5.106791 CCAGAATCTTGAAGTGCAGTAAGTG 60.107 44.000 0.00 0.00 0.00 3.16
418 419 4.999950 CCAGAATCTTGAAGTGCAGTAAGT 59.000 41.667 0.00 0.00 0.00 2.24
419 420 5.240891 TCCAGAATCTTGAAGTGCAGTAAG 58.759 41.667 0.00 0.00 0.00 2.34
421 422 4.890158 TCCAGAATCTTGAAGTGCAGTA 57.110 40.909 0.00 0.00 0.00 2.74
422 423 3.777106 TCCAGAATCTTGAAGTGCAGT 57.223 42.857 0.00 0.00 0.00 4.40
423 424 4.094590 GTCATCCAGAATCTTGAAGTGCAG 59.905 45.833 0.00 0.00 0.00 4.41
425 426 3.063180 CGTCATCCAGAATCTTGAAGTGC 59.937 47.826 0.00 0.00 0.00 4.40
426 427 4.498241 TCGTCATCCAGAATCTTGAAGTG 58.502 43.478 0.00 0.00 0.00 3.16
427 428 4.808414 TCGTCATCCAGAATCTTGAAGT 57.192 40.909 0.00 0.00 0.00 3.01
428 429 6.674694 AAATCGTCATCCAGAATCTTGAAG 57.325 37.500 0.00 0.00 0.00 3.02
430 431 6.172630 TGAAAATCGTCATCCAGAATCTTGA 58.827 36.000 0.00 0.00 0.00 3.02
431 432 6.426980 TGAAAATCGTCATCCAGAATCTTG 57.573 37.500 0.00 0.00 0.00 3.02
432 433 7.989741 ACTATGAAAATCGTCATCCAGAATCTT 59.010 33.333 0.00 0.00 39.07 2.40
433 434 7.504403 ACTATGAAAATCGTCATCCAGAATCT 58.496 34.615 0.00 0.00 39.07 2.40
436 437 6.255670 CGAACTATGAAAATCGTCATCCAGAA 59.744 38.462 0.00 0.00 39.07 3.02
437 438 5.748630 CGAACTATGAAAATCGTCATCCAGA 59.251 40.000 0.00 0.00 39.07 3.86
438 439 5.748630 TCGAACTATGAAAATCGTCATCCAG 59.251 40.000 0.00 0.00 39.07 3.86
440 441 5.977725 TCTCGAACTATGAAAATCGTCATCC 59.022 40.000 0.00 0.00 39.07 3.51
442 443 6.255887 GGTTCTCGAACTATGAAAATCGTCAT 59.744 38.462 9.41 0.00 40.94 3.06
443 444 5.575606 GGTTCTCGAACTATGAAAATCGTCA 59.424 40.000 9.41 0.00 40.94 4.35
444 445 5.805994 AGGTTCTCGAACTATGAAAATCGTC 59.194 40.000 9.41 0.00 40.94 4.20
445 446 5.721232 AGGTTCTCGAACTATGAAAATCGT 58.279 37.500 9.41 0.00 40.94 3.73
446 447 6.075519 CGTAGGTTCTCGAACTATGAAAATCG 60.076 42.308 9.41 0.00 40.94 3.34
447 448 6.750963 ACGTAGGTTCTCGAACTATGAAAATC 59.249 38.462 9.41 0.00 40.94 2.17
448 449 6.530534 CACGTAGGTTCTCGAACTATGAAAAT 59.469 38.462 9.41 0.00 40.94 1.82
449 450 5.860182 CACGTAGGTTCTCGAACTATGAAAA 59.140 40.000 9.41 0.00 40.94 2.29
450 451 5.181811 TCACGTAGGTTCTCGAACTATGAAA 59.818 40.000 9.41 0.00 40.94 2.69
454 455 4.005650 TGTCACGTAGGTTCTCGAACTAT 58.994 43.478 9.41 2.45 40.94 2.12
456 457 2.031333 GTGTCACGTAGGTTCTCGAACT 60.031 50.000 9.41 0.00 40.94 3.01
457 458 2.314122 GTGTCACGTAGGTTCTCGAAC 58.686 52.381 1.22 1.22 40.45 3.95
459 460 0.877071 GGTGTCACGTAGGTTCTCGA 59.123 55.000 0.00 0.00 0.00 4.04
460 461 0.109412 GGGTGTCACGTAGGTTCTCG 60.109 60.000 0.00 0.00 0.00 4.04
461 462 0.963962 TGGGTGTCACGTAGGTTCTC 59.036 55.000 0.00 0.00 0.00 2.87
462 463 1.640917 ATGGGTGTCACGTAGGTTCT 58.359 50.000 0.00 0.00 0.00 3.01
463 464 3.598019 TTATGGGTGTCACGTAGGTTC 57.402 47.619 0.00 0.00 0.00 3.62
467 468 7.332430 TCAAACTATTTTATGGGTGTCACGTAG 59.668 37.037 0.00 0.00 0.00 3.51
469 470 5.998981 TCAAACTATTTTATGGGTGTCACGT 59.001 36.000 0.00 0.00 0.00 4.49
470 471 6.403200 CCTCAAACTATTTTATGGGTGTCACG 60.403 42.308 0.00 0.00 0.00 4.35
471 472 6.657541 TCCTCAAACTATTTTATGGGTGTCAC 59.342 38.462 0.00 0.00 0.00 3.67
472 473 6.657541 GTCCTCAAACTATTTTATGGGTGTCA 59.342 38.462 0.00 0.00 0.00 3.58
475 476 6.187682 AGGTCCTCAAACTATTTTATGGGTG 58.812 40.000 0.00 0.00 0.00 4.61
477 478 7.343357 TGTAGGTCCTCAAACTATTTTATGGG 58.657 38.462 0.00 0.00 0.00 4.00
478 479 8.047310 ACTGTAGGTCCTCAAACTATTTTATGG 58.953 37.037 0.00 0.00 0.00 2.74
479 480 8.883731 CACTGTAGGTCCTCAAACTATTTTATG 58.116 37.037 0.00 0.00 0.00 1.90
481 482 6.877322 GCACTGTAGGTCCTCAAACTATTTTA 59.123 38.462 0.00 0.00 0.00 1.52
482 483 5.705905 GCACTGTAGGTCCTCAAACTATTTT 59.294 40.000 0.00 0.00 0.00 1.82
483 484 5.221843 TGCACTGTAGGTCCTCAAACTATTT 60.222 40.000 0.00 0.00 0.00 1.40
484 485 4.286032 TGCACTGTAGGTCCTCAAACTATT 59.714 41.667 0.00 0.00 0.00 1.73
487 488 2.047061 TGCACTGTAGGTCCTCAAACT 58.953 47.619 0.00 0.00 0.00 2.66
488 489 2.143925 GTGCACTGTAGGTCCTCAAAC 58.856 52.381 10.32 0.00 0.00 2.93
489 490 2.047061 AGTGCACTGTAGGTCCTCAAA 58.953 47.619 20.97 0.00 0.00 2.69
490 491 1.717032 AGTGCACTGTAGGTCCTCAA 58.283 50.000 20.97 0.00 0.00 3.02
491 492 1.618837 GAAGTGCACTGTAGGTCCTCA 59.381 52.381 22.49 0.00 0.00 3.86
494 495 1.797025 GTGAAGTGCACTGTAGGTCC 58.203 55.000 22.49 4.36 44.27 4.46
505 506 9.745323 GCAAATAATAATTTTTCAGTGAAGTGC 57.255 29.630 5.56 0.36 32.87 4.40
548 549 7.603784 GGAAATTTTACTGCCAACTTCATGAAT 59.396 33.333 8.96 0.00 0.00 2.57
552 553 6.267471 TCAGGAAATTTTACTGCCAACTTCAT 59.733 34.615 15.37 0.00 32.42 2.57
561 562 7.223387 CCATTTAGCATCAGGAAATTTTACTGC 59.777 37.037 15.37 6.27 32.42 4.40
589 590 3.675775 GCTGCTGCCAATTTTCCGATTAA 60.676 43.478 3.85 0.00 0.00 1.40
601 602 2.282603 TGATGCTGCTGCTGCCAA 60.283 55.556 25.44 11.01 40.48 4.52
604 605 0.952280 ATATGTGATGCTGCTGCTGC 59.048 50.000 22.51 22.51 40.48 5.25
605 606 3.751698 ACATATATGTGATGCTGCTGCTG 59.248 43.478 17.60 0.77 40.03 4.41
620 621 8.322091 GCCCCTGAATACTGAACTAACATATAT 58.678 37.037 0.00 0.00 0.00 0.86
621 622 7.291416 TGCCCCTGAATACTGAACTAACATATA 59.709 37.037 0.00 0.00 0.00 0.86
624 625 4.227300 TGCCCCTGAATACTGAACTAACAT 59.773 41.667 0.00 0.00 0.00 2.71
625 626 3.585289 TGCCCCTGAATACTGAACTAACA 59.415 43.478 0.00 0.00 0.00 2.41
627 628 4.919774 TTGCCCCTGAATACTGAACTAA 57.080 40.909 0.00 0.00 0.00 2.24
657 3513 2.234661 AGGTGACAGCTGATTCGAATGA 59.765 45.455 23.35 6.19 0.00 2.57
691 3547 2.223443 TGGAGCTGCTACAAGGGCA 61.223 57.895 13.21 0.00 38.10 5.36
692 3548 1.746991 GTGGAGCTGCTACAAGGGC 60.747 63.158 17.70 0.00 0.00 5.19
693 3549 0.674895 GTGTGGAGCTGCTACAAGGG 60.675 60.000 17.70 0.00 39.86 3.95
697 3553 1.342074 AGAAGTGTGGAGCTGCTACA 58.658 50.000 11.31 11.31 35.43 2.74
989 3907 1.681166 CCTTGTCCATCCTGGCTGAAG 60.681 57.143 0.00 0.00 37.47 3.02
1170 4111 0.105778 CTGTCAAGCCTAGCCTAGCC 59.894 60.000 0.00 0.00 0.00 3.93
1254 4231 7.221838 CACAAAACGTCAACATCCAAATTAACT 59.778 33.333 0.00 0.00 0.00 2.24
1259 4236 4.803088 CACACAAAACGTCAACATCCAAAT 59.197 37.500 0.00 0.00 0.00 2.32
1272 4250 2.449189 CACATCACACCACACAAAACG 58.551 47.619 0.00 0.00 0.00 3.60
1287 4265 1.834263 AGGACTTAGGAGCACCACATC 59.166 52.381 2.07 0.00 38.94 3.06
1327 4320 4.042398 CCAAGACCTAACACATCGATACG 58.958 47.826 0.00 0.00 0.00 3.06
1351 4344 6.345250 CGATCAAGCAAATTCACAACAAAGAC 60.345 38.462 0.00 0.00 0.00 3.01
1376 4369 7.428826 TGCTTTTTCAGAGATCTTCTTTTTCC 58.571 34.615 0.00 0.00 32.41 3.13
1523 4537 7.671495 ATAAAAACATTTCCAAAGGATGCAC 57.329 32.000 0.00 0.00 0.00 4.57
1549 4563 3.924114 ACGACATACCCAATCCAATCA 57.076 42.857 0.00 0.00 0.00 2.57
1604 4632 2.479656 CCACAAATTCCCAAAATGCACG 59.520 45.455 0.00 0.00 0.00 5.34
1642 4670 0.959372 ATGCAGACTGCTCTTGCCAC 60.959 55.000 26.94 0.00 45.31 5.01
1798 4831 9.081997 CATGAGCACTAAAGTTCTAAGTTCTAG 57.918 37.037 0.00 0.00 0.00 2.43
1905 4956 3.350833 AGAATGAACCATGAGCAAGGAC 58.649 45.455 0.00 0.00 0.00 3.85
1928 4979 7.618137 AGGCATTAAAAATTCAGAAGCTGATT 58.382 30.769 0.00 0.00 40.39 2.57
2033 6831 3.225104 AGACCAAGAGATTTGCAGCAAA 58.775 40.909 22.71 22.71 37.75 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.