Multiple sequence alignment - TraesCS1D01G377400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G377400 chr1D 100.000 2141 0 0 1 2141 453570148 453572288 0.000000e+00 3954.0
1 TraesCS1D01G377400 chr1D 84.272 852 63 33 608 1426 453552962 453553775 0.000000e+00 765.0
2 TraesCS1D01G377400 chr1D 95.489 266 10 2 1450 1713 350973112 350972847 7.060000e-115 424.0
3 TraesCS1D01G377400 chr1D 87.931 174 18 2 957 1130 453269090 453269260 3.600000e-48 202.0
4 TraesCS1D01G377400 chr1D 82.301 226 27 9 1767 1982 453554419 453554641 1.310000e-42 183.0
5 TraesCS1D01G377400 chr1A 89.531 1194 70 25 726 1893 548452662 548453826 0.000000e+00 1461.0
6 TraesCS1D01G377400 chr1A 83.081 857 81 37 608 1436 548443815 548444635 0.000000e+00 721.0
7 TraesCS1D01G377400 chr1A 95.726 117 5 0 1895 2011 548453920 548454036 2.800000e-44 189.0
8 TraesCS1D01G377400 chr1A 85.792 183 12 8 957 1130 547959005 547959182 4.690000e-42 182.0
9 TraesCS1D01G377400 chr1A 84.746 177 15 8 951 1127 547974855 547975019 1.310000e-37 167.0
10 TraesCS1D01G377400 chr1A 80.189 212 27 12 1785 1982 548444713 548444923 6.160000e-31 145.0
11 TraesCS1D01G377400 chr1B 86.890 1251 95 28 209 1430 624015559 624016769 0.000000e+00 1338.0
12 TraesCS1D01G377400 chr1B 81.841 782 70 31 611 1379 623988901 623989623 1.830000e-165 592.0
13 TraesCS1D01G377400 chr1B 87.356 174 19 2 957 1130 623722455 623722625 1.680000e-46 196.0
14 TraesCS1D01G377400 chr1B 80.717 223 34 5 1764 1984 624018398 624018613 4.730000e-37 165.0
15 TraesCS1D01G377400 chr1B 84.211 95 13 2 341 435 209565784 209565876 8.140000e-15 91.6
16 TraesCS1D01G377400 chrUn 95.489 266 10 2 1450 1713 246702824 246703089 7.060000e-115 424.0
17 TraesCS1D01G377400 chrUn 93.478 138 6 2 2003 2140 255360977 255360843 3.600000e-48 202.0
18 TraesCS1D01G377400 chr7B 95.489 266 10 2 1450 1713 698132440 698132705 7.060000e-115 424.0
19 TraesCS1D01G377400 chr7B 95.489 266 10 2 1450 1713 742931656 742931391 7.060000e-115 424.0
20 TraesCS1D01G377400 chr6D 95.489 266 10 2 1450 1713 430474030 430474295 7.060000e-115 424.0
21 TraesCS1D01G377400 chr6B 95.489 266 10 2 1450 1713 128895812 128896077 7.060000e-115 424.0
22 TraesCS1D01G377400 chr6A 95.489 266 10 2 1450 1713 597222876 597222611 7.060000e-115 424.0
23 TraesCS1D01G377400 chr5B 95.489 266 10 2 1450 1713 695879523 695879788 7.060000e-115 424.0
24 TraesCS1D01G377400 chr5B 95.385 130 4 1 2012 2141 242429232 242429359 2.790000e-49 206.0
25 TraesCS1D01G377400 chr5B 93.478 138 6 2 2003 2140 595027290 595027156 3.600000e-48 202.0
26 TraesCS1D01G377400 chr2B 95.489 133 3 2 2008 2140 368969125 368969254 2.150000e-50 209.0
27 TraesCS1D01G377400 chr2B 95.349 129 4 2 2012 2140 110768817 110768943 1.000000e-48 204.0
28 TraesCS1D01G377400 chr5A 93.478 138 6 2 2003 2140 42268107 42268241 3.600000e-48 202.0
29 TraesCS1D01G377400 chr2A 93.478 138 6 2 2004 2140 25023818 25023683 3.600000e-48 202.0
30 TraesCS1D01G377400 chr4B 92.806 139 6 3 2004 2141 672006870 672007005 4.660000e-47 198.0
31 TraesCS1D01G377400 chr3B 92.806 139 7 2 2003 2140 440116686 440116550 4.660000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G377400 chr1D 453570148 453572288 2140 False 3954.0 3954 100.0000 1 2141 1 chr1D.!!$F2 2140
1 TraesCS1D01G377400 chr1D 453552962 453554641 1679 False 474.0 765 83.2865 608 1982 2 chr1D.!!$F3 1374
2 TraesCS1D01G377400 chr1A 548452662 548454036 1374 False 825.0 1461 92.6285 726 2011 2 chr1A.!!$F4 1285
3 TraesCS1D01G377400 chr1A 548443815 548444923 1108 False 433.0 721 81.6350 608 1982 2 chr1A.!!$F3 1374
4 TraesCS1D01G377400 chr1B 624015559 624018613 3054 False 751.5 1338 83.8035 209 1984 2 chr1B.!!$F4 1775
5 TraesCS1D01G377400 chr1B 623988901 623989623 722 False 592.0 592 81.8410 611 1379 1 chr1B.!!$F3 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.030235 TTACTGATCGGGCGATGTCG 59.97 55.0 6.47 0.0 43.27 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1437 1.073284 ACACCCAACAGACCCATACAC 59.927 52.381 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.440539 ATTACTGATCGGGCGATGTC 57.559 50.000 6.47 0.00 34.60 3.06
20 21 0.030235 TTACTGATCGGGCGATGTCG 59.970 55.000 6.47 0.00 43.27 4.35
21 22 0.816421 TACTGATCGGGCGATGTCGA 60.816 55.000 6.47 0.00 43.02 4.20
22 23 1.371022 CTGATCGGGCGATGTCGAG 60.371 63.158 6.60 0.00 43.02 4.04
23 24 1.786049 CTGATCGGGCGATGTCGAGA 61.786 60.000 6.60 2.71 43.02 4.04
24 25 1.359117 GATCGGGCGATGTCGAGAA 59.641 57.895 6.60 0.00 43.02 2.87
25 26 0.935366 GATCGGGCGATGTCGAGAAC 60.935 60.000 6.60 0.00 43.02 3.01
26 27 2.351336 ATCGGGCGATGTCGAGAACC 62.351 60.000 6.60 1.77 43.02 3.62
27 28 2.582498 GGGCGATGTCGAGAACCG 60.582 66.667 6.60 3.86 43.02 4.44
28 29 2.181021 GGCGATGTCGAGAACCGT 59.819 61.111 6.60 0.00 43.02 4.83
29 30 1.445582 GGCGATGTCGAGAACCGTT 60.446 57.895 6.60 0.00 43.02 4.44
30 31 1.012486 GGCGATGTCGAGAACCGTTT 61.012 55.000 6.60 0.00 43.02 3.60
31 32 1.621107 GCGATGTCGAGAACCGTTTA 58.379 50.000 6.60 0.00 43.02 2.01
32 33 2.190981 GCGATGTCGAGAACCGTTTAT 58.809 47.619 6.60 0.00 43.02 1.40
33 34 2.215812 GCGATGTCGAGAACCGTTTATC 59.784 50.000 6.60 0.00 43.02 1.75
34 35 2.787680 CGATGTCGAGAACCGTTTATCC 59.212 50.000 0.00 0.00 43.02 2.59
35 36 2.267188 TGTCGAGAACCGTTTATCCG 57.733 50.000 0.00 0.00 39.75 4.18
36 37 1.811965 TGTCGAGAACCGTTTATCCGA 59.188 47.619 0.00 0.00 39.75 4.55
37 38 2.159476 TGTCGAGAACCGTTTATCCGAG 60.159 50.000 0.00 0.00 39.75 4.63
38 39 1.402968 TCGAGAACCGTTTATCCGAGG 59.597 52.381 0.00 0.00 39.75 4.63
39 40 1.133790 CGAGAACCGTTTATCCGAGGT 59.866 52.381 0.00 0.00 38.88 3.85
41 42 3.181497 CGAGAACCGTTTATCCGAGGTTA 60.181 47.826 0.00 0.00 45.88 2.85
42 43 4.675146 CGAGAACCGTTTATCCGAGGTTAA 60.675 45.833 0.00 0.00 45.88 2.01
43 44 5.349061 AGAACCGTTTATCCGAGGTTAAT 57.651 39.130 0.00 0.00 45.88 1.40
44 45 6.469782 AGAACCGTTTATCCGAGGTTAATA 57.530 37.500 0.00 0.00 45.88 0.98
45 46 7.059202 AGAACCGTTTATCCGAGGTTAATAT 57.941 36.000 0.00 0.00 45.88 1.28
46 47 7.150640 AGAACCGTTTATCCGAGGTTAATATC 58.849 38.462 0.00 0.00 45.88 1.63
47 48 5.464168 ACCGTTTATCCGAGGTTAATATCG 58.536 41.667 5.55 5.55 38.65 2.92
48 49 5.241506 ACCGTTTATCCGAGGTTAATATCGA 59.758 40.000 12.32 0.00 41.40 3.59
49 50 6.071728 ACCGTTTATCCGAGGTTAATATCGAT 60.072 38.462 2.16 2.16 41.40 3.59
50 51 6.252869 CCGTTTATCCGAGGTTAATATCGATG 59.747 42.308 8.54 0.00 41.40 3.84
51 52 6.805271 CGTTTATCCGAGGTTAATATCGATGT 59.195 38.462 8.54 0.00 41.40 3.06
52 53 7.201325 CGTTTATCCGAGGTTAATATCGATGTG 60.201 40.741 8.54 0.00 41.40 3.21
53 54 5.977489 ATCCGAGGTTAATATCGATGTGA 57.023 39.130 8.54 0.00 41.40 3.58
54 55 5.777850 TCCGAGGTTAATATCGATGTGAA 57.222 39.130 8.54 0.00 41.40 3.18
55 56 5.769367 TCCGAGGTTAATATCGATGTGAAG 58.231 41.667 8.54 0.00 41.40 3.02
56 57 5.533528 TCCGAGGTTAATATCGATGTGAAGA 59.466 40.000 8.54 0.00 41.40 2.87
57 58 6.040054 TCCGAGGTTAATATCGATGTGAAGAA 59.960 38.462 8.54 0.00 41.40 2.52
58 59 6.700081 CCGAGGTTAATATCGATGTGAAGAAA 59.300 38.462 8.54 0.00 41.40 2.52
59 60 7.385205 CCGAGGTTAATATCGATGTGAAGAAAT 59.615 37.037 8.54 0.00 41.40 2.17
60 61 8.765219 CGAGGTTAATATCGATGTGAAGAAATT 58.235 33.333 8.54 0.00 41.40 1.82
69 70 8.731275 ATCGATGTGAAGAAATTATTACACCA 57.269 30.769 0.00 0.00 0.00 4.17
70 71 8.196802 TCGATGTGAAGAAATTATTACACCAG 57.803 34.615 0.00 0.00 0.00 4.00
71 72 8.038351 TCGATGTGAAGAAATTATTACACCAGA 58.962 33.333 0.00 0.00 0.00 3.86
72 73 8.830580 CGATGTGAAGAAATTATTACACCAGAT 58.169 33.333 0.00 0.00 0.00 2.90
162 163 9.528018 ACCCTAATTATTTTATCAATTTGTGCG 57.472 29.630 0.00 0.00 0.00 5.34
163 164 9.743057 CCCTAATTATTTTATCAATTTGTGCGA 57.257 29.630 0.00 0.00 0.00 5.10
170 171 7.706281 TTTTATCAATTTGTGCGATGTTTGT 57.294 28.000 0.00 0.00 0.00 2.83
171 172 7.706281 TTTATCAATTTGTGCGATGTTTGTT 57.294 28.000 0.00 0.00 0.00 2.83
172 173 7.706281 TTATCAATTTGTGCGATGTTTGTTT 57.294 28.000 0.00 0.00 0.00 2.83
173 174 5.386810 TCAATTTGTGCGATGTTTGTTTG 57.613 34.783 0.00 0.00 0.00 2.93
174 175 4.867047 TCAATTTGTGCGATGTTTGTTTGT 59.133 33.333 0.00 0.00 0.00 2.83
175 176 6.036470 TCAATTTGTGCGATGTTTGTTTGTA 58.964 32.000 0.00 0.00 0.00 2.41
176 177 5.881637 ATTTGTGCGATGTTTGTTTGTAC 57.118 34.783 0.00 0.00 0.00 2.90
177 178 2.975446 TGTGCGATGTTTGTTTGTACG 58.025 42.857 0.00 0.00 0.00 3.67
178 179 2.286477 TGTGCGATGTTTGTTTGTACGG 60.286 45.455 0.00 0.00 0.00 4.02
179 180 1.941294 TGCGATGTTTGTTTGTACGGT 59.059 42.857 0.00 0.00 0.00 4.83
180 181 2.032722 TGCGATGTTTGTTTGTACGGTC 60.033 45.455 0.00 0.00 0.00 4.79
181 182 2.222445 GCGATGTTTGTTTGTACGGTCT 59.778 45.455 0.00 0.00 0.00 3.85
182 183 3.303526 GCGATGTTTGTTTGTACGGTCTT 60.304 43.478 0.00 0.00 0.00 3.01
183 184 4.084433 GCGATGTTTGTTTGTACGGTCTTA 60.084 41.667 0.00 0.00 0.00 2.10
184 185 5.390145 GCGATGTTTGTTTGTACGGTCTTAT 60.390 40.000 0.00 0.00 0.00 1.73
185 186 6.183360 GCGATGTTTGTTTGTACGGTCTTATA 60.183 38.462 0.00 0.00 0.00 0.98
186 187 7.464977 GCGATGTTTGTTTGTACGGTCTTATAT 60.465 37.037 0.00 0.00 0.00 0.86
187 188 9.022915 CGATGTTTGTTTGTACGGTCTTATATA 57.977 33.333 0.00 0.00 0.00 0.86
189 190 9.880157 ATGTTTGTTTGTACGGTCTTATATACT 57.120 29.630 0.00 0.00 0.00 2.12
190 191 9.709495 TGTTTGTTTGTACGGTCTTATATACTT 57.291 29.630 0.00 0.00 0.00 2.24
194 195 9.709495 TGTTTGTACGGTCTTATATACTTTTGT 57.291 29.630 0.00 0.00 0.00 2.83
197 198 9.709495 TTGTACGGTCTTATATACTTTTGTTGT 57.291 29.630 0.00 0.00 0.00 3.32
198 199 9.709495 TGTACGGTCTTATATACTTTTGTTGTT 57.291 29.630 0.00 0.00 0.00 2.83
199 200 9.962759 GTACGGTCTTATATACTTTTGTTGTTG 57.037 33.333 0.00 0.00 0.00 3.33
200 201 8.611654 ACGGTCTTATATACTTTTGTTGTTGT 57.388 30.769 0.00 0.00 0.00 3.32
201 202 9.059260 ACGGTCTTATATACTTTTGTTGTTGTT 57.941 29.630 0.00 0.00 0.00 2.83
202 203 9.325150 CGGTCTTATATACTTTTGTTGTTGTTG 57.675 33.333 0.00 0.00 0.00 3.33
203 204 9.620660 GGTCTTATATACTTTTGTTGTTGTTGG 57.379 33.333 0.00 0.00 0.00 3.77
243 244 4.922206 AGCTAAACCAGATGTTCATTCCA 58.078 39.130 0.00 0.00 35.67 3.53
252 253 7.121382 ACCAGATGTTCATTCCATTAACAGAT 58.879 34.615 0.00 0.00 36.62 2.90
280 281 1.959848 GCACCAGCTTGGGTTTCTC 59.040 57.895 7.06 0.00 43.37 2.87
289 290 2.819348 GCTTGGGTTTCTCATGGAACCT 60.819 50.000 19.17 0.00 33.13 3.50
314 315 4.513442 AGAGTAACAAGAGCACACAACAA 58.487 39.130 0.00 0.00 0.00 2.83
319 320 2.184448 CAAGAGCACACAACAAAACCG 58.816 47.619 0.00 0.00 0.00 4.44
332 333 1.296056 AAAACCGCAAGATCCGACCG 61.296 55.000 0.00 0.00 43.02 4.79
404 405 6.017109 GCAACAAAGTTTCATAGAGTCTTCCA 60.017 38.462 0.00 0.00 0.00 3.53
433 434 5.649782 ATCCGAAGCAGAATGAAAAACAT 57.350 34.783 0.00 0.00 39.69 2.71
435 436 6.182039 TCCGAAGCAGAATGAAAAACATAG 57.818 37.500 0.00 0.00 39.69 2.23
437 438 6.429692 TCCGAAGCAGAATGAAAAACATAGAA 59.570 34.615 0.00 0.00 39.69 2.10
438 439 7.040755 TCCGAAGCAGAATGAAAAACATAGAAA 60.041 33.333 0.00 0.00 39.69 2.52
439 440 7.061094 CCGAAGCAGAATGAAAAACATAGAAAC 59.939 37.037 0.00 0.00 39.69 2.78
440 441 7.805071 CGAAGCAGAATGAAAAACATAGAAACT 59.195 33.333 0.00 0.00 39.69 2.66
441 442 8.807667 AAGCAGAATGAAAAACATAGAAACTG 57.192 30.769 0.00 0.00 39.69 3.16
443 444 6.865205 GCAGAATGAAAAACATAGAAACTGCT 59.135 34.615 0.00 0.00 39.69 4.24
460 461 3.055819 ACTGCTGATAATCTGAACGGTGT 60.056 43.478 0.00 0.00 0.00 4.16
483 484 3.225104 CATCCATGTTCCCGGAATGAAT 58.775 45.455 0.73 0.00 34.22 2.57
486 487 4.093011 TCCATGTTCCCGGAATGAATTTT 58.907 39.130 0.73 0.00 0.00 1.82
487 488 4.081752 TCCATGTTCCCGGAATGAATTTTG 60.082 41.667 0.73 0.00 0.00 2.44
488 489 3.311486 TGTTCCCGGAATGAATTTTGC 57.689 42.857 0.73 0.00 0.00 3.68
491 492 4.464244 TGTTCCCGGAATGAATTTTGCATA 59.536 37.500 0.73 0.00 0.00 3.14
492 493 5.128499 TGTTCCCGGAATGAATTTTGCATAT 59.872 36.000 0.73 0.00 0.00 1.78
494 495 7.015098 TGTTCCCGGAATGAATTTTGCATATAT 59.985 33.333 0.73 0.00 0.00 0.86
497 498 9.253832 TCCCGGAATGAATTTTGCATATATATT 57.746 29.630 0.73 0.00 0.00 1.28
508 509 9.733556 ATTTTGCATATATATTACCTTCCACGA 57.266 29.630 0.00 0.00 0.00 4.35
509 510 8.542497 TTTGCATATATATTACCTTCCACGAC 57.458 34.615 0.00 0.00 0.00 4.34
510 511 7.234661 TGCATATATATTACCTTCCACGACA 57.765 36.000 0.00 0.00 0.00 4.35
514 515 4.811969 ATATTACCTTCCACGACACACA 57.188 40.909 0.00 0.00 0.00 3.72
515 516 2.228138 TTACCTTCCACGACACACAC 57.772 50.000 0.00 0.00 0.00 3.82
526 527 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
542 543 1.078709 CACACGCACGAATGAATCCT 58.921 50.000 0.00 0.00 0.00 3.24
543 544 2.267426 CACACGCACGAATGAATCCTA 58.733 47.619 0.00 0.00 0.00 2.94
608 609 1.800681 GCTTTGGCCACGTATGTCC 59.199 57.895 3.88 0.00 0.00 4.02
609 610 1.654023 GCTTTGGCCACGTATGTCCC 61.654 60.000 3.88 0.00 0.00 4.46
611 612 1.828461 TTTGGCCACGTATGTCCCGA 61.828 55.000 3.88 0.00 0.00 5.14
614 622 2.420568 GCCACGTATGTCCCGAGGA 61.421 63.158 0.50 0.00 38.16 3.71
626 634 2.266055 CGAGGAAGTGTCCCCTGC 59.734 66.667 0.00 0.00 46.30 4.85
761 776 1.307691 ATTGCCAGCCTCCCTCTCT 60.308 57.895 0.00 0.00 0.00 3.10
762 777 1.344191 ATTGCCAGCCTCCCTCTCTC 61.344 60.000 0.00 0.00 0.00 3.20
763 778 2.042025 GCCAGCCTCCCTCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
776 800 3.071602 CCCTCTCTCTCTCTCTCTCGATT 59.928 52.174 0.00 0.00 0.00 3.34
810 838 4.991056 CAGGTTATGATATGCGCAAGTAGT 59.009 41.667 17.11 0.00 41.68 2.73
816 844 0.534873 TATGCGCAAGTAGTCTGCCA 59.465 50.000 17.11 0.00 41.68 4.92
974 1011 1.352352 CTCAACCACCCTCCTGTTCAT 59.648 52.381 0.00 0.00 0.00 2.57
981 1018 2.270205 CTCCTGTTCATGCGCCCT 59.730 61.111 4.18 0.00 0.00 5.19
982 1019 1.522092 CTCCTGTTCATGCGCCCTA 59.478 57.895 4.18 0.00 0.00 3.53
998 1035 3.153919 GCCCTATCTACCTCAGAGTCAG 58.846 54.545 0.00 0.00 36.48 3.51
1020 1057 3.376546 GGATGAACAAGATGAAGAGCCAC 59.623 47.826 0.00 0.00 0.00 5.01
1154 1219 2.172930 ACGACTAGCAGATCCACCTCTA 59.827 50.000 0.00 0.00 0.00 2.43
1200 1265 5.454471 CCTTGATTCTAGCTAGGCTTGACAT 60.454 44.000 20.58 2.33 39.74 3.06
1212 1277 6.487331 GCTAGGCTTGACATAGTAGTTCTCTA 59.513 42.308 0.00 0.00 0.00 2.43
1214 1279 5.830991 AGGCTTGACATAGTAGTTCTCTAGG 59.169 44.000 0.00 0.00 0.00 3.02
1216 1281 5.508320 GCTTGACATAGTAGTTCTCTAGGGC 60.508 48.000 0.00 0.00 0.00 5.19
1217 1282 4.135306 TGACATAGTAGTTCTCTAGGGCG 58.865 47.826 0.00 0.00 30.90 6.13
1218 1283 4.136051 GACATAGTAGTTCTCTAGGGCGT 58.864 47.826 0.00 0.00 0.00 5.68
1219 1284 3.884091 ACATAGTAGTTCTCTAGGGCGTG 59.116 47.826 0.00 0.00 0.00 5.34
1220 1285 1.104630 AGTAGTTCTCTAGGGCGTGC 58.895 55.000 0.00 0.00 0.00 5.34
1221 1286 0.248539 GTAGTTCTCTAGGGCGTGCG 60.249 60.000 0.00 0.00 0.00 5.34
1222 1287 0.679002 TAGTTCTCTAGGGCGTGCGT 60.679 55.000 0.00 0.00 0.00 5.24
1223 1288 1.805945 GTTCTCTAGGGCGTGCGTG 60.806 63.158 0.00 0.00 0.00 5.34
1338 1437 1.517694 GCAATGGCAAGGATGTGCG 60.518 57.895 0.00 0.00 45.91 5.34
1372 1471 1.305930 GGGTGTTGGCATCCTCGTTC 61.306 60.000 0.00 0.00 42.60 3.95
1379 1478 4.081365 TGTTGGCATCCTCGTTCTGTATTA 60.081 41.667 0.00 0.00 0.00 0.98
1382 1481 4.404394 TGGCATCCTCGTTCTGTATTAGAA 59.596 41.667 0.00 0.00 43.01 2.10
1421 1521 8.293157 AGAAATGAAAGATCTCGGAAAAGAAAC 58.707 33.333 0.00 0.00 0.00 2.78
1460 3074 4.384318 GGTTTATCTCTTTCCCCTCCACTC 60.384 50.000 0.00 0.00 0.00 3.51
1470 3084 0.040204 CCCTCCACTCCTTTTGGCAT 59.960 55.000 0.00 0.00 40.12 4.40
1534 3148 5.355350 ACGAAATGAGATTGGATTGTTCCTC 59.645 40.000 0.00 0.00 43.07 3.71
1546 3160 5.532406 TGGATTGTTCCTCAGTTGAAAAGAG 59.468 40.000 0.00 0.00 43.07 2.85
1611 3225 6.942976 TGATCTTTACCGACTCAATTAAGGT 58.057 36.000 0.00 0.00 38.86 3.50
1735 3349 8.964476 TCTCTTCCATTTTTATGATCTGTACC 57.036 34.615 0.00 0.00 0.00 3.34
1748 3362 2.821366 GTACCGTCGGAGGCTCGA 60.821 66.667 20.51 6.69 36.76 4.04
1824 3638 7.610305 GGGGAGTGTTCTTACTTCATTCAATTA 59.390 37.037 0.00 0.00 0.00 1.40
1825 3639 9.178758 GGGAGTGTTCTTACTTCATTCAATTAT 57.821 33.333 0.00 0.00 0.00 1.28
1845 3667 8.328146 CAATTATCAGTGGTGTGAACTATTACG 58.672 37.037 0.00 0.00 0.00 3.18
1867 3689 1.003580 ACACATTGCCATCTCGAAGGT 59.996 47.619 0.00 0.00 0.00 3.50
1884 3706 2.783135 AGGTGTGCATTTCGTGAATCT 58.217 42.857 0.00 0.00 0.00 2.40
1989 3905 6.157211 AGAACGACCAGATTAAGTTGTAGTG 58.843 40.000 0.00 0.00 30.26 2.74
1995 3911 4.336433 CCAGATTAAGTTGTAGTGCATGGG 59.664 45.833 0.00 0.00 0.00 4.00
2011 3927 5.524646 GTGCATGGGTCATGGAAAAATTATG 59.475 40.000 9.54 0.00 43.25 1.90
2012 3928 5.424573 TGCATGGGTCATGGAAAAATTATGA 59.575 36.000 9.54 0.00 39.12 2.15
2013 3929 5.987347 GCATGGGTCATGGAAAAATTATGAG 59.013 40.000 9.54 0.00 41.64 2.90
2014 3930 6.407299 GCATGGGTCATGGAAAAATTATGAGT 60.407 38.462 9.54 0.00 41.64 3.41
2015 3931 6.528537 TGGGTCATGGAAAAATTATGAGTG 57.471 37.500 0.00 0.00 32.00 3.51
2016 3932 6.252233 TGGGTCATGGAAAAATTATGAGTGA 58.748 36.000 0.00 0.00 32.00 3.41
2017 3933 6.723515 TGGGTCATGGAAAAATTATGAGTGAA 59.276 34.615 0.00 0.00 32.00 3.18
2018 3934 7.093814 TGGGTCATGGAAAAATTATGAGTGAAG 60.094 37.037 0.00 0.00 32.00 3.02
2019 3935 7.093771 GGGTCATGGAAAAATTATGAGTGAAGT 60.094 37.037 0.00 0.00 32.00 3.01
2020 3936 7.756722 GGTCATGGAAAAATTATGAGTGAAGTG 59.243 37.037 0.00 0.00 32.00 3.16
2021 3937 7.274250 GTCATGGAAAAATTATGAGTGAAGTGC 59.726 37.037 0.00 0.00 32.00 4.40
2022 3938 6.647334 TGGAAAAATTATGAGTGAAGTGCA 57.353 33.333 0.00 0.00 0.00 4.57
2032 3948 1.797025 GTGAAGTGCACTGTAGGTCC 58.203 55.000 22.49 4.36 44.27 4.46
2033 3949 1.344763 GTGAAGTGCACTGTAGGTCCT 59.655 52.381 22.49 0.61 44.27 3.85
2034 3950 2.047061 TGAAGTGCACTGTAGGTCCTT 58.953 47.619 22.49 0.00 0.00 3.36
2035 3951 2.224281 TGAAGTGCACTGTAGGTCCTTG 60.224 50.000 22.49 0.00 0.00 3.61
2036 3952 1.717032 AGTGCACTGTAGGTCCTTGA 58.283 50.000 20.97 0.00 0.00 3.02
2037 3953 2.047061 AGTGCACTGTAGGTCCTTGAA 58.953 47.619 20.97 0.00 0.00 2.69
2038 3954 2.143925 GTGCACTGTAGGTCCTTGAAC 58.856 52.381 10.32 0.00 0.00 3.18
2039 3955 2.047061 TGCACTGTAGGTCCTTGAACT 58.953 47.619 0.00 0.00 32.68 3.01
2040 3956 3.006537 GTGCACTGTAGGTCCTTGAACTA 59.993 47.826 10.32 0.00 29.72 2.24
2041 3957 3.838317 TGCACTGTAGGTCCTTGAACTAT 59.162 43.478 0.00 0.00 34.19 2.12
2042 3958 4.286032 TGCACTGTAGGTCCTTGAACTATT 59.714 41.667 0.00 0.00 34.19 1.73
2043 3959 4.631813 GCACTGTAGGTCCTTGAACTATTG 59.368 45.833 0.00 0.00 34.19 1.90
2044 3960 4.631813 CACTGTAGGTCCTTGAACTATTGC 59.368 45.833 0.00 0.00 34.19 3.56
2045 3961 4.286032 ACTGTAGGTCCTTGAACTATTGCA 59.714 41.667 0.00 0.00 34.19 4.08
2046 3962 4.832248 TGTAGGTCCTTGAACTATTGCAG 58.168 43.478 0.00 0.00 34.19 4.41
2047 3963 3.356529 AGGTCCTTGAACTATTGCAGG 57.643 47.619 0.00 0.00 0.00 4.85
2048 3964 2.025887 AGGTCCTTGAACTATTGCAGGG 60.026 50.000 0.00 0.00 32.98 4.45
2049 3965 2.369394 GTCCTTGAACTATTGCAGGGG 58.631 52.381 0.00 0.00 32.61 4.79
2050 3966 1.992557 TCCTTGAACTATTGCAGGGGT 59.007 47.619 0.00 0.00 32.61 4.95
2051 3967 2.094675 CCTTGAACTATTGCAGGGGTG 58.905 52.381 0.00 0.00 0.00 4.61
2052 3968 2.555227 CCTTGAACTATTGCAGGGGTGT 60.555 50.000 0.00 0.00 0.00 4.16
2053 3969 2.489938 TGAACTATTGCAGGGGTGTC 57.510 50.000 0.00 0.00 0.00 3.67
2054 3970 1.702401 TGAACTATTGCAGGGGTGTCA 59.298 47.619 0.00 0.00 0.00 3.58
2055 3971 2.084546 GAACTATTGCAGGGGTGTCAC 58.915 52.381 0.00 0.00 0.00 3.67
2056 3972 0.036388 ACTATTGCAGGGGTGTCACG 60.036 55.000 0.00 0.00 0.00 4.35
2057 3973 0.036388 CTATTGCAGGGGTGTCACGT 60.036 55.000 0.00 0.00 0.00 4.49
2058 3974 1.206132 CTATTGCAGGGGTGTCACGTA 59.794 52.381 0.00 0.00 0.00 3.57
2059 3975 0.618458 ATTGCAGGGGTGTCACGTAT 59.382 50.000 0.00 0.00 0.00 3.06
2060 3976 1.268066 TTGCAGGGGTGTCACGTATA 58.732 50.000 0.00 0.00 0.00 1.47
2061 3977 0.821517 TGCAGGGGTGTCACGTATAG 59.178 55.000 0.00 0.00 0.00 1.31
2062 3978 0.104304 GCAGGGGTGTCACGTATAGG 59.896 60.000 0.00 0.00 0.00 2.57
2063 3979 1.481871 CAGGGGTGTCACGTATAGGT 58.518 55.000 0.00 0.00 0.00 3.08
2064 3980 1.407979 CAGGGGTGTCACGTATAGGTC 59.592 57.143 0.00 0.00 0.00 3.85
2065 3981 0.749049 GGGGTGTCACGTATAGGTCC 59.251 60.000 0.00 0.00 0.00 4.46
2066 3982 1.687368 GGGGTGTCACGTATAGGTCCT 60.687 57.143 0.00 0.00 0.00 3.85
2067 3983 1.680207 GGGTGTCACGTATAGGTCCTC 59.320 57.143 0.00 0.00 0.00 3.71
2068 3984 1.332997 GGTGTCACGTATAGGTCCTCG 59.667 57.143 0.00 0.00 0.00 4.63
2069 3985 2.283298 GTGTCACGTATAGGTCCTCGA 58.717 52.381 5.53 0.00 0.00 4.04
2070 3986 2.679837 GTGTCACGTATAGGTCCTCGAA 59.320 50.000 5.53 0.00 0.00 3.71
2071 3987 2.679837 TGTCACGTATAGGTCCTCGAAC 59.320 50.000 5.53 4.32 0.00 3.95
2072 3988 2.941720 GTCACGTATAGGTCCTCGAACT 59.058 50.000 5.53 0.00 32.68 3.01
2073 3989 4.122776 GTCACGTATAGGTCCTCGAACTA 58.877 47.826 5.53 0.00 36.22 2.24
2074 3990 4.754114 GTCACGTATAGGTCCTCGAACTAT 59.246 45.833 5.53 4.71 43.85 2.12
2075 3991 4.753610 TCACGTATAGGTCCTCGAACTATG 59.246 45.833 9.07 0.00 41.89 2.23
2076 3992 4.753610 CACGTATAGGTCCTCGAACTATGA 59.246 45.833 9.07 0.00 41.89 2.15
2077 3993 5.237996 CACGTATAGGTCCTCGAACTATGAA 59.762 44.000 9.07 0.00 41.89 2.57
2078 3994 5.824624 ACGTATAGGTCCTCGAACTATGAAA 59.175 40.000 9.07 0.00 41.89 2.69
2079 3995 6.319658 ACGTATAGGTCCTCGAACTATGAAAA 59.680 38.462 9.07 0.00 41.89 2.29
2080 3996 7.014038 ACGTATAGGTCCTCGAACTATGAAAAT 59.986 37.037 9.07 0.00 41.89 1.82
2081 3997 7.537991 CGTATAGGTCCTCGAACTATGAAAATC 59.462 40.741 9.07 0.00 41.89 2.17
2082 3998 4.683832 AGGTCCTCGAACTATGAAAATCG 58.316 43.478 0.00 0.00 36.67 3.34
2083 3999 4.159879 AGGTCCTCGAACTATGAAAATCGT 59.840 41.667 0.00 0.00 36.70 3.73
2084 4000 4.503370 GGTCCTCGAACTATGAAAATCGTC 59.497 45.833 0.00 0.00 36.70 4.20
2085 4001 5.100259 GTCCTCGAACTATGAAAATCGTCA 58.900 41.667 0.00 0.00 36.70 4.35
2086 4002 5.749109 GTCCTCGAACTATGAAAATCGTCAT 59.251 40.000 0.00 0.00 41.21 3.06
2087 4003 5.977725 TCCTCGAACTATGAAAATCGTCATC 59.022 40.000 0.00 0.00 39.07 2.92
2088 4004 5.175856 CCTCGAACTATGAAAATCGTCATCC 59.824 44.000 0.00 0.00 39.07 3.51
2089 4005 5.656480 TCGAACTATGAAAATCGTCATCCA 58.344 37.500 0.00 0.00 39.07 3.41
2090 4006 5.748630 TCGAACTATGAAAATCGTCATCCAG 59.251 40.000 0.00 0.00 39.07 3.86
2091 4007 5.050769 CGAACTATGAAAATCGTCATCCAGG 60.051 44.000 0.00 0.00 39.07 4.45
2092 4008 5.359194 ACTATGAAAATCGTCATCCAGGT 57.641 39.130 0.00 0.00 39.07 4.00
2093 4009 5.360591 ACTATGAAAATCGTCATCCAGGTC 58.639 41.667 0.00 0.00 39.07 3.85
2094 4010 2.985896 TGAAAATCGTCATCCAGGTCC 58.014 47.619 0.00 0.00 0.00 4.46
2095 4011 2.571653 TGAAAATCGTCATCCAGGTCCT 59.428 45.455 0.00 0.00 0.00 3.85
2096 4012 2.990066 AAATCGTCATCCAGGTCCTC 57.010 50.000 0.00 0.00 0.00 3.71
2097 4013 0.747255 AATCGTCATCCAGGTCCTCG 59.253 55.000 0.00 0.00 0.00 4.63
2098 4014 0.106669 ATCGTCATCCAGGTCCTCGA 60.107 55.000 1.05 1.05 0.00 4.04
2099 4015 0.323087 TCGTCATCCAGGTCCTCGAA 60.323 55.000 0.00 0.00 0.00 3.71
2100 4016 0.101399 CGTCATCCAGGTCCTCGAAG 59.899 60.000 0.00 0.00 0.00 3.79
2101 4017 1.187087 GTCATCCAGGTCCTCGAAGT 58.813 55.000 0.00 0.00 0.00 3.01
2102 4018 1.134965 GTCATCCAGGTCCTCGAAGTG 60.135 57.143 0.00 0.00 0.00 3.16
2103 4019 0.460987 CATCCAGGTCCTCGAAGTGC 60.461 60.000 0.00 0.00 0.00 4.40
2104 4020 0.904865 ATCCAGGTCCTCGAAGTGCA 60.905 55.000 0.00 0.00 0.00 4.57
2105 4021 1.079543 CCAGGTCCTCGAAGTGCAG 60.080 63.158 0.00 0.00 0.00 4.41
2106 4022 1.668294 CAGGTCCTCGAAGTGCAGT 59.332 57.895 0.00 0.00 0.00 4.40
2107 4023 0.888619 CAGGTCCTCGAAGTGCAGTA 59.111 55.000 0.00 0.00 0.00 2.74
2108 4024 1.272490 CAGGTCCTCGAAGTGCAGTAA 59.728 52.381 0.00 0.00 0.00 2.24
2109 4025 1.546476 AGGTCCTCGAAGTGCAGTAAG 59.454 52.381 0.00 0.00 0.00 2.34
2110 4026 1.272769 GGTCCTCGAAGTGCAGTAAGT 59.727 52.381 0.00 0.00 0.00 2.24
2111 4027 2.329379 GTCCTCGAAGTGCAGTAAGTG 58.671 52.381 0.00 0.00 0.00 3.16
2112 4028 1.961394 TCCTCGAAGTGCAGTAAGTGT 59.039 47.619 0.00 0.00 0.00 3.55
2113 4029 2.061773 CCTCGAAGTGCAGTAAGTGTG 58.938 52.381 0.00 0.00 0.00 3.82
2114 4030 2.545952 CCTCGAAGTGCAGTAAGTGTGT 60.546 50.000 0.00 0.00 0.00 3.72
2115 4031 2.726760 CTCGAAGTGCAGTAAGTGTGTC 59.273 50.000 0.00 0.00 0.00 3.67
2116 4032 2.100087 TCGAAGTGCAGTAAGTGTGTCA 59.900 45.455 0.00 0.00 0.00 3.58
2117 4033 3.059884 CGAAGTGCAGTAAGTGTGTCAT 58.940 45.455 0.00 0.00 0.00 3.06
2118 4034 3.494626 CGAAGTGCAGTAAGTGTGTCATT 59.505 43.478 0.00 0.00 0.00 2.57
2119 4035 4.376413 CGAAGTGCAGTAAGTGTGTCATTC 60.376 45.833 0.00 0.00 0.00 2.67
2120 4036 4.071961 AGTGCAGTAAGTGTGTCATTCA 57.928 40.909 0.00 0.00 0.00 2.57
2121 4037 4.060900 AGTGCAGTAAGTGTGTCATTCAG 58.939 43.478 0.00 0.00 0.00 3.02
2122 4038 3.187227 GTGCAGTAAGTGTGTCATTCAGG 59.813 47.826 0.00 0.00 0.00 3.86
2123 4039 3.181455 TGCAGTAAGTGTGTCATTCAGGT 60.181 43.478 0.00 0.00 0.00 4.00
2124 4040 3.815401 GCAGTAAGTGTGTCATTCAGGTT 59.185 43.478 0.00 0.00 0.00 3.50
2125 4041 4.083802 GCAGTAAGTGTGTCATTCAGGTTC 60.084 45.833 0.00 0.00 0.00 3.62
2126 4042 5.056480 CAGTAAGTGTGTCATTCAGGTTCA 58.944 41.667 0.00 0.00 0.00 3.18
2127 4043 5.527214 CAGTAAGTGTGTCATTCAGGTTCAA 59.473 40.000 0.00 0.00 0.00 2.69
2128 4044 6.038161 CAGTAAGTGTGTCATTCAGGTTCAAA 59.962 38.462 0.00 0.00 0.00 2.69
2129 4045 5.913137 AAGTGTGTCATTCAGGTTCAAAA 57.087 34.783 0.00 0.00 0.00 2.44
2130 4046 6.469782 AAGTGTGTCATTCAGGTTCAAAAT 57.530 33.333 0.00 0.00 0.00 1.82
2131 4047 6.076981 AGTGTGTCATTCAGGTTCAAAATC 57.923 37.500 0.00 0.00 0.00 2.17
2132 4048 5.829924 AGTGTGTCATTCAGGTTCAAAATCT 59.170 36.000 0.00 0.00 0.00 2.40
2133 4049 6.016777 AGTGTGTCATTCAGGTTCAAAATCTC 60.017 38.462 0.00 0.00 0.00 2.75
2134 4050 5.241506 TGTGTCATTCAGGTTCAAAATCTCC 59.758 40.000 0.00 0.00 0.00 3.71
2135 4051 4.766891 TGTCATTCAGGTTCAAAATCTCCC 59.233 41.667 0.00 0.00 0.00 4.30
2136 4052 5.012893 GTCATTCAGGTTCAAAATCTCCCT 58.987 41.667 0.00 0.00 0.00 4.20
2137 4053 5.012239 TCATTCAGGTTCAAAATCTCCCTG 58.988 41.667 0.00 0.00 43.26 4.45
2139 4055 4.021102 TCAGGTTCAAAATCTCCCTGAC 57.979 45.455 2.67 0.00 45.05 3.51
2140 4056 3.084786 CAGGTTCAAAATCTCCCTGACC 58.915 50.000 0.00 0.00 44.39 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.335964 CGACATCGCCCGATCAGTAAT 60.336 52.381 0.00 0.00 31.62 1.89
1 2 0.030235 CGACATCGCCCGATCAGTAA 59.970 55.000 0.00 0.00 31.62 2.24
2 3 0.816421 TCGACATCGCCCGATCAGTA 60.816 55.000 0.00 0.00 39.60 2.74
3 4 2.064723 CTCGACATCGCCCGATCAGT 62.065 60.000 0.00 0.00 39.60 3.41
4 5 1.371022 CTCGACATCGCCCGATCAG 60.371 63.158 0.00 0.00 39.60 2.90
5 6 1.381165 TTCTCGACATCGCCCGATCA 61.381 55.000 0.00 0.00 39.60 2.92
6 7 0.935366 GTTCTCGACATCGCCCGATC 60.935 60.000 0.00 0.00 39.60 3.69
7 8 1.065928 GTTCTCGACATCGCCCGAT 59.934 57.895 0.00 0.00 39.60 4.18
8 9 2.488355 GTTCTCGACATCGCCCGA 59.512 61.111 0.00 0.00 39.60 5.14
9 10 2.582498 GGTTCTCGACATCGCCCG 60.582 66.667 0.00 0.00 39.60 6.13
10 11 2.582498 CGGTTCTCGACATCGCCC 60.582 66.667 0.00 0.00 42.43 6.13
11 12 1.012486 AAACGGTTCTCGACATCGCC 61.012 55.000 0.00 0.00 42.43 5.54
12 13 1.621107 TAAACGGTTCTCGACATCGC 58.379 50.000 0.00 0.00 42.43 4.58
13 14 2.787680 GGATAAACGGTTCTCGACATCG 59.212 50.000 0.00 0.00 42.43 3.84
14 15 2.787680 CGGATAAACGGTTCTCGACATC 59.212 50.000 0.00 0.00 42.43 3.06
15 16 2.424601 TCGGATAAACGGTTCTCGACAT 59.575 45.455 0.00 0.00 42.43 3.06
16 17 1.811965 TCGGATAAACGGTTCTCGACA 59.188 47.619 0.00 0.00 42.43 4.35
17 18 2.448219 CTCGGATAAACGGTTCTCGAC 58.552 52.381 0.00 0.00 42.43 4.20
18 19 1.402968 CCTCGGATAAACGGTTCTCGA 59.597 52.381 0.00 0.00 42.43 4.04
19 20 1.133790 ACCTCGGATAAACGGTTCTCG 59.866 52.381 0.00 0.00 45.88 4.04
20 21 2.955477 ACCTCGGATAAACGGTTCTC 57.045 50.000 0.00 0.00 0.00 2.87
21 22 4.806640 TTAACCTCGGATAAACGGTTCT 57.193 40.909 0.00 0.00 40.10 3.01
22 23 6.088616 CGATATTAACCTCGGATAAACGGTTC 59.911 42.308 0.00 0.00 40.10 3.62
23 24 5.922544 CGATATTAACCTCGGATAAACGGTT 59.077 40.000 0.00 0.00 42.10 4.44
24 25 5.241506 TCGATATTAACCTCGGATAAACGGT 59.758 40.000 8.23 0.00 35.64 4.83
25 26 5.702865 TCGATATTAACCTCGGATAAACGG 58.297 41.667 8.23 0.00 35.64 4.44
26 27 6.805271 ACATCGATATTAACCTCGGATAAACG 59.195 38.462 0.00 0.00 35.64 3.60
27 28 7.811236 TCACATCGATATTAACCTCGGATAAAC 59.189 37.037 0.00 0.00 35.64 2.01
28 29 7.888424 TCACATCGATATTAACCTCGGATAAA 58.112 34.615 0.00 0.00 35.64 1.40
29 30 7.457024 TCACATCGATATTAACCTCGGATAA 57.543 36.000 0.00 0.00 35.64 1.75
30 31 7.392393 TCTTCACATCGATATTAACCTCGGATA 59.608 37.037 0.00 0.00 35.64 2.59
31 32 5.977489 TCACATCGATATTAACCTCGGAT 57.023 39.130 0.00 0.51 35.64 4.18
32 33 5.533528 TCTTCACATCGATATTAACCTCGGA 59.466 40.000 0.00 0.00 35.64 4.55
33 34 5.769367 TCTTCACATCGATATTAACCTCGG 58.231 41.667 0.00 0.00 35.64 4.63
34 35 7.694388 TTTCTTCACATCGATATTAACCTCG 57.306 36.000 0.00 2.83 36.25 4.63
43 44 9.825109 TGGTGTAATAATTTCTTCACATCGATA 57.175 29.630 0.00 0.00 0.00 2.92
44 45 8.731275 TGGTGTAATAATTTCTTCACATCGAT 57.269 30.769 0.00 0.00 0.00 3.59
45 46 8.038351 TCTGGTGTAATAATTTCTTCACATCGA 58.962 33.333 0.00 0.00 0.00 3.59
46 47 8.196802 TCTGGTGTAATAATTTCTTCACATCG 57.803 34.615 0.00 0.00 0.00 3.84
136 137 9.528018 CGCACAAATTGATAAAATAATTAGGGT 57.472 29.630 0.00 0.00 0.00 4.34
137 138 9.743057 TCGCACAAATTGATAAAATAATTAGGG 57.257 29.630 0.00 0.00 0.00 3.53
144 145 9.416794 ACAAACATCGCACAAATTGATAAAATA 57.583 25.926 0.00 0.00 0.00 1.40
145 146 8.309163 ACAAACATCGCACAAATTGATAAAAT 57.691 26.923 0.00 0.00 0.00 1.82
146 147 7.706281 ACAAACATCGCACAAATTGATAAAA 57.294 28.000 0.00 0.00 0.00 1.52
147 148 7.706281 AACAAACATCGCACAAATTGATAAA 57.294 28.000 0.00 0.00 0.00 1.40
148 149 7.223582 ACAAACAAACATCGCACAAATTGATAA 59.776 29.630 0.00 0.00 0.00 1.75
149 150 6.699204 ACAAACAAACATCGCACAAATTGATA 59.301 30.769 0.00 0.00 0.00 2.15
150 151 5.523188 ACAAACAAACATCGCACAAATTGAT 59.477 32.000 0.00 0.00 0.00 2.57
151 152 4.867047 ACAAACAAACATCGCACAAATTGA 59.133 33.333 0.00 0.00 0.00 2.57
152 153 5.141355 ACAAACAAACATCGCACAAATTG 57.859 34.783 0.00 0.00 0.00 2.32
153 154 5.052040 CGTACAAACAAACATCGCACAAATT 60.052 36.000 0.00 0.00 0.00 1.82
154 155 4.439449 CGTACAAACAAACATCGCACAAAT 59.561 37.500 0.00 0.00 0.00 2.32
155 156 3.786576 CGTACAAACAAACATCGCACAAA 59.213 39.130 0.00 0.00 0.00 2.83
156 157 3.355270 CGTACAAACAAACATCGCACAA 58.645 40.909 0.00 0.00 0.00 3.33
157 158 2.286477 CCGTACAAACAAACATCGCACA 60.286 45.455 0.00 0.00 0.00 4.57
158 159 2.286536 ACCGTACAAACAAACATCGCAC 60.287 45.455 0.00 0.00 0.00 5.34
159 160 1.941294 ACCGTACAAACAAACATCGCA 59.059 42.857 0.00 0.00 0.00 5.10
160 161 2.222445 AGACCGTACAAACAAACATCGC 59.778 45.455 0.00 0.00 0.00 4.58
161 162 4.461992 AAGACCGTACAAACAAACATCG 57.538 40.909 0.00 0.00 0.00 3.84
163 164 9.880157 AGTATATAAGACCGTACAAACAAACAT 57.120 29.630 0.00 0.00 0.00 2.71
164 165 9.709495 AAGTATATAAGACCGTACAAACAAACA 57.291 29.630 0.00 0.00 0.00 2.83
168 169 9.709495 ACAAAAGTATATAAGACCGTACAAACA 57.291 29.630 0.00 0.00 0.00 2.83
171 172 9.709495 ACAACAAAAGTATATAAGACCGTACAA 57.291 29.630 0.00 0.00 0.00 2.41
172 173 9.709495 AACAACAAAAGTATATAAGACCGTACA 57.291 29.630 0.00 0.00 0.00 2.90
173 174 9.962759 CAACAACAAAAGTATATAAGACCGTAC 57.037 33.333 0.00 0.00 0.00 3.67
174 175 9.709495 ACAACAACAAAAGTATATAAGACCGTA 57.291 29.630 0.00 0.00 0.00 4.02
175 176 8.611654 ACAACAACAAAAGTATATAAGACCGT 57.388 30.769 0.00 0.00 0.00 4.83
176 177 9.325150 CAACAACAACAAAAGTATATAAGACCG 57.675 33.333 0.00 0.00 0.00 4.79
177 178 9.620660 CCAACAACAACAAAAGTATATAAGACC 57.379 33.333 0.00 0.00 0.00 3.85
182 183 8.732531 GGCTACCAACAACAACAAAAGTATATA 58.267 33.333 0.00 0.00 0.00 0.86
183 184 7.450323 AGGCTACCAACAACAACAAAAGTATAT 59.550 33.333 0.00 0.00 0.00 0.86
184 185 6.773685 AGGCTACCAACAACAACAAAAGTATA 59.226 34.615 0.00 0.00 0.00 1.47
185 186 5.596772 AGGCTACCAACAACAACAAAAGTAT 59.403 36.000 0.00 0.00 0.00 2.12
186 187 4.951094 AGGCTACCAACAACAACAAAAGTA 59.049 37.500 0.00 0.00 0.00 2.24
187 188 3.767131 AGGCTACCAACAACAACAAAAGT 59.233 39.130 0.00 0.00 0.00 2.66
188 189 4.385358 AGGCTACCAACAACAACAAAAG 57.615 40.909 0.00 0.00 0.00 2.27
189 190 4.951094 AGTAGGCTACCAACAACAACAAAA 59.049 37.500 20.67 0.00 0.00 2.44
190 191 4.528920 AGTAGGCTACCAACAACAACAAA 58.471 39.130 20.67 0.00 0.00 2.83
191 192 4.159244 AGTAGGCTACCAACAACAACAA 57.841 40.909 20.67 0.00 0.00 2.83
192 193 3.849563 AGTAGGCTACCAACAACAACA 57.150 42.857 20.67 0.00 0.00 3.33
193 194 6.812879 ATTAAGTAGGCTACCAACAACAAC 57.187 37.500 20.67 0.00 0.00 3.32
194 195 8.921353 TTAATTAAGTAGGCTACCAACAACAA 57.079 30.769 20.67 5.23 0.00 2.83
197 198 9.333724 GCTATTAATTAAGTAGGCTACCAACAA 57.666 33.333 20.67 12.48 0.00 2.83
198 199 8.711170 AGCTATTAATTAAGTAGGCTACCAACA 58.289 33.333 20.67 3.64 0.00 3.33
205 206 9.780186 CTGGTTTAGCTATTAATTAAGTAGGCT 57.220 33.333 15.81 15.81 0.00 4.58
206 207 9.774413 TCTGGTTTAGCTATTAATTAAGTAGGC 57.226 33.333 3.94 5.47 0.00 3.93
243 244 8.624776 GCTGGTGCTCTTTATTTATCTGTTAAT 58.375 33.333 0.00 0.00 36.03 1.40
272 273 2.879103 TGAGGTTCCATGAGAAACCC 57.121 50.000 16.39 10.97 43.86 4.11
280 281 5.551233 TCTTGTTACTCTTGAGGTTCCATG 58.449 41.667 2.55 0.00 0.00 3.66
289 290 4.400529 TGTGTGCTCTTGTTACTCTTGA 57.599 40.909 0.00 0.00 0.00 3.02
314 315 1.740296 CGGTCGGATCTTGCGGTTT 60.740 57.895 0.00 0.00 0.00 3.27
346 347 2.704725 TGCCGTCATTTCTCAAAAGC 57.295 45.000 0.00 0.00 0.00 3.51
359 360 6.529829 TGTTGCTTAATCAATAAAATGCCGTC 59.470 34.615 0.00 0.00 0.00 4.79
404 405 5.282055 TCATTCTGCTTCGGATTGTATCT 57.718 39.130 0.00 0.00 0.00 1.98
433 434 6.042777 CCGTTCAGATTATCAGCAGTTTCTA 58.957 40.000 0.00 0.00 0.00 2.10
435 436 4.631813 ACCGTTCAGATTATCAGCAGTTTC 59.368 41.667 0.00 0.00 0.00 2.78
437 438 3.935203 CACCGTTCAGATTATCAGCAGTT 59.065 43.478 0.00 0.00 0.00 3.16
438 439 3.055819 ACACCGTTCAGATTATCAGCAGT 60.056 43.478 0.00 0.00 0.00 4.40
439 440 3.525537 ACACCGTTCAGATTATCAGCAG 58.474 45.455 0.00 0.00 0.00 4.24
440 441 3.521560 GACACCGTTCAGATTATCAGCA 58.478 45.455 0.00 0.00 0.00 4.41
441 442 2.866762 GGACACCGTTCAGATTATCAGC 59.133 50.000 0.00 0.00 0.00 4.26
443 444 4.442893 GGATGGACACCGTTCAGATTATCA 60.443 45.833 0.00 0.00 0.00 2.15
451 452 0.690192 ACATGGATGGACACCGTTCA 59.310 50.000 0.00 0.00 31.84 3.18
452 453 1.737793 GAACATGGATGGACACCGTTC 59.262 52.381 0.00 0.00 32.46 3.95
460 461 1.133823 CATTCCGGGAACATGGATGGA 60.134 52.381 12.53 0.00 34.44 3.41
483 484 8.995220 GTCGTGGAAGGTAATATATATGCAAAA 58.005 33.333 0.00 0.00 0.00 2.44
486 487 7.094631 GTGTCGTGGAAGGTAATATATATGCA 58.905 38.462 0.00 0.00 0.00 3.96
487 488 7.063074 GTGTGTCGTGGAAGGTAATATATATGC 59.937 40.741 0.00 0.00 0.00 3.14
488 489 8.085909 TGTGTGTCGTGGAAGGTAATATATATG 58.914 37.037 0.00 0.00 0.00 1.78
491 492 6.127281 TGTGTGTGTCGTGGAAGGTAATATAT 60.127 38.462 0.00 0.00 0.00 0.86
492 493 5.185442 TGTGTGTGTCGTGGAAGGTAATATA 59.815 40.000 0.00 0.00 0.00 0.86
494 495 3.321396 TGTGTGTGTCGTGGAAGGTAATA 59.679 43.478 0.00 0.00 0.00 0.98
497 498 1.112950 TGTGTGTGTCGTGGAAGGTA 58.887 50.000 0.00 0.00 0.00 3.08
498 499 0.461339 GTGTGTGTGTCGTGGAAGGT 60.461 55.000 0.00 0.00 0.00 3.50
499 500 0.461163 TGTGTGTGTGTCGTGGAAGG 60.461 55.000 0.00 0.00 0.00 3.46
500 501 0.650512 GTGTGTGTGTGTCGTGGAAG 59.349 55.000 0.00 0.00 0.00 3.46
501 502 0.037232 TGTGTGTGTGTGTCGTGGAA 60.037 50.000 0.00 0.00 0.00 3.53
502 503 0.738063 GTGTGTGTGTGTGTCGTGGA 60.738 55.000 0.00 0.00 0.00 4.02
503 504 1.016653 TGTGTGTGTGTGTGTCGTGG 61.017 55.000 0.00 0.00 0.00 4.94
505 506 0.319986 TGTGTGTGTGTGTGTGTCGT 60.320 50.000 0.00 0.00 0.00 4.34
506 507 0.094558 GTGTGTGTGTGTGTGTGTCG 59.905 55.000 0.00 0.00 0.00 4.35
507 508 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
508 509 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
509 510 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
510 511 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
514 515 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
515 516 1.960994 TTCGTGCGTGTGTGTGTGTG 61.961 55.000 0.00 0.00 0.00 3.82
526 527 2.165641 TCTGTAGGATTCATTCGTGCGT 59.834 45.455 0.00 0.00 0.00 5.24
542 543 3.764434 CACTACTGGCTTCTTCCTCTGTA 59.236 47.826 0.00 0.00 0.00 2.74
543 544 2.564947 CACTACTGGCTTCTTCCTCTGT 59.435 50.000 0.00 0.00 0.00 3.41
611 612 2.900106 GCTGCAGGGGACACTTCCT 61.900 63.158 17.12 0.00 42.38 3.36
626 634 3.257561 CGAACTCCGATGCCGCTG 61.258 66.667 0.00 0.00 41.76 5.18
810 838 2.300956 AAGAGAGACAGAGTGGCAGA 57.699 50.000 0.00 0.00 0.00 4.26
816 844 3.252554 ACTGGGAAAGAGAGACAGAGT 57.747 47.619 0.00 0.00 33.57 3.24
974 1011 0.185175 TCTGAGGTAGATAGGGCGCA 59.815 55.000 10.83 0.00 0.00 6.09
981 1018 5.913946 TCATCCTGACTCTGAGGTAGATA 57.086 43.478 9.85 0.00 34.21 1.98
982 1019 4.805140 TCATCCTGACTCTGAGGTAGAT 57.195 45.455 9.85 3.16 34.21 1.98
998 1035 3.376546 GTGGCTCTTCATCTTGTTCATCC 59.623 47.826 0.00 0.00 0.00 3.51
1009 1046 2.437359 GCTGCCGTGGCTCTTCAT 60.437 61.111 12.84 0.00 42.51 2.57
1044 1096 2.837291 CTCAGCCCTCCTCCTCCG 60.837 72.222 0.00 0.00 0.00 4.63
1048 1100 3.478274 CCTGCTCAGCCCTCCTCC 61.478 72.222 0.00 0.00 0.00 4.30
1049 1101 1.765657 ATCCTGCTCAGCCCTCCTC 60.766 63.158 0.00 0.00 0.00 3.71
1154 1219 3.098774 TCAGATCAGGAGCAGAAGAGT 57.901 47.619 0.00 0.00 0.00 3.24
1200 1265 2.295885 GCACGCCCTAGAGAACTACTA 58.704 52.381 0.00 0.00 0.00 1.82
1212 1277 1.153706 GTATACACACGCACGCCCT 60.154 57.895 0.00 0.00 0.00 5.19
1214 1279 1.784856 CTATGTATACACACGCACGCC 59.215 52.381 7.96 0.00 37.54 5.68
1216 1281 2.223641 ACCCTATGTATACACACGCACG 60.224 50.000 7.96 0.00 37.54 5.34
1217 1282 3.447918 ACCCTATGTATACACACGCAC 57.552 47.619 7.96 0.00 37.54 5.34
1218 1283 4.209538 ACTACCCTATGTATACACACGCA 58.790 43.478 7.96 0.00 37.54 5.24
1219 1284 4.843220 ACTACCCTATGTATACACACGC 57.157 45.455 7.96 0.00 37.54 5.34
1220 1285 6.261603 TCTGAACTACCCTATGTATACACACG 59.738 42.308 7.96 0.00 37.54 4.49
1221 1286 7.578310 TCTGAACTACCCTATGTATACACAC 57.422 40.000 7.96 0.00 37.54 3.82
1222 1287 7.837689 ACTTCTGAACTACCCTATGTATACACA 59.162 37.037 7.96 0.00 39.52 3.72
1223 1288 8.235359 ACTTCTGAACTACCCTATGTATACAC 57.765 38.462 7.96 0.00 0.00 2.90
1338 1437 1.073284 ACACCCAACAGACCCATACAC 59.927 52.381 0.00 0.00 0.00 2.90
1386 1485 7.479916 CCGAGATCTTTCATTTCTTTTCGAAAG 59.520 37.037 10.98 5.92 44.29 2.62
1387 1486 7.172532 TCCGAGATCTTTCATTTCTTTTCGAAA 59.827 33.333 6.47 6.47 45.08 3.46
1388 1487 6.649141 TCCGAGATCTTTCATTTCTTTTCGAA 59.351 34.615 0.00 0.00 0.00 3.71
1393 1492 8.396272 TCTTTTCCGAGATCTTTCATTTCTTT 57.604 30.769 0.00 0.00 0.00 2.52
1394 1493 7.986085 TCTTTTCCGAGATCTTTCATTTCTT 57.014 32.000 0.00 0.00 0.00 2.52
1395 1494 7.986085 TTCTTTTCCGAGATCTTTCATTTCT 57.014 32.000 0.00 0.00 0.00 2.52
1484 3098 8.348285 TCCATTTTTAGTCAAATAGTGAAGGG 57.652 34.615 0.00 0.00 38.23 3.95
1534 3148 5.237996 TGCTCAAGACATCTCTTTTCAACTG 59.762 40.000 0.00 0.00 34.20 3.16
1546 3160 4.034279 GCTTCTCTGATTGCTCAAGACATC 59.966 45.833 0.00 0.00 0.00 3.06
1588 3202 9.543783 AATACCTTAATTGAGTCGGTAAAGATC 57.456 33.333 0.00 0.00 34.25 2.75
1597 3211 8.932791 ACAAACACTAATACCTTAATTGAGTCG 58.067 33.333 0.00 0.00 0.00 4.18
1641 3255 1.753956 ACGAAGTGCAAAAATGCGAC 58.246 45.000 0.00 0.00 42.51 5.19
1713 3327 7.516785 CGACGGTACAGATCATAAAAATGGAAG 60.517 40.741 0.00 0.00 0.00 3.46
1735 3349 3.417275 ATGCTTCGAGCCTCCGACG 62.417 63.158 4.73 0.00 41.51 5.12
1824 3638 5.654603 TCGTAATAGTTCACACCACTGAT 57.345 39.130 0.00 0.00 0.00 2.90
1825 3639 5.221283 TGTTCGTAATAGTTCACACCACTGA 60.221 40.000 0.00 0.00 0.00 3.41
1826 3640 4.986034 TGTTCGTAATAGTTCACACCACTG 59.014 41.667 0.00 0.00 0.00 3.66
1827 3641 4.986659 GTGTTCGTAATAGTTCACACCACT 59.013 41.667 0.00 0.00 0.00 4.00
1828 3642 4.746115 TGTGTTCGTAATAGTTCACACCAC 59.254 41.667 0.00 0.00 34.81 4.16
1829 3643 4.946445 TGTGTTCGTAATAGTTCACACCA 58.054 39.130 0.00 0.00 34.81 4.17
1845 3667 2.096496 CCTTCGAGATGGCAATGTGTTC 59.904 50.000 0.00 0.00 0.00 3.18
1867 3689 5.878332 AATACAGATTCACGAAATGCACA 57.122 34.783 0.00 0.00 0.00 4.57
1884 3706 5.730550 CAACCTACTCTTGCCAGTAATACA 58.269 41.667 0.00 0.00 0.00 2.29
1989 3905 5.916318 TCATAATTTTTCCATGACCCATGC 58.084 37.500 0.00 0.00 40.20 4.06
1995 3911 7.274250 GCACTTCACTCATAATTTTTCCATGAC 59.726 37.037 0.00 0.00 0.00 3.06
2013 3929 1.344763 AGGACCTACAGTGCACTTCAC 59.655 52.381 18.94 6.28 45.98 3.18
2014 3930 1.717032 AGGACCTACAGTGCACTTCA 58.283 50.000 18.94 6.81 39.79 3.02
2015 3931 2.037251 TCAAGGACCTACAGTGCACTTC 59.963 50.000 18.94 11.95 39.79 3.01
2016 3932 2.047061 TCAAGGACCTACAGTGCACTT 58.953 47.619 18.94 11.49 39.79 3.16
2017 3933 1.717032 TCAAGGACCTACAGTGCACT 58.283 50.000 15.25 15.25 39.79 4.40
2018 3934 2.143925 GTTCAAGGACCTACAGTGCAC 58.856 52.381 9.40 9.40 39.79 4.57
2019 3935 2.047061 AGTTCAAGGACCTACAGTGCA 58.953 47.619 0.00 0.00 39.79 4.57
2020 3936 2.841442 AGTTCAAGGACCTACAGTGC 57.159 50.000 0.00 0.00 37.00 4.40
2021 3937 4.631813 GCAATAGTTCAAGGACCTACAGTG 59.368 45.833 0.00 0.00 0.00 3.66
2022 3938 4.286032 TGCAATAGTTCAAGGACCTACAGT 59.714 41.667 0.00 0.00 0.00 3.55
2023 3939 4.832248 TGCAATAGTTCAAGGACCTACAG 58.168 43.478 0.00 0.00 0.00 2.74
2024 3940 4.323485 CCTGCAATAGTTCAAGGACCTACA 60.323 45.833 0.00 0.00 0.00 2.74
2025 3941 4.192317 CCTGCAATAGTTCAAGGACCTAC 58.808 47.826 0.00 0.00 0.00 3.18
2026 3942 3.199946 CCCTGCAATAGTTCAAGGACCTA 59.800 47.826 0.00 0.00 0.00 3.08
2027 3943 2.025887 CCCTGCAATAGTTCAAGGACCT 60.026 50.000 0.00 0.00 0.00 3.85
2028 3944 2.369394 CCCTGCAATAGTTCAAGGACC 58.631 52.381 0.00 0.00 0.00 4.46
2029 3945 2.290960 ACCCCTGCAATAGTTCAAGGAC 60.291 50.000 0.00 0.00 0.00 3.85
2030 3946 1.992557 ACCCCTGCAATAGTTCAAGGA 59.007 47.619 0.00 0.00 0.00 3.36
2031 3947 2.094675 CACCCCTGCAATAGTTCAAGG 58.905 52.381 0.00 0.00 0.00 3.61
2032 3948 2.749621 GACACCCCTGCAATAGTTCAAG 59.250 50.000 0.00 0.00 0.00 3.02
2033 3949 2.107378 TGACACCCCTGCAATAGTTCAA 59.893 45.455 0.00 0.00 0.00 2.69
2034 3950 1.702401 TGACACCCCTGCAATAGTTCA 59.298 47.619 0.00 0.00 0.00 3.18
2035 3951 2.084546 GTGACACCCCTGCAATAGTTC 58.915 52.381 0.00 0.00 0.00 3.01
2036 3952 1.610624 CGTGACACCCCTGCAATAGTT 60.611 52.381 0.00 0.00 0.00 2.24
2037 3953 0.036388 CGTGACACCCCTGCAATAGT 60.036 55.000 0.00 0.00 0.00 2.12
2038 3954 0.036388 ACGTGACACCCCTGCAATAG 60.036 55.000 0.00 0.00 0.00 1.73
2039 3955 1.268066 TACGTGACACCCCTGCAATA 58.732 50.000 0.00 0.00 0.00 1.90
2040 3956 0.618458 ATACGTGACACCCCTGCAAT 59.382 50.000 0.00 0.00 0.00 3.56
2041 3957 1.206132 CTATACGTGACACCCCTGCAA 59.794 52.381 0.00 0.00 0.00 4.08
2042 3958 0.821517 CTATACGTGACACCCCTGCA 59.178 55.000 0.00 0.00 0.00 4.41
2043 3959 0.104304 CCTATACGTGACACCCCTGC 59.896 60.000 0.00 0.00 0.00 4.85
2044 3960 1.407979 GACCTATACGTGACACCCCTG 59.592 57.143 0.00 0.00 0.00 4.45
2045 3961 1.687368 GGACCTATACGTGACACCCCT 60.687 57.143 0.00 0.00 0.00 4.79
2046 3962 0.749049 GGACCTATACGTGACACCCC 59.251 60.000 0.00 0.00 0.00 4.95
2047 3963 1.680207 GAGGACCTATACGTGACACCC 59.320 57.143 0.00 0.00 0.00 4.61
2048 3964 1.332997 CGAGGACCTATACGTGACACC 59.667 57.143 0.00 0.00 0.00 4.16
2049 3965 2.283298 TCGAGGACCTATACGTGACAC 58.717 52.381 0.00 0.00 0.00 3.67
2050 3966 2.679837 GTTCGAGGACCTATACGTGACA 59.320 50.000 0.00 0.00 0.00 3.58
2051 3967 2.941720 AGTTCGAGGACCTATACGTGAC 59.058 50.000 0.00 0.00 0.00 3.67
2052 3968 3.272574 AGTTCGAGGACCTATACGTGA 57.727 47.619 0.00 0.00 0.00 4.35
2053 3969 4.753610 TCATAGTTCGAGGACCTATACGTG 59.246 45.833 0.00 0.00 0.00 4.49
2054 3970 4.965814 TCATAGTTCGAGGACCTATACGT 58.034 43.478 0.00 0.00 0.00 3.57
2055 3971 5.936686 TTCATAGTTCGAGGACCTATACG 57.063 43.478 0.00 0.00 0.00 3.06
2056 3972 7.537991 CGATTTTCATAGTTCGAGGACCTATAC 59.462 40.741 0.00 0.00 33.59 1.47
2057 3973 7.230108 ACGATTTTCATAGTTCGAGGACCTATA 59.770 37.037 0.00 0.00 35.64 1.31
2058 3974 6.040616 ACGATTTTCATAGTTCGAGGACCTAT 59.959 38.462 0.00 0.00 35.64 2.57
2059 3975 5.359009 ACGATTTTCATAGTTCGAGGACCTA 59.641 40.000 0.00 0.00 35.64 3.08
2060 3976 4.159879 ACGATTTTCATAGTTCGAGGACCT 59.840 41.667 0.00 0.00 35.64 3.85
2061 3977 4.430908 ACGATTTTCATAGTTCGAGGACC 58.569 43.478 0.00 0.00 35.64 4.46
2062 3978 5.100259 TGACGATTTTCATAGTTCGAGGAC 58.900 41.667 0.00 0.00 35.64 3.85
2063 3979 5.319140 TGACGATTTTCATAGTTCGAGGA 57.681 39.130 0.00 0.00 35.64 3.71
2064 3980 5.175856 GGATGACGATTTTCATAGTTCGAGG 59.824 44.000 0.00 0.00 36.30 4.63
2065 3981 5.748630 TGGATGACGATTTTCATAGTTCGAG 59.251 40.000 0.00 0.00 36.30 4.04
2066 3982 5.656480 TGGATGACGATTTTCATAGTTCGA 58.344 37.500 0.00 0.00 36.30 3.71
2067 3983 5.050769 CCTGGATGACGATTTTCATAGTTCG 60.051 44.000 0.00 0.00 36.30 3.95
2068 3984 5.817816 ACCTGGATGACGATTTTCATAGTTC 59.182 40.000 0.00 0.00 36.30 3.01
2069 3985 5.745227 ACCTGGATGACGATTTTCATAGTT 58.255 37.500 0.00 0.00 36.30 2.24
2070 3986 5.359194 ACCTGGATGACGATTTTCATAGT 57.641 39.130 0.00 0.00 36.30 2.12
2071 3987 4.752101 GGACCTGGATGACGATTTTCATAG 59.248 45.833 0.00 0.00 36.30 2.23
2072 3988 4.408921 AGGACCTGGATGACGATTTTCATA 59.591 41.667 0.00 0.00 36.30 2.15
2073 3989 3.200825 AGGACCTGGATGACGATTTTCAT 59.799 43.478 0.00 0.00 39.02 2.57
2074 3990 2.571653 AGGACCTGGATGACGATTTTCA 59.428 45.455 0.00 0.00 0.00 2.69
2075 3991 3.198872 GAGGACCTGGATGACGATTTTC 58.801 50.000 0.00 0.00 0.00 2.29
2076 3992 2.418746 CGAGGACCTGGATGACGATTTT 60.419 50.000 0.00 0.00 0.00 1.82
2077 3993 1.137086 CGAGGACCTGGATGACGATTT 59.863 52.381 0.00 0.00 0.00 2.17
2078 3994 0.747255 CGAGGACCTGGATGACGATT 59.253 55.000 0.00 0.00 0.00 3.34
2079 3995 0.106669 TCGAGGACCTGGATGACGAT 60.107 55.000 0.00 0.00 0.00 3.73
2080 3996 0.323087 TTCGAGGACCTGGATGACGA 60.323 55.000 7.08 1.71 0.00 4.20
2081 3997 0.101399 CTTCGAGGACCTGGATGACG 59.899 60.000 12.48 2.94 0.00 4.35
2082 3998 1.134965 CACTTCGAGGACCTGGATGAC 60.135 57.143 21.51 0.00 0.00 3.06
2083 3999 1.186200 CACTTCGAGGACCTGGATGA 58.814 55.000 21.51 2.60 0.00 2.92
2084 4000 0.460987 GCACTTCGAGGACCTGGATG 60.461 60.000 15.29 15.29 0.00 3.51
2085 4001 0.904865 TGCACTTCGAGGACCTGGAT 60.905 55.000 7.08 0.00 0.00 3.41
2086 4002 1.533033 TGCACTTCGAGGACCTGGA 60.533 57.895 0.00 0.00 0.00 3.86
2087 4003 1.079543 CTGCACTTCGAGGACCTGG 60.080 63.158 0.00 0.00 0.00 4.45
2088 4004 0.888619 TACTGCACTTCGAGGACCTG 59.111 55.000 0.00 0.00 0.00 4.00
2089 4005 1.546476 CTTACTGCACTTCGAGGACCT 59.454 52.381 0.00 0.00 0.00 3.85
2090 4006 1.272769 ACTTACTGCACTTCGAGGACC 59.727 52.381 0.00 0.00 0.00 4.46
2091 4007 2.288273 ACACTTACTGCACTTCGAGGAC 60.288 50.000 0.00 0.00 0.00 3.85
2092 4008 1.961394 ACACTTACTGCACTTCGAGGA 59.039 47.619 0.00 0.00 0.00 3.71
2093 4009 2.061773 CACACTTACTGCACTTCGAGG 58.938 52.381 0.00 0.00 0.00 4.63
2094 4010 2.726760 GACACACTTACTGCACTTCGAG 59.273 50.000 0.00 0.00 0.00 4.04
2095 4011 2.100087 TGACACACTTACTGCACTTCGA 59.900 45.455 0.00 0.00 0.00 3.71
2096 4012 2.469826 TGACACACTTACTGCACTTCG 58.530 47.619 0.00 0.00 0.00 3.79
2097 4013 4.511454 TGAATGACACACTTACTGCACTTC 59.489 41.667 0.00 0.00 0.00 3.01
2098 4014 4.450976 TGAATGACACACTTACTGCACTT 58.549 39.130 0.00 0.00 0.00 3.16
2099 4015 4.060900 CTGAATGACACACTTACTGCACT 58.939 43.478 0.00 0.00 0.00 4.40
2100 4016 3.187227 CCTGAATGACACACTTACTGCAC 59.813 47.826 0.00 0.00 0.00 4.57
2101 4017 3.181455 ACCTGAATGACACACTTACTGCA 60.181 43.478 0.00 0.00 0.00 4.41
2102 4018 3.403038 ACCTGAATGACACACTTACTGC 58.597 45.455 0.00 0.00 0.00 4.40
2103 4019 5.056480 TGAACCTGAATGACACACTTACTG 58.944 41.667 0.00 0.00 0.00 2.74
2104 4020 5.290493 TGAACCTGAATGACACACTTACT 57.710 39.130 0.00 0.00 0.00 2.24
2105 4021 6.371809 TTTGAACCTGAATGACACACTTAC 57.628 37.500 0.00 0.00 0.00 2.34
2106 4022 7.502226 AGATTTTGAACCTGAATGACACACTTA 59.498 33.333 0.00 0.00 0.00 2.24
2107 4023 5.913137 TTTTGAACCTGAATGACACACTT 57.087 34.783 0.00 0.00 0.00 3.16
2108 4024 5.829924 AGATTTTGAACCTGAATGACACACT 59.170 36.000 0.00 0.00 0.00 3.55
2109 4025 6.076981 AGATTTTGAACCTGAATGACACAC 57.923 37.500 0.00 0.00 0.00 3.82
2110 4026 5.241506 GGAGATTTTGAACCTGAATGACACA 59.758 40.000 0.00 0.00 0.00 3.72
2111 4027 5.335976 GGGAGATTTTGAACCTGAATGACAC 60.336 44.000 0.00 0.00 0.00 3.67
2112 4028 4.766891 GGGAGATTTTGAACCTGAATGACA 59.233 41.667 0.00 0.00 0.00 3.58
2113 4029 5.012893 AGGGAGATTTTGAACCTGAATGAC 58.987 41.667 0.00 0.00 0.00 3.06
2114 4030 5.261040 AGGGAGATTTTGAACCTGAATGA 57.739 39.130 0.00 0.00 0.00 2.57
2120 4036 3.441500 GGTCAGGGAGATTTTGAACCT 57.558 47.619 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.